Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold235
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 318222
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
File 1 of 2
Found at i:1098 original size:14 final size:15
Alignment explanation
Indices: 1065--1098 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
1055 GATAAAAATG
1065 TCCAAATGAGGAAGC
1 TCCAAATGAGGAAGC
1080 T-CAAATGA-GAAGC
1 TCCAAATGAGGAAGC
1093 TCCAAA
1 TCCAAA
1099 CAAAATTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.33
14 11 0.61
15 1 0.06
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.15
Consensus pattern (15 bp):
TCCAAATGAGGAAGC
Found at i:7297 original size:476 final size:473
Alignment explanation
Indices: 6514--7906 Score: 1794
Period size: 476 Copynumber: 2.9 Consensus size: 473
6504 TAAGCTTTCA
* *
6514 GAACCAAAAATGCATTCCCTTCATTAGGATACATGACATTTATGCTTTGGTAATGCAAAAAATGC
1 GAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAATGC
* * *
6579 TTTTATTTCCACCGTTTTTGAAAGAATCAAAGTTTG-TCATTCAAATAAAAGAAACTAGAATG-G
66 TTTTATTACCACCGTTTTTGATAGAATCAAAGTTTGCTC-TT-AAATAAGAGAAACTAGAA-GAG
* * *
6642 TCAAACTAATTCCTTTTTTTTCAAGATTAGGCACCACAAATGTAGTCTTCTCATAAGGATACACG
128 TCAAACTAATCCCTTTTTTTTCAAGATCAGGCACCATAAATGTAGTCTTCTCATAAGGATACACG
** * * * * * *
6707 ATATTGATGCGTTGGTTTTGAAAGAAATGCTTTCTACCCCCCAATTTTTGTAAAGTCGGACTTCG
193 ATATTGACACTTTGG-TTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTACG
** * * *
6772 TGCCTCAAATGAGACAAACCCAGATCCTAGTAATGACCTTTATTCATTTTGTGATTAGGTACTAT
257 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
*
6837 AAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTT
322 AAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * *
6902 CGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAGCATTGATGCTCATAACAG
387 TGCCTTATTTACCTTAAAAACAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCATAACAG
* *
6967 TTCCCATTCTTTTCTAGATTGG
452 TTCCCATTCCTTTCAAGATTGG
* *
6989 GAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAATGC
1 GAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAATGC
* *
7054 TTTTATTACCACCGTTTTTGATAGAATCAACGTTTGCCTCTTAAATAAGACAAACGT-GAAGAGT
66 TTTTATTACCACCGTTTTTGATAGAATCAAAGTTTG-CTCTTAAATAAGAGAAAC-TAGAAGAGT
* *
7118 CAAACTAATCCCTATTTTTTTCAAGATCAGGCACCATTAA-GATAGTCTTCTCGTAAGGATACAC
129 CAAACTAATCCCT-TTTTTTTCAAGATCAGGCACCATAAATG-TAGTCTTCTCATAAGGATACAC
* * * *
7182 TATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTCC
192 GATATTGACACTTTGGTTT-GAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTAC
* ** *
7247 GTACCTCAAATGAGACAAATGTAGATTCTAGTAATAACCTTCATTCATTTTGTGATTAGGCACTA
256 GTGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTA
* * *
7312 TAAACACATTCTTCACATTAAGATAAAGAACAATGATGATTTTCTTTTGCATGAAAATCTTTTCT
321 TAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * * * *
7377 TTGCCTTATTTGCCTTAAAAAAAAAAGTTCATCGCTTAAATAAGATAAGCATCGATTCTCGTAAC
386 TTGCCTTATTTACCTT-AAAAACAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCATAAC
7442 AGTTCCCATTCCTTTCAAGATTGG
450 AGTTCCCATTCCTTTCAAGATTGG
* * * * *
7466 GAACTAAAAACACATTCCTTTTATTAGGATACACGACATTGATGCTTTGGTAATGCAAAAAA-GC
1 GAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAATGC
* * * * * ** * *
7530 TTTTCTCACAACTGTTTTTGATACAATCAAAGTTTGTCTCCAAAATAAGAGAAGCTAGAATAGTC
66 TTTTATTACCACCGTTTTTGATAGAATCAAAGTTTG-CTCTTAAATAAGAGAAACTAGAAGAGTC
** * * * *
7595 GTACTAA-ACCTTGTTCTTTTCAAGA-CAAGGCTCCATAAATGTAGGCTTCTCATAAGGATGCAC
130 AAACTAATCCCTT-TT-TTTTCAAGATC-AGGCACCATAAATGTAGTCTTCTCATAAGGATACAC
* * * *
7658 GATATTGATGA-TTTGGTATTGAAAGAAAGGCTTTCTTCCCTCTAATTTTTGTAAAGTCTAACTA
192 GATATTGA-CACTTTGGT-TTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTA
* * * *
7722 CGTGGCTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACT
255 CGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
* *
7787 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATTATTTTCTTTTGCATGAAAATGTTTTC
320 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTC
* * * * * **
7852 TTTACCCTCTTTACCTTAAAACCAAAGTTTATCCCTTAAATAAGGTAAGCATCGA
385 TTTGCCTTATTTACCTTAAAAACAAAGTTCATCCCTTAAATAAGACAAGCATCGA
7907 GTCTAGTAGA
Statistics
Matches: 797, Mismatches: 106, Indels: 30
0.85 0.11 0.03
Matches are distributed among these distances:
474 2 0.00
475 166 0.21
476 506 0.63
477 123 0.15
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34
Consensus pattern (473 bp):
GAACCAAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAATGC
TTTTATTACCACCGTTTTTGATAGAATCAAAGTTTGCTCTTAAATAAGAGAAACTAGAAGAGTCA
AACTAATCCCTTTTTTTTCAAGATCAGGCACCATAAATGTAGTCTTCTCATAAGGATACACGATA
TTGACACTTTGGTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTACGTGCC
TCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
TTATTTACCTTAAAAACAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCATAACAGTTCC
CATTCCTTTCAAGATTGG
Found at i:8229 original size:362 final size:362
Alignment explanation
Indices: 7554--8257 Score: 930
Period size: 362 Copynumber: 1.9 Consensus size: 362
7544 TTTTTGATAC
* * * * **
7554 AATCAAAGTTTGTCTCCAAAATAAGAGAAGCTAGAATAGTCGTACTAAACCTTGTTCTTTTCAAG
1 AATCAAAGTTTGTCTCCAAAATAAGACAAACTAGAAGAGTCATACTAAACCTAATTCTTTTCAAG
* ** * * *
7619 ACAAGGCTCCATAAATGTAGGCTTCTCATAAGGATGCACGATATTGATGATTTGGTATTGAAAGA
66 ACAAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATATAGATGATTTGGTATTCAAAGA
* * * * * *
7684 AAGGCTTTCTTCCCTCTAATTTTTGTAAAGTCTAACTACGTGGCTCAAATGAGACAAACATGGAT
131 AAGCCTTTCTTCCCGCCAATTTTTGTAAAATCTAACTACATGCCTCAAATGAGACAAACATGGAT
*
7749 TCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAA
196 TCTAGCAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAA
** * * * * * *
7814 AGGATAATGATTATTTTCTTTTGCATGAAAATGTTTTCTTTACCCTCTTTACCTTAAAACCAAAG
261 AGGATAACAATGATTTTCTTTTACATGAAAATCTTCTCTTTACCATATTTACCTTAAAACCAAAG
* *
7879 TTTATCCCTTAAATAAGGTAAGCATCGAGTCTAGTAG
326 TTCATCCCTAAAATAAGGTAAGCATCGAGTCTAGTAG
** * *
7916 AATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCTAATTTTTTTCAA
1 AATCAAAGTTTGTCTCCAAAATAAGACAAACTA-GAAGAGTCATACTAAACCTAATTCTTTTCAA
** * * *
7980 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATAGATGCTTTGGT-TTCACAA
65 GACAAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATATAGATGATTTGGTATTCA-AA
* *
8044 GAGAGCCTATT-TTCCCGCCAATTTTTGTAAAATCTGAC-ATCATGCCTCAAATGAGACAAACAT
129 GAAAGCCT-TTCTTCCCGCCAATTTTTGTAAAATCTAACTA-CATGCCTCAAATGAGACAAACAT
* *
8107 GGATTCTAGTAATGACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
192 GGATTCTAGCAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
* * * *
8172 ATAAAGGATGACAATGATTTTCTTTTACATGGAAATCTTCTCTTTGCCATATTTACCTTAAAATC
257 ATAAAGGATAACAATGATTTTCTTTTACATGAAAATCTTCTCTTTACCATATTTACCTTAAAACC
8237 AAAGTTCATCCCTAAAATAAG
322 AAAGTTCATCCCTAAAATAAG
8258 ACAAACATCG
Statistics
Matches: 292, Mismatches: 46, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
361 5 0.02
362 285 0.98
363 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (362 bp):
AATCAAAGTTTGTCTCCAAAATAAGACAAACTAGAAGAGTCATACTAAACCTAATTCTTTTCAAG
ACAAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATATAGATGATTTGGTATTCAAAGA
AAGCCTTTCTTCCCGCCAATTTTTGTAAAATCTAACTACATGCCTCAAATGAGACAAACATGGAT
TCTAGCAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAA
AGGATAACAATGATTTTCTTTTACATGAAAATCTTCTCTTTACCATATTTACCTTAAAACCAAAG
TTCATCCCTAAAATAAGGTAAGCATCGAGTCTAGTAG
Found at i:8691 original size:838 final size:838
Alignment explanation
Indices: 7075--8744 Score: 2382
Period size: 838 Copynumber: 2.0 Consensus size: 838
7065 CCGTTTTTGA
* *
7075 TAGAATCAACGTTTGCCTCTTAAATAAGACAAACGTGAAGAGTCAAACTAATCCCTATTTTTTTC
1 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTTTTTTC
* * * * *
7140 AAGATCAGGCACCATTAAGATAGTCTTCTCGTAAGGATACACTATATTGACACTTTGGTTTCGCA
66 AAGATCAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATAGACACTTTGGTTTCACA
* * * * **
7205 AGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTCCGTACCTCAAATGAGACAAATGTA
131 AGAAAGCCTATTTTCCCACCAATTTTTGTAAAATCTGACTCCATACCTCAAATGAGACAAACATA
7270 GATTCTAGTAATAACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAAGA
196 GATTCTAGTAATAACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAAGA
** * * * *
7335 TAAAGAACAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTGCCTTAAAAAAA
261 TAAAGAACAACAATGATTTTCTTTTACATGAAAATCTTCTCTTTGCCATATTTACCTTAAAAAAA
* * * * * *
7400 AAAGTTCATCGCTTAAATAAGATAAGCATCGATTCTCGTAACAGTTCCCATTCCTTTCAAGATTG
326 AAAGTTCATCCCTAAAATAAGACAAACATCGATTCTCGTAACAATTCCCATTCCTTTCAAGATTA
* *
7465 GGAACTAAAAACACATTCCTTTTATTAGGATACACGACATTGATGCTTTGGTAATGCAAAAAAGC
391 GGAACCAAAAACACATTCCTTTTATTAGGATACAAGACATTGATGCTTTGGTAATGCAAAAAAGC
* * * *
7530 TTTTCTCACAACTGTTTTTGATACAATCAAAGTTTGTCTCCAAAATAAGAGAAGCTAGAATAGTC
456 TTTTCTCACAACCGTTTCTGATACAATCAAAGTTTGCCTCCAAAATAAGAGAAGCTAGAATAGCC
* * * * * * **
7595 GTACTAAACCTTGTTCTTTTCAAGACAAGGCTCCATAAATGTAGGCTTCTCATAAGGATGCACGA
521 ATACTAAACCATATTCTTTTCAAGACAAGACACCACAAACATAGGCTTCTCATAAGGATGCACGA
7660 TATTGATGATTTGGTATTGAAAGAAAGGCTTTCTTCCCTCTAATTTTTGTAAAGTCTAACTACGT
586 TATTGATGATTTGGTATTGAAAGAAAGGCTTTCTTCCCTCTAATTTTTGTAAAGTCTAACTACGT
* *
7725 GGCTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATA
651 GACTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTACA
* * * * *
7790 AACACATTCTTCACATTAGGATAAAGGATAATGATTATTTTCTTTTGCATGAAAATGTTTTCTTT
716 AACACATTCTCCACATTAAGATAAAGGATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
* * **
7855 ACCCTCTTTACCTTAAAACCAAAGTTTATCCCTTAAATAAGGTAAGCATCGAGTCTAG
781 ACCCTATTTACCTTAAAACCAAAGTTCATCCCTTAAATAAGACAAGCATCGAGTCTAG
* *
7913 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAAT-CCTAATTTTTTT
1 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCT-ATTTTTTT
* **
7977 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATAGATGCTTTGGTTTCAC
65 CAAGATCAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATAGACACTTTGGTTTCAC
* * *
8042 AAGAGAGCCTATTTTCCCGCCAATTTTTGTAAAATCTGACAT-CATGCCTCAAATGAGACAAACA
130 AAGAAAGCCTATTTTCCCACCAATTTTTGTAAAATCTGAC-TCCATACCTCAAATGAGACAAACA
* * * *
8106 TGGATTCTAGTAATGACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAG
194 TAGATTCTAGTAATAACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAA
* ** *
8171 GATAAAGGATGACAATGATTTTCTTTTACATGGAAATCTTCTCTTTGCCATATTTACCTT-AAAA
259 GATAAAGAACAACAATGATTTTCTTTTACATGAAAATCTTCTCTTTGCCATATTTACCTTAAAAA
** *
8235 TCAAAGTTCATCCCTAAAATAAGACAAACATCGATTCTCGTAACAA-TCTCCATTCTTTTCAAGA
324 AAAAAGTTCATCCCTAAAATAAGACAAACATCGATTCTCGTAACAATTC-CCATTCCTTTCAAGA
* * * *
8299 TTAGGAACCAAAAACATATTCCTTTCT-TTAGGATATAAGACATTGATGCTTTGGTGATGTAGAA
388 TTAGGAACCAAAAACACATTCCTTT-TATTAGGATACAAGACATTGATGCTTTGGTAATGCA-AA
* * * ** *
8363 AAAGCTTTTCTTACCACCGTTTCTGATAGAATCAAAGTTTGCCTCTTACATAAGAGAAGCTAGAA
451 AAAGCTTTTCTCACAACCGTTTCTGATACAATCAAAGTTTGCCTCCAAAATAAGAGAAGCTAGAA
* * ** *
8428 TAGCCATACTATACCATATTCTTTTCAGGATTAGACACCACAAACATAGTCTTCTCATAAGGATG
516 TAGCCATACTAAACCATATTCTTTTCAAGACAAGACACCACAAACATAGGCTTCTCATAAGGATG
* * *
8493 CACGATATTGATGCTTTGGTTTTGAAAGAATGGCTTTCTTCCC-CTTAATTTTTGTAAAGTCTAA
581 CACGATATTGATGATTTGGTATTGAAAGAAAGGCTTTCTTCCCTC-TAATTTTTGTAAAGTCTAA
* *
8557 CTACGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGC
645 CTACGTGACTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGC
* *
8622 ACTACAAACACATTCTCCACATTAATATAAAGTG-TAAGGATGATTTTCTTTTGCATGGAAATCT
710 ACTACAAACACATTCTCCACATTAAGATAAAG-GATAAGGATGATTTTCTTTTGCATGAAAATCT
* **
8686 TTTCTTTACCTTATTTACCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATCGA
774 TTTCTTTACCCTATTTACCTTAAAACCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
8745 TCCTCGTAAC
Statistics
Matches: 731, Mismatches: 94, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
836 2 0.00
837 113 0.15
838 614 0.84
839 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (838 bp):
TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTTTTTTC
AAGATCAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATAGACACTTTGGTTTCACA
AGAAAGCCTATTTTCCCACCAATTTTTGTAAAATCTGACTCCATACCTCAAATGAGACAAACATA
GATTCTAGTAATAACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAAGA
TAAAGAACAACAATGATTTTCTTTTACATGAAAATCTTCTCTTTGCCATATTTACCTTAAAAAAA
AAAGTTCATCCCTAAAATAAGACAAACATCGATTCTCGTAACAATTCCCATTCCTTTCAAGATTA
GGAACCAAAAACACATTCCTTTTATTAGGATACAAGACATTGATGCTTTGGTAATGCAAAAAAGC
TTTTCTCACAACCGTTTCTGATACAATCAAAGTTTGCCTCCAAAATAAGAGAAGCTAGAATAGCC
ATACTAAACCATATTCTTTTCAAGACAAGACACCACAAACATAGGCTTCTCATAAGGATGCACGA
TATTGATGATTTGGTATTGAAAGAAAGGCTTTCTTCCCTCTAATTTTTGTAAAGTCTAACTACGT
GACTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTACA
AACACATTCTCCACATTAAGATAAAGGATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
ACCCTATTTACCTTAAAACCAAAGTTCATCCCTTAAATAAGACAAGCATCGAGTCTAG
Found at i:9093 original size:477 final size:475
Alignment explanation
Indices: 7913--9119 Score: 1694
Period size: 476 Copynumber: 2.5 Consensus size: 475
7903 TCGAGTCTAG
* * * *
7913 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCTAATTT-TTT
1 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCTA-GAATAGCCATACTAAACC--ATTTCTTT
* * * * *
7976 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATAGATGCTTTGG-TTTC
63 TCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCACGATATAGATGCTTTGGTTTTG
* * *
8040 ACAAGAGA-GCCTATT-TTCCCGCCAATTTTTGTAAAATCTGACATCATGCCTCAAATGAGACAA
128 A-AAGA-ATGGCT-TTCTTCCCCCCAATTTTTGTAAAATCTGACTTCATGCCTCAAATGAGACAA
8103 ACATGGATTCTAGTAATGACCTTCATTT-ATTTTGTGATTAGGCACTATAAACACATTCTTCACA
190 ACATGGATTCTAGTAATGACCTTC-TTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
* * *
8167 TTAGGATAAAGGATGACAATGATTTTCTTTTACATGGAAATCTTCTCTTTGCCATATTTACCTTA
254 TTAAGATAAAGGATAACAATGATTTTCTTTTACATGGAAATCTTCTCTTTACCATATTTACCTTA
*
8232 AAATCAAAGTTCATCCCTAAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCAA
319 AAATCAAAGTTCATCCCTAAAATAAGACAAACATCGATCCTCGTAACAATCTCCATTCTTTTCAA
* * * * * *
8297 GATTAGGAACCAAAAACATATTCCTTTCTTTAGGATATAAGACATTGATGCTTTGGTGATGTAGA
384 GATTAGGAACCAAAAACACATTCCTTTCATTAGGATACAAGACATTGATGCTTTGGTAATGCAAA
8362 AAAAGCTTTTCTTACCACCGTTTCTGA
449 AAAAGCTTTTCTTACCACCGTTTCTGA
* * * *
8389 TAGAATCAAAGTTTGCCTCTTACATAAGAGAAGCTAGAATAGCCATACTATACCATATTCTTTTC
1 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCTAGAATAGCCATACTAAACCAT-TTCTTTTC
* *
8454 AGGATTAGACACCACAAACATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAA
65 AGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCACGATATAGATGCTTTGGTTTTGAA
** * * * * *
8519 AGAATGGCTTTCTTCCCCTTAATTTTTGTAAAGTCTAACTACGTGACTCAAATGAGACAAACATG
130 AGAATGGCTTTCTTCCCCCCAATTTTTGTAAAATCTGACTTCATGCCTCAAATGAGACAAACATG
* * * * * *
8584 GATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTACAAACACATTCTCCACATTAATA
195 GATTCTAGTAATGACCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAAGA
** * * * *
8649 TAAAGTG-TAAGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTACCTTAAAATG
260 TAAAG-GATAACAATGATTTTCTTTTACATGGAAATCTTCTCTTTACCATATTTACCTTAAAATC
* * *
8713 AAAGTTCATCCCTTAAATAAGACAAGCATCGATCCTCGTAACAGT-TCCCATTCTTTTCAAGATT
324 AAAGTTCATCCCTAAAATAAGACAAACATCGATCCTCGTAACAATCT-CCATTCTTTTCAAGATT
*
8777 AGGAACCAAAAACACATT-CTCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAA
388 AGGAACCAAAAACACATTCCT-TTCATTAGGATACAAGACATTGATGCTTTGGTAATGCAAAAAA
* *
8841 AGCTTTTCTTACCACTGTTTTTTGA
452 AGCTTTTCTTACCACCG-TTTCTGA
*
8866 TAGAATCAAAGTTTGTCTCTTAAATAAGATAAGCTAGAATAGCCATACTAAACCATGTTCTTTTC
1 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCTAGAATAGCCATACTAAACCAT-TTCTTTTC
*
8931 AGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCACGATATCGATGCTTTGGTTTTGAA
65 AGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCACGATATAGATGCTTTGGTTTTGAA
* * * *
8996 AGAATGGCTTTCTTCCCCCCAATTTTTGTAAATTCTGACTTTATGCCACAAATGAGACAAACATT
130 AGAATGGCTTTCTTCCCCCCAATTTTTGTAAAATCTGACTTCATGCCTCAAATGAGACAAACATG
*
9061 GATTCTAGTAATGACCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCACA
195 GATTCTAGTAATGACCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
9120 AGCATCGATT
Statistics
Matches: 644, Mismatches: 76, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
474 2 0.00
475 10 0.02
476 389 0.60
477 243 0.38
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (475 bp):
TAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCTAGAATAGCCATACTAAACCATTTCTTTTCA
GGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCACGATATAGATGCTTTGGTTTTGAAA
GAATGGCTTTCTTCCCCCCAATTTTTGTAAAATCTGACTTCATGCCTCAAATGAGACAAACATGG
ATTCTAGTAATGACCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAAGAT
AAAGGATAACAATGATTTTCTTTTACATGGAAATCTTCTCTTTACCATATTTACCTTAAAATCAA
AGTTCATCCCTAAAATAAGACAAACATCGATCCTCGTAACAATCTCCATTCTTTTCAAGATTAGG
AACCAAAAACACATTCCTTTCATTAGGATACAAGACATTGATGCTTTGGTAATGCAAAAAAAGCT
TTTCTTACCACCGTTTCTGA
Found at i:9403 original size:858 final size:857
Alignment explanation
Indices: 8258--9962 Score: 2418
Period size: 858 Copynumber: 2.0 Consensus size: 857
8248 CTAAAATAAG
* * * * *
8258 ACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGAACCAAAAACATATTCCTT
1 ACAAACATCGATTCTCATAACAATCTCCATTATTTTCAAGAATAGGAACCAAAAACACATTCCCT
* * *** * *
8323 TCTTTAGGATATAAGACATTGATGCTTTGGTGATGTAGAAAAAGCTTTTCTTACCACCGTTTCTG
66 TCATTAGGATACAAGACATTGATGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACCATTTCTG
* * * *
8388 ATAGAATCAAAGTTTGCCTCTTACATAAGAGAAGCTAGAATAGCCATACTATACCATATTCTTTT
131 ATAGAATCAAAGTTTACCTCTTAAATAAGAGAAACTACAATAGCCATACTATACCATATTCTTTT
* *
8453 CAGGATTAGACACCACAAACATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGA
196 CAAGATTAGACACCACAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
** *
8518 AAGAATGGCTTTCTTCCCCTTAATTTTTGTAAAGTCTAACTACGTGACTCAAATGAGACAAACAT
261 AAGAATGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTAACTACGTGACGCAAATGAGACAAACAT
* * * *
8583 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTACAAACACATTCTCCACATTAAT
326 GGATTCTAGTAATGACCTTCATTCAGTTTGTGATTAGGCACTACAAACACATTCTCCACATTAAG
*
8648 ATAAAGTG-TAAGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTACCTTAAAAT
391 ATAAAG-GATAAGGATGATTTTCTTTTGCATGGAAATCTTTT-TTTACCTTATTTACATTAAAAT
* * *
8712 GAAAGTTCATCCCTTAAATAAGACAAGCATCGATCCTCGTAACAGTTCCCATTCTTTTCAAGATT
454 CAAAGTTCATCCCTTAAATAAGACAAGCATAGATCCTCGCAACAGTTCCCATTCTTTTCAAGATT
*
8777 AGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAAA
519 AGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAAA
** *
8842 GCTTTTCTTACCACTGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAGCTAGAATA
584 GCTTTTCTTACCAC-CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATA
*
8907 GCCATACTAAACCATGTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCA
648 GCCATACTAAACCATGTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAACGATGCA
* *
8972 CGATATCGATGCTTTGGTTTTGAAAG-AATGGCTTTCTTCCCCCCAATTTTTGTAAAT-TCTGAC
713 CAATATCGATGCTTTGGCTTTGAAAGAAAT-GCTTTCTTCCCCCCAATTTTTGT-AATGTCTGAC
* * * * * * * *
9035 TTTATGCCACAAATGAGACAAACATTGATTCTAGTAATGACCTTCTTTCATTTTGTGATTAGGCA
776 TTCAAGCCACAAATGAGACAAACATAGATTCGAATAATGACCTTCATTCATTTTGAGATTAGACA
9100 CTATAAAAACATTCTTC
841 CTATAAAAACATTCTTC
* ** *
9117 ACAAGCATCGATTCTCATAACTCTCTCCATTATTTTCAAGAATGGGAACCAAAAACACATTCCCT
1 ACAAACATCGATTCTCATAACAATCTCCATTATTTTCAAGAATAGGAACCAAAAACACATTCCCT
* * * *
9182 TCATTAGGATACATG-CATTGATGCTTTGGTGACACAAAAAAAGCTTTTTTTACCACTATTTTTG
66 TCATTAGGATACAAGACATTGATGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACCATTTCTG
* * *
9246 ATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTACAATAGTCATACTA-ATCCCTATTCTTT
131 ATAGAATCAAAGTTTACCTCTTAAATAAGAGAAACTACAATAGCCATACTATA-CCATATTCTTT
* ** *
9310 TCAAGATTTGGA-ACCGTAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTT
195 TCAAGA-TTAGACACCACAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT
* * * * *
9374 GAAAGAAAT-GCTTT-TTCCCCCCCAATTTTTGTAAAGTTTGACTTCGTGCCGCAATTGAGACAA
259 GAAAG-AATGGCTTTCTT-CCCCCCAATTTTTGTAAAGTCTAACTACGTGACGCAAATGAGACAA
* * * *
9437 ACATGGATTTTAGTAATGACCTTCATTCAGTTTGTGATTAGGCACTATAAACACTTTCTTCACAT
322 ACATGGATTCTAGTAATGACCTTCATTCAGTTTGTGATTAGGCACTACAAACACATTCTCCACAT
* * *
9502 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTTTTGCCTTATTTACATTAAA
387 TAAGATAAAGGATAAGGATGATTTTCTTTTGCATGGAAATCTTTTTTTACCTTATTTACATTAAA
* * *
9567 ATCAAATTTCATCCCTTAAATAAGACAAGCATAGATTCTTGCAACAGTTCCCATTCTTTTCAAGA
452 ATCAAAGTTCATCCCTTAAATAAGACAAGCATAGATCCTCGCAACAGTTCCCATTCTTTTCAAGA
* * * * * *
9632 TTGGGAACCAAAAACGCATTCCCTTCATTAGGGTACTTGACATTGATGCTTTGGTGATTCAAAAA
517 TTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAA
*
9697 AAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAAT
582 AAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAAT
* * * * * **
9762 AGTCATGCTAAACCTTGTTCTTTTCAGGATTGGGCACCATAAATGTAGTCTTCTCATAACGATGC
647 AGCCATACTAAACCATGTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAACGATGC
* * *
9827 ACAATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCTCCCTAATTTTTGTAATGTCTGACT
712 ACAATATCGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACT
** * *
9892 TCAAGCCTTAAATGAGACAAACCTAGATTCGAATAATGATCTTCATTCATTTTGAGATTAGACAC
777 TCAAGCCACAAATGAGACAAACATAGATTCGAATAATGACCTTCATTCATTTTGAGATTAGACAC
9957 TATAAA
842 TATAAA
9963 CACCTTCACC
Statistics
Matches: 744, Mismatches: 95, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
855 3 0.00
856 214 0.29
857 157 0.21
858 295 0.40
859 75 0.10
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (857 bp):
ACAAACATCGATTCTCATAACAATCTCCATTATTTTCAAGAATAGGAACCAAAAACACATTCCCT
TCATTAGGATACAAGACATTGATGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACCATTTCTG
ATAGAATCAAAGTTTACCTCTTAAATAAGAGAAACTACAATAGCCATACTATACCATATTCTTTT
CAAGATTAGACACCACAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
AAGAATGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTAACTACGTGACGCAAATGAGACAAACAT
GGATTCTAGTAATGACCTTCATTCAGTTTGTGATTAGGCACTACAAACACATTCTCCACATTAAG
ATAAAGGATAAGGATGATTTTCTTTTGCATGGAAATCTTTTTTTACCTTATTTACATTAAAATCA
AAGTTCATCCCTTAAATAAGACAAGCATAGATCCTCGCAACAGTTCCCATTCTTTTCAAGATTAG
GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTAATGCAAAAAAAGC
TTTTCTTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGCC
ATACTAAACCATGTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAACGATGCACAA
TATCGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTTCAA
GCCACAAATGAGACAAACATAGATTCGAATAATGACCTTCATTCATTTTGAGATTAGACACTATA
AAAACATTCTTC
Found at i:10247 original size:476 final size:475
Alignment explanation
Indices: 9117--13298 Score: 5143
Period size: 476 Copynumber: 8.8 Consensus size: 475
9107 AACATTCTTC
** ** * *
9117 ACAAGCATCGATTCTCATAACTCTCTCCATTATTTTCAAGAATGGGAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * **
9182 TCATTAGGATACATG-CATTGATGCTTTGGTGACACAAAAAAAGCTTTTTTTACCACTATTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * * *
9246 ATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTACAATAGTCATACTAATCCCTATTCTTTT
131 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACT-GAAGAGTCATGCTAATCCCTATTCTTTT
* * * **
9311 CAAGATTTGGAACCGTAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTTGA
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGA
* * * * *
9376 AAGAAATGCTTT-TTCCCCCCCAATTTTTGTAAAGTTTGACTTCGTGCCGCAATTGAGACAAACA
260 AAGAAAGGCTTTCTT-CCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACA
* * * *
9440 TGGATTTTAGTAATGACCTTCATTCAGTTTGTGATTAGGCACTATAAACACTTTCTTCACATTAG
324 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAG
*
9505 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTT-TTTGCCTTATTTACATTAAAAT
389 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
*
9569 CAAATTTCATCCCTTAAATAAG
454 CAAAGTTCATCCCTTAAATAAG
* * *
9591 ACAAGCATAGATTCTTGCAACAGT-TCCCATTCTTTTCAAGATTGGGAACCAAAAACGCATTCCC
1 ACAAGCATCGATTCTTGTAACAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * ** * *
9655 TTCATTAGGGTACTTGACATTGATGCTTTGGTGATTCAAAAAAAGCTTTTCTTTCCACCATTTTT
65 TTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTT
* * * * *
9720 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATGCTAAACCTTGTTCTTT
130 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACT-GAAGAGTCATGCTAATCCCTATTCTTT
* * ** * * *
9785 TCAGGATTGGGCACCATAAATGTAGTCTTCTCATAACGATGCACAATATTGATGCTTTGGCTTTG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG
* * * * * * *
9850 AAAGAAATGCTTTCTTCTCCCTAATTTTTGTAATGTCTGACTTCAAGCCTTAAATGAGACAAACC
259 AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACA
* * * * * * * * * *
9915 TAGATTCGAATAATGATCTTCATTCATTTTGAGATTAGACACTATAAACACCTTCACCTCATTCG
324 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAG
* * ** * * *
9980 GATAAATGTTCTTGACGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTAACCTTAAAAT
389 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
10045 CAAAGTTCATCCCTTAAATAAG
454 CAAAGTTCATCCCTTAAATAAG
* ** * * * *
10067 GCAAGCATCGAGGCTTGTAATAGTCTTCATTCTCTTCAAGATTGGGAACCAAAAACACATTTCCT
1 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * * * * *
10132 TCATTAGTACACCTAACATTGATGCTATGGTGTCGTAGAAAAAGCTTTTCTTACCACCGTTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * *
10197 ATAGAATCAACA-TTTGTCGCTCAAATAAGGGAAACATGAAGAGTCATGCTAATCCCTA-TCTTT
131 ATAGAATCAA-AGTTTGTCTCTTAAATAAGAGAAAC-TGAAGAGTCATGCTAATCCCTATTC-TT
* *
10260 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGTTTTGGTTTT
193 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTT
* *
10325 GAACA-AAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCCG-CTTCATGCCTCAAATGAGGCAAA
258 GAA-AGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAA
* * * * *
10388 CATTGATTCTGGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACGTTTTCCACATT
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATT
** *
10453 AATATAAAGTG-TAAGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
387 AGGATAAAG-GATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
10517 AATCAAAGTTCATCCCTTAAATAAG
451 AATCAAAGTTCATCCCTTAAATAAG
* * **
10542 ATAAGCATCGATCCTACTAACAGT-TCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
1 ACAAGCATCGATTCTTGTAACAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
*
10606 TTCATTAGGATACATGACATTGATGCTTTGGTAACGCAAAAAAAG-TTTTCTTACCACCGTTTTT
65 TTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTT
* * * * * *
10670 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCT-AGAGTAGCCATACTAAACCTTGTTCTT
130 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTGA-AG-AGTCATGCTAATCCCTATTCTT
* * * * * * * * *
10734 TTTAGGGTTAGGCACCACAAACATAGTTTTCGCATAAGGATGCACGATATTAATGCTTTGGTTTT
193 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTT
* * *
10799 GAAAGAAGGGCTTTCTTCCCCCCAATTTTTGTAAATTCTGACTTCGTGCCTCAAATGAGACAAAC
258 GAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAAC
* * * * * * * *
10864 ATTGATTCTAGTAATGATCTTCATTTATTTTGAGATTAGACAAC-ATAAACACCTTCTCCTCTTT
323 ATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGC-ACTATAAACACATTCTCCACATT
