genome.fa.s2348.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2348
Parameters: 2 7 7 80 10 50 1000
Length:  201963

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1133--1195	20	2.9	22	71	22	60	57	1	1	39	1.18
1207--1247	21	1.9	22	85	14	59	46	2	2	48	1.28
1405--1500	50	1.9	50	93	0	165	50	9	22	17	1.75
1674--1706	4	8.2	4	100	0	66	24	48	0	27	1.51
14078--14124	2	23.5	2	100	0	94	51	0	0	48	1.00
16437--16498	28	2.2	28	100	0	124	53	9	20	16	1.71
20810--20874	26	2.5	27	74	18	75	20	3	0	76	0.91
22504--22555	21	2.5	21	73	17	54	17	3	3	75	1.11
22838--24252	95	14.8	96	80	5	1375	38	15	7	39	1.75
22947--24176	477	2.6	473	83	4	1513	38	15	7	38	1.76
22864--24152	573	2.2	570	80	7	1453	38	15	7	38	1.76
26356--26391	12	3.2	12	84	15	58	33	0	0	66	0.92
30043--30124	34	2.4	34	95	0	146	42	35	0	21	1.53
31856--31880	13	1.9	13	100	0	50	32	16	16	36	1.90
31836--31904	32	2.1	34	89	5	106	36	17	14	31	1.90
31935--31978	20	2.1	22	91	8	74	40	20	9	29	1.83
37791--37830	17	2.3	18	83	12	57	25	0	20	55	1.44
38025--38063	13	3.0	13	96	0	69	30	17	15	35	1.91
38184--38229	21	2.2	20	81	11	58	32	19	4	43	1.71
40620--40644	13	1.9	13	100	0	50	32	16	16	36	1.90
40600--40668	32	2.1	34	89	5	106	36	17	14	31	1.90
40699--40742	20	2.1	22	91	8	74	40	20	9	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44734--44874	34	4.4	34	83	15	210	41	36	0	21	1.53
44773--44831	25	2.4	25	100	0	118	40	37	0	22	1.54
44739--44866	59	2.2	59	100	0	256	40	37	0	21	1.54
46417--46459	2	21.5	2	100	0	86	48	0	0	51	1.00
46464--47626	192	6.1	191	88	3	1498	37	15	7	38	1.77
46464--47623	383	3.0	379	87	3	1594	37	15	7	38	1.77
49049--49079	14	2.3	14	94	5	55	29	9	0	61	1.28
50963--51147	34	5.5	34	87	3	257	40	26	7	25	1.82
55213--55275	19	3.3	19	90	0	90	34	19	17	28	1.94
55580--55762	34	5.4	34	87	3	253	39	26	7	25	1.83
58534--58605	36	2.0	36	97	0	135	37	13	31	16	1.88
61698--61737	16	2.4	17	87	8	55	80	0	15	5	0.88
64585--64612	8	3.5	8	100	0	56	50	10	0	39	1.37
65055--65134	40	2.0	40	100	0	160	40	12	20	27	1.88
65630--65694	32	2.2	31	81	10	73	26	13	15	44	1.84
70183--70224	11	3.7	11	78	15	50	26	2	0	71	0.98
70645--70824	93	1.9	95	80	6	215	35	12	11	41	1.78
72518--72577	29	2.1	29	100	0	102	40	10	0	50	1.36
72527--72577	16	3.4	16	73	15	63	37	7	0	54	1.29
77190--77694	95	5.3	95	79	5	475	39	14	5	40	1.69
77233--77694	191	2.4	189	87	6	662	39	13	6	40	1.70
77542--77868	179	1.8	180	82	4	428	41	11	5	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78263--78299	8	4.2	9	83	16	51	40	2	0	56	1.13
79206--79236	14	2.3	14	94	5	55	29	9	0	61	1.28
80769--80827	27	2.2	27	96	0	109	42	23	3	30	1.71
82143--82169	2	13.5	2	100	0	54	0	48	0	51	1.00
82169--82198	2	15.0	2	100	0	60	50	0	0	50	1.00
83777--83848	36	2.0	36	97	0	135	37	13	31	16	1.88
85279--85491	91	2.3	94	79	4	238	36	15	8	38	1.79
86936--87005	23	2.9	24	72	4	61	74	0	15	10	1.07
86943--86984	14	2.7	15	82	10	50	76	0	19	4	0.96
89814--89841	8	3.5	8	100	0	56	50	10	0	39	1.37
90817--90881	32	2.2	31	81	10	73	26	13	15	44	1.84
95831--96002	94	1.8	93	82	6	222	35	12	13	38	1.83
97571--97606	18	1.9	19	88	5	56	80	0	16	2	0.83
