genome.fa.s2343.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2343
Parameters: 2 7 7 80 10 50 1000
Length:  105724

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011--1041	15	2.1	15	93	0	53	12	22	16	48	1.80
2842--2886	21	2.1	21	84	8	56	22	20	4	53	1.63
5105--5130	13	2.0	13	100	0	52	30	15	15	38	1.88
6850--6916	37	1.9	35	88	11	102	29	25	11	32	1.92
7343--7412	19	3.6	19	94	1	113	27	14	15	42	1.86
12136--12202	37	1.9	35	88	11	102	29	25	11	32	1.92
19043--19069	13	2.1	13	100	0	54	40	14	14	29	1.86
19025--19089	33	2.0	33	87	3	96	40	15	12	32	1.84
19928--20289	49	7.2	51	78	10	345	33	16	24	24	1.96
21992--22035	20	2.0	20	87	12	61	63	13	9	13	1.51
29815--29840	13	2.0	13	100	0	52	30	15	15	38	1.88
30233--30425	49	4.1	49	84	8	281	33	17	24	25	1.96
30240--30425	92	2.0	92	97	0	354	32	17	24	25	1.97
30423--30689	33	8.2	33	86	2	364	20	17	33	28	1.95
30424--30685	97	2.7	98	92	1	420	20	17	33	29	1.95
30426--30689	64	4.1	65	90	2	399	19	17	34	29	1.95
30696--31211	34	15.8	34	76	11	436	32	12	34	19	1.90
30696--31236	191	2.8	193	85	8	610	32	13	34	20	1.91
30988--31264	27	9.2	27	73	20	169	31	13	34	20	1.91
30954--31233	61	4.5	61	87	7	416	31	13	35	20	1.91
31015--31292	34	8.8	34	74	16	224	31	13	34	20	1.91
30758--31209	130	3.5	128	89	2	667	32	12	34	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31118--31292	88	2.0	87	88	1	260	29	14	34	21	1.93
32266--32339	24	3.0	24	86	11	96	0	10	8	81	0.89
32275--32338	33	2.0	32	87	3	92	0	9	7	82	0.83
32577--32619	17	2.6	16	78	7	50	2	2	11	83	0.83
32588--32623	9	3.9	9	85	7	54	0	0	11	88	0.50
32577--32623	11	4.3	11	78	8	51	2	2	10	85	0.78
32588--32624	17	2.2	17	90	9	58	0	0	13	86	0.57
32591--32631	19	2.2	19	86	0	55	2	2	9	85	0.78
39383--39407	13	1.9	13	100	0	50	36	16	16	32	1.90
39365--39428	33	2.0	32	87	3	92	37	15	17	29	1.91
39752--39796	23	2.0	23	95	0	81	31	2	11	55	1.47
42252--42281	9	3.3	9	100	0	60	43	33	13	10	1.77
43841--43891	21	2.5	21	87	3	68	49	0	19	31	1.49
44000--44025	13	2.0	13	100	0	52	38	15	15	30	1.88
44547--44577	15	2.1	15	93	0	53	51	0	9	38	1.35
45823--45875	19	2.7	20	88	2	81	41	16	11	30	1.84
45826--45875	20	2.6	19	87	3	73	44	18	10	28	1.81
47853--47877	13	1.9	13	100	0	50	36	16	16	32	1.90
47835--47898	33	2.0	33	87	3	94	37	17	17	28	1.92
48222--48269	24	2.0	24	95	0	87	29	4	10	56	1.52
50723--50752	9	3.3	9	100	0	60	43	33	13	10	1.77
52321--52360	21	1.9	21	89	0	62	55	0	20	25	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52469--52494	13	2.0	13	100	0	52	38	15	15	30	1.88
58657--58721	33	2.0	33	84	0	85	36	18	12	32	1.88
61330--61356	13	2.1	13	100	0	54	40	14	14	29	1.86
67357--67432	31	2.5	31	95	0	134	25	21	13	40	1.89
70402--70841	234	1.9	234	81	3	537	26	25	18	29	1.98
71654--71696	22	2.0	22	81	9	52	30	13	13	41	1.84
72918--74740	155	11.8	154	77	8	1613	23	16	21	39	1.92
72918--74740	311	5.9	308	80	8	1655	23	16	21	39	1.92
74459--74748	143	2.0	145	80	5	329	23	18	21	36	1.95
75746--75880	41	3.2	41	73	12	130	33	14	31	21	1.93
75694--76294	84	7.1	84	81	3	557	34	15	30	19	1.93
76053--76259	43	4.9	42	67	20	128	31	15	30	21	1.95
76026--76236	41	5.0	41	66	21	132	33	14	30	21	1.93
75675--76274	252	2.4	251	82	2	709	33	15	30	19	1.93
76783--77204	78	5.5	78	83	4	412	29	16	25	27	1.97
78080--78125	20	2.3	20	100	0	92	45	10	19	23	1.82
77992--78223	108	2.1	108	84	3	297	43	14	19	22	1.87
78477--78772	110	2.7	112	78	8	268	35	15	18	30	1.92
79036--79070	18	1.9	18	88	0	52	0	14	2	82	0.77
91234--91259	13	2.0	13	100	0	52	30	15	15	38	1.88
91956--91999	21	2.1	21	83	8	54	25	31	4	38	1.76
93805--93843	13	3.0	13	100	0	78	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95922--95952	15	2.1	15	93	0	53	12	22	16	48	1.80
96850--96927	20	3.9	19	73	8	66	33	11	14	41	1.81

Tables:   1

The End!