* * ** * * * *
10928 AGGATAAATGTTCTTGATGATTTTCTTTTGCCTGAAAATCTATTCTTTGCCCTATTTACCTTAAA
387 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
*
10993 ATCAAAGTTCATCCCTTACATAAG
452 ATCAAAGTTCATCCCTTAAATAAG
* *** * * * * *
11017 GCAAGCATCGAGGGTCGTAATAGTCTCTATTCTTTTCAAGATTGGGAACCAAACACACATTTCCT
1 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * * *
11082 TCATTAGTATACCTGACATTGATGCTATGGTGACGTAGAAAAAGCTTTTCTTACCACCGATTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * *
11147 ATAGAATCAACGTTTGTCTCTCAAATAAG-GCAAACGTGAAGAGTCATGCTAATCCCTATTGTTT
131 ATAGAATCAAAGTTTGTCTCTTAAATAAGAG-AAAC-TGAAGAGTCATGCTAATCCCTATTCTTT
* *
11211 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGACGCTTTGGTTTTG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG
* * * *
11276 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACA
259 AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACA
* *
11341 TGGATTCTAGTAATGACCTTTATTCATTTTGTGATTAGGCACTATAAGCACATTCTTCC-CATTA
324 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCACATTA
* *
11405 GGATAAAGGATAATGATGATTTTCTTTCGCATGGAAATCTTTTCATTGCCTTATTTACCTTAAAA
388 GGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA
11470 TCAAAGTTCATCCCTTAAATAAG
453 TCAAAGTTCATCCCTTAAATAAG
* ** *
11493 ACAAGTATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * ** * *
11558 TCATCAGGATGCATGACATTGTTGCTTTGGTGATACAAAAAATGCTTTTCTTACAACCGTTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * *
11623 ATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAGTGTCATGCTAATCCCTATTCTTCT
131 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TGAAGAGTCATGCTAATCCCTATTCTT-T
* * * * * *
11688 T-AAGATTTGGCACCATAAACATAGTCTTCTCATATGAATACAAAATATTGATGCTTTGGTCTCG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG
* * * *
11752 TAAGAAAGACTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACA
259 AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACA
* *
11817 TGGATTCTAGTAATGACCTTCCTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAG
324 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAG
* * *
11882 GATAAAGGATAGTGATGATTTT-TTTTGCACGGAAATCTTTTCGTTGCCTTATTTACCTTAAAAT
389 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
11946 CAAAGTTCATCCCTTAAATAAG
454 CAAAGTTCATCCCTTAAATAAG
* * * * *
11968 ATAAGCATAGATTCTCGTAACAGT-TCCCATTCTTTTCAAGATTGGGAACTAAAAACACATTCCT
1 ACAAGCATCGATTCTTGTAACAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * *
12032 TTTAGTAGGATACATGACATTGATGCTTTAGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTT
65 TTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCG-TTTT
* * * * * *
12097 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTT
129 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACT-GAAGAGTCATGCTAATCCCTATTCTT
* * ** *
12162 TTTAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATGCACAATATTGATGC------TTT
193 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTT
* *
12221 GAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTTCATGCCAT-AAATGAGACAAA
258 GAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCC-TCAAATGAGACAAA
* * * * * * *
12285 CCTGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGACACTATAAACACCTTCACCTCATT
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATT
* * * * * * *
12350 AGGATAAATGTTAATGATAATTTTCCTTTGCGTGGAAATCTTTTCTTTACCTTATCTACCTTAAA
387 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
* *
12415 ATCAAAGTTCATCCATTAAATGAG
452 ATCAAAGTTCATCCCTTAAATAAG
* * *
12439 GCAAGCATTGATTCTCT-TAACAGTCTCCATT-TATTTCAAGATTAGGAACCAAAAACACATTCC
1 ACAAGCATCGATTCT-TGTAACAGTCTCCATTCT-TTTCAAGATTGGGAACCAAAAACACATTCC
* * * * * *
12502 CTTCATTCGGATACAAGACATTAATGCTTTGGTAACGCAAAAAAAGCTTTTCTTTCCACCATTTT
64 CTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTT
* * * *
12567 TGATAGAATCAAAGTTTGCCTCTTAAA-ATAGACAAACGTGAAGAGTCATGCTAATCCCAATTTT
129 TGATAGAATCAAAGTTTGTCTCTTAAATA-AGAGAAAC-TGAAGAGTCATGCTAATCCCTATTCT
* * *
12631 TTTCAAGATAAGGCACCATAAACATAGTCTTC-CTATAAGGATACACTATATTAATGCTTTGGTT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACAATATTGATGCTTTGGTT
* * * * * * * * * *
12695 TCGTAGGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAACTACCTGGCTCAATTGAGGCAA
256 TTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAA
* * *
12760 ACATGGATTCTATTATTGGA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
321 ACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACA
* * * * *
12824 TTAGGATAAAGGATAATGATGATTTTTTTTTGCATGGAAATCTTCTCTTTGTCATATTTTCCTTA
385 TTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTA
* * *
12889 AAATCACAGTTCATCTCTTAAATATG
450 AAATCAAAGTTCATCCCTTAAATAAG
** * **
12915 ACAAGCATCGATTCTCATTAGTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCT
1 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * *
12979 TCATTAGGATACAAGGCATTGATGCTTTGGTGATGCATAAAAAGCTTTTCTTACCACCGTTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * *
13044 ATAGAATCAAAGTTTG-CTTCTTAAATAAGACAAACATGTAGAGTCATACTAATCCCTATTCTTT
131 ATAGAATCAAAGTTTGTC-TCTTAAATAAGAGAAAC-TGAAGAGTCATGCTAATCCCTATTCTTT
* * * *
13108 TCAACATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG
* * * * * *
13173 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACA
259 AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACA
* * * * *
13238 TGGATTCTAGAAATGGCCTTCATTCATATTGTGATTAGGCACTATAAACAAATTCTTCACA
324 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACA
13299 AGCGTCGATT
Statistics
Matches: 3169, Mismatches: 484, Indels: 109
0.84 0.13 0.03
Matches are distributed among these distances:
469 2 0.00
470 235 0.07
471 161 0.05
472 2 0.00
473 6 0.00
474 225 0.07
475 1236 0.39
476 1286 0.41
477 15 0.00
478 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTGAAGAGTCATGCTAATCCCTATTCTTTTC
AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAA
AGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACATG
GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGA
TAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCA
AAGTTCATCCCTTAAATAAG
Found at i:12002 original size:951 final size:951
Alignment explanation
Indices: 9140--13295 Score: 5144
Period size: 951 Copynumber: 4.4 Consensus size: 951
9130 CTCATAACTC
* * *
9140 TCTCCATTATTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATG-CATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGAT
* * ** *
9204 GCTTTGGTGACACAAAAAAAGCTTTTTTTACCACTATTTTTGATAGAATCAAAGTTTATCTCTTA
66 GCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * *
9269 AATAAGAGAAACTACAATAGTCATACTAATCCCTATTCTTTTCAAGATTTGGAACCGTAAACATA
131 AATAAG-GAAACT-GAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATA
* *
9334 GTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTTTCCCCCCCA
194 GTCTTCTCATAAGGATACACT-ATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCCCCA
* * * * * *
9398 ATTTTTGTAAAGTTTGACTTCGTGCCGCAATTGAGACAAACATGGATTTTAGTAATGACCTTCAT
258 ATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCAT
* *
9463 TCAGTTTGTGATTAGGCACTATAAACACTTTCTT-CACATTAGGATAAAGGATAATGATGATTTT
323 TCATTTTGTGATTAGGCACTATAAACACATTCTTCCACATTAGGATAAAGGATAATGATGATTTT
* *
9527 CTTTTGCATGGAAATCTTTT-TTTGCCTTATTTACATTAAAATCAAATTTCATCCCTTAAATAAG
388 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAG
* *** *
9591 ACAAGCATAGATTCTTGCAACAGTTCCCATTCTTTTCAAGATTGGGAACCAAAAACGCATTCCCT
453 ACAAGCATCGATTCTCATAACAGTTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * ** *
9656 TCATTAGGGTACTTGACATTGATGCTTTGGTGATTCAAAAAAAGCTTTTCTTTCCACCATTTTTG
518 TCATCAGGATACATGACATTGATGCTTTGGTAACGCAAAAAAAGCTTTTCTTACCACCATTTTTG
* * * *
9721 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAA-TAGTCATGCTAAACCTTGTTC-TT
583 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACT-GAAGTAGTCATGCTAAACCCTATTCTTT
* * ** * * *
9784 TTCAGGATTGGGCACCATAAATGTAGTCTTCTCATAACGATGCACAATATTGATGCTTTGG-CTT
647 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTAATGCTTTGGTC-T
* * * * * *
9848 TGAAAGAAATGCTTTCTTCTCCCTAATTTTTGTAATGTCTGACTTCAAGCCTTAAATGAGACAAA
711 CGAAAGAAAGGCTTTCTTC-CCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAA
* * * * * * *
9913 CCTAGATTCGAATAATGATCTTCATTCATTTTGAGATTAGACACTATAAACACCTTCACCTCATT
775 CATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGACACTATAAACACATTCTCCACATT
* * * * * * *
9978 CGGATAAATGTTCTTGACGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTAACCTTAAA
840 AGGATAAAGGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTTATTTACCTTAAA
* *
10043 ATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGAGGCTTGTAATAG
905 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAGGCTCGTAATAG
* * * * * *
10090 TCTTCATTCTCTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGTACACCTAACATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGAT
* * * * * *
10155 GCTATGGTGTCGTAGAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAACA-TTTGTCGCTC
66 GCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAA-AGTTTGTCTCTT
*
10219 AAATAAGGGAAACATGAAGAGTCATGCTAATCCCTA-TCTTTTTCAAGATTAGGCACCATAAACA
130 AAATAA-GGAAAC-TGAAGAGTCATACTAATCCCTATTC-TTTTCAAGATTAGGCACCATAAACA
* *
10283 TAGTCTTCTCATAAGGATACACTATATTGATGTTTTGGTTTTGAACA-AAAGGCTTTCTTCCCCC
192 TAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAA-AGAAAGGCTTTTTTCCCCC
** * * * *
10347 CAATTTTTGTAAAGTC-CGCTTCATGCCTCAAATGAGGCAAACATTGATTCTGGTAATGATCTTC
256 CAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTC
* ** *
10411 ATTCATTTTGTGATTAGGCACTATAAACACGTT-TTCCACATTAATATAAAGTG-TAAGGATGAT
321 ATTCATTTTGTGATTAGGCACTATAAACACATTCTTCCACATTAGGATAAAG-GATAATGATGAT
10474 TTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT
385 TTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT
* *
10539 AAGATAAGCATCGATCCT-ACTAACAGTTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATT
450 AAGACAAGCATCGATTCTCA-TAACAGTTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATT
* *
10603 CCCTTCATTAGGATACATGACATTGATGCTTTGGTAACGCAAAAAAAG-TTTTCTTACCACCGTT
514 CCCTTCATCAGGATACATGACATTGATGCTTTGGTAACGCAAAAAAAGCTTTTCTTACCACCATT
* * * * * *
10667 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCT-AGAGTAGCCATACTAAACCTTGTT
579 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTGA-AGTAGTCATGCTAAACCCTATT
* * * * * * *
10731 CTTTTT-AGGGTTAGGCACCACAAACATAGTTTTCGCATAAGGATGCACGATATTAATGCTTTGG
643 CTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTAATGCTTTGG
* * * * *
10795 TTTTGAAAGAAGGGCTTTCTTCCCCCCAATTTTTGTAAATTCTGACTTCGTGCCTCAAATGAGAC
708 TCTCGAAAGAAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGAC
* * * *
10860 AAACATTGATTCTAGTAATGATCTTCATTTATTTTGAGATTAGACAAC-ATAAACACCTTCTCCT
772 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGAC-ACTATAAACACATTCTCCA
* * * * * *
10924 CTTTAGGATAAATGTTCTTGATGATTTTCTTTTGC-CTGAAAATCTATTCTTTGCCCTATTTACC
836 CATTAGGATAAAGGATATTGATGATTTTCTTTTGCAC-GAAAATCTTTTCTTTGCCTTATTTACC
* * *
10988 TTAAAATCAAAGTTCATCCCTTACATAAGGCAAGCATCGAGGGTCGTAATAG
900 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAGGCTCGTAATAG
* * * *
11040 TCTCTATTCTTTTCAAGATTGGGAACCAAACACACATTTCCTTCATTAGTATACCTGACATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGAT
* * * * * *
11105 GCTATGGTGACGTAGAAAAAGCTTTTCTTACCACCGATTTTGATAGAATCAACGTTTGTCTCTCA
66 GCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
11170 AATAAGGCAAACGTGAAGAGTCATGCTAATCCCTATTGTTTTCAAGATTAGGCACCATAAACATA
131 AATAAGG-AAAC-TGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATA
* * *
11235 GTCTTCTCATAAGGATACACTATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAA
194 GTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCCCCAA
*
11300 TTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTTATT
259 TTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
*
11365 CATTTTGTGATTAGGCACTATAAGCACATTCTTCC-CATTAGGATAAAGGATAATGATGATTTTC
324 CATTTTGTGATTAGGCACTATAAACACATTCTTCCACATTAGGATAAAGGATAATGATGATTTTC
* *
11429 TTTCGCATGGAAATCTTTTCATTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGA
389 TTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* *
11494 CAAGTATCGATTCTCATAATAG-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
454 CAAGCATCGATTCTCATAACAGTTC-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * ** * * *
11558 TCATCAGGATGCATGACATTGTTGCTTTGGTGATACAAAAAATGCTTTTCTTACAACCGTTTTTG
518 TCATCAGGATACATGACATTGATGCTTTGGTAACGCAAAAAAAGCTTTTCTTACCACCATTTTTG
* * *
11623 ATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAGT-GTCATGCTAATCCCTATTCTTC
583 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGAAGTAGTCATGCTAAACCCTATTCTTT
* * * * *
11687 TT-AAGATTTGGCACCATAAACATAGTCTTCTCATATGAATACAAAATATTGATGCTTTGGTCTC
647 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTAATGCTTTGGTCTC
* * *
11751 GTAAGAAAGACTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAAC
712 GAAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAAC
* * * * *
11816 ATGGATTCTAGTAATGACCTTCCTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTA
776 ATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGACACTATAAACACATTCTCCACATTA
* * *
11881 GGATAAAGGATAGTGATGATTTT-TTTTGCACGGAAATCTTTTCGTTGCCTTATTTACCTTAAAA
841 GGATAAAGGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTTATTTACCTTAAAA
* * ** *
11945 TCAAAGTTCATCCCTTAAATAAGATAAGCATAGATTCTCGTAACAG
906 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGAGGCTCGTAATAG
* * *
11991 T-TCCCATTCTTTTCAAGATTGGGAACTAAAAACACA-TTCCTTTTAGTAGGATACATGACATTG
1 TCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGATACATGACATTG
*
12054 ATGCTTTAGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTTGATAGAATCAAAGTTTGTCTC
64 ATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCG-TTTTTGATAGAATCAAAGTTTGTCTC
* * * * * * * *
12119 TTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTTAGGATTAGGCACCATAAAT
128 TTAAATAAG-GAAACT-GAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAAC
* * * * *
12184 GTAGTCTTCTCATAAGGATGCACAATATTGATGC------TTTGAAAGAAATGCTTTCTTCCCCC
191 ATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCCC
* * * *
12243 CAATTTTTGTAATGTCTGACTTCATGCCAT-AAATGAGACAAACCTGGATTCTAGTAATGATCTT
256 CAATTTTTGTAAAGTCTAACTTCATGCC-TCAAATGAGACAAACATGGATTCTAGTAATGACCTT
* * * * * * * *
12307 CATTCATTTTGAGATTAGACACTATAAACACCTTC-ACCTCATTAGGATAAATGTTAATGATAAT
320 CATTCATTTTGTGATTAGGCACTATAAACACATTCTTCCACATTAGGATAAAGGATAATGATGAT
* * * * *
12371 TTTCCTTTGCGTGGAAATCTTTTCTTTACCTTATCTACCTTAAAATCAAAGTTCATCCATTAAAT
385 TTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * *
12436 GAGGCAAGCATTGATTCTCTTAACAG-TCTCCATT-TATTTCAAGATTAGGAACCAAAAACACAT
450 AAGACAAGCATCGATTCTCATAACAGTTC-CCATTCT-TTTCAAGATTGGGAACCAAAAACACAT
* * *
12499 TCCCTTCATTC-GGATACAAGACATTAATGCTTTGGTAACGCAAAAAAAGCTTTTCTTTCCACCA
513 TCCCTTCA-TCAGGATACATGACATTGATGCTTTGGTAACGCAAAAAAAGCTTTTCTTACCACCA
* * *
12563 TTTTTGATAGAATCAAAGTTTGCCTCTTAAA-ATAGACAAACGTGAAG-AGTCATGCTAATCCCA
577 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAAC-TGAAGTAGTCATGCTAAACCCT
* *
12626 ATT-TTTTTCAAGATAAGGCACCATAAACATAGTCTTC-CTATAAGGATACACTATATTAATGCT
640 ATTCTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACAATATTAATGCT
* * * * * * * *
12689 TTGGTTTCGTAGGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAACTACCTGGCTCAATTG
704 TTGGTCTCGAAAGAAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCATGCCTCAAATG
* * * * *
12754 AGGCAAACATGGATTCTATTATTGGA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
768 AGACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTTGAGATTAGACACTATAAACACATTC
* * * * * * * *
12818 TTCACATTAGGATAAAGGATAATGATGATTTTTTTTTGCATGGAAATCTTCTCTTTGTCATATTT
832 TCCACATTAGGATAAAGGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTTATTT
* * * * ** * *
12883 TCCTTAAAATCACAGTTCATCTCTTAAATATGACAAGCATCGATTCTCATTAGT-G
897 ACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAGGCTC-GTAATAG
* *
12938 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTCATTAGGATACAAGGCATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGAT
* *
13002 GCTTTGGTGATGCATAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTG-CTTCTT
66 GCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTC-TCTT
* * * *
13066 AAATAAGACAAACATGTAGAGTCATACTAATCCCTATTCTTTTCAACATTTGGCACCATAAACAT
130 AAATAAG-GAAAC-TGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACAT
* * * *
13131 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCA
193 AGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCCCCA
* * * *
13196 ATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGGATTCTAGAAATGGCCTTCAT
258 ATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCAT
* *
13261 TCATATTGTGATTAGGCACTATAAACAAATTCTTC
323 TCATTTTGTGATTAGGCACTATAAACACATTCTTC
13296 ACAAGCGTCG
Statistics
Matches: 2797, Mismatches: 348, Indels: 120
0.86 0.11 0.04
Matches are distributed among these distances:
944 1 0.00
945 117 0.04
946 592 0.21
947 112 0.04
948 4 0.00
949 6 0.00
950 755 0.27
951 845 0.30
952 359 0.13
953 5 0.00
954 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (951 bp):
TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGGAAACTGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGT
CTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCCCCAATT
TTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
TTTTGTGATTAGGCACTATAAACACATTCTTCCACATTAGGATAAAGGATAATGATGATTTTCTT
TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
AGCATCGATTCTCATAACAGTTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCA
TCAGGATACATGACATTGATGCTTTGGTAACGCAAAAAAAGCTTTTCTTACCACCATTTTTGATA
GAATCAAAGTTTGTCTCTTAAATAAGACAAACTGAAGTAGTCATGCTAAACCCTATTCTTTTTCA
AGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTAATGCTTTGGTCTCGAAA
GAAAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCATTTTGAGATTAGACACTATAAACACATTCTCCACATTAGGATA
AAGGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
GTTCATCCCTTAAATAAGACAAGCATCGAGGCTCGTAATAG
Found at i:13759 original size:383 final size:381
Alignment explanation
Indices: 12915--14057 Score: 1764
Period size: 383 Copynumber: 3.0 Consensus size: 381
12905 CTTAAATATG
* * * *
12915 ACAAGCATCGATTCTCATTAGTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCT
1 ACAAGCATCGATTCTTATAACTGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCT
* * *** * *
12979 TCATTAGGATACAAGGCATTGATGCTTTGGTGATGCATAAAAAGCTTTTCTTACCACCGTTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGGCACAAAAAAAGCTTTTCTTACCACCATTTTTG
* *
13044 ATAGAATCAAAGTTTGCTTCTTAAATAAGACAAACATGTAGAGTCATACTAATCCCTATTCTTTT
131 ATAGAATCAAAGTTTTC-TCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTT
* *
13109 CAACATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
195 CAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGC
*
13174 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACAT
260 AAGAAAGACTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACAT
* *
13239 GGATTCTAGAAATGGCCTTCATTCATATTGTGATTAGGCACTATAAACAAATTCTTC
325 GGATTCTAGAAATGACCTTCATTCATATTGTGATTAGGCACTATAAACACATTCTTC
*
13296 ACAAGCGTCGATTCTTATAACTGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTTATAACTGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCT
13361 TCATTAGGATACATGACATTGATGCTTTGGTGGCACAAAAAAAGCTTTTCTTACCACCATTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGGCACAAAAAAAGCTTTTCTTACCACCATTTTTG
* * *
13426 ATAGAATCAAAGTTTATCTCTTAAATAAGAGAAATC-GGAATAGTCATACTAATCCCTATTCTTT
131 ATAGAATCAAAGTTT-TCTCTTAAATAAGACAAA-CATGAAGAGTCATACTAATCCCTATTCTTT
**
13490 TCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATAATTTGGTTTCG
194 TCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCG
*
13555 CAAGAAAGTCTTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAAC
259 CAAGAAAGAC-TTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAAC
*
13620 ATGGATTCTAGAAATTACCTTCATTCATATTGTGATTAGGCACTATAAACACATTCTTC
323 ATGGATTCTAGAAATGACCTTCATTCATATTGTGATTAGGCACTATAAACACATTCTTC
* *
13679 ACAAGCATCGATTCTTATAACTGTCTCCATTCTTTTCACGAATGGGAACCAGAAACACATTCCCT
1 ACAAGCATCGATTCTTATAACTGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCT
* *
13744 TCATTAGGGTACATGACATTGATGCTTTGGTGGCACAAAAAAAGCTTTTCTTACCACCATTATTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGGCACAAAAAAAGCTTTTCTTACCACCATTTTTG
* *
13809 ATAGAATCAAAGTCTGTCTCTTAAATAAGACAAACATTAAGAGTCATACTAATCCCTATT-TTTT
131 ATAGAATCAAAGT-TTTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTT
* * * *
13873 CAAGATTAGGCACAATAAACATAGTCTTCTCATCAGGATAAACT-ATATTGATGCTTTGGTTTCG
195 CAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCG
* * * *
13937 CAAGAAACACCTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAAT-ATG----AC
259 CAAGAAAGACTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGA-GACAAAC
* * * *
13997 ATAGATTCCAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
323 ATGGATTCTAGAAATGACCTTCATTCATATTGTGATTAGGCACTATAAACACATTCTTC
14056 AC
1 AC
14058 GTTAGGATAA
Statistics
Matches: 703, Mismatches: 51, Indels: 20
0.91 0.07 0.03
Matches are distributed among these distances:
377 58 0.08
380 1 0.00
381 99 0.14
382 255 0.36
383 289 0.41
384 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (381 bp):
ACAAGCATCGATTCTTATAACTGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGGCACAAAAAAAGCTTTTCTTACCACCATTTTTG
ATAGAATCAAAGTTTTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTC
AAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCA
AGAAAGACTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATG
GATTCTAGAAATGACCTTCATTCATATTGTGATTAGGCACTATAAACACATTCTTC
Found at i:15572 original size:476 final size:475
Alignment explanation
Indices: 13679--24280 Score: 11841
Period size: 476 Copynumber: 22.3 Consensus size: 475
13669 CACATTCTTC
** * * * *
13679 ACAAGCATCGATTCTTATAACTGTCTCCATTCTTTTCACGAATGGGAACCAGAAACACATTCCCT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* *** * *
13744 TCATTAGGGTACATGACATTGATGCTTTGGTGGCACAAAAAAAGCTTTTCTTACCACCATTATTG
66 TCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * * *
13809 ATAGAATCAAAGTCTGTCTCTTAAATAAGACAAAC-ATTAAGAGTCATACTAATCCCTATT-TTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTATTCTTT
* * * * *
13872 TCAAGATTAGGCACAATAAACATAGTCTTCTCATCAGGATAAACTATATTGATGCTTTGGTTTCG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
* ** *
13937 CAAGAAACACCTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAAT-ATG----AC
259 AAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGA-GACAAAC
* * *
13997 ATAGATTCCAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACGTTA
323 ATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTA
* * * *
14062 GGATAAAGGATAATGATTATTTTCTTTAGCATTGAAATCTTTACTTTGCCTTATTTACCTTAAAA
388 GGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA
* * *
14127 TCAATGTTCATCCCATAAATATG
453 TCAAAGTTCATCCCTTAAATAAG
* * * *
14150 ACAAGAATCGATTCTCATGA-TAGT-TCCCATTCTTTTCAAGATTAGG----------A-ATTCC
1 ACAAGCATCGATTCTCGTAACTA-TCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
** * * * *
14202 CTTTTTTAAGATATATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCATC-ATTT
64 CTTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTT
* * * * * *
14266 TGGTAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATAGTAAACCTTGTTCTT
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTC-T
* * * * * * *
14331 TTTC-GGACTAGGCACCATAAACGTAGTCTTCACATAAGGATGCATGATATTGATACTTTGG-TT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * *
14394 TCATAAGAAAGGCTTTCTTCCCCCCCCCATTTTTGTCAAGTCTGACTTCTTGCCTCAAATGAGAC
257 TGA-AAGAAAGGCTTT-TT-TCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGAC
** * * * *
14459 AAACAACGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCAC
319 AAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCAC
* * * * *
14524 ATTAGGATAAAGGATAAGGATGGTTTTCTTTTGCATAGAAATCTTTTCTTTGCCTTATCTGCCTT
384 ATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTT
* * *
14589 AAAATCAAAGTTTATCTCTTAAATGAG
449 AAAATCAAAGTTCATCCCTTAAATAAG
* * * *
14616 GCAAGCATTGATTCTCGTAA-TAGTCCCCATTCTTTTCAAGATTAGGAA-CAAAAACACATTCCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * * ** ** *
14679 TTCACTAGGATAGAGGACACTAATGCTTTGGTGACGCAAAAAAAAATTTTCTTACCATTGCTTTT
65 TTCATTAGGATACATGACA-TTATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTT
** * * *
14744 GATAGAATCAAAGTTTGTAGCCTAAATAA-AGCAAACATA-AAGAGTCATACTAATCGCTATTCT
129 GATAGAATCAAAGTTTGTCTCTTAAATAAGAG-AAAC-TAGAATAGTCATACTAATCCCTATTCT
* * *
14807 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCTTAAGGATACACGATATTGATGCTTTGCTTT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * ** * * * * *
14872 CGCATGAAAGGC-TTTTTCAGACTAGTTTTTGTGAAGTCTAACTTCGTGCCTCAATTGAGACAAA
257 TGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * * *
14936 CATGGATTTTAGTAATAACCTTCATTCATTTTGTTATTAGGCACTATAAACACATTCTTCATATT
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* * * * * *
15001 AGGATAAAGGATAATTATGATTTTCTTTTGCGTAGAAATCTTTTCGTTGCCTTGTTTACCATAAA
387 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
15066 ATCAAAGTTCATCCCTTAAATAAG
452 ATCAAAGTTCATCCCTTAAATAAG
* * * * * * *
15090 ACAAGCATCGATTATCATAACTATTTCCATTATTTTTAAGATTAGGAACCAAAAACACATTCCCA
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * * *
15155 TCATTAGGATACAAGACATTATTGCTTTGATGACGAAAAAAAAGCTGTTCTTACCACCATTTTTG
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * * *
15220 ATAGAATCAAAGTTTGTCTCCTATATAAGAGAAACTAGAATAGTCATGCTAATCCATATTCTTTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTT
* *
15285 CAAGATTACGCACCGTAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
* * *
15350 AAAAAAGGGTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
260 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
* * *
15415 AGATTCCAGTAATGACCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTTCACATTAGG
325 GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
* * * **
15480 ATAAAGGATAATGATGATTTTCTTTAGCATTGAAGTCTTCACTTTGCCTTATTTACCTTAAAATC
390 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * *
15545 AATGTTCATTCCATAAATATG
455 AAAGTTCATCCCTTAAATAAG
*
15566 ACAAGCATCGATTCTCGTGA-TAGT-TCCCATTCTTTTCAAGATTGGG----------A-ATTCC
1 ACAAGCATCGATTCTCGTAACTA-TCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
* * ***
15618 CTTCTTTAGGATATATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCATTATTTT
64 CTTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTT
* * * * *
15683 TGGTAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTT
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTT
*** * * *
15748 TTTTGGACTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGG-TTT
193 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT
* * * * * * * *
15812 CATAAGAAAGGCTTTCTTCCCCCCCATTTTTGTCAAGTCTGACTTCTTGCCTTAAATGAGACAAG
258 GA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
