genome.fa.s2347.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2347
Parameters: 2 7 7 80 10 50 1000
Length:  98995

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690--730	1	41.0	1	100	0	82	0	0	100	0	0.00
1938--2365	141	3.1	136	86	5	424	36	10	9	43	1.71
2000--2450	143	3.2	140	86	4	624	36	8	10	44	1.70
2574--2871	155	1.9	155	85	2	411	23	14	20	41	1.89
2566--2943	155	2.5	154	81	4	397	24	15	19	40	1.90
5759--5788	13	2.3	13	94	0	51	36	10	16	36	1.82
5738--5802	33	2.0	33	88	11	98	35	15	15	33	1.89
5834--5891	19	3.0	20	82	7	75	36	17	13	32	1.89
6208--6265	19	3.0	20	80	7	75	34	17	17	31	1.93
5761--6507	374	2.0	374	97	0	1395	34	14	16	34	1.90
8606--8655	21	2.4	21	83	9	59	48	0	20	32	1.50
8613--8655	21	2.0	22	86	4	61	51	0	20	27	1.48
11249--11290	21	2.0	20	82	13	50	23	26	4	45	1.73
14584--14636	20	2.7	19	88	11	72	35	18	13	32	1.90
14665--14702	20	1.9	19	94	5	67	28	18	15	36	1.92
14687--14711	13	1.9	13	100	0	50	32	16	16	36	1.90
18636--18663	10	2.8	10	100	0	56	92	0	7	0	0.37
18643--18722	36	2.2	35	78	12	81	70	2	18	8	1.25
19977--20099	35	3.5	35	89	0	174	24	24	10	40	1.86
19979--20116	70	2.0	69	82	1	168	23	21	12	42	1.87
20099--20370	47	5.9	47	76	5	214	20	21	16	40	1.91
21863--22287	165	2.6	163	78	10	434	32	10	7	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22774--22828	11	4.9	11	75	18	51	78	0	18	3	0.90
22771--22831	31	2.0	31	83	6	79	78	0	18	3	0.88
22789--22831	15	2.8	16	83	16	56	81	0	13	4	0.84
22773--22828	22	2.5	23	82	2	60	78	0	17	3	0.89
22770--22822	23	2.3	22	78	9	61	77	0	20	1	0.87
23919--24228	142	2.2	142	88	3	455	33	9	11	44	1.73
31432--31576	33	4.4	33	98	0	272	35	12	22	29	1.91
31479--31579	20	5.8	20	65	29	77	33	11	22	31	1.91
31610--31672	19	3.6	19	72	24	75	33	19	14	33	1.91
31597--31674	32	2.4	32	93	0	138	32	17	15	34	1.92
35154--35227	20	3.6	21	77	13	73	36	10	18	33	1.86
35177--35230	20	2.6	20	88	11	74	35	11	14	38	1.82
36523--36726	66	3.0	66	75	4	201	34	24	12	28	1.92
36714--36792	33	2.4	32	81	6	88	44	29	3	22	1.70
38481--38567	31	2.8	31	78	3	77	60	4	5	28	1.39
44670--44694	13	1.9	13	100	0	50	36	16	16	32	1.90
44756--44780	13	1.9	13	100	0	50	32	16	16	36	1.90
44735--44797	32	1.9	33	93	3	110	34	15	12	36	1.86
44887--45067	98	1.8	98	94	2	319	30	19	17	32	1.95
49893--49920	13	2.2	13	100	0	56	28	14	17	39	1.89
49873--49939	33	2.0	33	88	5	100	37	13	14	34	1.86
51373--51413	11	3.6	11	87	6	64	9	12	0	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51381--51438	26	2.2	26	79	8	64	5	18	0	75	0.98
51376--51438	27	2.4	25	76	12	63	6	19	0	74	1.02
52254--52627	166	2.3	165	78	9	363	52	7	10	28	1.64
53059--53115	13	3.9	13	76	24	60	35	14	17	33	1.90
53072--53134	19	3.7	18	74	24	64	34	11	17	36	1.85
53058--53142	32	2.7	32	94	0	143	34	12	17	35	1.88
53220--53348	52	2.5	52	90	0	213	35	17	18	28	1.93
56714--57218	43	11.8	42	72	7	167	33	18	28	19	1.95
56966--57148	85	2.1	85	83	5	217	34	18	26	20	1.96
56955--57230	128	2.2	128	85	0	363	32	18	28	21	1.96
57083--57296	85	2.5	85	85	4	283	33	16	28	21	1.95
56955--57329	43	8.8	43	71	8	239	32	17	28	21	1.96
57948--58157	78	2.7	78	87	1	287	27	14	28	30	1.95
58817--58923	55	1.9	55	88	3	162	23	19	10	46	1.80
58923--58961	19	2.0	20	85	5	53	17	5	0	76	0.96
60738--60801	33	2.0	32	84	3	83	35	17	10	35	1.85
66672--66712	4	11.0	4	80	15	52	75	0	0	24	0.80
66770--66839	29	2.4	29	90	0	104	24	21	12	41	1.88
66799--66896	43	2.3	43	83	3	117	25	21	10	42	1.84
68653--68876	113	2.0	113	86	3	317	28	16	14	40	1.87
80341--80395	19	2.9	19	86	7	76	80	0	9	10	0.92
80340--80402	25	2.5	25	84	7	83	80	0	9	9	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81735--82555	42	19.6	42	72	6	484	19	28	17	35	1.94
81735--82006	125	2.2	126	86	3	370	19	29	18	32	1.96
83089--83130	4	10.5	4	80	10	50	76	0	0	23	0.79
83083--83130	20	2.4	21	75	21	50	75	0	0	25	0.81
83192--83294	29	3.5	29	90	1	152	25	22	10	41	1.86
83245--83342	43	2.3	44	85	3	128	25	20	9	44	1.81
85524--85578	19	2.9	19	97	0	101	34	10	14	40	1.81
85618--85643	13	2.0	13	100	0	52	30	15	15	38	1.88
88003--88343	52	6.5	53	69	14	206	29	26	12	31	1.92
88117--88192	27	2.8	27	90	6	109	23	32	21	22	1.98
88066--88457	107	3.7	107	72	10	336	27	27	14	30	1.95
88327--88403	28	2.8	28	87	0	100	23	33	19	23	1.97
88357--88559	80	2.6	79	81	2	219	24	29	17	29	1.97
95265--95298	17	2.0	17	88	0	50	50	17	26	5	1.69

Tables:   1

The End!