97830--97879	16	2.9	18	74	20	52	34	4	0	62	1.14
100799--100827	2	14.5	2	100	0	58	48	0	0	51	1.00
102206--102729	95	5.5	95	80	8	480	39	14	5	41	1.68
102283--102729	189	2.4	189	86	7	645	39	14	5	41	1.67
102577--102903	179	1.8	180	82	4	419	40	11	5	42	1.65
103281--103317	8	4.2	9	83	16	51	40	2	0	56	1.13
104225--104255	14	2.3	14	94	5	55	29	9	0	61	1.28
105791--105849	27	2.2	27	100	0	118	42	22	3	32	1.70
107168--107194	2	13.5	2	100	0	54	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107194--107223	2	15.0	2	100	0	60	50	0	0	50	1.00
108802--108873	36	2.0	36	97	0	135	37	13	31	16	1.88
109694--109910	94	2.3	94	100	0	434	35	22	14	27	1.93
112062--112102	14	2.7	15	82	17	50	75	0	19	4	0.98
114931--114958	8	3.5	8	100	0	56	50	10	0	39	1.37
115937--116001	32	2.2	31	81	10	73	26	13	15	44	1.84
118117--118145	2	14.5	2	100	0	58	51	0	0	48	1.00
118419--118445	2	13.5	2	100	0	54	48	0	0	51	1.00
123657--123697	21	2.0	21	85	9	57	63	0	7	29	1.21
125307--125368	30	2.1	29	87	3	88	51	6	12	29	1.65
126493--126520	2	14.0	2	100	0	56	50	0	0	50	1.00
127409--127442	13	2.6	13	90	9	52	14	2	2	79	0.97
128259--128291	2	17.0	2	93	6	59	48	0	0	51	1.00
129882--129913	6	5.3	6	96	0	55	56	15	0	28	1.40
130508--130539	2	16.0	2	100	0	64	50	0	0	50	1.00
131423--131457	13	2.7	13	91	8	54	14	2	2	80	0.95
137874--137937	9	7.1	9	72	13	51	71	4	1	21	1.12
137887--137931	17	2.6	17	80	10	56	68	6	2	22	1.24
138749--138803	11	5.0	11	72	16	51	50	7	1	40	1.40
138749--138820	33	2.2	32	85	9	92	54	6	2	36	1.42
143996--144066	27	2.6	27	86	6	99	23	7	22	46	1.76
148469--148539	27	2.6	27	86	6	99	23	7	22	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151377--151422	20	2.2	20	84	3	56	63	4	0	32	1.14
152625--152663	19	2.1	19	85	9	53	53	7	2	35	1.43
152641--152680	20	2.0	20	85	5	53	50	2	2	45	1.28
153165--153206	20	2.1	20	86	8	59	52	0	0	47	1.00
153351--153614	129	2.0	129	92	3	442	34	9	4	50	1.56
154391--154492	29	3.4	30	71	16	86	50	6	13	28	1.67
155344--155420	30	2.6	28	79	6	82	32	7	3	55	1.47
157268--157293	2	13.0	2	100	0	52	50	0	0	50	1.00
159329--159408	16	4.8	17	74	6	65	45	10	5	40	1.60
159329--159375	18	2.7	18	83	6	62	48	12	2	36	1.53
163655--163719	17	3.9	17	85	2	78	41	13	9	35	1.77
163655--163733	33	2.4	34	82	4	90	41	12	7	37	1.72
163680--163734	17	3.2	18	77	12	62	40	12	3	43	1.60
166067--166123	28	2.0	28	93	0	96	36	1	7	54	1.38
166610--166790	70	2.6	70	84	2	222	30	16	11	42	1.82
169157--169266	6	18.7	6	68	16	61	38	3	0	57	1.23
169149--169190	18	2.2	20	87	8	61	42	2	0	54	1.13
169158--169266	31	3.5	30	70	21	82	37	3	0	57	1.22
170664--170712	14	3.3	15	75	25	50	36	0	4	59	1.17
174744--174777	18	1.9	18	88	5	52	52	8	2	35	1.47
175552--175605	15	3.6	15	77	22	60	35	0	5	59	1.21
175547--175590	15	2.8	16	83	13	56	38	0	4	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176210--176243	18	1.9	18	94	5	61	52	5	2	38	1.41
176978--177028	15	3.4	15	76	23	54	35	0	5	58	1.22
179394--179423	15	1.9	16	93	6	53	6	13	3	76	1.11
187097--187158	23	2.7	23	89	0	88	20	12	20	45	1.84
188258--188285	2	14.0	2	100	0	56	50	0	0	50	1.00
191788--191816	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1

The End!