** * * * *
15877 CAACGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCACATT
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* * * *
15942 AGGATAAAGGATAAGGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCGTTATTTACCTAAAA
387 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
* * * *
16007 ATCAAAATTTATCTCTTAAATGAG
452 ATCAAAGTTCATCCCTTAAATAAG
* * * *
16031 GCAAGCATTGATTCTCGTAA-TAGTCCCCATTCTTTTCAAGATTAGGAA-CAAAAACACATTCCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * * *** *
16094 TTCACTAAGATAGAAGACACTGT-TGCTTTGGTGACGCAAAAAAAAAATTTCTTACCACTGTTTT
65 TTCATTAGGATACATGACA-T-TATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTT
* ** * * *
16158 TGATAGAATCAAAGTTTATAGCCTAAATAAGACAAACATA-AAGAGTCATACTAATCCCTATTCT
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCTATTCT
* * *
16222 TTTCAAGATTTGGCACCATAAACATAGTTTTCTCTTAAGGATACACGATATTGATGCTTTGGTTT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * ** * * * * * *
16287 CGCATGAAAGGC-TATTTCAGACTAGTTTTTGTGAAGTCTAACTTCGTGCCTCAATTTAGACAAA
257 TGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* **
16351 CATGGATTCTCGTAATGACCTTCATTCATTTTGTTTTTAGGCACTATAAACACATTCTTCACATT
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* ** *
16416 AGGATAAAGGATAATGATGATTTTCTTTTGCGTAAAAATCTTTT-TGTTGCCTTGTTTACCTTAA
387 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCT-TTGCCTTATTTACCTTAA
*
16480 AATCAAAGTTCCTCCCTTAAATAAG
451 AATCAAAGTTCATCCCTTAAATAAG
* * * * *
16505 ACAAGCATCAATTATCGTAACTATTTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCCA
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * * * *
16570 TCAATAGG-TGCAAGACATTATTGCTTTGATGACG-AAAAAAGAGCTGTTCTTACCACCATTTTT
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAA-AGCTTTTCTTACCACCGTTTTT
* * *
16633 GATAGAATCAAAGTTTGTCTCCTATATAAGAGATACTAGAATAGTCATACTAATCCCTATTCTTT
129 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTT
*
16698 TCAAGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
* * *
16763 AAAAAAAGGCTTTCTTCCC-CCAAATTTTTATAAAGTCTGAC-TCTGTGCCTCAAATGAGACAAA
259 AAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAAGTCTGACTTC-GTGCCTCAAATGAGACAAA
*
16826 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATC
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* * *
16891 AGGATAAAAGATAGTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTTTATTTACCTTAAA
387 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
16956 ATCAAAGTTCATCCCTTAAATAAG
452 ATCAAAGTTCATCCCTTAAATAAG
* * * * * * * * *
16980 ACAAACATTGATCCTTGTAACAAT-TCCTATTTTTTTCAAGATTGAGAACCCAAAACACATTCCT
1 ACAAGCATCGATTCTCGTAACTATCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * *
17044 TTCATTAGGGTACATGACATTGATGCTTTGGTAATGCAAAAAAAGCTTTTCTTATCACCATTTTT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTT
* * * * *
17109 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAATCTAGAATAGTTATACTAAACCTTGTTCTTT
129 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTT
* * * * *
17174 TCAGGATTAGGCATCATAAACGTAGTTTTCTCATAAGGATACACGATATTGATGCTTTTGTTTTG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
* * * * * * *
17239 AAAGAAAGGC-TTTCTCCTCCCCAATTTTTGTAAAGTTTGACTTCATGCCTTAAGTAAGACAAAC
259 AAAGAAAGGCTTTTTTCC-CACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAAC
* * * * * * * *
17303 A-GTGATTCTAATAATGATCTTCATTCATTTTGAGATTAGACACTATAAACACCTTCTCCTCACT
323 ATG-GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* * ** * * *
17367 AGGATAAATGTTTTTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTCACCTTA
387 AGGATAAAGGATAATGATGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTA
* * *
17432 AAATCAAAATTTATCCCATAAATAAG
450 AAATCAAAGTTCATCCCTTAAATAAG
* * ** * * * *
17458 GCGAGCATCGAGGCTCGTAAC-AGTCTCCATTATTTTCAAGGTTAGGAACCAAAAACACATTTCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * *
17522 TTCATTAGGATACATGACATTGATGCTATGGTGATGTAGAAAAAGCTTTTCTTACCACCGTTATT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTT-TT
* * * *
17587 T-ATTGAATCAAAGTCTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTA-T-T
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTATTCT
* *
17648 TTTCAAGATTAGGCACCATAAACATAGACTTCTCATAAGGATACACTATATTGATGCTTTGGTTT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * *
17713 CGCAAGAAATGCTTTTTTCCCACCAATTTTTGTTAAGTCTGACTTCGTACCTTAAATGAGACAAA
257 TGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * *
17778 CATGGATTCTACTAATGACCTTCATTCATCTTGTGATTTGGCACTATAAACACATTCTTCACATT
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* *
17843 AGGATAAAGGATAATGATGATTTT-TTGTTGCATGGAAATCTTTTCGTTGCGTTATTTACCTTAA
387 AGGATAAAGGATAATGATGATTTTCTT-TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
17907 AATCAAAGTTCATCCCTTAAATAAG
451 AATCAAAGTTCATCCCTTAAATAAG
*
17932 ACAAGCATCGATTCTCGTAA-TATTCTCCATTCTTTTCAAGATTGGAAACCAAAAACACATTCCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* ** * **
17996 TTCATTAGGACACATGACATTGATGCTTTGGTGGCGCAAAAAATGCTTTTCTTAGAACCGTTTTT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCG-TTTT
* * *
18061 TTATAGAATCAAAGTTTGTCTCTTAAATAA-AAAAAC-ATGAAGAGTCATACTAATCCCTATTCT
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTATTCT
* * * **
18124 TTTCAAGATTTGGAACCATAAACATAGTCTTCTCATACGGATACAAAATATTGATGCTTTGGTTT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * * *
18189 TGGAAGAAAAGCTTTTTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTAAGTCAAA
257 TGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * * * * *
18254 TATGGATTCTAGTATTGGA-CTTCATTCATTTTGTTATTAGGCACTATCAGCGCATTCTTCACAT
322 CATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
* * ** * ** *
18318 TAGGATCAAGGATAATGATGATTTTCTTTTGTATGCCAATCTTTTCTTCGCCTTATTTGTCATAA
386 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
18383 AATCAAAGTTCATCTCC-TAAATAAG
451 AATCAAAGTTCATC-CCTTAAATAAG
** * * * *
18408 ACAATTATCAATTATCATAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * * * * * *
18473 TCAATAGGAAACATGACATTATTGC-TTGATGACGTAAGAAAATCTTTTCTTACCATCGTTTTTT
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * ** * *
18537 ATAGAATCAAGGTTTGTCTTTTAAATAAGAGAAACTAGAATAGTTGTACTAATCCCTGTCCTTTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTT
* * * **
18602 CAAGATTCGCCACCATAAACATAGTCTTCTCATACA-GATAAAAAATATTGATGCTTTGGTTTTG
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATA-AGGATACACGATATTGATGCTTTGGTTTTG
* ** * *
18666 CAAGAAAATCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACA
259 AAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA
* * *
18731 TGGATTCTAGTATTGGA-CTTCATTCATTTTGTTAATAGGCACTATAAACACATTCTTCACA--A
324 TGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTA
* **
18793 GGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTTCTTATTTACCTTAAAA
388 GGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA
* * *
18858 TCAAAGTTTATCTCGTCAAA-AAG
453 TCAAAGTTCATC-CCTTAAATAAG
* * * * ** *
18881 ACAAGTATCGATTATCGTAATTGTCTCTGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCCC
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * *
18946 TCATTAGGATACGTGACATTATTGCTTTGATGATGCAAAAAAAGCTGTTCTTACCTCCGTTTTTG
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* *
19011 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATTGTCATACTAATCTCTATTCTTTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTT
* * * * *
19076 CAGGATTAGGCAGCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTTGTTTAGA
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
** * * * * *
19141 AAGAAAGGCTTTCTCCCCCCCCCCAATTTTTGTAAAGTTTGACTTCATGCCTCAAGTAAGACAAA
260 AAGAAAGGCTTT-T--TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * * * * * * * *
19206 CA-GTGATTTTAATAATGATCTTCATTCATTTTGAGATTAGACGCTATAAACACCTTCTCCACAC
322 CATG-GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
* * ** * * * *
19270 TAGGATAAATGTTTTTGATGATTTTTTTTTTTTGCATGGAAATCCTGTCTTTGCCCTATTTACCT
386 TAGGATAAAGGATAATGATGA---TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCT
*
19335 TAAAATCAAAATTCAT-CCTATAAATAAG
448 TAAAATCAAAGTTCATCCCT-TAAATAAG
* * ** * * *
19363 GCGAGCATCGAGGCTCGTAAC-AGTCTCCATTCTTTTCAAGGTTAGGAACCAAAAACACATTTCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * *
19427 TTCATTAGGATACATGACATTGATGCTATGGTGATGCAGAAAAAGCTTTTCTTACCATCGTTATT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTT-TT
* * *
19492 T-ATAGAATCAAAGTCTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTA-T-T
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTATTCT
* * *
19553 TTTCAAGATTAGGCACCATAAACATAGACTTCTCATAAGGATACACTATATTGATGCTTCGG-TT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * *
19617 TCACAAGAAACGTTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTACCTTAAATGAGACAA
257 TGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAA
* * *
19682 ACATGGATTCTACTAATGACCTTCATTCATCTTGTGATTTGGCACTATAAACACATTCTTCACAT
321 ACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
*
19747 TAGGATAAAGGATAATGATGATTTT-TTTTGCATGGAAAACTTTTCTTTGCCTTATTTACCTTAA
386 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
19811 AATCAAAGTTCATCCCTTAAATAAG
451 AATCAAAGTTCATCCCTTAAATAAG
* * *
19836 ACAAGCATCAATTCTCGTAA-TAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAAGACATTCCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * * *
19900 TTCATTAGGATACATGACATTCATACTCTGTTGGTGCAAAAAATGCTTTTCTTAGCACCGTTTTT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCG-TTTT
* * *
19965 TTATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATA-AAGAGTCATACTAATCCCTATTCT
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCTATTCT
* * * **
20029 TTTCAAGATTTGGAACCATAAACATAGTCTTCTCATACGGATACAAAATATTGATGCTTTGGTTT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * * *
20094 TGGAAGAAAAGCTTTTTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTAAGTCAAA
257 TGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * * * **
20159 CATGGATTCTAGTATTGGA-CTTCATTCATTTTGTTATTAGGCACTATCAGCGTATTCTTCACAT
322 CATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
* ** ** ** *
20223 TAGGATCAAGGATAATGATGATTTTCTTTTGCATGCCAATCTTTTCTTCACCTTATTTGTCATAA
386 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
20288 AATCAAAGTTCATCTCC-TAAATAAG
451 AATCAAAGTTCATC-CCTTAAATAAG
** * * * *
20313 ACAATTATCAATTATCATAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * * * * *
20378 TCAATAGGAAACATGACATTATTGC-TTGATGACGTAAGAAAA-TTTTTCTTACCATCGTTTTTG
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * ** * *
20441 ATAGAATCAAGGTTTGTCTTTTAAATAAGAGAAACTAGAATAGTTGTACTAATCCCTGTCCTTTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTT
* * **
20506 CAAGATTCGCCACCATAAACATAGTCTTCTCATACA-GATACAAAATATTGATGCTTTGGTTTTG
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATA-AGGATACACGATATTGATGCTTTGGTTTTG
* ** * *
20570 CAAGAAAATCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACA
259 AAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA
* * * * *
20635 TGGATTCTAGTATTGGA-CTTCATTCATTCTGTTAATAGGCACTATAAACACATTTTTCACA--A
324 TGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTA
* **
20697 GGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTTCTTATTTACCTTAAAA
388 GGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA
* * *
20762 TCAAAGTTTATCTCGTCAAA-AAG
453 TCAAAGTTCATC-CCTTAAATAAG
* * * * *
20785 ACAAGTATCGATTATCGTAATTGTC-CCTGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
1 ACAAGCATCGATTCTCGTAACTATCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * **
20849 CTCATTAGGATACGTGACATTATTGCTTTGATGATGCAAAAAAAGCTGTTCTTACTTCCGTTTTT
65 TTCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTT
* *
20914 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATTGTCATACTAATCTCTATTCTTT
129 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTT
* * * * *
20979 TCAGGATTAGGCAGCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTTGTTTAG
194 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
* * * * * * *
21044 AAAGAAAGGCTTTCTCTCCCCCCCCCAATTTTTGTAAAGTTTGACTTCATGCCTCAAGTAAGAGA
259 AAAGAAAGGCTTT-T-T--TCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACA
* * * * * * * * * *
21109 AACA-GTGATTTTAATAATGATCTTTATTCATTTTGAGATTAGACGCTATAAACACCTTCTCCTC
320 AACATG-GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCAC
* * * ** * * *
21173 ACTAGGATAAATGTTTTTGATGATTTTTTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTAC
384 ATTAGGATAAAGGATAATGATGA---TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTAC
* *
21238 CTTAAAATCAAAATTCATCCCATAAATAAG
446 CTTAAAATCAAAGTTCATCCCTTAAATAAG
* * ** * * *
21268 GCGAGCATCGAGGCTCGTAAC-AGTCTCCATTCTTTTCAAGGTTAGGAACCAAAAACACATTTCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* ** * *
21332 TTCATTAGGATACATGACATTGATGCTATGGTGATATAGAAAAATCTTTTCTTACCACCGTTATT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTT-TT
* * * *
21397 T-ATAGAATCAAAGTCTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCT-GT-T
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTATTCT
* *
21458 TTTCAAGATTAGGCACCATAAACATAGACTTCTCATAAGGATACACTATATTGATGCTTTGG-TT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * *
21522 TCACAAGAAACGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTACCTTAAATGAGACAA
257 TGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAA
* * *
21587 ACATGGATTCTACTAATGACCTTCATTCATCTTGTGATTTGGCACTATAAACACATTCTTCACAT
321 ACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
*
21652 TAGGATAAAGGATAATGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
386 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
* *
21717 AATCAAAGCTCATCCCTTCAATAAG
451 AATCAAAGTTCATCCCTTAAATAAG
* * *
21742 ACAAGCTTCGATTCTCGTAA-TAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAAGACATTCCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * *
21806 TTCATTAGGATACATGACATTCATGCTCTGGTGGTGCAAAAAATGCTTTTCTGAGCACCGTTTTT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCG-TTTT
* * *
21871 TTATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATA-AAGAGTCATACTAATCCCTATTCT
128 TGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCTATTCT
* * **
21935 TTTCAAGA-T-----CCATAAACATAGTCATCTCATACGGATACAAAATATTGATGCTTTGGTTT
192 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * *
21994 TGGAAGAAAAGCTTTTTTCCCACTAATTTTTGTAAAGTCT-AGCTTCGTGCCTCAATTAAGTCAA
257 TGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGA-CTTCGTGCCTCAAATGAGACAA
* * * * *
22058 ACATGGATTCTAGTATTGGA-CTTCATTCATTTTGTTATTAGGCACTATCAGCGCATTCTTCACA
321 ACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
* * ** * **
22122 TTAGGATAAAGGATAATGACGATTTTCTTTTGTATGCCAATCTTTTCTTCAG-CTTATTTGTCTT
385 TTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTT-TGCCTTATTTACCTT
*
22186 AAAATCAAAGTTCATCTCTTAAATAAG
449 AAAATCAAAGTTCATCCCTTAAATAAG
** * * *
22213 ACAATTATCAATTATCGTAACTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * *** * * * * *
22278 TCAATAGGAAACATGACATTATTGCTTTGACAATGTAAGAAAATCTTTTCTTACCATCGTTTTTT
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * ** * * *
22343 ATAGAATCAAGGTTTGTCTTTTAAATAAGAGAAACTAGAATAGTTGTACTTATCCCTGTCCTTTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTT
* * ** * *
22408 CAAGATTCGCCACCATAAACATAGTCTTCTCATATA-GATACAAAATATCGATGCTTTGGTTTCG
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATA-AGGATACACGATATTGATGCTTTGGTTTTG
* ** * * * * *
22472 CAAGAAAATCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTTCCTCAATTGAGATAAGCA
259 AAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA
* * * *
22537 TGGATTCTAGTATTGGA-CTTCATTCATTTTGTAAATAGGCACTATAAACACATTCTTCACGTTA
324 TGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTA
* **
22601 GGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTTCTTATTTACCTTAAAA
388 GGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA
* ** *
22666 TCAAAGTTTATCCCGGAAAAAAG
453 TCAAAGTTCATCCCTTAAATAAG
* * * * ** *
22689 ACAAGTATCGATTATCATAACTGTCTCTGTTCTTTTCAAGATTGGGAACGAAAAACACATTCCCT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * *
22754 TCATTAGGATACATGACATTATTGATTTGATGATGCAAAAAAAGCTGTTCTTACCACCCTTTTTG
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* **
22819 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATTGTCATACTAATCTTTATTCTTTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTT
* * * *
22884 CAGGATTACGCACCATAAACATAGTCTTCTCAGAAGGATACACAATATTGATGCTTTGGTTTTGA
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
* * * *
22949 AAAAAAGGCTTTTTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAATAT
260 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
* * * * *
23014 GGATTCTAGTAATTACCTTCATTCATTTTGTGATTAGGCATTGTAAACAGATTCTTCACGTTAGG
325 GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
** *
23079 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTCACCTT-TTTCACCTGAAAAT
390 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTT-ACCTTAAAAT
23143 CAAAGTTCATCCCTTAAATAAG
454 CAAAGTTCATCCCTTAAATAAG
** * * * **
23165 ACAATTATCGATTATCGTAATTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCTTT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * * *
23230 TCCTTAGAATACATGACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTT
66 TCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTG
* * * * * * *
23295 AAAGAATCAAAGTTTGTCTCTAAAATTAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTT
130 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTT
* * * * * * * * *
23360 TAGGACTAGGCATCATAAACGTAATCTTCTTATAAGGATGCACGATATTGATGCTTTGGTTGTGA
195 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
* * * * * *
23425 AAGAAAGACTTTTTCCCCTCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGATAAACAT
260 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
* * * *
23490 GGATTCTAGTATTGGA-CTTCATTCAATTTGTGATTAGGCACAATAAACACTTTCTTCACATTAG
325 GGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAG
* ***
23554 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATATTTTCTTTATGTTATTTACCTTAAAAT
389 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
* *
23619 CAAAATTCATCCCTTAAATGAG
454 CAAAGTTCATCCCTTAAATAAG
* * * * * *
23641 GCAAGCATTGATTCTCTTAAC-AGTCTTCATTCTTTTCAAGATTAGGAACCAAAAACACATTTCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * *
23705 TTCATTCGGATACAAGACATTAATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCATCGTTTTT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTT
* * * *
23770 GATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATA-AATAGTAATACTAATCCCTATCCTT
129 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCTATTCTT
* * * * * * * *
23834 TTCAGGATTTGGCACCATAATCATAGCCTTCTTATAAAGATACATGATGTTGATGCTTTGGTTTT
193 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT
* * * * * *
23899 GAAAGAAAGCCTTTCTTCCC-CGTAATATTTGTAAAGTTTGACTTCGTGCCTCAAATGAGACAGA
258 GAAAGAAAGGCTTTTTTCCCAC-CAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * * * * *
23963 CATGGATTCTAGTAGTGACCTTTATTCATTTTGGGATTAGGCACTATAAACACCTTCTCCTCATT
322 CATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* * * * ** * *
24028 GGGATAAATGTTATTGATGATTTTCTTTTGCAT-GAAAAGTTTTCTTTACCCTATTTACCTTAAA
387 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
*
24092 ATTAAAGTTCATCCCTTAAATAAG
452 ATCAAAGTTCATCCCTTAAATAAG
* * * * * *
24116 GCAATCATCGAGTCTCGTAA-TAGTCTCCATTCTTTTCACGATTGGGAACCCAAAACACATTTCC
1 ACAAGCATCGATTCTCGTAACTA-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * ** *
24180 TTCATTATGATACATGACATTGATGCTATAGTGACACAAAAAAAGCTTTTCTTACCATCGTTTTT
65 TTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTT
*
24245 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
129 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC
24281 GTGAGGAGTC
Statistics
Matches: 8549, Mismatches: 1391, Indels: 378
0.83 0.13 0.04
Matches are distributed among these distances:
459 54 0.01
460 112 0.01
461 8 0.00
462 36 0.00
463 1 0.00
464 4 0.00
465 391 0.05
466 174 0.02
469 2 0.00
470 68 0.01
471 361 0.04
472 159 0.02
473 347 0.04
474 1556 0.18
475 1142 0.13
476 2634 0.31
477 591 0.07
478 301 0.04
479 27 0.00
480 88 0.01
481 73 0.01
482 210 0.02
483 204 0.02
484 6 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
TCATTAGGATACATGACATTATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGA
TAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTC
AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAA
AGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATG
GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGA
TAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCA
AAGTTCATCCCTTAAATAAG
Found at i:29251 original size:42 final size:42
Alignment explanation
Indices: 29183--29314 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
29173 TCCCTCTTCC
* * * *
29183 ATCT-TCTTCTCTCCTCCTCCTGTCATCCCTCTTCTCTCTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCTCCTCTCTCTACT
*
29225 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
* *
29267 ATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTCT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
*
29309 TTCTCT
1 ATCTCT
29315 TTGAGGGCTA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 73 0.91
43 7 0.09
ACGTcount: A:0.08, C:0.44, G:0.02, T:0.45
Consensus pattern (42 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
Found at i:31841 original size:475 final size:475
Alignment explanation
Indices: 30929--34470 Score: 4221
Period size: 475 Copynumber: 7.4 Consensus size: 475
30919 GTTTTCATCA
* * *
30929 CATACTAATCCCAATTTTTTTCAAGATTAGGCACCATAAACATAGTCCTCTCATAAGGATACAAT
1 CATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC-AT
* * * *
30994 ATATTAATGCTTTGGTTTCATAAGAAAGGCTTTTTTCCCACCAATTTATGTAAAGTCTGACTTCG
65 ATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCG
* * * * * *
31059 TACCTCAAATGAGGCAAACATGGATTCTAGTCATGACATTCATTTATTTTGTTATTAGGCACTAT
130 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
31124 AAATACATTCTTCACATTTGGATAAAAGATAATGATGATTTTCTTTTGCATGGAAATCTTCTCTT
195 AAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * * ****
31189 TGCC-TATTTACCTTAAAATTAAAGTTCATCCCTTAAATAAGATTAGGAACCAAAAAC---ACAT
260 TGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA-
* * ** * * ** * * *
31250 TTCCTTCATTCGGATACAAGATTAGGAACCAAAAACACATTCCCTTTTTTAAGATATAAGACATT
324 GT-CTCCATTC-TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * * *
31315 GAGGCTTTGGTGACG-AAGAAAAAGCGTTTCTTACTACTGTTTTTGATAGAATCAAAGTTTATCT
387 GATGCTTTGGTGACGCAA-AAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCT
* *
31379 CATAAATAAGACAAACATGAAAAGT
451 CTTAAATAAGACAAACATGAAGAGT
* * *
31404 CACACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATAAGGATACATG
1 CATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAT-
* *** * * *
31469 ATATTGATGCTTTAGTTTCACAA-AAGAAGCTTTTTTCTTGCAAATTTTTGTAAAATCTAACTTC
65 ATATTGATGCTTTGGTTTCACAAGAA-AAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTC
* * * * * * *
31533 GTGCCACAACTAAGACAAACTTGGATTCAAGTATTGGA-CTTCATTTATTTTG-GCATTAGGCAC
129 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTG-ATTAGGCAC
* * *
31596 TATAAACATATTCTTCACATTAGGATAAGGGATAATGATGATTTTCTTTTGCATGGAAATATTTT
192 TATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTT
*
31661 CTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGATTCTCGTAA
257 CTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* ** *
31726 CAATCTCCACGCTTTTCAAGATTGGGAACCAAAAACACCA-TCCCTTCATTAGGATATATGACAT
322 CAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA-CATTCCCTTCATTAGGATACATGACAT
* * * *
31790 TGATGCTTTGGTGATGCAAAAAAAG-TTTTTTTACCACCGTTTTTTATAGAATCAAAGTTTGTCT
386 TGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCT
*
31854 CCTAAATAAGACAAACATGAAGAGT
451 CTTAAATAAGACAAACATGAAGAGT
* * * * * *
31879 CATACTAATCCCTTTTCTTTCCAAGATTTGGCACCATAAACATAGTCTTCTCGTATGGATACAAA
1 CATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC-AT
** * * *
31944 ATATTGATGCAATGGTTTCGCAATAAAAGCTTTTTT-CCACCAATTTTTGTAAAGTCTAACTTCG
65 ATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCG
* * * ** * *
32008 TGCCTCAATTGAGACAAACATGGATTCTAGTATTGGA-CTTTATTCGCTTTGTTATTAGGCACGA
130 TGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTA
*
32072 TAAACACATTCTTCACAGTAGGATAAAGGATAATGATGATTTTCTTTTGCAT-GAAATCTTTTCT
194 TAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
32136 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTATCGTAACT
259 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * *
32201 GTCTCCATTCTTTACAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAGGATATT-A
324 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
32265 TTGCTTTGATGACGCAAAAAAAGATGTTTTTTTCGC-C-GTTTTTGATAGAATCAAAGTTTATCT
389 -TGCTTTGGTGACGCAAAAAAAGCT-TTTCTTAC-CACTGTTTTTGATAGAATCAAAGTTTGTCT
* *
32328 CTTAAATAAGAGAATC-TAGAAGAGT
451 CTTAAATAAGACAAACAT-GAAGAGT
* * * * * *
32353 CATACTAATCCTTGTTCTTCTCTAGATTAGGCACCATAGACATAGTCTTCTCATAAGGATACACG
1 CATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-T
* * * *
32418 ATATTGATGTTTTGGATTTGA-AA-AAAAGGTTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
65 ATATTGATGCTTTGG-TTTCACAAGAAAAGCTTTT-TTCCCACCAATTTTTGTAAAGTCTGACTT
* * *
32481 CGTGCCTCAAATGAAACAAACATGGATTCCAGTAATGACCTTCATTCCTTTTGTGATTAGGCACT
128 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
* * *
32546 GTAAACACATTTTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATATTTTC
193 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTC
* * * * * *
32611 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAGGGCAAGCATCAAGTCTAGTAAT
258 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * **
32676 AGTCTCCATTATTTT-AATGATTAGGAACCAAAAACACATTCTTTTCATTAGGATACATGACATT
323 AGTCTCCATTCTTTTCAA-GATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* ** * *
32740 GATGCTTTGGTAACGCAAAAAAAAAAAGCTTTTCCCACCACTGTTTTTGATAAAATTAAAGTTTG
387 GATGCTTTGGTGACGC----AAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTG
* * * *
32805 TCTCTTAAATAAGAGAAGC-TAAAATAGT
448 TCTCTTAAATAAGACAAACAT-GAAGAGT
* * * * * * *
32833 CATACTAAACCTTGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATAAGGATGCACG
1 CATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-T
* * * * *
32898 ATATTGATGCCTTGGTTTTTA-AA-AAAAGGCTTTCTTCCCCCCAATTTCTGTAAAGTCTGACTT
65 ATATTGATGCTTTGG-TTTCACAAGAAAA-GCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTT
* * * * * * * *
32961 CGTGCCTCGAATAAGACAAATATTGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGACACA
128 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
* * * * * * * *
33026 ATAAACACCTTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTGTTGCATGGAAATCTTTTG
193 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTC
* * **
33091 TTTGCCTTATTTACCTTAAAAAT-AAAGTTCATCCTTTAAATAAGGCAAGCATCGAGGCAT-GTA
258 TTTGCCTTATTTACCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC-TCGTA
* * * *
33154 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGGTACATGACAC
321 ACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * * * *
33219 TGATGCTATGGTGATGCAGAGAAAGCTTTTTCTTTCCACCGTTTTTGATAGAATCAACGGTTGTC
386 TGATGCTTTGGTGACGCAAAAAAAGC-TTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTC
33284 TCTTAAATAAGACAAA-AGTGAAGAGT
450 TCTTAAATAAGACAAACA-TGAAGAGT
* *
33310 CATACTAATCCCTATTTTTTTCAAGATTAGGCACAATAAACATAGTCTTCTCATAAGGATACACT
1 CATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-T
* ** * *
33375 ATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTTACTTCG
65 ATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCG
* *
33440 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGGATTAT
130 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
33505 AAACACATTGTTCACATAACGATAAAGGATAATGATGATTTTCTTTTCCATGGAAATCTTTTCTT
195 AAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * *
33570 TGCCTTATTTACCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATCCTTGTAACAA
260 TGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * *
33635 TTTCCATT-TTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTAAT
325 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
33699 GCTATGGTGACGCAAAAAAAGCTTTTCCTACCGCTGTTTTTGATAGAATCAAAATTTATTTCTTA
390 GCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
*
33764 AATAAGACAAACGTGAAGAGT
455 AATAAGACAAACATGAAGAGT
* *
33785 CATACTAATCCC-AATCTTTTTCAAGATTAGGCACCAAAAACATAGTCTTCTCATAAGGATACAC
1 CATACTAATCCCTATTC-TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-
* * * * *
33849 TATATTGATGCTTTGGTTTCATAAGAAAGGCTTTTTTCGCACAAATTTTTGCAAAGTCTGACTTC
64 TATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTC
* *
33914 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTTATTTTGTGATTAGGCACTA
129 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTA
*
33979 TAAACACATTCTTCACATTAGGATAAAGGATGATGATGATTTT-TTTTGCATGGAAATCTTTTCT
194 TAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCT
** * *
34043 TTGCCAAATTTACTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCCCGTAACA
259 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * *
34108 GTCTCCATTCTTTTCAAGATTGAGAACCAATATCACATTTCCTTGATTAGGATACATGACATTAA
324 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * *
34173 AGCTATGGTGATGCAGAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAATGTTTGTCTTTT
389 TGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
*
34238 AAATAAGACAAACGTGAAGAGT
454 AAATAAGACAAACATGAAGAGT
* * * *
34260 CATACTTATCCCTATGT-TTTTCAAGATTAGGCGCCATAAACATAGTCTTCTCATAATGATATAC
1 CATACTAATCCCTAT-TCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-
* ** * * *
34324 TATATTGATGCTTTGGCTTCGTAGGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGATTTC
64 TATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTC
* * * * * *
34389 GTGCCTCAATTTAGTCAAACATGTATTATAATAATGACCTTCACTT-ATTTTGTGATTAGGCACT
129 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCA-TTCATTTTGTGATTAGGCACT
34453 ATAAACACATTCTTCACA
193 ATAAACACATTCTTCACA
34471 AGCATTGATT
Statistics
Matches: 2648, Mismatches: 369, Indels: 100
0.85 0.12 0.03
Matches are distributed among these distances:
472 3 0.00
473 155 0.06
474 331 0.12
475 1078 0.41
476 335 0.13
477 329 0.12
478 6 0.00
479 8 0.00
480 391 0.15
481 12 0.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (475 bp):
CATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATA
TATTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGT
GCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATA
AACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
GCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAAGAGT
Found at i:34792 original size:382 final size:382
Alignment explanation
Indices: 34157--34852 Score: 974
Period size: 382 Copynumber: 1.8 Consensus size: 382
34147 TCCTTGATTA
* * **
34157 GGATACATGACATTAAAGCTATGGTGATGCAGAAAAAGCTTTTCTTACCACTGTTTTTGATAGAA
1 GGATACATGACATTAAAGCTATAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAA
* * *
34222 TCAATGTTTGTCTTTTAAATAAGACAAACGTGAAGAGTCATACTTATCCCTATGTTTTTCAAGAT
66 TCAAAGTTTGTCTCTTAAATAAGACAAACGTGAAGAGTCATACTAATCCCTATGTTTTTCAAGAT
* * * * * *
34287 TAGGCGCCATAAACATAGTCTTCTCATAATGATATACTATATTGATGCTTTGGCTTCGTAGGAAA
131 TAGGCACCATAAACATAGTCTTCCCATAAGGATACACTATATTGAGGCTTTGGCTTCGAAGGAAA
* * * * *
34352 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTGATTTCGTGCCTCAATTTAGTCAAACA-TGTATT
196 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTGATTTCATGCCTCAAATAAGACAAACATTG-ATT
*
34416 ATAATAATGACCTTCACTTATTTTGTGATTAGGCACTATAAACACATTCTTCACAAGCATTGATT
260 ATAATAACGACCTTCACTTATTTTGTGATTAGGCACTATAAACACATTCTTCACAAGCATTGATT
34481 CTCATAACTGCCTATATTCTTTTCAAGAAGGGGAGCCAAAAACACATTCTCTTCATTC
325 CTCATAACTGCCTATATTCTTTTCAAGAAGGGGAGCCAAAAACACATTCTCTTCATTC
* * * *
34539 GGATACATGACATTGATGCTTTAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTTATAGAA
1 GGATACATGACATTAAAGCTATAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAA
* *
34604 TCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCTAT-TCTTTTCAAG
66 TCAAAGTTTGTCTCTTAAATAAGACAAACGT-GAAGAGTCATACTAATCCCTATGT-TTTTCAAG
* * *
34667 ATTTA-GCACCATAAACATAGTCTTCCCATAAGGATACA-TGAT-TTGGAGGTTTTGGTTTTGAA
129 A-TTAGGCACCATAAACATAGTCTTCCCATAAGGATACACT-ATATT-GAGGCTTTGGCTTCGAA
* *
34729 GGAAATGCTTTCTTCTCC-CCAATTTTTGTAAAGTCTGATTTCATGTCTCAAATAAGACAAACAT
191 GGAAAGGCTTTCTTC-CCACCAATTTTTGTAAAGTCTGATTTCATGCCTCAAATAAGACAAACAT
* * * *
34793 TGATTCTAATAACGACTTTCATTTATTTTGTGATTAGGCACTATAAACACATTTTTCACA
255 TGATTATAATAACGACCTTCACTTATTTTGTGATTAGGCACTATAAACACATTCTTCACA
34853 TTAGGATAAA
Statistics
Matches: 273, Mismatches: 34, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
381 5 0.02
382 261 0.96
383 7 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (382 bp):
GGATACATGACATTAAAGCTATAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAA
TCAAAGTTTGTCTCTTAAATAAGACAAACGTGAAGAGTCATACTAATCCCTATGTTTTTCAAGAT
TAGGCACCATAAACATAGTCTTCCCATAAGGATACACTATATTGAGGCTTTGGCTTCGAAGGAAA
GGCTTTCTTCCCACCAATTTTTGTAAAGTCTGATTTCATGCCTCAAATAAGACAAACATTGATTA
TAATAACGACCTTCACTTATTTTGTGATTAGGCACTATAAACACATTCTTCACAAGCATTGATTC
TCATAACTGCCTATATTCTTTTCAAGAAGGGGAGCCAAAAACACATTCTCTTCATTC
Found at i:40216 original size:42 final size:42
Alignment explanation
Indices: 40161--40279 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
40151 TTCTTCTCTC
* *
40161 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
40203 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCTTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
40245 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
40280 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:40221 original size:24 final size:24
Alignment explanation
Indices: 40185--40270 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
40175 CCTCCTCTCT
* *
40185 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
40209 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
*
40230 CTATC-T--CTCTTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
40251 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
40271 TCTTTCTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 3 0.06
20 5 0.11
21 14 0.30
22 5 0.11
24 20 0.43
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:43798 original size:476 final size:472
Alignment explanation
Indices: 42050--52466 Score: 11768
Period size: 476 Copynumber: 21.7 Consensus size: 472
42040 AACTGCCTAT
* ** * * * *
42050 ATTCTTTCCAAGAAGGGGAGCCAAAAACACATT-CTCTTCATTCGAATACATGACATTGATGTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT-TTCATTAGGATACATGACATTGATGCTT
* * * * *
42114 TAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTAATAGAATCAAAGTTTGTCTCTTAAAGA
65 TGGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
42179 AGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTTA-GCACCGTAAACATAGTC
129 AGACAAACTAGAAGAGTCATACTAATCCCT-TT-TTTTCAAGA-TTAGGCACCATAAACATAGTC
* * * *
42243 TTCTCATAGGGATACATGAT-TTGGATGCTTTGGTTTTGAAGGAAATGCTTTCTTCCCCCCAATT
191 TTCTCATAAGGATACACGATATT-GATGCTTTGGTTTTGAAAGAAAGGCTTTCTT-CCCCCAATT
* * * * ** * * *
42307 TTTGTAAAGTCTGATTTCATGTCTCAAATAAGACAAACATGGATTCTAACAACGACTTTCATTTA
254 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
* **
42372 TTTTGTGATTAGGCACTATAAACACATTTTTCACATTAGGATAAAAAATAATGATGATTTTCTTT
319 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
42437 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
384 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *
42502 GGATCGATCCTCGTAATAGTTCCT
449 GCATCGATTCTCGTAACAGTTCCC
* * * * *
42526 ATTCTTTTCAAAATTGCGAACTAAAAACACATTCATTTCATTAGGATAGATGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * * * * * *
42591 AGTAACGCAAAACAAGCTTTTCTCACCACCGTTTTTAAAAGAATCAAAGGTTGTCTATCAAATAA
66 GGTGACGCAAAA-AAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * *
42656 GAGAAACTAGAATG-GTCAAACTAATTCCTTTTTCTTTCAAGATTAGGCACTATAAACGTAGTTT
130 GACAAACTAGAA-GAGTCATACTAA-TCCCTTTT-TTTCAAGATTAGGCACCATAAACATAGTCT
*
42720 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTT
192 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT-CCCCCAATTTT
* * * *
42785 TGTAAAGTCGGACTTCGTGCCTCAAATGAGACAAACCTGGATCCTAGTAATGACCTTTATTCATT
256 TGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATT
* *
42850 TTGTGATTAGGCACTATAAACACATTCTTCGCATTAGGAGAAAGGATAATGATGATTTTCTTTTG
321 TTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
* *
42915 CATGTAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAG
386 CATG-GAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* *
42980 CAGCGATTCTCTTAACAGTTCCC
450 CATCGATTCTCGTAACAGTTCCC
* * *
43003 ATTCTTTTCTAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * *
43068 GGTGACGCAAAAAATGC-TTTCATTACTACCGTTTTTGATAGAATCAACGTTTGCCTCTTAAATA
66 GGTGACGCAAAAAA-GCTTTTC-TTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
43132 AAACAAACGT-GAAGAGTCAAACTAATCCCTATTTTTTTCAAGATCAGCCACCATTAACATAGTT
129 AGACAAAC-TAGAAGAGTCATACTAATCCC--TTTTTTTCAAGATTAGGCACCATAAACATAGTC
* * ** * *
43196 TTCTCATAAAGATACACTATATTGACACTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTT
191 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAATTT
* ** *
43261 TTGTAAAGTCTGACTCCGTGCCTCAAATGAGACAAATGTTGATTCTAGTAATGACCTTCATTCAT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
* * * *
43326 TTTGTGCTTAGGCACTATAAAGACATTCTTCACATTAAGATAAAGGATAATGATGATTTTCGTTT
320 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * * * *
43391 GCATGGAAATGTTTTCTTTGCCTTATTTGCCTTAAAA-AAAAGTTCATCACTTAAATAAGATAAG
385 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
43455 CATCGATTCTCGTAACAGTTCCC
450 CATCGATTCTCGTAACAGTTCCC
* * * *
43478 ATTATTTTCAAGCTTGGGAACTAAAAACACATTCCTTTCATTAGGATACATGACATTGTTGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * ** * * *
43543 GGTAACGCAAAAGAGCTTTTCTCACCACTATTTTTTATAAAAACAAAGTTTGTCTCTTAAATAAG
66 GGTGACGCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * * * * *
43608 AGAAGCTAGAATAGTCGTACTAAACCCCTTGTTCTGTTCAGGATAAGGCTCCATAAACGTAGTCT
131 ACAAACTAGAAGAGTCATACT-AATCCCTT-TT-T-TTCAAGATTAGGCACCATAAACATAGTCT
* * ** *
43673 TCTCGTAAGGATGCACGACGTTGATTCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTT
192 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCC-CAATTTT
* * * ** *
43738 TGTAAAGTCTGACTTCGTGCCTCAATTGAGATAAACATTGAGACTAGTAATGATCTTCATTCATT
256 TGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATT
* * * * * *
43803 TTGTGATTAGGCATTATAAACACATTGTCCACAATAGGATAAAGGATAAGGATGATTTTTTTTTG
321 TTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
* *
43868 CATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGGCAAGC
386 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT-AAG--A-C
* *
43933 AATAGTGTCCATTCTTTTCTCTACCTTATGCTCGTAATAGTGT-CC
447 -A-A--G--CA--------TCGA---T-T-CTCGTAACAGT-TCCC
* * *
43978 ATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTT-ATCAGGATACAAGACATTGATGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGATGCTT
* * ** *
44042 TGGTGATGCAAAAAAAACTTTTCTTACCATTGTTTTTGATAGAATCAAAG-TTGTCTCTGAAATA
65 TGGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
44106 CGACAAAC-ATGAAGAGTCATACTAATCCCCACTCTTTTCAAGATTTGGCACCATAAACATAGTC
129 AGACAAACTA-GAAGAGTCATACTAAT-CCC-TTTTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * * * * * * * *
44170 TTCTCATAATGATACATGATATTTACGATTTGGTTTCGCATGAAAGGCTTTTTTCTCACCAGTTT
191 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTC-CCCCAATTT
* * * * * * *
44235 TTCTGAAGTCTAACTTCGTGCCCCAATTGAGATAAACATTGATTCTAGTAATGACCTTCATTCAT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
* *
44300 TTTGTGATTAGGCACTAAAAACACATTCTTCACATTAGGATAAAGGATAATGTTGATTTTCTTTT
320 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * * * * *
44365 GCATAGAAATCCTCTCTTTGCCTTATTTACCATAAAATCAAAGTTCATCCCTTAAAAAAGAGAAG
385 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* *
44430 CATCGATTATCGTAACTG-TCTCC
450 CATCGATTCTCGTAACAGTTC-CC
* * *
44453 ATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACGTT-ATTGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGA-TGCTT
* * *
44517 TGATGACGCAAAAAAAGCTGTTT-TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
65 TGGTGACGC-AAAAAAGCT-TTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
44581 ATGAGAAACTAGAATAGTCATACTAATCCTTGTTCTTTTCTAA-ATTAGGCACCATAGACATAGT
128 AAGACAAACTAGAAGAGTCATACTAATCCCT-TT-TTTTC-AAGATTAGGCACCATAAACATAGT
* *
44645 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAAAAAAGGTTTTCTTCCCCCCAAT
190 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG-AAAGAAAGGCTTTCTT-CCCCCAAT
* * * *
44710 TTTTGCAAAGTCTGACTCCGTGCCTCAAATGAAACAAACATGGATTCCAGTAATGACCTTCATTC
253 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
** * * * *
44775 ATTTTGTGATTAAACCCTATAAACACATTTTTCACATTAGGAAAAAGGATAATGATGAATTTCTT
318 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
* * *
44840 TTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAGGGCA
383 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * *
44905 AGCATCGAGTCTAGTAATAG-TCTCC
448 AGCATCGATTCTCGTAACAGTTC-CC
* ** * * *
44930 ATTATTTTCAAGATTGGGAACCAAAAACACATTTTTTTCAGTAGGATACATGACGTTGATGCTTG
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * ** *
44995 GGTAATGCAAAAAAAAGCTTTTCTCACCATTGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATA
66 GGTGACGC--AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * * *
45060 AGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGACATCATAAACATAGTCT
129 AGACAAACTAGAAGAGTCATACTAATCCCT-TT-TTTTCAAGATTAGGCACCATAAACATAGTCT
* * *
45125 TCTCATAAGGATGCACGATATTGATGCCTTGGTTTT-AAAAAAAGGCTTTCTTCCCCCCAATTTT
192 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT-CCCCCAATTTT
* * * * * *
45189 CGTATAGTCTAACTTCGTGCCTCAAATGAGACAAATATTGATTCTAGTAATGATCTTCATTCATT
256 TGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATT
* * * * * * * * * * * *
45254 TTGGGTTTAGACACTATAAACACCTTCTGCTCATTAGGATAAATGTTATTGATAATTTTCTGTTC
321 TTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
* * *
45319 CATGGAAATCTTTTGTTTGCCTTATTTACCTTAAAAACAAAGTTCATCCCTTAAATAAGGCAAGC
386 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
45384 ATCGAGGCACGTAATAAGGCATC-TACTAAAGTTTCC
451 ATC---G-A--T--T----C-TCGTA--ACAGTTCCC
* *
45420 ATTCTTTTCAAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGATACATGACACTGATGCTA
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * * * * *
45484 TGGTGATGCAGAGAAAGCTTTTTCTTTCCACCGCTTTTGATAAAATCAACA-TTTATCTCTTAAA
65 TGGTGACGCA-AAAAAGC-TTTTCTTACCACCGTTTTTGATAGAATCAA-AGTTTGTCTCTTAAA
**
45548 TAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCATAATAAACATAG
127 TAAGACAAACTA-GAAGAGTCATACTAATCCC--TTTTTTTCAAGATTAGGCACCATAAACATAG
* * * * *
45612 TCTTCTCGTAAGGATACACCATACTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAAT
189 TCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAAT
* * * *
45677 TTTTGTAAAGTCTTACTTTGTGCCTTAAATGAGACAAACATGGATTCTAGTAAAGACCTTCATTC
253 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
* * *
45742 ATTTTGTGATTAGGCATTATAAACACATTCTTCACATGACGATAAAGGATAATGATGATTTTCTT
318 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
* * * *
45807 CTGCATGGAAATCTTTTGTTTACCTTATTTACCTTAAAATCAAAGTTCATCTCTTAAATAAGACA
383 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * *
45872 AGAATCGATCCTTGTAACAATTTCC
448 AGCATCGATTCTCGTAACAGTTCCC
* *
45897 ATTCTTTTCATTG-TTGGGAACCAAAAACACATTCCTTT-ATTAGGATACATGACATTGATGCTA
1 ATTCTTTTCA-AGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTT
* * *
45960 TGGTGACGCAAAAAAAGCTTTTCTTATCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATA
65 TGGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
46025 AGACAAACGT-GAAGAGTCATACTAATTCCAATTTTTTTCAAGATTAGGCACCAAAAACATAGTC
129 AGACAAAC-TAGAAGAGTCATACTAA-TCC-CTTTTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * *
46089 TTCTCATAAGGATACACTATATTGATGCTTTGGTTTCGTAAGAAAGAC-TTCTTTCGCACCAATT
191 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTC-TTC-CCCCAATT
* * ** * *
46153 TTT-CAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGGATTAGAGTAATAACCTTCATTTA
254 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
*
46217 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATGATGATGATTTTCTTT
319 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* * *
46282 TGCATGGAAATCTTTTCCTTGCCGTATTTATCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
384 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
*
46347 GCATCGATTCTCTTAACAG-TCTCC
449 GCATCGATTCTCGTAACAGTTC-CC
* * * * *
46371 ATTCTTTTCAAGATTGAGAACCAATATCACATTTCC-TTGATTAGGATACATGACATTGATGCTA
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * **
46435 TCGTGATGCAGAAAAAGCTTTTCTTACC-CCTGTTTTTGATAGAATCAATTTTTGTCTCTTAAAT
65 TGGTGACGCA-AAAAAGCTTTTCTTACCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
46499 AAGACAAA-TGTGAAGAGTCATACTTATCCCTATGTTTTACAAGATTAGGCGCCATAAACATAGT
128 AAGACAAACT-AGAAGAGTCATACTAATCCCT-T-TTTTTCAAGATTAGGCACCATAAACATAGT
* * * *** * *
46563 CTTCTCATAATGATATACTATATTGATGCTTTCACTTCGCAAGAAAGGCTTT-TTCCCACCAATT
190 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAATT
* * * * *
46627 TTCGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAATATTGATTCTAGTAATGATCTTCATTCA
254 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
* * * * * * * * * *
46692 TTTTGGGTTTAGACACTATAAACACCTTCTGCTCATTAGGATAAATGTTATTGATGATTTTCTGT
319 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* * *
46757 TGCATGGAAATC-TTTGTTTGCCTTATTTACCTTAAAAACAAAGTTCATCCCTTAAATAAAGGCA
384 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACA
** * *
46821 AGCATCGAGGCACGTAATAG-TCTCC
448 AGCATCGATTCTCGTAACAGTTC-CC
* *
46846 ATTCTTTTCAAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGATACATGACACTGATGCTA
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * * * * *
46910 TGGTGATGCAGAGAAAGCTTTTTCTTTCCACCGCTTTTGATAGAATCAACGTTTATCTCTTAAAT
65 TGGTGACGCA-AAAAAGC-TTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
**
46975 AAGACAAAC-ATGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCATAATAAACATAGT
128 AAGACAAACTA-GAAGAGTCATACTAATCCC--TTTTTTTCAAGATTAGGCACCATAAACATAGT
* * * *
47039 CTTCTCGTAAGGATACACTATACTGATGCTTTGGTTTTGCAAA-AAAGGCTTTTTTCCCACCAAT
190 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG-AAAGAAAGGCTTTCTTCCC-CCAAT
* * *
47103 TTTTGTAAAGTCTTACTTTGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
253 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
* * * *
47168 ATTTTGTGATTAGGTATTATAAACACATTCTTCACATGACGATAAAGGATAATGATGATTTTCTT
318 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
* * *
47233 CTGCATGGAAATCTTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCATCTCTTAAATAAGACA
383 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * *
47298 AGCATCGATCCTTGTAACAATTTCC
448 AGCATCGATTCTCGTAACAGTTCCC
** * **
47323 ATTCTTTTCATTATTGGGAATCAAAAACACATTCCTTT-ATTAGGATACATGACATTGATGCAAT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * * *
47387 GGTGACGGAAAAAAAGCTTTTCTTATCGCCGTTTTTGATAGAATCAAAATTTATCTCTTAAATAA
66 GGTGAC-GCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
47452 GACAAACGT-GAAGAGTCATACTAATTCCAATTTTTTTCAAGATTAGGCACCAAAAACATAGTCT
130 GACAAAC-TAGAAGAGTCATACTAA-TCC-CTTTTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * *
47516 TCTCATAAGGATACACTATATTGATGCTTTGGTTTCGTAAGAAAGGC-TTCTTTCGCACCAATTT
192 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTC-TTC-CCCCAATTT
* * * * *
47580 TT-CAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGGATTCGAGTAATAACCTTCATTTAT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
*
47644 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATGATGATGATTTTCTTTT
320 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* *
47709 GCATGGAAATCTTTTCTTTGCCGTATTTATCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
385 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
*
47774 CATCAATTCTCGTAACAG-TCTCC
450 CATCGATTCTCGTAACAGTTC-CC
* * * * * * *
47797 ATTCTTTTCAAGATTGAGAA-CAATATCACATTTCC-TTGATTAGGACACATGACATAGATGCTA
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * *
47860 TCGTGATGCAGAAAAAGCTTTTCTTACC-CCTGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAT
65 TGGTGACGCA-AAAAAGCTTTTCTTACCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
47924 AAGAGAAACTAGAACAGTCATACTAATCCCTATTTTTTCCAAGATTTA-GCACCATAAACATAGT
128 AAGACAAACTAGAAGAGTCATACTAATCCCT-TTTTTT-CAAGA-TTAGGCACCATAAACATAGT
* ** * * * *
47988 CTTCTCATATGGATACATAATTTTGATGCTTTGGTTTTGAAGGAAATGCTTTCTTCTTCCCAATT
190 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTC-CCCCAATT
* * * * * * *
48053 TTTGTAAAGTCGGATTTCATGTCTCAAATCAGACAAACATGGATTCTAATAATGACTTTCATTCA
254 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
* *
48118 TTTTGTGATTAGGCACTATAAACACATTTTTCACATTAGGATAAAGAATAATGATGATTTTCTTT
319 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* * * * *
48183 TGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAATTCATCACTTAAATTAGATAA
384 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * *
48248 GGAT-GATCCTCGTAATAGTTCCC
449 GCATCGATTCTCGTAACAGTTCCC
* * * * *
48271 ATTCTTTTCAA-ATTTGAGAACCAAAAATACATTCTTTTCATTAGGATACATGACATTTACGCTT
1 ATTCTTTTCAAGA-TTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTT
* * * *
48335 TGGTAACGCAAAAAAAGCTTTTCTCACCACCGTTTTTGAAAGAATCAAAGTTTGTCTCTCAAATA
65 TGGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * **
48400 AGAGAAACTAGAACG-GTCAAACTAATTCCTTTTTTTTCAAGATTAGGCACCATAAATGTAGTCT
129 AGACAAACTAGAA-GAGTCATACTAA-TCCCTTTTTTTCAAGATTAGGCACCATAAACATAGTCT
*
48464 TCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAAAG-AAGTGCTTTCTTCCACCCAATTT
192 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG-GCTTTCTTCC-CCCAATTT
* * * *
48528 TCGTAAAGTCGGACTTCGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGACCTTTATTCAT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
48593 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
320 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
**
48658 GCATGGAAATCTTTTCTTCACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAA-AGAGACAA
385 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAA
*
48722 GCATCGATTCTCTTAACAGTTCCC
449 GCATCGATTCTCGTAACAGTTCCC
*
48746 ATTCTTTTCTAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGATACATGACATTGATGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * * *
48810 TGGTGACGCAAAAAATGCTTTTATTACCACCGTTTTTGATAGAATCAACGATTGCCTCTTAAATA
65 TGGTGACGCAAAAAA-GCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
48875 AGACAAACGT-GAAGAGTCAAACTAATCCCTATTTTTCTCAAGATCAGGCACCATTAACATAGTC
129 AGACAAAC-TAGAAGAGTCATACTAATCCCT-TTTTT-TCAAGATTAGGCACCATAAACATAGTC
* * ** * * *
48939 TTCTCGTAAGGATACACTATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTT
191 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAATTT
* ** *
49004 TTGTAAAGTCTGACTCCGTGCCTCAAATGAGACAAATGTTGATTCTAGTAATGACCTTCATTCAT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
* * *
49069 TTTGTGATTAGGCACTATAAACACATTCATCACATTAAGATAAAGGATAGTGATGATTTTCTTTT
320 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * ** *
49134 GCATGGAAATATTTTCTTTGCCTTATTTACATTAAAAAAAAAGTTCATCCCTTAAATAAGATAAG
385 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
49199 CATCGATTCTCGTAACAGTTCCC
450 CATCGATTCTCGTAACAGTTCCC
* *
49222 ATTCTTTTCAAGATTGGGAACTAAAAACACATTCTTTTCATTAGGATACATGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * *
49287 GGTAACGCAAAAAAGCTTTTCTCACCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAG
66 GGTGACGCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * * * * * * *
49352 AGAAGCTAGAATAGTCGTACTAA-ACCTTGTTCCTTTCAGGATAACGCTCCATAAACGTACTCTT
131 ACAAACTAGAAGAGTCATACTAATCCCTT-TT--TTTCAAGATTAGGCACCATAAACATAGTCTT
* * * * * *
49416 CTCGTAAGGATGCACGATGTTGATTCTTTGGTTTTGGAAGAAAGGCTTTCTTCCCATCAATTTTT
193 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAATTTTT
* * * *
49481 GTAAAGTCTGACTTCGTGCCTCAATTGAGATAAACATTGATTCTAGTAATGATCTTCATTCATTT
257 GTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTT
* * * * * * * * *
49546 TGTGATTAGGCATTATAAACATATTGTCCACAATACGATAAAAGATGAGGATGATTTTCTTTTGC
322 TGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
* * *
49611 ATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAATTTCATCCCTTAAATGAGGCAAGCA
387 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT-AAG--A-C-
* *
49676 ATAGTGTCCATTCTTTTCTCTGCCTTATTCTCGTAATAGTTTCC
447 A-A--G--CA--------TC-G----ATTCTCGTAACAGTTCCC
* * * *
49720 ATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACAAGACACTGAAGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * ** *
49785 GGTGACGCAAAAAAAAACTTTTCTTACTATTGTTTTTGATAGAATCAAAG-TTGTCTCTGAAATA
66 GGTGACGC--AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
49849 CGACAAAC-ATGAAGAGTCATACTAATCCCCACTCTTTTT-AAGATTTGGCACCATAAACATAGT
129 AGACAAACTA-GAAGAGTCATACTAAT--CC-CTTTTTTTCAAGATTAGGCACCATAAACATAGT
* * * * * * * *
49912 CTTCTTATAATGATACACGATATTTATGCTTTGGTTTCGCATGAAAGGCTTTTTTCCCACCAGTT
190 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAATT
* * * * *
49977 TTTGTGAAGTCTAACTTCGTGCCTCAATTGAGACAAACATTGATTCTAGTAATGACCTTCTTTCA
254 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
* * * * * *
50042 TTTTGTCATTAGGCACTAAAAACAGATTCTTGACATTAGGATAAACGATAATGATGATTTTTTTT
319 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* * * **
50107 TGCATAGAAATCTTCTCTTTGCCTTATTTGCCTTAAAATCAAAGTTTTTCCCTTAAATAAGACAA
384 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
50172 GCATCGATTATCGTAACTA-TCTCCA
449 GCATCGATTCTCGTAAC-AGT-TCCC
* * * * *
50197 ATT-TTTTCAAGATTAGGAACTAGAAACTCATTCCCTTCATTAGGATACATGACATT-ATTGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGA-TGCTT
* * * * *
50260 TGATGACACAGAAAAAGATGTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
65 TGGTGACGCA-AAAAAGCT-TTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
** * * ** *
50324 AAGGGAAACTAGAATAGTCATACTAATCCTTGTTCTTTTCTGGATTAGGCACCATAGACATAGTC
128 AAGACAAACTAGAAGAGTCATACTAATCCCT-TT-TTTTCAAGATTAGGCACCATAAACATAGTC
*
50389 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGG-TTTTTTCCCCCCAATTT
191 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT-CCCCCAATTT
* * * *
50453 TTTTAAAGTTTGACTTCGTGCCTCAAATGAAACAAACATGGATTCCAGTAATGACCTTCATTCAT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
*
50518 TTTGTGATTAGGCACTATAAACACATTTTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
320 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * *
50583 GCACGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAGGGA-AA
385 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAA
* * *
50647 GCATCGAGTCTAGTAATAG-TCTCC
449 GCATCGATTCTCGTAACAGTTC-CC
* * * * * **
50671 ATTATTTTCATGATTGGGAACCAAAAACACATTCTTTTCTTTAGGATACATAATGTTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * *
50736 GGTAAAGCAAAAAAAAGCTTTTCTTAGCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATA
66 GGTGACGC--AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * *
50801 AGAGAAGCTAGAATAGTCATACTAA-ACCTTGTTCATTTCAGGATTAGACACCACAAACATAGTC
129 AGACAAACTAGAAGAGTCATACTAATCCCTT-TT--TTTCAAGATTAGGCACCATAAACATAGTC
* * *
50865 TTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTAAAAAAAAGGCTTTCTTCCCCCTAATTT
191 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCC-AATTT
* * * *
50930 TTGTAAAGTCTGACTTCGTGCCTCAAATGAAACAAATATTGATTCTAGTAATGATCTTCATTCAT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
* * * * * * * * * *
50995 TTTGGGATTAGACACTATAAACACCTTCTCCTCATTAAGATAAATGTTATTGATGATTTTCTGTT
320 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * *
51060 GCATGGAAATCTTTTGTTTGCCTTATTTACCTTAAAAACAAAGTTCATCCCTTAAATAAGGCAAG
385 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* *
51125 CATCGAGGCACGTAATAAGGCATC-TACTAAAGTTTCC
450 CATC---G-A--T--T----C-TCGTA--ACAGTTCCC
* * * *
51162 ATTCTTTTCAAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGGTACATGACACTGATGATA
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * *
51226 TGGTGATGCAGAGAAAGCTTTTTCTTTCCACCGTTTTTGATAGAATCAACA-TTTGTCTCTTAAA
65 TGGTGACGCA-AAAAAGC-TTTTCTTACCACCGTTTTTGATAGAATCAA-AGTTTGTCTCTTAAA
**
51290 TAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTTTTTCAAGATTAGGCATAATAAACATAGT
127 TAAGACAAACTA-GAAGAGTCATACTAATCCCT-TTTTTTCAAGATTAGGCACCATAAACATAGT
* * * * *
51354 CTTCTCATAGGGATACACTATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATT
190 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAATT
* * *
51419 TTTGTAAAGTCTTACTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGACCTTTATTCA
254 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
* * * *
51484 TTTTGTGATTAGGCATTATAAGCACATTCTTCACATGACGATAAAGGATAATGATGATTTTCTTT
319 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* *
51549 TGCATGGAAATCTTTTCTTTGCCGTATTTACCTTAAAATCAAAGTTCATCTCTTAAATAAGACAA
384 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *
51614 GCATCGATCCTTGTAACAATTTCC
449 GCATCGATTCTCGTAACAGTTCCC
* *
51638 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTT-ATTAGGACACAAGACATTGATG-TT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGATGCTT
* * *
51701 ATGGTGACGCAAAAAAAGCTTTTCTTACTACCGTTTTTGATAGAATCAAAATTTATCTCTTAAAT
65 -TGGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
51766 AAGACAAACGT-GAAGAGTCATACTAATTCCAATTTTTTTCAAGATTAGGCACCAAAAACATAGT
128 AAGACAAAC-TAGAAGAGTCATACTAA-TCC-CTTTTTTTCAAGATTAGGCACCATAAACATAGT
* * * * * * *
51830 CTTCTCATAAGGATACACTATATTGATTCTTTGG-TTTCATAAGAAAGGCTTTTTTTGCACCAAG
190 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGGC-TTTCTTCCCCCAAT
* * *
51894 TTTTGCAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTT
253 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
*
51959 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATGATGATGATTTTCTT
318 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
* * * * *
52024 TTGCATTGAAATCATCTCTTTGCCATATTTACCTTAAAATCAAAGTTCACCCCTTAAATAAGACA
383 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
52089 AGCATCGATTCTCGTAACAG-TCTCC
448 AGCATCGATTCTCGTAACAGTTC-CC
* * * * * *
52114 ATTCTTTTCGAGATTGAGAACCAATATCACATTTCC-TTGATTAGGATACATGACATTGATGCTA
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * *
52178 TGGTGATGCAGAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAATGTTTGTCTCTTAAATA
65 TGGTGACGCA-AAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
52243 AGACAAACGT-GAAGAGTCATACTTATCCCTATGTTTTTCAAGATTAGGCGCCATAAACATAGTC
129 AGACAAAC-TAGAAGAGTCATACTAATCCCT-T-TTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * ** * * * * * *
52307 TTCGCATAATGACATATTATATTGATGCTTTGGCTTCGCAAGAAAAGCTTTTTTCCCACCAAGTT
191 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCAATTT
* * * * * * * * *
52372 TTGTAAAGTCTAACTTCATGCCTCAATTGAGACAAACATGTATTATAGTAATGATCTACACTCTT
255 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
52437 TTTGTGATTAGGCACTATAAACACATTCTT
320 TTTGTGATTAGGCACTATAAACACATTCTT
52467 TACAAGCATT
Statistics
Matches: 8461, Mismatches: 1203, Indels: 554
0.83 0.12 0.05
Matches are distributed among these distances:
472 1 0.00
473 44 0.01
474 1031 0.12
475 2031 0.24
476 2401 0.28
477 1133 0.13
478 196 0.02
479 4 0.00
480 8 0.00
481 4 0.00
482 1 0.00
483 2 0.00
484 2 0.00
485 5 0.00
486 1 0.00
487 4 0.00
488 7 0.00
489 14 0.00
490 448 0.05
491 321 0.04
492 12 0.00
493 5 0.00
494 2 0.00
495 5 0.00
496 1 0.00
497 2 0.00
498 321 0.04
499 270 0.03
500 141 0.02
501 39 0.00
502 3 0.00
503 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (472 bp):
ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
GGTGACGCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
ACAAACTAGAAGAGTCATACTAATCCCTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCAATTTTTGTAA
AGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTG
ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
TTCTCGTAACAGTTCCC
Found at i:46452 original size:475 final size:475
Alignment explanation
Indices: 43963--52466 Score: 10117
Period size: 475 Copynumber: 17.8 Consensus size: 475
43953 CTACCTTATG
* * * * * *
43963 CTCGTAATAGTGTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTTATCAGGATACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * * **
44028 AGACATTGATGCTTTGGTGATGCAAAAAAAACTTTTCTTACCATTGTTTTTGATAGAATCAAAG-
66 TGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
* * * * * *
44092 TTGTCTCTGAAATACGACAAACATGAAGAGTCATACTAATCCCCACTCTTTTCAAGATTTGGCAC
131 TTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCAC
* * * * * *
44157 CATAAACATAGTCTTCTCATAATGATACA-TGATATTTACGATTTGGTTTCGCATGAAAGGCTTT
195 CATAAACATAGTCTTCTCATAAGGATACACT-ATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
* * * * * * * * *
44221 TTTCTCACCAGTTTTTCTGAAGTCTAACTTCGTGCCCCAATTGAGATAAACATTGATTCTAGTAA
259 TTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
*
44286 TGACCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTTCACATTAGGATAAAGGATAAT
324 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* * * * *
44351 GTTGATTTTCTTTTGCATAGAAATCCTCTCTTTGCCTTATTTACCATAAAATCAAAGTTCATCCC
389 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
* *
44416 TTAAAAAAGAGAAGCATCGATT
454 TTAAATAAGACAAGCATCGATT
* * * *
44438 ATCGTAACTGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * * *
44503 TGACGTT-ATTGCTTTGATGACGCAAAAAAAGCTGTTT-TTTCCACCATTTTTGATAGAATCAAA
66 TGACATTGA-TGCTATGGTGACGCAAAAAAAGCT-TTTCTTACCACCGTTTTTGATAGAATCAAA
* * * * * *
44566 GTTTGTCTCTTAAATATGAGAAACTAGAATAGTCATACTAATCCTTGTTCTTTTCTAA-ATTAGG
129 GTTTGTCTCTTAAATAAGACAAACT-GAAGAGTCATACTAATCCCTATTTTTTTC-AAGATTAGG
* * * *
44630 CACCATAGACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAAAAAAGG-
192 CACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTG-CAAGAAAGGC
* * * * *
44694 TTTTCTTCCCCCCAATTTTTGCAAAGTCTGACTCCGTGCCTCAAATGAAACAAACATGGATTCCA
256 TTTT-TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTA
** * * *
44759 GTAATGACCTTCATTCATTTTGTGATTAAACCCTATAAACACATTTTTCACATTAGGAAAAAGGA
320 GTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGA
* *
44824 TAATGATGAATTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCA
385 TAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCA
* * *
44889 TCCCTTAAATAGGGCAAGCATCGAGT
450 TCCCTTAAATAAGACAAGCATCGATT
* * * ** *
44915 CTAGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTTTTTTCAGTAGGATACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * * ** *
44980 TGACGTTGATGCT-TGGGTAATGCAAAAAAAAGCTTTTCTCACCATTGTTTTTTATAGAATCAAA
66 TGACATTGATGCTAT-GGTGACGC-AAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAA
* * * * * * * * *
45044 GTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGAC
129 GTTTGTCTCTTAAATAAGACAAACT-GAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGC
* * * * * *
45109 ATCATAAACATAGTCTTCTCATAAGGATGCACGATATTGATGCCTTGGTTTT-AAAAAAAGGCTT
193 ACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTT
* * * * * * *
45173 TCTTCCCCCCAATTTTCGTATAGTCTAACTTCGTGCCTCAAATGAGACAAATATTGATTCTAGTA
258 TTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * * * * * *
45238 ATGATCTTCATTCATTTTGGGTTTAGACACTATAAACACCTTCTGCTCATTAGGATAAATGTTAT
323 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAA
* * * * *
45303 TGATAATTTTCTGTTCCATGGAAATCTTTTGTTTGCCTTATTTACCTTAAAAACAAAGTTCATCC
388 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
*
45368 CTTAAATAAGGCAAGCATCGAGGCACGTAAT
453 CTTAAATAAGACAAGCATC---G-A--T--T
* *
45399 AAGGCATC-TACTAAAGTTTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTA
1 ----C-TCGTA--ACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTA
* * * * * * *
45463 GGATACATGACACTGATGCTATGGTGATGCAGAGAAAGCTTTTTCTTTCCACCGCTTTTGATAAA
59 GGATACATGACATTGATGCTATGGTGACGCAAAAAAAGC-TTTTCTTACCACCGTTTTTGATAGA
*
45528 ATCAACA-TTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTTTTTTCAAG
123 ATCAA-AGTTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAG
** * * *
45592 ATTAGGCATAATAAACATAGTCTTCTCGTAAGGATACACCATACTGATGCTTTGGTTTTGCAAGA
186 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGA
* * *
45657 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTTACTTTGTGCCTTAAATGAGACAAACATGGAT
251 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGAT
* * * *
45722 TCTAGTAAAGACCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTTCACATGACGATAA
316 TCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* * *
45787 AGGATAATGATGATTTTCTTCTGCATGGAAATCTTTTGTTTACCTTATTTACCTTAAAATCAAAG
381 AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * *
45852 TTCATCTCTTAAATAAGACAAGAATCGATC
446 TTCATCCCTTAAATAAGACAAGCATCGATT
* * * * *
45882 CTTGTAACAATTTCCATTCTTTTCATTG-TTGGGAACCAAAAACACA-TTCCTTTATTAGGATAC
1 CTCGTAACAGTCTCCATTCTTTTCA-AGATTGGGAACCAAAAACACATTTCCTTCATTAGGATAC
* *
45945 ATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTATCACCGTTTTTGATAGAATCAAAA
65 ATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAG
* * *
46010 TTTATCTCTTAAATAAGACAAACGTGAAGAGTCATACTAATTCCAATTTTTTTCAAGATTAGGCA
130 TTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCA
* * * * *
46075 CCAAAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTCGTAAGAAAGACTTC
194 CCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
* * * **
46140 TTTCGCACCAATTTTT-CAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGGATTAGAGTAA
259 TTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
46204 TAACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATGAT
324 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* * *
46269 GATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCGTATTTATCTTAAAATCAAAGTTCATCCC
389 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
46334 TTAAATAAGACAAGCATCGATT
454 TTAAATAAGACAAGCATCGATT
* * * * *
46356 CTCTTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAATATCACATTTCCTTGATTAGGATACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * **
46421 TGACATTGATGCTATCGTGATGCAGAAAAAGCTTTTCTTACC-CCTGTTTTTGATAGAATCAATT
66 TGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACC-GTTTTTGATAGAATCAAAG
* * * * *
46485 TTTGTCTCTTAAATAAGACAAATGTGAAGAGTCATACTTATCCCTATGTTTTACAAGATTAGGCG
130 TTTGTCTCTTAAATAAGACAAA-CTGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCA
* * *** *
46550 CCATAAACATAGTCTTCTCATAATGATATACTATATTGATGCTTTCACTTCGCAAGAAAGGC-TT
194 CCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
* * * *
46614 TTTCCCACCAATTTTCGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAATATTGATTCTAGTAA
259 TTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * * * * * * * *
46679 TGATCTTCATTCATTTTGGGTTTAGACACTATAAACACCTTCTGCTCATTAGGATAAATGTTATT
324 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* * *
46744 GATGATTTTCTGTTGCATGGAAATC-TTTGTTTGCCTTATTTACCTTAAAAACAAAGTTCATCCC
389 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
* **
46808 TTAAATAAAGGCAAGCATCGAGG
454 TTAAAT-AAGACAAGCATCGATT
* *
46831 CACGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * * * * *
46896 TGACACTGATGCTATGGTGATGCAGAGAAAGCTTTTTCTTTCCACCGCTTTTGATAGAATCAACG
66 TGACATTGATGCTATGGTGACGCAAAAAAAGC-TTTTCTTACCACCGTTTTTGATAGAATCAAAG
*
46961 TTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCA
130 TTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCA
** * * *
47026 TAATAAACATAGTCTTCTCGTAAGGATACACTATACTGATGCTTTGGTTTTGCAAAAAAGGCTTT
194 CCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
* * *
47091 TTTCCCACCAATTTTTGTAAAGTCTTACTTTGTGCCTTAAATGAGACAAACATGGATTCTAGTAA
259 TTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * *
47156 TGACCTTCATTCATTTTGTGATTAGGTATTATAAACACATTCTTCACATGACGATAAAGGATAAT
324 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* * *
47221 GATGATTTTCTTCTGCATGGAAATCTTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCATCTC
389 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
*
47286 TTAAATAAGACAAGCATCGATC
454 TTAAATAAGACAAGCATCGATT
* * * ** * *
47308 CTTGTAACAATTTCCATTCTTTTCATTATTGGGAATCAAAAACACA-TTCCTTTATTAGGATACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * * *
47372 TGACATTGATGCAATGGTGACGGAAAAAAAGCTTTTCTTATCGCCGTTTTTGATAGAATCAAAAT
66 TGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
* * *
47437 TTATCTCTTAAATAAGACAAACGTGAAGAGTCATACTAATTCCAATTTTTTTCAAGATTAGGCAC
131 TTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCAC
* * * *
47502 CAAAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTCGTAAGAAAGGCTTCT
195 CATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTT
* * * *
47567 TTCGCACCAATTTTT-CAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGGATTCGAGTAAT
260 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
47631 AACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATGATG
325 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* *
47696 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTATTTATCTTAAAATCAAAGTTCATCCCT
390 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
*
47761 TAAATAAGACAAGCATCAATT
455 TAAATAAGACAAGCATCGATT
* * * * *
47782 CTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAA-CAATATCACATTTCCTTGATTAGGACACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * *
47846 TGACATAGATGCTATCGTGATGCAGAAAAAGCTTTTCTTACC-CCTGTTTTTGATAGAATCAAAG
66 TGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACC-GTTTTTGATAGAATCAAAG
* * * *
47910 TTTGTCTCCTAAATAAGAGAAACTAGAACAGTCATACTAATCCCTATTTTTTCCAAGATTTA-GC
130 TTTGTCTCTTAAATAAGACAAACT-GAAGAGTCATACTAATCCCTATTTTTTTCAAGA-TTAGGC
* * *
47974 ACCATAAACATAGTCTTCTCATATGGATACA-TAATTTTGATGCTTTGGTTTTG-AAGGAAATGC
193 ACCATAAACATAGTCTTCTCATAAGGATACACT-ATATTGATGCTTTGGTTTTGCAA-GAAAGGC
* * * * * * *
48037 TTTCTTCTTC-CCAATTTTTGTAAAGTCGGATTTCATGTCTCAAATCAGACAAACATGGATTCTA
256 TTTTTTC-CCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * *
48101 ATAATGACTTTCATTCATTTTGTGATTAGGCACTATAAACACATTTTTCACATTAGGATAAAGAA
320 GTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGA
* *
48166 TAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAATTCA
385 TAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCA
* * * * *
48231 TCACTTAAATTAGATAAGGAT-GATC
450 TCCCTTAAATAAGACAAGCATCGATT
* * * *
48256 CTCGTAATAGT-TCCCATTCTTTTCAA-ATTTGAGAACCAAAAATACA-TTCTTTTCATTAGGAT
1 CTCGTAACAGTCT-CCATTCTTTTCAAGA-TTGGGAACCAAAAACACATTTC-CTTCATTAGGAT
* * * * * *
48318 ACATGACATTTACGCTTTGGTAACGCAAAAAAAGCTTTTCTCACCACCGTTTTTGAAAGAATCAA
63 ACATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAA
* * * *
48383 AGTTTGTCTCTCAAATAAGAGAAACTAGAACG-GTCAAACTAATTCCT-TTTTTTTCAAGATTAG
128 AGTTTGTCTCTTAAATAAGACAAACT-GAA-GAGTCATACTAATCCCTATTTTTTTCAAGATTAG
** * *
48446 GCACCATAAATGTAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAAAG-AAGTG
191 GCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAG-G
* * * *
48510 CTTTCTT-CCACCCAATTTTCGTAAAGTCGGACTTCGTGCCTCAAATGAGACAAACCTGGATTCT
255 CTTTTTTCCCA-CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCT
*
48574 AGTAATGACCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
319 AGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
**
48639 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTCACCTTATTTACCTTAAAATCAAAGTTC
384 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTC
48704 ATCCCTTAAA-AGAGACAAGCATCGATT
449 ATCCCTTAAATA-AGACAAGCATCGATT
* *
48731 CTCTTAACAGT-TCCCATTCTTTTCTAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATAC
1 CTCGTAACAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATAC
* * * *
48795 ATGACATTGATGCTTTGGTGACGCAAAAAATGCTTTTATTACCACCGTTTTTGATAGAATCAACG
65 ATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAG
* * * * *
48860 ATTGCCTCTTAAATAAGACAAACGTGAAGAGTCAAACTAATCCCTATTTTTCTCAAGATCAGGCA
130 TTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCA
* * ** *
48925 CCATTAACATAGTCTTCTCGTAAGGATACACTATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
194 CCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
* ** *
48990 TTTCCCACCAATTTTTGTAAAGTCTGACTCCGTGCCTCAAATGAGACAAATGTTGATTCTAGTAA
259 TTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
49055 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCATCACATTAAGATAAAGGATAGT
324 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* * **
49120 GATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCTTATTTACATTAAAAAAAAAGTTCATCCC
389 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
*
49185 TTAAATAAGATAAGCATCGATT
454 TTAAATAAGACAAGCATCGATT
* *
49207 CTCGTAACAGT-TCCCATTCTTTTCAAGATTGGGAACTAAAAACACA-TTCTTTTCATTAGGATA
1 CTCGTAACAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTTC-CTTCATTAGGATA
* * * * *
49270 CATGACATTGATGCTTTGGTAACGC-AAAAAAGCTTTTCTCACCACTGTTTTTGATAAAATCAAA
64 CATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAA
* * * * * * * ** * * *
49334 GTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCGTACTAAACCTTGTTCCTTTCAGGATAACGC
129 GTTTGTCTCTTAAATAAGACAAACT-GAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGC
* * * * * * * * *
49399 TCCATAAACGTACTCTTCTCGTAAGGATGCACGATGTTGATTCTTTGGTTTTGGAAGAAAGGCTT
193 ACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTT
* * * * *
49464 TCTTCCCATCAATTTTTGTAAAGTCTGACTTCGTGCCTCAATTGAGATAAACATTGATTCTAGTA
258 TTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * * * * *
49529 ATGATCTTCATTCATTTTGTGATTAGGCATTATAAACATATTGTCCACAATACGATAAAAGATGA
323 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAA
* * *
49594 GGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAATTTCATCC
388 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
*
49659 CTTAAATGAGGCAAGCAATAGTGTCCATTCTTTTCTCTGCCTTATT
453 CTTAAAT-AAG--A-C-A-A--G--CA--------TC-G----ATT
* * *
49705 CTCGTAATAGTTTCCATTCTTTTCAAGATTAGGAACCAAAAACACA-TTCCTTTCATTAGGATAC
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGATAC
* * * * * * **
49769 AAGACACTGAAGCTTTGGTGACGCAAAAAAAAACTTTTCTTACTATTGTTTTTGATAGAATCAAA
65 ATGACATTGATGCTATGGTGACGC-AAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAA
* * * * *
49834 G-TTGTCTCTGAAATACGACAAACATGAAGAGTCATACTAATCCCCACTCTTTTT-AAGATTTGG
129 GTTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTA-TTTTTTTCAAGATTAGG
* * * * * *
49897 CACCATAAACATAGTCTTCTTATAATGATACACGATATTTATGCTTTGGTTTCGCATGAAAGGCT
192 CACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCT
* * * * *
49962 TTTTTCCCACCAGTTTTTGTGAAGTCTAACTTCGTGCCTCAATTGAGACAAACATTGATTCTAGT
257 TTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * * *
50027 AATGACCTTCTTTCATTTTGTCATTAGGCACTAAAAACAGATTCTTGACATTAGGATAAACGATA
322 AATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATA
* * * * **
50092 ATGATGATTTTTTTTTGCATAGAAATCTTCTCTTTGCCTTATTTGCCTTAAAATCAAAGTTTTTC
387 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
50157 CCTTAAATAAGACAAGCATCGATT
452 CCTTAAATAAGACAAGCATCGATT
* * * * * *
50181 ATCGTAACTA-TCTCCAATT-TTTTCAAGATTAGGAACTAGAAACTCATTCCCTTCATTAGGATA
1 CTCGTAAC-AGTCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATA
* * * * * * *
50244 CATGACATT-ATTGCTTTGATGACACAGAAAAAGATGTTT-TTTCCACTGTTTTTGATAGAATCA
64 CATGACATTGA-TGCTATGGTGACGCAAAAAAAGCT-TTTCTTACCACCGTTTTTGATAGAATCA
** * * * * **
50307 AAGTTTGTCTCTTAAATAAGGGAAACTAGAATAGTCATACTAATCCTTGTTCTTTTCTGGATTAG
127 AAGTTTGTCTCTTAAATAAGACAAACT-GAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAG
* * *
50372 GCACCATAGACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGG-
191 GCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGC
* * * * *
50436 TTTTTTCCCCCCAATTTTTTTAAAGTTTGACTTCGTGCCTCAAATGAAACAAACATGGATTCCAG
256 TTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
*
50501 TAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTTTTCACATTAGGATAAAGGAT
321 TAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGAT
* *
50566 AATGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAT
386 AATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAT
* *
50631 CCCTTAAATAGGGA-AAGCATCGAGT
451 CCCTTAAATA-AGACAAGCATCGATT
* * * * * *
50656 CTAGTAATAGTCTCCATTATTTTCATGATTGGGAACCAAAAACACA-TTCTTTTCTTTAGGATAC
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTC-CTTCATTAGGATAC
* ** * * * *
50720 ATAATGTTGATGCTTTGGTAAAGCAAAAAAAAGCTTTTCTTAGCACCGTTTTTGATAGAATCAAA
65 ATGACATTGATGCTATGGTGACGC-AAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAA
* * * * * * * ** * *
50785 GTTTGTCACTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCATTTCAGGATTAGAC
129 GTTTGTCTCTTAAATAAGACAAACT-GAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGC
* * * ** *
50850 ACCACAAACATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTAAAAAAAAGGCTT
193 ACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTT
* * * *
50915 TCTTCCC-CCTAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAAACAAATATTGATTCTAGT
258 TTTTCCCACC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * * * * * *
50979 AATGATCTTCATTCATTTTGGGATTAGACACTATAAACACCTTCTCCTCATTAAGATAAATGTTA
322 AATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATA
* * * *
51044 TTGATGATTTTCTGTTGCATGGAAATCTTTTGTTTGCCTTATTTACCTTAAAAACAAAGTTCATC
387 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
*
51109 CCTTAAATAAGGCAAGCATCGAGGCACGTAAT
452 CCTTAAATAAGACAAGCATC---G-A--T--T
* *
51141 AAGGCATC-TACTAAAGTTTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTA
1 ----C-TCGTA--ACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTA
* * * * * * *
51205 GGGTACATGACACTGATGATATGGTGATGCAGAGAAAGCTTTTTCTTTCCACCGTTTTTGATAGA
59 GGATACATGACATTGATGCTATGGTGACGCAAAAAAAGC-TTTTCTTACCACCGTTTTTGATAGA
51270 ATCAACA-TTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTA-TTTTTTCAAG
123 ATCAA-AGTTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAG
** * *
51333 ATTAGGCATAATAAACATAGTCTTCTCATAGGGATACACTATATTGATGCTTTGGTTTCGCAAGA
186 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGA
* *
51398 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTTACTTCGTGCCTTAAATGAGACAAACATGGAT
251 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
51463 TCTAGTAATGACCTTTATTCATTTTGTGATTAGGCATTATAAGCACATTCTTCACATGACGATAA
316 TCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAA
*
51528 AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTATTTACCTTAAAATCAAAG
381 AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* *
51593 TTCATCTCTTAAATAAGACAAGCATCGATC
446 TTCATCCCTTAAATAAGACAAGCATCGATT
* * * * * *
51623 CTTGTAACAATTTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGACACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * *
51688 AGACATTGATGTTATGGTGACGCAAAAAAAGCTTTTCTTACTACCGTTTTTGATAGAATCAAAAT
66 TGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
* * *
51753 TTATCTCTTAAATAAGACAAACGTGAAGAGTCATACTAATTCCAATTTTTTTCAAGATTAGGCAC
131 TTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCAC
* * ***
51818 CAAAAACATAGTCTTCTCATAAGGATACACTATATTGATTCTTTGGTTTCATAAGAAAGGCTTTT
195 CATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTT
** * * *
51883 TTTGCACCAAGTTTTGCAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
260 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
51948 GACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATGATG
325 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * * *
52013 ATGATTTTCTTTTGCATTGAAATCATCTCTTTGCCATATTTACCTTAAAATCAAAGTTCACCCCT
390 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
52078 TAAATAAGACAAGCATCGATT
455 TAAATAAGACAAGCATCGATT
* * * * *
52099 CTCGTAACAGTCTCCATTCTTTTCGAGATTGAGAACCAATATCACATTTCCTTGATTAGGATACA
1 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
* * * *
52164 TGACATTGATGCTATGGTGATGCAGAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAATGT
66 TGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
* * *
52229 TTGTCTCTTAAATAAGACAAACGTGAAGAGTCATACTTATCCCTATGTTTTTCAAGATTAGGCGC
131 TTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCAC
* * * * * * * *
52294 CATAAACATAGTCTTCGCATAATGACATATTATATTGATGCTTTGGCTTCGCAAGAAAAGCTTTT
195 CATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTT
* * * * * *
52359 TTCCCACCAAGTTTTGTAAAGTCTAACTTCATGCCTCAATTGAGACAAACATGTATTATAGTAAT
260 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
52424 GATCTACACTCTTTTTGTGATTAGGCACTATAAACACATTCTT
325 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT
52467 TACAAGCATT
Statistics
Matches: 6880, Mismatches: 999, Indels: 299
0.84 0.12 0.04
Matches are distributed among these distances:
472 1 0.00
473 22 0.00
474 966 0.14
475 1936 0.28
476 1856 0.27
477 695 0.10
478 186 0.03
479 4 0.00
480 4 0.00
481 4 0.00
483 1 0.00
484 2 0.00
485 4 0.00
486 1 0.00
487 2 0.00
488 4 0.00
489 13 0.00
490 453 0.07
491 326 0.05
492 5 0.00
