genome.fa.s2346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2346
Parameters: 2 7 7 80 10 50 1000
Length:  50689

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039--1400	125	2.9	119	81	11	383	52	2	4	41	1.33
1039--1400	124	2.9	120	81	12	387	52	2	4	41	1.33
1684--1747	24	2.6	24	73	11	67	28	4	9	57	1.50
1744--1788	22	2.0	22	82	0	54	44	0	0	55	0.99
1830--1894	23	2.8	22	76	17	60	35	0	4	60	1.18
2176--2216	12	3.0	14	82	17	59	51	0	0	48	1.00
2169--2225	27	2.1	27	84	12	73	54	3	0	42	1.17
2178--2224	14	3.4	14	77	13	53	55	2	0	42	1.12
2177--2235	27	2.2	27	78	6	66	62	1	0	35	1.05
2375--2406	2	16.0	2	100	0	64	50	0	0	50	1.00
3769--3812	3	14.7	3	100	0	88	34	0	0	65	0.93
3998--4037	21	1.9	21	85	10	55	50	0	2	47	1.14
4155--4179	8	3.1	8	100	0	50	48	0	0	52	1.00
4810--4878	15	4.5	15	80	7	59	31	2	7	57	1.40
6165--6229	9	6.8	9	78	18	60	16	1	4	76	1.02
6161--6231	30	2.3	32	76	13	87	16	1	5	76	1.05
9663--9884	79	2.8	79	83	5	270	31	14	27	26	1.95
9920--10073	51	3.0	51	82	8	177	35	10	23	30	1.88
9896--10072	52	3.4	50	80	8	194	32	10	24	31	1.90
10003--10099	51	1.9	51	82	0	122	36	11	22	29	1.89
10184--10284	52	1.9	53	89	2	159	32	10	26	29	1.90
9790--10293	262	1.9	262	92	0	837	31	12	27	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13433--13563	52	2.5	52	91	0	208	29	16	19	35	1.93
13572--13596	13	1.9	13	100	0	50	36	16	16	32	1.90
13639--13701	19	3.7	18	74	24	64	36	15	12	34	1.86
13634--13732	32	3.1	32	94	1	162	35	15	12	37	1.84
13658--13714	13	3.9	13	76	24	60	33	17	14	35	1.90
14423--14762	52	7.1	50	79	12	363	32	17	25	24	1.97
14535--14767	43	5.1	43	77	11	241	31	17	26	24	1.97
14489--14762	92	2.9	92	91	1	422	31	17	25	25	1.97
14762--14959	33	6.0	33	89	3	292	20	17	33	28	1.95
14762--14955	65	3.0	66	88	4	293	19	18	34	28	1.95
14947--15328	100	3.8	99	83	7	470	30	13	34	20	1.91
14947--15289	36	10.3	34	76	15	272	29	13	35	20	1.92
15169--15220	27	1.9	27	96	0	95	21	17	38	23	1.93
15135--15252	61	1.9	62	84	8	161	26	16	36	21	1.94
15263--15362	33	3.3	30	73	12	87	32	14	31	23	1.93
14948--15361	197	2.1	200	82	7	522	30	13	34	20	1.92
16330--16363	17	2.0	17	88	0	50	0	8	8	82	0.85
16610--16639	11	2.7	11	89	0	51	0	0	10	90	0.47
16610--16660	24	2.2	23	82	3	57	3	3	11	80	0.98
16610--16660	23	2.1	23	82	7	57	3	3	11	80	0.98
23533--23663	52	2.5	52	94	0	235	29	16	19	35	1.94
23741--23836	13	5.7	17	71	28	73	36	17	11	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23734--23834	32	3.1	32	92	1	166	35	17	10	35	1.85
26251--26276	13	2.0	13	100	0	52	38	15	15	30	1.88
26263--26304	21	2.0	21	100	0	84	28	19	9	42	1.82
26321--26393	32	2.3	32	92	0	119	35	17	12	34	1.88
26329--26391	19	3.6	19	66	24	57	36	17	12	33	1.88
30359--30397	16	2.2	19	86	13	57	74	2	2	20	1.06
30676--30839	10	17.8	10	70	16	74	69	3	2	25	1.15
30698--30728	16	1.9	16	93	0	53	74	3	0	22	0.96
30698--30781	17	4.9	17	71	18	50	72	3	2	21	1.11
30731--30837	56	1.9	56	84	5	146	69	2	2	25	1.16
30742--30839	46	2.1	46	83	5	117	70	3	3	23	1.16
30797--30841	19	2.3	20	88	3	74	77	2	0	20	0.87
31047--31317	135	2.0	133	82	4	330	37	7	6	48	1.57
32304--32346	11	3.8	11	80	17	52	51	0	0	48	1.00
32554--32592	13	2.8	14	84	7	53	30	0	0	69	0.89
35128--35166	2	19.5	2	100	0	78	48	0	0	51	1.00
38619--38779	38	4.2	38	80	4	155	39	18	17	25	1.92
38643--38781	38	3.6	38	78	5	156	35	17	20	27	1.94
38619--38801	38	4.8	38	75	7	140	37	18	16	27	1.92
38619--38787	77	2.2	76	83	7	209	38	17	16	27	1.91
39315--39355	21	1.9	22	85	14	59	60	9	0	29	1.28
39657--39697	21	2.0	21	85	9	57	39	4	0	56	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46026--46112	38	2.3	38	87	2	120	35	16	17	31	1.92
47599--47673	20	3.8	20	76	0	87	33	12	12	42	1.79
47599--47676	40	2.0	39	87	2	111	33	11	12	42	1.79

Tables:   1

The End!