Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2349
Parameters: 2 7 7 80 10 50 1000
Length:  43140

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1712--1750
20
2.0
20
85
10
53
74
10
2
12
1.17
3731--3792
27
2.3
27
85
2
79
48
9
8
33
1.65
3760--3802
18
2.4
18
77
11
52
55
9
2
32
1.44
4833--4947
57
2.0
57
96
0
212
50
6
9
33
1.60
4963--5012
15
3.1
16
75
18
59
54
0
0
46
1.00
4987--5047
19
3.2
19
79
11
63
55
0
0
44
0.99
4976--5047
37
2.0
34
81
7
81
54
0
0
45
0.99
5011--5048
19
2.0
20
94
5
69
55
0
0
44
0.99
6546--6642
47
2.1
47
88
7
144
55
1
0
43
1.06
6598--6633
18
1.9
19
88
5
56
55
0
0
44
0.99
6852--6979
47
2.7
47
90
0
184
41
6
17
34
1.75
8166--8204
2
19.5
2
100
0
78
48
0
0
51
1.00
9593--9637
2
22.5
2
100
0
90
48
0
0
51
1.00
10732--10796
21
3.0
21
72
2
58
38
3
9
49
1.51
13192--13882
91
7.7
90
79
8
538
38
12
16
32
1.86
13168--13837
178
3.8
178
79
6
563
38
12
16
32
1.86
13184--13859
268
2.5
267
81
6
721
38
12
16
32
1.86
13329--13850
177
2.9
177
82
6
490
38
12
16
32
1.86
21839--21876
20
1.9
20
94
0
67
31
15
10
42
1.81
37047--37443
28
13.6
28
80
7
382
30
30
16
21
1.96
37099--37381
32
9.5
32
81
9
219
30
30
16
22
1.96
37047--37438
57
6.7
57
82
6
387
30
30
16
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37047--37443
85
4.5
85
80
8
431
30
30
16
21
1.96
37550--37669
49
2.5
48
85
5
147
20
25
20
32
1.97
42798--42830
15
2.3
15
90
10
52
75
0
6
18
1.00

Tables:   1

The End!