493 3 0.00
494 2 0.00
495 1 0.00
496 1 0.00
498 82 0.01
499 266 0.04
500 40 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (475 bp):
CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACA
TGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAACTGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCACC
ATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTT
TCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT
AAATAAGACAAGCATCGATT
Found at i:52828 original size:381 final size:382
Alignment explanation
Indices: 52158--52847 Score: 926
Period size: 381 Copynumber: 1.8 Consensus size: 382
52148 CCTTGATTAG
* * * **
52158 GATACATGACATTGATGCTATGGTGATGCAGAAAAAGCTTTTCTTACCACTGTTTTTGATAGAAT
1 GATACATGACATTAATGCTATAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAAT
* * *
52223 CAATGTTTGTCTCTTAAATAAGACAAACGTGAAGAGTCATACTTATCCCTATGTTTTTCAAGATT
66 CAAAGTTTGTCTCTTAAATAAGACAAACGTGAAGAGTCATACTAATCCCTATGTTTTCCAAGATT
* * ** *
52288 AGGCGCCATAAACATAGTCTTCGCATAATGACATATTATATTGATGCTTTGGCTTCGCAAGAAAA
131 AGGCACCATAAACATAGTCTTCGCATAATGACACACGATATTGATGCTTTGGCTTCGAAAGAAAA
* * * * * * * *
52353 GCTTTTTTCCCACCAAGTTTTGTAAAGTCTAACTTCATGCCTCAATTGAGACAAACATGTATTAT
196 GCTTTCTTCCCACCAAGTTTTGAAAAGTCGAACTTCATGCCTCAAATAAGACAAACACGGATCAT
*
52418 AGTAATGATCTACACTCTTTTTGTGATTAGGCACTATAAACACATTCTTTACAAGCATTGATTCT
261 AGTAATGACCTACACTCTTTTTGTGATTAGGCACTATAAACACATTCTTTACAAGCATTGATTCT
52483 CATAACTGCCAATATTCTTTTCAAGAAAAGGAGCCAAACACACATTCTCTTTATTCA
326 CATAACTGCCAATATTCTTTTCAAGAAAAGGAGCCAAACACACATTCTCTTTATTCA
* *
52540 GATACATGACATTAATGCTTTAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTTATAGAAT
1 GATACATGACATTAATGCTATAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAAT
* *
52605 CAAAGTTTGTCTCTTAAATAAGA-GAAC-TAGAATAGTCATACTAATCCCTAT-TCTTTCCAAGA
66 CAAAGTTTGTCTCTTAAATAAGACAAACGT-GAAGAGTCATACTAATCCCTATGT-TTTCCAAGA
** * * *
52667 TTTA-GCACCATAAACATAGTCTTTTCAT-ATGGATACACGATATTGATGCTTTGGTTTTGAAAG
129 -TTAGGCACCATAAACATAGTCTTCGCATAAT-GACACACGATATTGATGCTTTGGCTTCGAAAG
* * * *
52730 AAATA-CTTTCTTCCCCCCAATTTTTGAAAAGTCGGACTTCATGCCTCAAATAAGACAAACCCGG
192 AAA-AGCTTTCTTCCCACCAAGTTTTGAAAAGTCGAACTTCATGCCTCAAATAAGACAAACACGG
* ** *
52794 ATCCTAGTAATGACCTTTATTCATTTTT-TGATTAGGCACTATAAACACATTCTT
256 ATCATAGTAATGACCTACACTC-TTTTTGTGATTAGGCACTATAAACACATTCTT
52848 CACATGAGGA
Statistics
Matches: 263, Mismatches: 39, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
380 4 0.02
381 170 0.65
382 89 0.34
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (382 bp):
GATACATGACATTAATGCTATAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAAT
CAAAGTTTGTCTCTTAAATAAGACAAACGTGAAGAGTCATACTAATCCCTATGTTTTCCAAGATT
AGGCACCATAAACATAGTCTTCGCATAATGACACACGATATTGATGCTTTGGCTTCGAAAGAAAA
GCTTTCTTCCCACCAAGTTTTGAAAAGTCGAACTTCATGCCTCAAATAAGACAAACACGGATCAT
AGTAATGACCTACACTCTTTTTGTGATTAGGCACTATAAACACATTCTTTACAAGCATTGATTCT
CATAACTGCCAATATTCTTTTCAAGAAAAGGAGCCAAACACACATTCTCTTTATTCA
Found at i:55803 original size:476 final size:476
Alignment explanation
Indices: 52496--56195 Score: 4695
Period size: 476 Copynumber: 7.7 Consensus size: 476
52486 AACTGCCAAT
*** * * *
52496 ATTCTTTTCAAGAAAAGGAGCCAAACACACATTCTCTTT-ATTCA-GATACATGACATTAATGCT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTC-CTTTCATT-AGGATACATGACATTGATGCT
* * * *
52559 TTAGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAAT
64 TTGGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
*
52624 AAGAG-AACTAGAATAGTCATACTAATCCCTATTCTTTCCAAGATTTA-GCACCATAAACATAGT
129 AAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAAGA-TTAGGCACCATAAACATAGT
* * *
52687 CTTTTCATATGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAT-ACTTTCTTCCCCCCAAT
193 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG-AATGGCTTTCTTCCCCCCAAT
* * * * * ** * *
52751 TTTTGAAAAGTCGGACTTCATGCCTCAAATAAGACAAACCCGGATCCTAGTAATGACCTTTATTC
257 TTTTGTAAAGTCTGACTACGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
* *
52816 ATTTTTTGATTAGGCACTATAAACACATTCTTCACATGAGGATAAAGGATAATGATGATTTTCTT
322 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
52881 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
387 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * *
52946 AGGATTGATCCTCGTAATAGTTCCC
452 AGCATCGATCCTCGTAACAGTTCCC
* * * *
52971 AATCTTTTCAAAATTAGGAACCAAAAACACATTCCTTTCATTAGGATACGTGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * *
53036 GGTAATGCAAAAAAAGCTTTTCTCACCACCGTTTTTCAAAGAATCAAAG-TT-TATCTTAAATAA
66 GGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * * *
53099 GAGAAACTAGAATGGTTAAACTAATTCCT-TTTTTTTTAAGATTAGGCACCATAAACGTAGTCTT
131 GAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* * *
53163 CTCAGAAGGATACAAGATATTGATGCTTTGGTTTTGAAAGAAAT-ACTTTCTTCCCCCCAATTTT
196 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG-AATGGCTTTCTTCCCCCCAATTTT
* * * * * * *
53227 TGTAAAGTCAGAC-ATCATGCCTCAAATAAGACAAA-TTCGGATCCTAGTAGTGACCTTTATTCA
260 TGTAAAGTCTGACTA-CGTGCCTCAAATGAGACAAACAT-GGATTCTAGTAATGACCTTCATTCA
* **
53290 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGACAAAGGATAATGACAATTTTCTTT
323 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* * * * *
53355 TGCGTGGAAATCTTTTCCTTGCCTTATTTACATTAAAATCAAAGTTCATCCCTTAAATGAGATAA
388 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
53420 GCATCGATTCTCATAACAGTTCCC
453 GCATCGATCCTCGTAACAGTTCCC
** * * *
53444 ATTCTTTTCTTGATTGGGAACCAAAAACGCATTCCCTTCATTGGGATACATGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * *
53509 GGTGATGCAAAAAATGCTTTTATTACCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAA
66 GGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * * *
53574 GACAAACGT-GAAGAGTCAAACTAATCCCTATTTTTTTTCAAGATCAGGGACCATAAACGTAGTC
131 GAGAAAC-TAGAATAGTCATACTAATCCCTA-TTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * *
53638 CTCTCATAAGGATACACGATCTTGATGCTTTGGTTTTGAAAGAAAT-GCTTTCTACCCCCCAATT
194 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG-AATGGCTTTCTTCCCCCCAATT
* * * * * *
53702 TTTTTAAAGTCGGACTTCGTGCCTCAAATGAGACAAACCTGGATCCTAGTAATGACCTTTATTCA
258 TTTGTAAAGTCTGACTACGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
*
53767 TTTTGTGATTAGGTACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
323 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* *
53832 TGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAA
388 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
53897 GCATCGATGCTCATAACAGTTCCC
453 GCATCGATCCTCGTAACAGTTCCC
* * * * *
53921 ATTCTTTTCTAGATTCGGAACCAAAAACGCATTCCCTTCATTGGGATACATGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* * * * * *
53986 GGTGACGCAAAAAATGCTTTTATTACCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
66 GGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * *
54051 GACAAACGT-GAAGAGTCAAACTAATCCCTATTTTTTTCAAGATCAGGCACCATTAACATAGTCT
131 GAGAAAC-TAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* ** * * * *
54115 TCTCATAAGGATACACTATATTGACACTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT
195 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAATGGCTTTCTTCCCCCCAATTTT
*
54180 TGTAAAGTCTGACTCCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCACAAAAT
260 TGTAAAGTCTGACTACGTGCCTCAAATGAGACAAAC----A---T-G----G-----------AT
* *
54245 TCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACGCATTCTTCACATTAAGATAA
302 TCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* * **
54310 AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTTTATTTGCCTTAAAAAAAAAG
367 AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * ** * *
54375 TTCATCGCTTAAATAAGATAAGCATTAATTCTCGTAATAGTTCCC
432 TTCATCCCTTAAATAAGACAAGCATCGATCCTCGTAACAGTTCCC
* * *
54420 ATTCCTTTCAAGATTGGGAACTAAAAACACATTCCTTTCATTAGGATACACGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* *
54485 GGTAATGC-AAAAAAGCTTTTCTCA-CATCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
66 GGTAATGCAAAAAAAGCTTTTCTTACCA-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * * **
54548 AAAGAAGCTAGAATAGTCATACTAATCCTTGTTCTTTTCAGGATAAGGCTCCATAAATGTAGTCT
130 AGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * * *
54613 TCTCATAAGGATGCACGATATTGATGATTTGGTATTGAAAGAAAGGGTTTCTTCCCCCTAATTTT
195 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAATGGCTTTCTTCCCCCCAATTTT
* * * *
54678 TGTAAAGTCTAACTACGTGGCTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATT
260 TGTAAAGTCTGACTACGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATT
54743 TTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
325 TTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
* * * * * *
54808 CCTGAAAATGTTTTCTTTGCCTTCTTTACCTTAAAACCAAAGTTCATCCCTTAAATAAGGCAAGC
390 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
54873 ATCGAGCCTAGTAATAG-TCTCC
455 ATCGATCCTCGTAACAGTTC-CC
* * *
54895 ATTCTTTTCATGATTAGGAACCAAAAACACATTTCC-TTCATTAGGATACATGACATTGATGCTA
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTT
* * * * *
54959 TGGTAACGCAAAAAAAGCTTTTCTTACCACCATTTTTGGTAGAATCAATGTTTGTCTCATAAATA
65 TGGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
55024 AGACATAC-ATGAAGAGTCATACTAAT-CCTATTTTTTTTCAAGATTAGGCACCATAAACATAGT
130 AGAGAAACTA-GAATAGTCATACTAATCCCTA-TTCTTTTCAAGATTAGGCACCATAAACATAGT
* * * *
55087 CTTCTCATAAGGATACAC--TATTAGACGCTTTGGTTTCGCAAGAGA-GGCTATT-TTCCCGCCA
193 CTTCTCATAAGGATACACGATATT-GATGCTTTGGTTTTGAAAGA-ATGGCT-TTCTTCCCCCCA
*
55148 ATTTTTGTAAAATCTGAC-ATCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCA
255 ATTTTTGTAAAGTCTGACTA-CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCA
* **
55212 TTTATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAACAATGATTTT
319 TTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTT
* * *
55277 CTTTTACATGGAAAT-TTTCTCTTTGCCATATTTACCTTAAAATCAAAGTTCATCCCTTCAATAA
384 CTTTTGCATGGAAATCTTT-TCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
55341 GACAAACATCGATTCTCGTAACA-ATCACC
448 GACAAGCATCGATCCTCGTAACAGTTC-CC
* * *
55370 ATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTTTCATTAGGATATAAGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
* *
55435 GGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAA
66 GGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * * *
55500 GAGAAGCTAGAATAGCCATACTAAACCATATTCTTTTCAGGATTAGACACCACAAACATAGTCTT
131 GAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* *
55565 CTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAATGGCTTTCTTCCCCCTAATTTTT
196 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAATGGCTTTCTTCCCCCCAATTTTT
* * * *
55630 GTAAAGTCTAACTACGTGACTCAAATGAGACAAACATGGATTCTAGTAGTGATCTTCATTCATTT
261 GTAAAGTCTGACTACGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTT
* * * ** * *
55695 TGTGATTTGGCACTACAAACACATTCTCCACATTAATATAAAATG-TAAGGATGATTTTCTTTTG
326 TGTGATTAGGCACTATAAACACATTCTTCACATTAGGAT-AAAGGATAATGATGATTTTCTTTTG
* *
55759 CATGGAAATCTTTTCTTTACCTTATTTACCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGC
390 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
55824 ATCGATCCTCGTAACAGTTCCC
455 ATCGATCCTCGTAACAGTTCCC
55846 ATTCTTTTCAAGATTGGGAACCAAAAACACATT-CTCTTCATTAGGATACATGACATTGATGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT-TTCATTAGGATACATGACATTGATGCTT
*
55910 TGGTAATGCAAAAAAAGCTTTTGTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
65 TGGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * *
55975 AGAGAAGCTAGAATAGCCATACTAAACCATGTTCTTTTCAGGATTAGGCACCACAAACATAGTCT
130 AGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * *
56040 TCTCATAAGGATGCACGATATTAATGCTTTGTTTTTGAAAGAATGGCTTTCTTCCCCCCAATTTT
195 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAATGGCTTTCTTCCCCCCAATTTT
* * * *
56105 CGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGACCTTCTTTCATT
260 TGTAAAGTCTGACTACGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATT
56170 TTGTGATTAGGCACTATAAACACATT
325 TTGTGATTAGGCACTATAAACACATT
56196 ATTCCCAAGC
Statistics
Matches: 2833, Mismatches: 329, Indels: 125
0.86 0.10 0.04
Matches are distributed among these distances:
472 3 0.00
473 394 0.14
474 44 0.02
475 742 0.26
476 776 0.27
477 459 0.16
478 1 0.00
483 1 0.00
484 1 0.00
486 1 0.00
488 1 0.00
490 1 0.00
491 1 0.00
494 1 0.00
497 3 0.00
498 182 0.06
499 222 0.08
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34
Consensus pattern (476 bp):
ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
GGTAATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
GAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
CTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAATGGCTTTCTTCCCCCCAATTTTT
GTAAAGTCTGACTACGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTT
TGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
TCGATCCTCGTAACAGTTCCC
Found at i:57360 original size:476 final size:474
Alignment explanation
Indices: 56313--58817 Score: 3118
Period size: 476 Copynumber: 5.3 Consensus size: 474
56303 AAAAGCTTTT
* * *
56313 TAAACAC-TTTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTT
1 TAAACACATTT-TCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTC
* * * * * *
56377 TTTGCCTTATTTACATTAAAATCAAATTTCATCCCTTAAATAAGACAAGCATAGATTCTCGCAAC
65 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCGTAAT
* * * *
56442 AGT-TCCCATTCTTTTCAAGATTGGGAACCAAAAACGCATTCCCTTCGTTAGGGTACTTGACATT
130 AGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * *
56506 GATGCTTTGGTGATGCAAAAAAATCTTTTCTTTCCACCGTGTTTAATAGAATCAAAGTTTGTCTC
194 GATGCTATGGTG-TGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * * * *
56571 TTAAATAAGAGAAGCTAGAATAGTCATACTAA-ACCT-TGTTCTTTTCAGGATTGGGCACCATAA
258 TCAAATAAGAGAAACT-GAAGAGTCATGCTAATCCCTAT-TTCTTTTCAAGATTAGGCACCATAA
** * * * *
56634 ATGTAGTCTTCTCATAATGATGCACAATATTGATGCTTT-G----AAAGAAATGCTTTCTTCCCC
321 ACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAAGAAAGGCTTTCTTCCCC
** ** * * *
56694 CCAATTTTTGTATGGTCTGACTTCAAGCCTTAAATGAGACAAACCTGGATTCAAGTAATGATCTT
386 CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* *
56759 CATTCATTTTGAGATTAGACACTA
451 CATTCATTTTGTGATTAGGCACTA
* ** * * * * ** *
56783 TAAACACCTTCACCTCATTCGGATAAATGTTCTTGACGATTTTCTTTTGCATGAAAATCTTTTCT
1 TAAACACATTTTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * *
56848 TTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGAGGCTTGTAATA
66 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCGTAATA
* * * * * *
56913 GTCTCCATTCTCTTCAAGATTTGGAACCAAAAACACATTTCCTTCATTAGTATACCTAACATTGA
131 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* *
56978 TGCTATGGTGTCGTAGAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAACA-TTTGTCTCT
196 TGCTATGGTGT-GCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAA-AGTTTGTCTCT
* *
57042 CAAATAAGGGAAACATGAAGAGTCATGCTAATCCCTATTTTTTTTCAAGATTAGGCACCATAAAC
259 CAAATAAGAGAAAC-TGAAGAGTCATGCTAATCCCTATTTCTTTTCAAGATTAGGCACCATAAAC
*
57107 ATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAACGAAAGGCTTTCTTCCCCC
323 ATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAA-GAAAGGCTTTCTTCCCCC
* * *
57172 CAATTTTTGTAAAGTCTG-CTTCGTGCCTCTAATGAGGCAAACATTGATTCTAGTAATGATCTTC
387 CAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
57236 ATTCATTTTGTGATTAGGCACTA
452 ATTCATTTTGTGATTAGGCACTA
* ** *
57259 TAAACACGTTTTCCACATTAATATAAAGTG-TAAGGATGATTTTCTTTTGCATGAAAATCTTTTC
1 TAAACACATTTTCCACATTAGGATAAAG-GATAATGATGATTTTCTTTTGCATGAAAATCTTTTC
* *
57323 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATCCTCGTAAC
65 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCGTAAT
57388 AG-CTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
130 AGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * *
57452 GATGCTTTGGTAATGCAAAAAAAG-TTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTGTC
194 GATGCTATGGT-GTGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * * * * * * * *
57516 TTAAATAAAAGAAGCTAGAATAGCCATACTAA-ACCT-TGTTCTTTTCAGGGTTAGGCCCCACAA
258 TCAAATAAGAGAAACT-GAAGAGTCATGCTAATCCCTAT-TTCTTTTCAAGATTAGGCACCATAA
* * * * *
57579 ACATAGTCTTCGCATAAGGATGCACGATATTGACGCTTTAGTTTTGAAAGAAAGGCTTTCTTCCC
321 ACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG-AAGAAAGGCTTTCTTCCC
* *
57644 CCCAATTTTTGTAAATTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCT
385 CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* * * *
57709 TCATTTATTTTGAGATTAGACACCA
450 TCATTCATTTTGTGATTAGGCACTA
* * * * * * ** ** *
57734 TAAACACCTTCTCCTCTTTAGGATAAATGTTCTTGATGATTTTCTTTTGTGTGAAAATCTATTCT
1 TAAACACATTTTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * * *
57799 TTGCCCTATTTACCTTAAAATCAAAATTCATCCCTTACATAAGGCAAGCATCGAGGCTCGTAATA
66 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCGTAATA
* * * *
57864 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCGTTAGTATACCTGACATTGA
131 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
57929 TGCTATGGTGACGTAGAAAAAGCTTTTCTTACCACCAG-TTTTGATAGAATCAACGTTTGTCTCT
196 TGCTATGGTG-TGCAAAAAAAGCTTTTCTTACCACC-GTTTTTGATAGAATCAAAGTTTGTCTCT
*
57993 CAAATAAG-GCAAACGTGAAGAGTCATGCTAATCCCTA-TTGTTTTCAAGATTAGGCACCATAAA
259 CAAATAAGAG-AAAC-TGAAGAGTCATGCTAATCCCTATTTCTTTTCAAGATTAGGCACCATAAA
* * *
58056 CATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCA
322 CATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG-AAGAAAGGCTTTCTTCCCC
* * * *
58121 CCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGAAATGACCTT
386 CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
58186 CATTCATTTTGTGATTAGGCACTA
451 CATTCATTTTGTGATTAGGCACTA
* ** *
58210 TAAACACATTCTTCC-CACTAGGATAAAGGATAATGATGATTTTCTTTCCCATGGAAATCTTTTC
1 TAAACACATT-TTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTC
* *
58274 GTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAT
65 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCGTAAT
* * *
58339 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATCAAGATGCATGACATTG
130 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* *
58404 TTGCT-TCGGTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTC
195 ATGCTAT-GGTG-TGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * *
58468 -CTAAATAAGACAAACATGAAGTGTCATGCTAATCCCTA-TTCTTCTCAAGATTTGGCACCATAA
258 TC-AAATAAGAGAAAC-TGAAGAGTCATGCTAATCCCTATTTCTTTTCAAGATTAGGCACCATAA
* * * * * * *
58531 ACATAGTCTTCTCATATGAATACAAAATATTGATGCTTTGGTCTCGTAAGAAAGACTTTTTTCCC
321 ACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG-AAGAAAGGCTTTCTTCCC
* * * *
58596 ACCAATTTTCGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGACCT
385 CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
58661 TCATTCATTTTGTGATTAGGCACTA
450 TCATTCATTTTGTGATTAGGCACTA
* *
58686 TAAACACATTCTT-CACATTAGGATAAAGGATAGTGATGATTTT-TTTTGCACGAAAATCTTTTC
1 TAAACACATT-TTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTC
* * * *
58749 ATTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATAGATTCTCGTAAT
65 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCGTAAT
58814 -GTCT
130 AGTCT
58818 AACTTCTTGC
Statistics
Matches: 1756, Mismatches: 243, Indels: 68
0.85 0.12 0.03
Matches are distributed among these distances:
469 1 0.00
470 236 0.13
471 64 0.04
472 2 0.00
473 1 0.00
474 106 0.06
475 392 0.22
476 911 0.52
477 43 0.02
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (474 bp):
TAAACACATTTTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCT
TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATGCTCGTAATA
GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
TGCTATGGTGTGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCA
AATAAGAGAAACTGAAGAGTCATGCTAATCCCTATTTCTTTTCAAGATTAGGCACCATAAACATA
GTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAAGAAAGGCTTTCTTCCCCCCAAT
TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
ATTTTGTGATTAGGCACTA
Found at i:58813 original size:951 final size:948
Alignment explanation
Indices: 56313--58792 Score: 3651
Period size: 951 Copynumber: 2.6 Consensus size: 948
56303 AAAAGCTTTT
* * *
56313 TAAACACTTTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTTT
1 TAAACACATTCTTCCCATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *
56378 TTGCCTTATTTACATTAAAATCAAATTTCATCCCTTAAATAAGACAAGCATAGATTCTCGCAACA
66 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * *
56443 GT-TCCCATTCTTTTCAAGATTGGGAACCAAAAACGCATTCCCTTCGTTAGGGTACTTGACATTG
131 GTCTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
56507 ATGCTTTGGTGATGCAAAAAAAT-CTTTTCTTTCCACCGTGTTTAATAGAATCAAAGTTTGTCTC
196 ATGCTTTGGTGATGC-AAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* *
56571 TTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTGGGCACCATAAAT
260 TTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAAC
*
56636 GTAGTCTTCTCATAATGATGCACAATATTGATGC--T-TTGAAAGAAATGCTTTCTTCCCCCCAA
325 ATAGTCTTCTCAT-ATGATGCACAATATTGATGCTTTGTTGAAAGAAA-GCTTTCTTCCCCCCAA
** ** * *
56698 TTTTTGTATGGTCTGACTTCAAGCCTTAAATGAGACAAACCTGGATTCAAGTAATGATCTTCATT
388 TTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGATCTTCATT
* * *
56763 CATTTTGAGATTAGACACTATAAACACCTTCACCTCATTCGGATAAATGTTCTTGACGATTTTCT
453 CATTTTGAGATTAGACACTATAAACACCTTCTCCTCATTAGGATAAATGTTCTTGATGATTTTCT
56828 TTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
518 TTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
* *
56893 AAGCATCGAGGCTTGTAATAGTCTCCATTCTCTTCAAGATTTGGAACCAAAAACACATTTCCTTC
583 AAGCATCGAGGCTCGTAATAGTCTCCATTCTCTTCAAGATTGGGAACCAAAAACACATTTCCTTC
*
56958 ATTAGTATACCTAACATTGATGCTATGGTGTCGTAGAAAAAGCTTTTCTTACCACCGTTTTTGAT
648 ATTAGTATACCTAACATTGATGCTATGGTGACGTAGAAAAAGCTTTTCTTACCACCGTTTTTGAT
* *
57023 AGAATCAACATTTGTCTCTCAAATAAGGGAAACATGAAGAGTCATGCTAATCCCTATTTTTTTTC
713 AGAATCAACATTTGTCTCTCAAATAAGGCAAACATGAAGAGTCATGCTAATCCCTATTTGTTTTC
57088 AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAA
778 AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAA
* * * * * *
57153 CGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGCTTCGTGCCTCTAATGAGGCAAACATTG
843 CGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTACTTCATGCCTCAAATGAGACAAACATGG
* *
57218 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
908 ATTCTAGAAATGACCTTCATTCATTTTGTGATTAGGCACTA
* ** * *
57259 TAAACACGTT-TTCCACATTAATATAAAGTG-TAAGGATGATTTTCTTTTGCATGAAAATCTTTT
1 TAAACACATTCTTCC-CATTAGGATAAAG-GATAATGATGATTTTCTTTTGCATGGAAATCTTTT
*
57322 CTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATCCTCGTAA
64 CTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
57387 CAG-CTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
129 CAGTCTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * *
57451 TGATGCTTTGGTAATGCAAAAAAAG-TTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTGT
194 TGATGCTTTGGTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * * * *
57515 CTTAAATAAAAGAAGCTAGAATAGCCATACTAAACCTTGTTCTTTTCAGGGTTAGGCCCCACAAA
259 CTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAA
* * * *
57580 CATAGTCTTCGCATAAGGATGCACGATATTGACGCTTTAGTTTTGAAAGAAAGGCTTTCTTCCCC
324 CATAGTCTTCTCAT-ATGATGCACAATATTGATGCTTT-G--TTGAAAGAAA-GCTTTCTTCCCC
* * *
57645 CCAATTTTTGTAAATTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTT
384 CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGATCTT
* * *
57710 CATTTATTTTGAGATTAGACACCATAAACACCTTCTCCTCTTTAGGATAAATGTTCTTGATGATT
449 CATTCATTTTGAGATTAGACACTATAAACACCTTCTCCTCATTAGGATAAATGTTCTTGATGATT
** * * *
57775 TTCTTTTGTGTGAAAATCTATTCTTTGCCCTATTTACCTTAAAATCAAAATTCATCCCTTACATA
514 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA
*
57840 AGGCAAGCATCGAGGCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTC
579 AGGCAAGCATCGAGGCTCGTAATAGTCTCCATTCTCTTCAAGATTGGGAACCAAAAACACATTTC
* *
57905 CTTCGTTAGTATACCTGACATTGATGCTATGGTGACGTAGAAAAAGCTTTTCTTACCACCAG-TT
644 CTTCATTAGTATACCTAACATTGATGCTATGGTGACGTAGAAAAAGCTTTTCTTACCACC-GTTT
* *
57969 TTGATAGAATCAACGTTTGTCTCTCAAATAAGGCAAACGTGAAGAGTCATGCTAATCCCTA-TTG
708 TTGATAGAATCAACATTTGTCTCTCAAATAAGGCAAACATGAAGAGTCATGCTAATCCCTATTTG
58033 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTT
773 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTT
*
58098 TTGCAA-GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACA
838 TTG-AACGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT-ACTTCATGCCTCAAATGAGACA
58162 AACATGGATTCTAGAAATGACCTTCATTCATTTTGTGATTAGGCACTA
901 AACATGGATTCTAGAAATGACCTTCATTCATTTTGTGATTAGGCACTA
* ** *
58210 TAAACACATTCTTCCCACTAGGATAAAGGATAATGATGATTTTCTTTCCCATGGAAATCTTTTCG
1 TAAACACATTCTTCCCATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCT
*
58275 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATA
66 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * *
58340 GTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATCAAGATGCATGACATTG
131 GTCTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
58404 TTGCTTCGGTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCC
196 ATGCTTTGGTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * * * * * * *
58469 TAAATAAGACAAAC-ATGAAGT-GTCATGCTAATCCCTATTCTTCTCAAGATTTGGCACCATAAA
261 TAAATAAGAGAAGCTA-GAA-TAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAA
* * * * *
58532 CATAGTCTTCTCATATGAATACAAAATATTGATGCTTTGGTCTCGTAAGAAAGACTTTTTTCCCA
324 CATAGTCTTCTCATATG-ATGCACAATATTGATGCTTT-GT-T-GAAAGAAAG-CTTTCTTCCCC
* *
58597 CCAATTTTCGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGACCTT
384 CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGATCTT
* * * * * * * **
58662 CATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAGTGATGATT
449 CATTCATTTTGAGATTAGACACTATAAACACCTTCTCCTCATTAGGATAAATGTTCTTGATGATT
* * *
58727 TT-TTTTGCACGAAAATCTTTTCATTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA
514 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA
58791 AG
579 AG
58793 ATAAGCATAG
Statistics
Matches: 1368, Mismatches: 143, Indels: 41
0.88 0.09 0.03
Matches are distributed among these distances:
945 132 0.10
946 185 0.14
947 2 0.00
950 105 0.08
951 691 0.51
952 252 0.18
953 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (948 bp):
TAAACACATTCTTCCCATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCT
TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
GTCTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
ATGCTTTGGTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACA
TAGTCTTCTCATATGATGCACAATATTGATGCTTTGTTGAAAGAAAGCTTTCTTCCCCCCAATTT
TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGATCTTCATTCAT
TTTGAGATTAGACACTATAAACACCTTCTCCTCATTAGGATAAATGTTCTTGATGATTTTCTTTT
GCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
CATCGAGGCTCGTAATAGTCTCCATTCTCTTCAAGATTGGGAACCAAAAACACATTTCCTTCATT
AGTATACCTAACATTGATGCTATGGTGACGTAGAAAAAGCTTTTCTTACCACCGTTTTTGATAGA
ATCAACATTTGTCTCTCAAATAAGGCAAACATGAAGAGTCATGCTAATCCCTATTTGTTTTCAAG
ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGAACGA
AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTACTTCATGCCTCAAATGAGACAAACATGGATT
CTAGAAATGACCTTCATTCATTTTGTGATTAGGCACTA
Found at i:59447 original size:679 final size:679
Alignment explanation
Indices: 58130--59487 Score: 1899
Period size: 679 Copynumber: 2.0 Consensus size: 679
58120 ACCAATTTTT
58130 GTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTT
1 GTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTT
* * *
58195 TGTGATTAGGCACTATAAACACATTCTTCCCACTAGGATAAAGGATAATGATGATTTTCTTTCCC
66 TGAGATTAGACACTATAAACACATTCTACCCACTAGGATAAAGGATAATGATGATTTTCTTTCCC
*
58260 ATGGAAATCTTTTCGTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
131 ATGGAAATCTTTTCGTTACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * *
58325 TCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATCAA
196 TCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCATCAA
* * ** * * *
58390 GATGCATGACATTGTTGCTTCGGTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAAT
261 GATACAAGACATTAATGCTTCGGTAATGCAAAAAAAGCTTTTCTTACCACCGATTTTGATAGAAT
* * * *
58455 CAAAGTTTGTCTCCTAAATAAGACAAACATGAAGTGTCATGCTAATCCCTATTCTTCTCAAGATT
326 CAAAGTTTGCCTCCTAAATAAGACAAACATGAAGAGTCATGCTAATCCCAATTCTTCTCAAGATA
* * * *
58520 TGGCACCATAAACATAGTCTTCTCATATGAATACAAAATATTGATGCTTTGGTCTCGTAAGAAAG
391 AGGCACCATAAACATAGTCTTCTCATAAGAATACAAAATATTAATGCTTTGGTCTCGCAAGAAAG
* * * * *
58585 ACTTTTTTCCCACCAATTTTCGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACCTGGATTCT
456 ACTTTCTTCCCACCAATTTTCGTAAAGTCTAACTACCTGCCTCAAATGAGACAAACATGGATTCT
58650 AGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
521 AGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* * *
58715 ATAGTGATGATTTTTTTTGCACGAAAATCTTTTCATTGCCTTATTTACCTTAAAATCA-AAGTTC
586 ATAATGATGATTTTTTTTGCACGAAAATCTTCTCATTGCCATATTTACCTTAAAATCACAA-TTC
*
58779 ATCCCTTAAATAAGATAAGCATAGATTCTC
650 ATCCCTTAAATAAGACAAGCATAGATTCTC
* * * * *
58809 GTAATGTCTAACTTCTTGCCTTAAATGAGACAAACCTGGATTCTA-ATAATGATCTTCATTCATT
1 GTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGA-AATGACCTTCATTCATT
* * * * *
58873 TTGAGATTAGACACTATAAACACCTTC-ACCTCATTAGGGTAAATGTTAATGATGATTTTCCTTT
65 TTGAGATTAGACACTATAAACACATTCTACC-CACTAGGATAAAGGATAATGATGATTTT-CTTT
* * * *
58937 -GCATGGAAATCTTTTCTTTACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGGCAA
128 CCCATGGAAATCTTTTCGTTACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
59001 GCATTGATTCTCTTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCAT
193 GCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCA-
* *
59066 TC-GGATACAAGACATTAATGCTTTGGTAATGCAAAAAAAGCTTTTCTTACCACC-ATTTTGATA
257 TCAAGATACAAGACATTAATGCTTCGGTAATGCAAAAAAAGCTTTTCTTACCACCGATTTTGATA
* * ** * *
59129 GAATCAAAGTTTGCCTCTTAAATTAGACAAATGTGAAGAGTCATGCTAATCCCAATTTTTTTCAA
322 GAATCAAAGTTTGCCTCCTAAATAAGACAAACATGAAGAGTCATGCTAATCCCAATTCTTCTCAA
* ** * *
59194 GATAAGGCACCATAAACATAGTCTTC-CTATAAGGATACACTATATTAATGCTTTGGTTTCGCAG
387 GATAAGGCACCATAAACATAGTCTTCTC-ATAAGAATACAAAATATTAATGCTTTGGTCTCGCAA
* * * *
59258 GAAAGGCTTTCTTCCC-CCTAATTTTTGTAAAGTCTAACTACCTAG-CTCAATTGAGGCAAACAT
451 GAAAGACTTTCTTCCCACC-AATTTTCGTAAAGTCTAACTACCT-GCCTCAAATGAGACAAACAT
*
59321 GGATTCTAGTATTGGA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAG
514 GGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAG
* * * * *
59385 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTCTCTTTGTCATATTTTCCTTAAAAT
578 GATAAAGGATAATGATGATTTT-TTTTGCACGAAAATCTTCTCATTGCCATATTTACCTTAAAAT
* * *
59450 CACAATTCATCTCTTAAATACGACAAGCATCGATTCTC
642 CACAATTCATCCCTTAAATAAGACAAGCATAGATTCTC
59488 ATTAGTGTCT
Statistics
Matches: 596, Mismatches: 73, Indels: 20
0.87 0.11 0.03
Matches are distributed among these distances:
677 3 0.01
678 249 0.42
679 336 0.56
680 8 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (679 bp):
GTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTT
TGAGATTAGACACTATAAACACATTCTACCCACTAGGATAAAGGATAATGATGATTTTCTTTCCC
ATGGAAATCTTTTCGTTACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
TCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCATCAA
GATACAAGACATTAATGCTTCGGTAATGCAAAAAAAGCTTTTCTTACCACCGATTTTGATAGAAT
CAAAGTTTGCCTCCTAAATAAGACAAACATGAAGAGTCATGCTAATCCCAATTCTTCTCAAGATA
AGGCACCATAAACATAGTCTTCTCATAAGAATACAAAATATTAATGCTTTGGTCTCGCAAGAAAG
ACTTTCTTCCCACCAATTTTCGTAAAGTCTAACTACCTGCCTCAAATGAGACAAACATGGATTCT
AGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
ATAATGATGATTTTTTTTGCACGAAAATCTTCTCATTGCCATATTTACCTTAAAATCACAATTCA
TCCCTTAAATAAGACAAGCATAGATTCTC
Found at i:59758 original size:475 final size:475
Alignment explanation
Indices: 58809--59837 Score: 1392
Period size: 475 Copynumber: 2.2 Consensus size: 475
58799 ATAGATTCTC
* * * * * * * *
58809 GTAATGTCTAACTTCTTGCCTTAAATGAGACAAACCTGGATTCTAATAATGATCTTCATTCATTT
1 GTAAAGTCTAACTACCTGCCTCAATTGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTT
* * * * * * *
58874 TGAGATTAGACACTATAAACACCTTCACCTCATTAGGGTAAATGTTAATGATGATTTTCCTTTGC
66 TGTGATTAGGCACTATAAACACATTCACCACATTAGGATAAAGGATAATGATGATTTTCCTTTGC
* * *
58939 ATGGAAATCTTTTCTTTACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGGCAAGCA
131 ATGGAAATCTTCTCTTTACCATATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAGCA
* *
59004 TTGATTCTCTTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTCG
196 TCGATTCTCTTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAG
59069 GATACAAGACATTAATGCTTTGGTAATGCAAAAAAAGCTTTTCTTACCACCATTTTGATAGAATC
261 GATACAAGACATTAATGCTTTGGTAATGCAAAAAAAGCTTTTCTTACCACCATTTTGATAGAATC
* ** * * *
59134 AAAGTTTGCCTCTTAAATTAGACAAATGTGAAGAGTCATGCTAATCCCAATTTTTTTCAAGATAA
326 AAAGTTTGCCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCAATTCTTTTCAACATAA
* *
59199 GGCACCATAAACATAGTCTTCCTATAAGGATACACTATATTAATGCTTTGGTTTCGCAGGAAAGG
391 GGCACCATAAACATAGTCTTACTATAAGGATACACTATATTAATGCTTTGGTTTCGCAAGAAAGG
59264 CTTTCTTCCCCCTAATTTTT
456 CTTTCTTCCCCCTAATTTTT
* *
59284 GTAAAGTCTAACTACCTAG-CTCAATTGAGGCAAACATGGATTCTAGTATTGGA-CTTCATTCAT
1 GTAAAGTCTAACTACCT-GCCTCAATTGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCAT
** *
59347 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
64 TTTGTGATTAGGCACTATAAACACATTCACCACATTAGGATAAAGGATAATGATGATTTTCCTTT
** * *
59412 GCATGGAAATCTTCTCTTTGTCATATTTTCCTTAAAATCACAA-TTCATCTCTTAAAT-ACGACA
129 GCATGGAAATCTTCTCTTTACCATATTTACCTTAAAATCA-AAGTTCATCCCTTAAATGA-GACA
** * *
59475 AGCATCGATTCTCATT-AGTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCTTC
192 AGCATCGATTCTC-TTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTC
* * * *
59538 ATTAGGATACAAGACATTGATGCTTTGGTGATGCATAAAAAGCTTTTCTTACCACCGTTTTTGAT
256 ATTAGGATACAAGACATTAATGCTTTGGTAATGCAAAAAAAGCTTTTCTTACCACC-ATTTTGAT
* * *
59603 AGAATCAAAGTTTGCTTCTTAAATAAGACAAACATGTAGAGTCATACTAATCCCTATTCTTTTCA
320 AGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCAATTCTTTTCA
** *
59668 ACATTTGGCACCATAAACATAGTCTTAC-ATAAGGATACA-TGATATTGATGCTTTGGTTTCGCA
385 ACATAAGGCACCATAAACATAGTCTTACTATAAGGATACACT-ATATTAATGCTTTGGTTTCGCA
*
59731 AGAAAGGCTTTTTTTCCCACC-AATTTTT
449 AGAAAGGC-TTTCTTCCC-CCTAATTTTT
* * * * *
59759 GTAAAGTCTAACTTCGTGCCTCAATTGTGACAAACATGGATTCTAGAAATGACCTTCATTCATAT
1 GTAAAGTCTAACTACCTGCCTCAATTGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTT
*
59824 TGTGCTTAGGCACT
66 TGTGATTAGGCACT
59838 GTGTTTTTCT
Statistics
Matches: 484, Mismatches: 59, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
473 1 0.00
474 100 0.21
475 374 0.77
476 9 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
GTAAAGTCTAACTACCTGCCTCAATTGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTT
TGTGATTAGGCACTATAAACACATTCACCACATTAGGATAAAGGATAATGATGATTTTCCTTTGC
ATGGAAATCTTCTCTTTACCATATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAGCA
TCGATTCTCTTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAG
GATACAAGACATTAATGCTTTGGTAATGCAAAAAAAGCTTTTCTTACCACCATTTTGATAGAATC
AAAGTTTGCCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCAATTCTTTTCAACATAA
GGCACCATAAACATAGTCTTACTATAAGGATACACTATATTAATGCTTTGGTTTCGCAAGAAAGG
CTTTCTTCCCCCTAATTTTT
Found at i:60383 original size:381 final size:382
Alignment explanation
Indices: 59472--61002 Score: 1759
Period size: 379 Copynumber: 4.0 Consensus size: 382
59462 CTTAAATACG
* * *
59472 ACAAGCATCGATTCTCATTAGTGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCT
1 ACAAGCATCGATTCTCATAACTGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCT
* * * *
59536 TCATTAGGATACAAGACATTGATGCTTTGGTGATGCATAAAAAGCTTTTCTTACCACCGTTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTG
*
59601 ATAGAATCAAAGTTTG-CTTCTTAAATAAGACAAACATGTAGAGTCATACTAATCCCTATTCTTT
131 ATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTT
* * * * *
59665 TCAACATTTGGCACCATAAACATAGTCTT-ACATAAGGATACATGATATTGATGCTTTGGTTTCG
195 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
* * * * * *
59729 CAAGAAAGGCTTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGTGACAAAC
260 AAAGAAAGGC-TTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAAC
* * * * ****
59794 ATGGATTCTAGAAATGACCTTCATTCATATTGTGCTTAGGCACTGT---GTTTTTCTTC
324 ATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
* * * *
59850 ACAAGCATCGATTCTTATAACTGTCTCCATTCTTTTCAGGAATGGGAACTAGAAACACATTCCCT
1 ACAAGCATCGATTCTCATAACTGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCT
* * * * *
59915 TCATTAGGATACATGACATTGATGTTTTGGCGGCACAAAAAAAGCTTTTCTTATCACCATTTTTG
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTG
* * * *
59980 ATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACCA-AAATAGTCATACTAATCCCTATTCTTT
131 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CATGAAGAGTCATACTAATCCCTATTCTTT
* * *
60044 TCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGATTTGGTTTTG
195 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
* * *
60109 AAAGAAATGCTTTCTTCCCCCCAATTTTCGTAAAGTCTGACTTCGTGCCTCAAATGAGATAAACA
260 AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA
* *
60174 TGGATTCTAGTAATGACCTTAATTCATTTTGTGA-TAGGCACTAAAAACACATTCTTC
325 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
*
60231 ACAAGCATCGATTCTCATAACTGTCTCCATTCTTTTCAGGATTGGAAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTCATAACTGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCT
* * *
60296 TCATTAGGATACATGACATTGACGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTA
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTG
60361 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTA-----TT
131 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTT
* * * * * * *
60421 GAGGATTAGGCACCATTAACGTAGTCTTCTCATAAGGATACACGAGATAGATGCTTTGCTTTTGA
196 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
* *
60486 AGGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGGGACAAACAT
261 AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
* *
60551 GGATTCTAGTAATAACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTC
326 GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
* * * * * ** ** ** *** * * *
60608 CCATTAGGATAATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCTTATT--TATCTT
1 ACA--A-G-----CAT--CGATTCTC-ATAAC-T-G-TCTCCATTCTTTTCAGGATTGGGAAC-C
* * * *
60671 AAAATCAAAGTTCATCCCTTCAGTAGGATACATGACATTGATGCTTTGGTGATGC-AAAAAAGCT
51 AAAAACACA--T--TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCT
* * * * * *
60735 TTTCTTGCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAATAGAAGC-TAGAATAGTC
112 TTTCTTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAGAGTC
* * * * * * * *
60799 ATGCTAGA-CCTTGTTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAGGGATGCACG
176 ATACTA-ATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* ** * *
60863 ACATTGATGCTTTGGTTTTGAAAGAAAGGCTTT-TTCAGCCTAATTTTTATAAAGTCTGACTTCG
240 ATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCG
* * *
60927 TGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTAT
305 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
60992 AAACACATTCT
370 AAACACATTCT
61003 CCGCATTAGG
Statistics
Matches: 987, Mismatches: 131, Indels: 51
0.84 0.11 0.04
Matches are distributed among these distances:
376 147 0.15
377 24 0.02
378 62 0.06
379 220 0.22
380 46 0.05
381 174 0.18
385 2 0.00
387 6 0.01
388 2 0.00
389 3 0.00
390 8 0.01
391 13 0.01
392 2 0.00
393 71 0.07
394 39 0.04
397 97 0.10
398 71 0.07
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (382 bp):
ACAAGCATCGATTCTCATAACTGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTT
CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
Found at i:62877 original size:476 final size:476
Alignment explanation
Indices: 61959--64034 Score: 2572
Period size: 476 Copynumber: 4.4 Consensus size: 476
61949 TAAACATGAC
* *
61959 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCATGAAAGGCTTTTTTC
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTC
* * * * * *
62024 CCACCAGTTTTTGTGAAGTCTAACTTCGTGACTCAATTGAGACAAAAATGGATTCTGGTAATGAC
66 CCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAC
* **
62089 CTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTCATGTTAGGATAAAGGATAATGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATG
* ** * *
62154 ATATTCTTTTGCATATAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATGCCATAA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAA
* ** * *
62219 ATAAGACAAGCATCGATTATCGTAATTGTCTCCATTCTCTTCAAGATT-GAGAACCAAAAACATA
261 ATAAGACAAGCATCGATTATCATAACAGTCTCCATTCTTTTCAAGATTGGA-AACCAAAAACACA
* * * * *
62283 TTCCCTTTATTAGGATACATGACATTATTGCTTTGTTGACGCAAAAAAAGCTTTTCTTGCCACAG
325 TTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCG
* * ** * *
62348 TTTTTGATAAAATCAAAGTTAGTCAATTAAATAAGAGAAAC-TAGAATAGTCATACTAAT-CCTA
390 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAGAGTCATACTAATCCCTA
* * **
62411 GGTCTTTTCAGGATTAGGCAGTAT
454 -TTCTTTTCAAGATTAGGCACCAT
** * ** * *
62435 AAATGTAGTCTTCTCATAAGGATACATGATATTGACACTTTGGTTTTGAAAG-AAGGGTTTTCTT
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTT-TT
* * *
62499 CCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
65 CCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * * * * * * * *
62564 TCTTCATTTATTTTGGGATTAGGCATTATAAACACCTTCTCCTCATTAGGATAAATGTTATTCAT
130 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGAT
* * * * * *
62629 GATTTTGTTTTGCATTGAAATCTTTTATTTGCCCTATTTACGTTAAAATTAAAGTTCATCCCTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTA
** * * *
62694 AATAAGGTAAGCATCGAGTCTCATAATAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAACACA
260 AATAAGACAAGCATCGATTATCATAACAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAACACA
** * * * * * **
62759 TTTTCTTTATTATGATGCATGACATTAATGCTATGGTGATGCAAAAAAAGCTTTTCTTACTGCCG
325 TTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCG
* ** * *
62824 TTTTTCATAGAATCAAAGTTTGTCTCTTAAATGGGACAAACGTGAAGAGTCATACTCATCCCTAT
390 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTAT
*
62889 TTTTTTCAAGATTAGGCACCAT
455 TCTTTTCAAGATTAGGCACCAT
* * * * * * *
62911 AATCATAGTCTTCTCATAAGTATACACTATATTAATGATTTGGTTTCGCAAGAAAAGCTTTTTTC
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTC
* * * * *
62976 CCACCATTTTTTGTAAAGTCTGACATCGTGCCTTAAATGAGACAAACATGGATTCTAGAAATGAC
66 CCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAC
* *
63041 CTTCATTCATTTTGTGATTAGGCACGATAAACACATTCTTCACATTAAGATAAAGGATAATGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATG
* * * *
63106 ATTTTCTTTTCCATGGAAATCTTCTCTTTGCGTTACTTACCTTAAAATCAAAGTTCATCCCTTAA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAA
* * * * * * * *
63171 ATAAGATAAGCATCAATTCAT-GTAACAATCTCCAATCTTTTCAAGATTGGGAACTAAAAACAAA
261 ATAAGACAAGCATCGATT-ATCATAACAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAACACA
* * * * *
63235 TT-CCTTCATTAGGATACATGACATTGAGGCTTTGGTGACTCAAAAAAAGCTTTTCTTTCCACTG
325 TTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCG
* * *
63299 TTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACGAAAAGTCATACTAATCCCTAT
390 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTAT
*
63364 TCTTTTCAAGATTTGGCACCAT
455 TCTTTTCAAGATTAGGCACCAT
* * * *
63386 AAGCATAGTTTTCTCATAAGGGA-ACACGATATTAATGCTTTGGTTTTGCAAGAAAAGCTTTTTT
1 AAACATAGTCTTCTCATAA-GGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTT
* * *
63450 CCCACCAATTTTTATAAAATCTAACTTCGTGCCTCAACTGAGACAAACATGGATTCTAGTAATGA
65 CCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * *
63515 -CATCATTCATTTTATGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATTAT
130 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGAT
*
63579 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTA
* * * * * *
63644 AATGAGGCAAGCATTGATTATCGTAACAGTCTCCATTCCTTTCAAGGTTAGG-AACCAAAAACAC
260 AATAAGACAAGCATCGATTATCATAACAGTCTCCATTCTTTTCAAGATT-GGAAACCAAAAACAC
* * * *
63708 ATTCCCTTCATTAGGATACAAGATATTGATGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACC
324 ATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACC
* *
63773 GTTTTTGATGGAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAAGAGTCATACTAATCCCTA
389 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTA
*
63838 TTCTTTTCAAGATTTGGCACCAT
454 TTCTTTTCAAGATTAGGCACCAT
* ** * * *
63861 AAACGTAGTCTTCTGGTAAGGGTATGA-GATATTGATGCTTTGGTTTCT-CAAGAAAGGCCTTTT
1 AAACATAGTCTTCTCATAAGGATA-CACGATATTGATGCTTTGGTTT-TGCAAGAAAGGCTTTTT
* * * * * *
63924 TCCCACCAATTTTTGTAAAGTCTAACTTCGTACCTTAATTGAGACAAACAAGGATTCTAGCAAAG
64 TCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
63989 ACCTTTATTCATTTTATGAATAGGCACGATAAACACATTCTTCACA
129 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
64035 AGCATCGATT
Statistics
Matches: 1366, Mismatches: 220, Indels: 28
0.85 0.14 0.02
Matches are distributed among these distances:
473 2 0.00
474 171 0.13
475 490 0.36
476 688 0.50
477 15 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (476 bp):
AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTC
CCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAC
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATG
ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAA
ATAAGACAAGCATCGATTATCATAACAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAACACAT
TCCCTTCATTAGGATACATGACATTAATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGT
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATT
CTTTTCAAGATTAGGCACCAT
Found at i:65843 original size:475 final size:476
Alignment explanation
Indices: 64032--67737 Score: 4722
Period size: 475 Copynumber: 7.8 Consensus size: 476
64022 CACATTCTTC
* * * ** * *
64032 ACAAGCATCGATTCTCATAACTGTCTTCACCCTTTTCAAGATTAGGAACCAAAAACTCATTCGCT
1 ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
* * *
64097 TCATTAGGATACATGACATTGATGTTTTGGTGATGC-AAAAAAAGCTTTTCTTACCACCATTTTT
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTACCACTATTTTT
** * *
64161 GATATTATCAAAGTTTGTCTC-CTAAATAAGAGAAACTTGAATAGTCATACTAATCCCTATTCTT
131 GATAGAATCAAAGTTTGTCTCTC-AAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTT-TT
* * * ** * *
64225 TTCAAGATTTGGCACAATAAATATAGTATTCTCATAAGGATACACGATTTTGATGCTTTGGTTTT
194 TTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT
* * * * * * *
64290 GCAAA-AAAGGCTTT-TTTCCACCAATTTTTGTAAACTCTAACATCGTGCCTCAATTAAGACAAA
259 G-AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* ** * * * *
64353 CATGGATTCTATTGTTGGA-CTTCATTCATTTTGCGATTAGACACTATAAACACATTTTTCACAC
323 CATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
* *
64417 TAGAATAAAGGATAATGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
387 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
*
64482 AATCAAAGTTCATCTCTTAAATAAG
452 AATCAAAGTTCATCCCTTAAATAAG
* * * * ** *
64507 ACAAGCATCAATTCTCATAATAGTCTCCATTGTTTTCAAGATTGGGAACCGAAAATGCATTTCCT
1 ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
* * * * *
64572 TCATTAGGATACATGAAATTGACGCTTTGGTGACGCAAGAAAAAGTTTTTCTTACCACAATTTTT
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTACCACTATTTTT
* * * * * * *
64637 TATATAATCAAAGTTTGCCTCTAAAATAAGATAAACATA-AAGAGTCATACTAATCCCTATTTTT
131 GATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCT-GTTTT
* ** * * * *
64701 TTCAAGG-TTTGGCACCATAAACAAAGTTTTCTCAGAAGGATACA-AAAATTGATGCTTTGG-TT
194 TTC-AGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * * *
64763 TCACAAGAAAAGG-TCTT-TTCCCACCAAGTTTTGTAAAGTCTAACTTCATGTCTCAAATAAGAC
258 TGA-AAG-AAAGGCT-TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGAC
* * * * * *
64826 AAACATAGATTCTAGTATTGGA-CTTCATTCATTTTGTTATTGGGCACTAAAAACACATTCTTCG
320 AAACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCA
* * *
64890 TATTAGGATAAAGCATAATGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCTTATTTACCT
384 CATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCT
* *
64955 TAAAATCAAATTTCATCCCTTATATAAG
449 TAAAATCAAAGTTCATCCCTTAAATAAG
* * * * *
64983 ACAAGCATCGATTCTCATAATAGT-TCCCATTTTTTTAAAGATT-GGGACCAAAAACACATTCCC
1 ACAAGCATCAATTCTCATAACAGTCT-CCATTCTTTTCAAGATTAGGAACCAAAAACACATT-CC
* * **
65046 CTT-TTTAGGATACATGATATTGATGC-TTGGTGACGCAAAAAAAAAGCTTTTCTTACCACCGTT
64 CTTCATTAGGATACATGACATTGATGCTTTGGTGACGC-AAAAAAAAGCTTTTCTTACCACTATT
* * *
65109 TTTGATAGAATCAAAGTTTGTCTCTCAAATAAAAAAAACTAGAATAGTC--A-TAATCCCTATTT
128 TTTGATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTT
* * * *
65171 TTTTAGGATTAGGCACTATAAACGTAGTCTTCGCATAAGGATACATGATATTGATGCTTTGGCTT
193 TTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TT
* * *
65236 TT-AAAGAAATGCTTTCTTCCCCCCTATTTTTGTAAAGTCTGACTTAGTGCCTCAAATGAGACAA
257 TTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAA
* *
65300 ATATGGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCACTATAAACACATTCTTCACAT
322 ACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
* *
65365 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTACCTTAA
387 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
65430 AATCAAAGTTCATCCCTTAAATAAG
452 AATCAAAGTTCATCCCTTAAATAAG
* * * * *
65455 ATAAGCATCAATTCTCGTAACAGTC-CCATCCTTTTCAAGATTAGCAGCCAAAAACACATTCCCT
1 ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
*
65519 TCATTAGGATACATGACATTGATGC-TTGGTGACGCAAAAAAAATG-TTTTCTTACCACTGTTTT
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAA-GCTTTTCTTACCACTATTTT
* * * * *
65582 TTATAGAATCAAAATTTGTCTCTCAAATAAAAAAAAACTAGAATAGTCATACTAGTCCCTGTTTT
130 TGATAGAATCAAAGTTTGTCTCTCAAAT-AAGAGAAACTAGAATAGTCATACTAATCCCTGTTTT
* * *
65647 TTCAGGATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACACGATATTAATGCTTTGGTTTT
194 TTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT
* * *
65712 GAAAGAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACTTCGTGCCACAAATGAGACAAAC
259 GAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAAC
* **
65777 GTGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAATGCATTCTTCACATTA
324 ATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTA
* *
65842 GGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTACCTTAAAA
389 GGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA
*
65907 TCAATGTTCATCCCTTAAATAAG
454 TCAAAGTTCATCCCTTAAATAAG
* * * * *
65930 ATAAGCATCAATTCTCGTAACAGTC-CCATCCTTTTCAAGATTAGGAGCCAAAAACACATTTCCT
1 ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
*
65994 TCATTAGGATACATGACATTGATGC-TTGGTGACGCAAAAAAAAATG-TTTTCTTACCACTGTTT
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGC-AAAAAAAA-GCTTTTCTTACCACTATTT
* * * * *
66057 TTTATAAAATCAAAATTTGTCTCTCAAATAAGAGAAACTAGAATAGTCGTACTAGTCCCTGTTTT
129 TTGATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTTT
* * * *
66122 TTCAGGATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTT
194 TTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT
* * *
66187 GAAAGAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACTTCGTGCCACAAATGAGACAAAC
259 GAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAAC
*
66252 ATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACGCATTCTTCACATTA
324 ATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTA
* *
66317 GGATAAAGGATAATGATG-TTTCCCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAA
389 GGATAAAGGATAATGATGATTT-TCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
*
66381 ATCAAAGCTCATCCCTTAAATAAG
453 ATCAAAGTTCATCCCTTAAATAAG
* * *
66405 ACAAGCATCGATTCTCGTAACAGTC-CGATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
1 ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
* * *
66469 TCATTAGGATACATGACATTGATGCTTTGGTGACAC-CAAAAAAGCTTTTCTTGCCACTATTTTT
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTACCACTATTTTT
* * *
66533 GATAGAATCAGAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTC--A-TAATCCCTGTATTTT
131 GATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGT-TTTT
* * *
66595 TCAGGATTAGGCACCATAAACGTAGTTTTCTCATAAGAATACACGATATTGATGCTTTGGCTTTG
195 TCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
*
66660 AAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA
260 AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA
* * * * * *
66725 AGGATTCTAGTAATGACCTTTATTCATTTTGTGATTAGGCACCATAAACACTTTTTTCACATTTG
325 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAG
* *
66790 GATAAAGGATAATAATGATTTTCTTTTGCATGGAAATCTTTTCATTGCCTTATTTACCTTAAAAT
390 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
*
66855 CAAAGTTCATCTCTTAAATAAG
455 CAAAGTTCATCCCTTAAATAAG
* * *
66877 GCAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACGCATTCCCT
1 ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
* * * * * *
66942 TCTTTAGGATGCAGGACATTGATGCTTTGGTGATGTAAAAAAAA-CTTTTCTTACCACTGTTTTT
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTACCACTATTTTT
* * ** * * *
67006 GATAGAATCAAAGTTTGTCTCTTAAATAATAGAAGTTAGAATAGCCATACTAAACCTTGTTCTTT
131 GATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTT-TTT
* *
67071 AT-AGGATTAGGCACCATAAAAGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTT
195 -TCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT
* *
67135 GAAAGAAAGGC-TTCGTTCCCCTCAA-TTTTGTAAAGTTTGACTTCGTGCCTCAAATGAGACAAA
259 GAAAGAAAGGCTTTC-TTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * *
67198 CATTGATTCTAGTAATGATCC-TCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCACAT
323 CATGGATTCTAGTAATGA-CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACAT
* * *
67262 TAGGATAAAGGATGAGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCTTATTTACCTTAA
387 TAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAA
* *
67327 AGTCAATGTTCATCCCTTAAATAAG
452 AATCAAAGTTCATCCCTTAAATAAG
* * ** * * *
67352 GCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCAACATTAGGAACCAAAAACACATTGCCT
1 ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
* * * *
67417 TCATTAGGATACAAGACATTGATTCTTTGGTGATGC-AAAAAAAGCTTTTCTTACCACCATTTTT
66 TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTACCACTA-TTTT
* * * * *
67481 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCAAACTAATCCCTATTGT
130 TGATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTGTT-T
* * * * * * * *
67545 TTTCAAGATTTGGCACCATAAACATTGTCTTCTCATAAGGATATACAATATTGACGCTTCGG-TT
193 TTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
** * * * * * * *
67609 ACACAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAACTTTGTGCCTCAATTGAGGCAA
258 TGA-AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAA
* * * *
67674 ACATGGACAT-TAGTAATGGCCTTCATTCATTTTCTGATTAGGCGCTATAAACACATTCTTCACA
322 ACATGGA-TTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
67738 AGCATCGATT
Statistics
Matches: 2869, Mismatches: 309, Indels: 104
0.87 0.09 0.03
Matches are distributed among these distances:
470 3 0.00
471 123 0.04
472 569 0.20
473 133 0.05
474 104 0.04
475 1232 0.43
476 612 0.21
477 92 0.03
478 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (476 bp):
ACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTACCACTATTTTT
GATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTTTTT
CAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
AAAGTTCATCCCTTAAATAAG
Found at i:65889 original size:947 final size:948
Alignment explanation
Indices: 64032--67737 Score: 4759
Period size: 947 Copynumber: 3.9 Consensus size: 948
64022 CACATTCTTC
* * * ** * * *
64032 ACAAGCATCGATTCTCATAACTGTCTTCACCCTTTTCAAGATTAGGAACCAAAAACTCATTCGCT
1 ACAAGCATCAATTCTCATAACAGTC-CCATTCTTTTCAAGATT-GGGACCAAAAACACATTCCCT
* * *
64097 TCATTAGGATACATGACATTGATGTTTTGGTGATGC--AAAAAAAGCTTTTCTTACCACCATTTT
64 TCATTAGGATACATGACATTGATG-CTTGGTGACGCAAAAAAAAAGCTTTTCTTACCACCGTTTT
** *
64160 TGATATTATCAAAGTTTGTCTC-CTAAATAAGAGAAACTTGAATAGTCATACTAATCCCTATTCT
128 TGATAGAATCAAAGTTTGTCTCTC-AAATAAGAGAAACTAGAATAGTC-TACTAATCCCTATT-T
* * * ** * *
64224 TTTCAAGATTTGGCACAATAAATATAGTATTCTCATAAGGATACACGATTTTGATGCTTTGGTTT
190 TTTCAGGATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * * * *
64289 TGCAAA-AAAGGCTTT-TTTCCACCAATTTTTGTAAACTCTAACATCGTGCCTCAATTAAGACAA
255 TG-AAAGAAAGGCTTTCTTCCCCCCTATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAA
* ** * * *
64352 ACATGGATTCTATTGTTGGA-CTTCATTCATTTTGCGATTAGACACTATAAACACATTTTTCACA
319 ACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
* * *
64416 CTAGAATAAAGGATAATGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCTTATTTACCTTA
383 TTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTA
* * * *
64481 AAATCAAAGTTCATCTCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTGTTTTCAA
448 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAA
* * ** * * *
64546 GATTGGGAACCGAAAATGCATTTCCTTCATTAGGATACATGAAATTGACGCTTTGGTGACGCAAG
513 GATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAA-
* * * * * *
64611 AAAAAGTTTTTCTTACCACAATTTTTTATATAATCAAAGTTTGCCTCTAAAATAAGATAAACATA
577 AAAAAGCTTTTCTTACCACTATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAAC-TA
* * * * *
64676 -AAGAGTCATACTAATCCCTATTTTTTTCAAGG-TTTGGCACCATAAACAAAGTTTTCTCAGAAG
641 GAAGAGTCATACTAATCCCT-GTTTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* *
64739 GATACA-AAAATTGATGCTTTGGTTTCACAAGAAAAGG-TCTT-TTCCCACCAAGTTTTGTAAAG
704 GATACACAATATTGATGCTTTGGTTTCACAAG-AAAGGCT-TTCTTCCCACCAATTTTTGTAAAG
* * * * * *
64801 TCTAACTTCATGTCTCAAATAAGACAAACATAGATTCTAGTATTGGA-CTTCATTCATTTTGTTA
767 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGA
* * ** *
64865 TTGGGCACTAAAAACACATTCTTCGTATTAGGATAAAGCATAATGATGATTTTCTTTTGCATGGA
831 TTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGA
*
64930 AAT-ATTTTCTTTGCCTTATTTACCTTAAAATCAAATTTCATCCCTTATATAAG
896 AATCA-TTTCTTTGCCTTATTTACCTTAAAATCAAATTTCATCCCTTAAATAAG
* * * *
64983 ACAAGCATCGATTCTCATAATAGTTCCCATTTTTTTAAAGATTGGGACCAAAAACACATTCCCCT
1 ACAAGCATCAATTCTCATAACAG-TCCCATTCTTTTCAAGATTGGGACCAAAAACACATT-CCCT
* *
65048 T-TTTAGGATACATGATATTGATGCTTGGTGACGCAAAAAAAAAGCTTTTCTTACCACCGTTTTT
64 TCATTAGGATACATGACATTGATGCTTGGTGACGCAAAAAAAAAGCTTTTCTTACCACCGTTTTT
* * *
65112 GATAGAATCAAAGTTTGTCTCTCAAATAAAAAAAACTAGAATAGTC-A-TAATCCCTATTTTTTT
129 GATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTCTACTAATCCCTATTTTTTC
* *
65175 AGGATTAGGCACTATAAACGTAGTCTTCGCATAAGGATACATGATATTGATGCTTTGGCTTTT-A
194 AGGATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTTGA
* * *
65239 AAGAAATGCTTTCTTCCCCCCTATTTTTGTAAAGTCTGACTTAGTGCCTCAAATGAGACAAATAT
258 AAGAAAGGCTTTCTTCCCCCCTATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
*
65304 GGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCACTATAAACACATTCTTCACATTAGG
323 GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
* *
65369 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTACCTTAAAATC
388 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* *
65434 AAAGTTCATCCCTTAAATAAGATAAGCATCAATTCTCGTAACAGTC-CCATCCTTTTCAAGATTA
453 AAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTA
* *
65498 GCAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC-TTGGTGACGCAAAAAAAA
518 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGC-AAAAAAA
* * * * *
65562 TG-TTTTCTTACCACTGTTTTTTATAGAATCAAAATTTGTCTCTCAAATAAAAAAAAACTAGAAT
582 -GCTTTTCTTACCACTATTTTTTATAGAATCAAAGTTTGTCTCTTAAAT-AAGAAAAACTAGAAG
* * * *
65626 AGTCATACTAGTCCCTGTTTTTTCAGGATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACA
645 AGTCATACTAATCCCTGTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * * * * * *
65691 CGATATTAATGCTTTGGTTTTGA-AAGAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACT
710 CAATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACT
* *
65755 TCGTGCCACAAATGAGACAAACGTGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
774 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
**
65820 TATAAATGCATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCATTT
839 TATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCATTT
*
65885 CTTTGCCCTATTTACCTTAAAATC-AATGTTCATCCCTTAAATAAG
904 CTTTGCCTTATTTACCTTAAAATCAAAT-TTCATCCCTTAAATAAG
* * * * *
65930 ATAAGCATCAATTCTCGTAACAGTCCCATCCTTTTCAAGATTAGGAGCCAAAAACACATTTCCTT
1 ACAAGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATTGGGA-CCAAAAACACATTCCCTT
*
65995 CATTAGGATACATGACATTGATGCTTGGTGACGCAAAAAAAAATG-TTTTCTTACCACTGTTTTT
65 CATTAGGATACATGACATTGATGCTTGGTGACGCAAAAAAAAA-GCTTTTCTTACCACCGTTTTT
* * * * *
66059 TATAAAATCAAAATTTGTCTCTCAAATAAGAGAAACTAGAATAGTCGTACTAGTCCCTGTTTTTT
129 GATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTC-TACTAATCCCTATTTTTT
* * *
66124 CAGGATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTTGA
193 CAGGATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
* *
66189 AAGAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACTTCGTGCCACAAATGAGACAAACAT
258 AAGAAAGGCTTTCTTCCCCCCTATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
*
66254 GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACGCATTCTTCACATTAGG
323 GGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
* *
66319 ATAAAGGATAATGATG-TTTCCCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
388 ATAAAGGATAATGATGATTT-TCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
* * *
66383 CAAAGCTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC-CGATTCTTTTCAAGATT
452 CAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* *
66447 AGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACACCAAAAAA
517 AGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAA
* * * * * *
66512 GCTTTTCTTGCCACTATTTTTGATAGAATCAGAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAG
582 GCTTTTCTTACCACTATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAAGAG
* * *
66577 TC--A-TAATCCCTGTATTTTTCAGGATTAGGCACCATAAACGTAGTTTTCTCATAAGAATACAC
647 TCATACTAATCCCTGT-TTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * * *
66639 GATATTGATGCTTTGGCTTTGA-AAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
711 AATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTT
* * *
66703 CGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGACCTTTATTCATTTTGTGATTAGGCACC
775 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
* * * * *
66768 ATAAACACTTTTTTCACATTTGGATAAAGGATAATAATGATTTTCTTTTGCATGGAAATCTTTTC
840 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCATTTC
* * *
66833 ATTGCCTTATTTACCTTAAAATCAAAGTTCATCTCTTAAATAAG
905 TTTGCCTTATTTACCTTAAAATCAAATTTCATCCCTTAAATAAG
* *
66877 GCAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACGCATTCCCT
1 ACAAGCATCAATTCTCATAACAGTC-CCATTCTTTTCAAGATTGGG-ACCAAAAACACATTCCCT
* * * * * *
66942 TCTTTAGGATGCAGGACATTGATGCTTTGGTGATG-TAAAAAAAA-CTTTTCTTACCACTGTTTT
64 TCATTAGGATACATGACATTGATGC-TTGGTGACGCAAAAAAAAAGCTTTTCTTACCACCGTTTT
* * ** * * * *
67005 TGATAGAATCAAAGTTTGTCTCTTAAATAATAGAAGTTAGAATAGCCATACTAAACCTTGTTCTT
128 TGATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTC-TACTAATCCCTATT-TT
* * *
67070 TAT-AGGATTAGGCACCATAAAAGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTT
191 T-TCAGGATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * *
67134 TGAAAGAAAGGC-TTCGTTCCCCTC-AATTTTGTAAAGTTTGACTTCGTGCCTCAAATGAGACAA
255 TGAAAGAAAGGCTTTC-TTCCCCCCTATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAA
* * *
67197 ACATTGATTCTAGTAATGATCC-TCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCACA
319 ACATGGATTCTAGTAATGA-CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA
* * *
67261 TTAGGATAAAGGATGAGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCTTATTTACCTTA
383 TTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTA
* * * * **
67326 AAGTCAATGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCAA
448 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAA
* * * * *
67391 CATTAGGAACCAAAAACACATTGCCTTCATTAGGATACAAGACATTGATTCTTTGGTGATGCAAA
513 GATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAA
* *
67456 AAAAGCTTTTCTTACCACCATTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-AT
578 AAAAGCTTTTCTTACCACTATTTTTT-ATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTA-
* * * * *
67520 GAAGAGTCAAACTAATCCCTATTGTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATAAGG
641 GAAGAGTCATACTAATCCCTGTT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * *
67585 ATATACAATATTGACGCTTCGGTTACACAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCT
705 ATACACAATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * * *
67650 AACTTTGTGCCTCAATTGAGGCAAACATGGACAT-TAGTAATGGCCTTCATTCATTTTCTGATTA
770 AACTTCGTGCCTCAAATGAGACAAACATGGA-TTCTAGTAATGACCTTCATTCATTTTGTGATTA
*
67714 GGCGCTATAAACACATTCTTCACA
834 GGCACTATAAACACATTCTTCACA
67738 AGCATCGATT
Statistics
Matches: 2419, Mismatches: 285, Indels: 101
0.86 0.10 0.04
Matches are distributed among these distances:
945 3 0.00
946 141 0.06
947 1008 0.42
948 461 0.19
949 84 0.03
950 433 0.18
951 117 0.05
952 171 0.07
953 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (948 bp):
ACAAGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATTGGGACCAAAAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTGGTGACGCAAAAAAAAAGCTTTTCTTACCACCGTTTTTGA
TAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATAGTCTACTAATCCCTATTTTTTCAG
GATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
AAAGGCTTTCTTCCCCCCTATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGA
TTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATA
AAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
GTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGA
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTT
TTCTTACCACTATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAAGAGTCAT
ACTAATCCCTGTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATAT
TGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCC
TCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCC
TTATTTACCTTAAAATCAAATTTCATCCCTTAAATAAG
Found at i:66310 original size:158 final size:159
Alignment explanation
Indices: 65652--66310 Score: 350
Period size: 159 Copynumber: 4.2 Consensus size: 159
65642 GTTTTTTCAG
* * *
65652 GATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACACGATATTAATGCTTTGGTTTTG-AAA
1 GATTAGGCACTATAAACGCATTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTTGAAAA
* * * * *
65716 GAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACTTCGTGCCACAAATGAGACAAACGTGG
66 GAAAGGCTTTCTT-CCCCCTATTTTTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACATGA
65781 ATTCTAGTAATGACCTTCATTCATTTT-GT
130 ATTCTAGTAATGACCTTCATTCATTTTCGT
* ** * * * * * * ** * **
65810 GATTAGGCACTATAAATGCATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACGCATTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTTGAAAA
* ** * * * ** * *
65875 GAAA-TCATTTCTTTGCCCTATTTACCT-TAAAATCAATG--TTCATCCCTTAAATAAGATAAGC
66 GAAAGGC-TTTCTTCCCCCTATTT--TTGTAAAATC--TGACTTCGTGCCACAAATAAGACAAAC
* * * * * **
65936 ATCAATTCTCGTAACAGTCC--CA-TCCTTTTCAA
126 ATGAATTCTAGTAA-TGACCTTCATTCATTTTCGT
* * * * * * * ***
65968 GATTAGG-AGCCAAAAACACATT-TCCTTCATTAGGATACATGACATTGATGC-TTGGTGACGCA
1 GATTAGGCA-CTATAAACGCATTCTTCTT-ATAAGGATACATGATATTAATGCTTTGGTTTTG--
* * * * * * * ** * * * *
66030 AAAAAAAATGTTTTCTTACCACTGTTTTTTATAAAATCAAAATTTGT-CTCTCAAATAAGAGAAA
62 AAAAGAAAGGCTTTCTTCCCCCT-ATTTTTGTAAAATCTGACTTCGTGC-CACAAATAAGACAAA
** * * * * *
66094 C-TAGAATAGTCGTACTAGTCCCT-GTT--TTTTCAG-
125 CAT-GAATTCTAGTAAT-GACCTTCATTCATTTTC-GT
* *
66127 GATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTTG-AAA
1 GATTAGGCACTATAAACGCATTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTTGAAAA
* * * *
66191 GAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACTTCGTGCCACAAATGAGACAAACATGG
66 GAAAGGCTTTCTT-CCCCCTATTTTTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACATGA
66256 ATTCTAGTAATGACCTTCATTCATTTT-GT
130 ATTCTAGTAATGACCTTCATTCATTTTCGT
66285 GATTAGGCACTATAAACGCATTCTTC
1 GATTAGGCACTATAAACGCATTCTTC
66311 ACATTAGGAT
Statistics
Matches: 350, Mismatches: 117, Indels: 68
0.65 0.22 0.13
Matches are distributed among these distances:
156 4 0.01
157 65 0.19
158 126 0.36
159 134 0.38
160 18 0.05
161 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (159 bp):
GATTAGGCACTATAAACGCATTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTTGAAAA
GAAAGGCTTTCTTCCCCCTATTTTTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACATGAA
TTCTAGTAATGACCTTCATTCATTTTCGT
Found at i:66320 original size:158 final size:159
Alignment explanation
Indices: 65177--66321 Score: 358
Period size: 158 Copynumber: 7.2 Consensus size: 159
65167 ATTTTTTTAG
* * * * *
65177 GATTAGGCACTATAAACGTAGTCTTCGCATAAGGATACATGATATTGATGCTTTGGCTTTT--AA
1 GATTAGGCACTATAAACGCATTCTTCACATTAGGATACATGATATTAATGCTTTGG-TTTTGAAA
* * * * * *
65240 AGAAATGCTTTCTTCCCCCCTATTTTTGTAAAGTCTGACTTAGTGCCTCAAATGAGACAAATATG
65 AGAAAGGCTTTCTT-CCCCCTATTTTTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACATG
* *
65305 GATTCTAGTAATGACCTTCATTCATTTT-TT
129 AATTCTAGTAATGACCTTCATTCATTTTCGT
* * * * * * ** * **
65335 GATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACGCATTCTTCACATTAGGATACATGATATTAATGCTTTGGTTTTGAAAA
* ** * ** * * * ** * *
65400 GAAA-TCATTTCTTTGCCCTATTTACCT-TAAAATCAAAGTTCATCCCTTAAATAAGATAAGCAT
66 GAAAGGC-TTTCTTCCCCCTATTT--TTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACAT
* * * * * **
65463 CAATTCTCGTAACAGTCC--CA-TCCTTTTCAA
128 GAATTCTAGTAA-TGACCTTCATTCATTTTCGT
* * * * * ***
65493 GATTA-GCAGCCAAAAACACATTCCCTT--CATTAGGATACATGACATTGATGC-TTGGTGACGC
1 GATTAGGCA-CTATAAACGCATT--CTTCACATTAGGATACATGATATTAATGCTTTGGTTTTG-
* * * * * * ** * * * *
65554 AAAAAAAATGTTTTCTTACCACTGTTTTT-TATAGAATCAAAATTTGT-CTCTCAAATAA-AAAA
62 AAAAGAAAGGCTTTCTTCCCCCTATTTTTGTA-A-AATCTGACTTCGTGC-CACAAATAAGACAA
* * * * *
65616 AAACTAGAATAGTC-A-TACTAGTCCCT-GTT--TTTTCAG-
124 ACA-T-GAAT--TCTAGTAAT-GACCTTCATTCATTTTC-GT
* * ** * *
65652 GATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACACGATATTAATGCTTTGGTTTTG-AAA
1 GATTAGGCACTATAAACGCATTCTTCACATTAGGATACATGATATTAATGCTTTGGTTTTGAAAA
* * * * *
65716 GAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACTTCGTGCCACAAATGAGACAAACGTGG
66 GAAAGGCTTTCTT-CCCCCTATTTTTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACATGA
65781 ATTCTAGTAATGACCTTCATTCATTTT-GT
130 ATTCTAGTAATGACCTTCATTCATTTTCGT
* * * * * * ** * **
65810 GATTAGGCACTATAAATGCATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACGCATTCTTCACATTAGGATACATGATATTAATGCTTTGGTTTTGAAAA
* ** * * * ** * *
65875 GAAA-TCATTTCTTTGCCCTATTTACCT-TAAAATCAATG--TTCATCCCTTAAATAAGATAAGC
66 GAAAGGC-TTTCTTCCCCCTATTT--TTGTAAAATC--TGACTTCGTGCCACAAATAAGACAAAC
* * * * * **
65936 ATCAATTCTCGTAACAGTCC--CA-TCCTTTTCAA
126 ATGAATTCTAGTAA-TGACCTTCATTCATTTTCGT
* * * * * ***
65968 GATTAGG-AGCCAAAAACACATTTCCTT--CATTAGGATACATGACATTGATGC-TTGGTGACGC
1 GATTAGGCA-CTATAAACGCA-TT-CTTCACATTAGGATACATGATATTAATGCTTTGGTTTTG-
* * * * * * * ** * * * *
66029 AAAAAAAAATGTTTTCTTACCACTGTTTTTTATAAAATCAAAATTTGT-CTCTCAAATAAGAGAA
62 -AAAAGAAAGGCTTTCTTCCCCCT-ATTTTTGTAAAATCTGACTTCGTGC-CACAAATAAGACAA
** * * * * *
66093 AC-TAGAATAGTCGTACTAGTCCCT-GTT--TTTTCAG-
124 ACAT-GAATTCTAGTAAT-GACCTTCATTCATTTTC-GT
* * ** *
66127 GATTAGGCACTATAAACGTAGTCTTCTTATAAGGATACATGATATTAATGCTTTGGTTTTG-AAA
1 GATTAGGCACTATAAACGCATTCTTCACATTAGGATACATGATATTAATGCTTTGGTTTTGAAAA
* * * *
66191 GAAAGGCTTTCTTCCCCCCTATTTTTGTGAAGTCTGACTTCGTGCCACAAATGAGACAAACATGG
66 GAAAGGCTTTCTT-CCCCCTATTTTTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACATGA
66256 ATTCTAGTAATGACCTTCATTCATTTT-GT
130 ATTCTAGTAATGACCTTCATTCATTTTCGT
66285 GATTAGGCACTATAAACGCATTCTTCACATTAGGATA
1 GATTAGGCACTATAAACGCATTCTTCACATTAGGATA
66322 AAGGATAATG
Statistics
Matches: 688, Mismatches: 225, Indels: 148
0.65 0.21 0.14
Matches are distributed among these distances:
155 2 0.00
156 12 0.02
157 101 0.15
158 289 0.42
159 244 0.35
160 34 0.05
161 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (159 bp):
GATTAGGCACTATAAACGCATTCTTCACATTAGGATACATGATATTAATGCTTTGGTTTTGAAAA
GAAAGGCTTTCTTCCCCCTATTTTTGTAAAATCTGACTTCGTGCCACAAATAAGACAAACATGAA
TTCTAGTAATGACCTTCATTCATTTTCGT
Found at i:68070 original size:380 final size:380
Alignment explanation
Indices: 67361--68116 Score: 949
Period size: 380 Copynumber: 2.0 Consensus size: 380
67351 GGCAAGCGTT
*
67361 GATTCTCGTAACAGTCTCCATTCTTTTCAACATTAGGAACCAAAAACACATTGCCTTCATTAGGA
1 GATTCTCGTAACAGTCTCCATTCTTTTCAACAATAGGAACCAAAAACACATTGCCTTCATTAGGA
* *
67426 TACAAGACATTGATTCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTTGATAGAATC
66 T---AGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTTGATAGAATC
* *
67491 AAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTGTTTTCAAGATTT
128 AAAGTTTCTCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTGTTTTCAAGATTA
* * *
67556 GGCACCATAAACATTGTCTTCTCATAAGGATATACAATATTGACGCTTCGGTTACACAAGAAAGG
193 GGCACCATAAACATAGTCTTCTCATAACGATACACAATATTGACGCTTCGGTTACACAAGAAAGG
* * *** ** *
67621 CTTTTTTCTCACCAATTTTTGTAAAGTCTAACTTTGTGCCTCAATTGAGGCAAACATGGACATTA
258 CTTTCTTCTCACCAATTTTTATAAAGTCTAACTTCAAGCCTCAAACGAGACAAACATGGACATTA
** * * *
67686 GTAATGGCCTTCATTCATTTTCTGATTAGGCGCTATAAACACATTCTTCACAAGCATC
323 GTAATAACCATCATTCATTTTCTGAATAGGCACTATAAACACATTCTTCACAAGCATC
* * * *
67744 GATTCTCGTAACTGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACA-TGCCCTTCATTTGG
1 GATTCTCGTAACAGTCTCCATTCTTTTCAACAATAGGAACCAAAAACACATTG-CCTTCATTAGG
*
67808 AT-GACATTGATGCTTTGGTGACGCAAAAAAAAAGCTTTTTTTACCACCATTTTTT-ATAGAATC
65 ATAGACATTGATGCTTTGGTGACGC--AAAAAAAGCTTTTCTTACCACCATTTTTTGATAGAATC
* ** * *
67871 AAAGTTTCTCTAC-TAAATAAGAGAAAC-TAGAATTGTCATAC-AAGTCCCTATTTTTTTCAAGA
128 AAAGTTTCTCT-CTTAAATAAGACAAACAT-GAAGAGTCAAACTAA-TCCCTATTGTTTTCAAGA
* * * * * **
67933 TTAGGCACCATAAACATAGTCTTCTTATAACGTTACCCAATATTGATGCTTTGGATTTGA-AAGA
190 TTAGGCACCATAAACATAGTCTTCTCATAACGATACACAATATTGACGCTTCGG-TTACACAAG-
*
67997 AAAGGCTTTCTTC-C-CCTAATTTTTATAAAGTCTGACTTCAAGCCTCAAACGAGACAAACAT-G
253 AAAGGCTTTCTTCTCACC-AATTTTTATAAAGTCTAACTTCAAGCCTCAAACGAGACAAACATGG
*
68059 A-ATTCTAGTAATAACCATCATTCATTTTGTGAATAGGCACTATAAACACATTCTTCAC
317 ACA-T-TAGTAATAACCATCATTCATTTTCTGAATAGGCACTATAAACACATTCTTCAC
68117 TTTAGGATAA
Statistics
Matches: 322, Mismatches: 40, Indels: 25
0.83 0.10 0.06
Matches are distributed among these distances:
378 1 0.00
379 28 0.09
380 189 0.59
381 44 0.14
382 2 0.01
383 58 0.18
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (380 bp):
GATTCTCGTAACAGTCTCCATTCTTTTCAACAATAGGAACCAAAAACACATTGCCTTCATTAGGA
TAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTTGATAGAATCAAA
GTTTCTCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTGTTTTCAAGATTAGGC
ACCATAAACATAGTCTTCTCATAACGATACACAATATTGACGCTTCGGTTACACAAGAAAGGCTT
TCTTCTCACCAATTTTTATAAAGTCTAACTTCAAGCCTCAAACGAGACAAACATGGACATTAGTA
ATAACCATCATTCATTTTCTGAATAGGCACTATAAACACATTCTTCACAAGCATC
Found at i:68655 original size:476 final size:474
Alignment explanation
Indices: 67735--68903 Score: 1618
Period size: 476 Copynumber: 2.5 Consensus size: 474
67725 CACATTCTTC
* * *
67735 ACAAGCATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATGCCCT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * * *
67800 TCATTTGG---ATGACATTGATGCTTTGGTGACGCAAAAAAAAAGCTTTTTTTACCACCATTTTT
66 TCATTAGGATAATGACATAGATGCTTTGGTGACGC-AAAAAAAAGCTTTTCTTATCACCATTTTT
* * * *
67862 TATAGAATCAAAGTTTCTCTACTAAATAAGAGAAACTAGAATTGTCATACAAGTCCCTATTTTTT
130 GATAGAATCAAAGTTTATCT-CTAAATAAGAGAAACTAGAATAGTCATACTAGTCCCTATTTTTT
* * *
67927 TCAAGATTAGGCACCATAAACATAGTCTTCTTATAACGTTACCCAATATTGATGCTTTGGATTTG
194 TCAAGATTAGGCACCATAAACATAGTCTTATTATAACGATACACAATATTGATGCTTTGGATTTG
*
67992 AAAGAAAAGGCTTTCTTCCCCTAATTTTTATAAAGTCTGACTTCAAGCCTCAAACGAGACAAACA
259 AAAGAAAAGGCTTTCTTCCCCTAATTTTTATAAAGTCCGACTTCAAGCCTCAAACGAGACAAACA
* *
68057 TGAATTCTAGTAATAACCATCATTCATTTTGTGAATAGGCACTATAAACACATTCTTCACTTTAG
324 TGAATTCTAGTAATAACCATCATTCATTTTGTGAATAGGCACTATAAACACAATCTTCACATTAG
* *
68122 GATAAAGGATAATGATGATTTTCTTTTTATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
389 GATAAAGGATAATGATGATTCTCTTTTCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
*
68187 AAAGTTCATCCCTTAAATAGG
454 AAAGTTCATCCCTTAAATAAG
68208 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
1 ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* *
68273 TCATTAGGATACATGACACAGATGCTTTGGTGATGCAAAAAAAAGCTTTTCTTATCACCATTTTT
66 TCATTAGGATA-ATGACATAGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTATCACCATTTTT
* * *
68338 GATAGGATCAAAATTTATCTCTCAAATAAGAGAAACTAGAATAGTCACACTAGTCCCTATTTTTT
130 GATAGAATCAAAGTTTATCTCT-AAATAAGAGAAACTAGAATAGTCATACTAGTCCCTATTTTTT
* * ** *
68403 TCAAGATTAGGCACTATAAACATAGTCTTATTATAAGGATACATGATATTGATGCTTTGGTTTTG
194 TCAAGATTAGGCACCATAAACATAGTCTTATTATAACGATACACAATATTGATGCTTTGGATTTG
* * ** *
68468 AAAG-AAAGGCTTTCTTCCGCCTACTTTTTGTAAAGTCCGACTTCGTGCCTCAAATGAGACAAAC
259 AAAGAAAAGGCTTTCTTCC-CCTAATTTTTATAAAGTCCGACTTCAAGCCTCAAACGAGACAAAC
* * * *
68532 ATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATTA
323 ATGAATTCTAGTAATAACCATCATTCATTTTGTGAATAGGCACTATAAACACAATCTTCACATTA
*
68597 GGTTAAAGGATAATGATGATTCTCTTTTGCATGGAAATCTTTTCTTTGCCTT-TTTACCTTAAAA
388 GGATAAAGGATAATGATGATTCTCTTTT-CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA
*
68661 TCAAAGTTTATCCCTTAAATAAG
452 TCAAAGTTCATCCCTTAAATAAG
* ** * *
68684 ACAAGCATCGATTCTCCT-TGTAATCACCATTCTTTTCATGATTGGGAACCAAAAACACATTCCC
1 ACAAGCATCGATTCTCGTAACT-ATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * ** * * **
68748 TTCACTAGGATATATGACATTA-TTGCTTTGAAGACGC-ACAAAAAGCTTTTCTTATCGCTGTTT
65 TTCATTAGGATA-ATGACA-TAGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTATCACCATTT
* * * * * *
68811 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-TGTGAAGAGTCATACTAATCCCTATTC
128 TTGATAGAATCAAAGTTTATCTC-TAAATAAGAGAAACT-AGAATAGTCATACTAGTCCCTATTT
* *
68875 TTTTCAAGATTTGGTACCATAAACATAGT
191 TTTTCAAGATTAGGCACCATAAACATAGT
68904 AATGACCTAA
Statistics
Matches: 616, Mismatches: 69, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
473 69 0.11
474 1 0.00
475 116 0.19
476 386 0.63
477 44 0.07
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (474 bp):
ACAAGCATCGATTCTCGTAACTATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
TCATTAGGATAATGACATAGATGCTTTGGTGACGCAAAAAAAAGCTTTTCTTATCACCATTTTTG
ATAGAATCAAAGTTTATCTCTAAATAAGAGAAACTAGAATAGTCATACTAGTCCCTATTTTTTTC
AAGATTAGGCACCATAAACATAGTCTTATTATAACGATACACAATATTGATGCTTTGGATTTGAA
AGAAAAGGCTTTCTTCCCCTAATTTTTATAAAGTCCGACTTCAAGCCTCAAACGAGACAAACATG
AATTCTAGTAATAACCATCATTCATTTTGTGAATAGGCACTATAAACACAATCTTCACATTAGGA
TAAAGGATAATGATGATTCTCTTTTCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
AGTTCATCCCTTAAATAAG
Found at i:70011 original size:475 final size:476
Alignment explanation
Indices: 69083--71765 Score: 3499
Period size: 475 Copynumber: 5.6 Consensus size: 476
69073 ATTATATTCA
* ** * * *
69083 ATTAGGATACAAGACATT-ATTGCTTTAATGACGCAAAAAAAAACTGTTCTTACCATCGTTTTTG
1 ATTAGGATACATGACATTGA-TGCTTTGGTGACGC-AAAAAAAGCTTTTCTTACCACCGTTTTTG
* *
69147 ATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAGAATTA-TCATACTAATCCTTGTTCTTT
64 ATAGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAA-TAGTCATACTAAACCTTGTTCTTT
* * *
69211 TCAGGATTACGCACCGTAAACATAGTCTTCTCATAACGATACGCAATATTGATGCTTTGGTTTTG
128 TCAGGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTG
* * * * *
69276 AAAGAAAGGCTTTCTTACCCCTAATTTTTATAAAATCTGACTTCGTGCCTCAAATGTGACAAACA
193 AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA
* * *
69341 -TGAATTCTAATAATGACCTTCACAT-ATTTTGTGATTAGGCACTATAAACACATTCTTCAGATT
258 TTG-ATTCTAGTAATGACCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATT
* * *
69404 TGGATAAAGGATAATGATGATTTTTTTTTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAA
321 AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
* * * *
69469 ATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATCCTCATAATAGTTCCCATTCTTTTCAAGA
386 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTCTTTTCAAGA
*
69534 TTGGGAA-TAAAATACACATTCCCTTC
451 TTGGGAACCAAAA-ACACATTCCCTTC
* * *
69560 ATTAGGATACATGACATTGATG-TTTGGTGACGCAAAAAAAGCTTTTTTTACCGCCGTTTATGAT
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * *
69624 AGAATCAAAGTTTATCTCCTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTTTTTTCG
66 AGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCA
* * **
69689 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGTACAATATTGATGCTTTGGTTTTGAAA
131 GGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAAA
*
69754 GACAA-GCTTTTTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATT
196 GA-AAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATT
* * * * * * *
69818 GATTCCAGTAATGATCTTCATTCATTTTGAGATTAGACACTATAAGCACCTTCTTCGCATTAGGA
260 GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGA
* * * *
69883 TAAATGTTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCA
325 TAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCA
* ** * * *
69948 AAGTTCATCCCTTAAATAAGGCAAGCATCGAGGCTCATAATAG-TCTCCATTCTTTTTAAGATTG
390 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTC-CCATTCTTTTCAAGATTG
* *
70012 CGAACCAAAAACACATTTCCTTC
454 GGAACCAAAAACACATTCCCTTC
* * * * * *
70035 ATTAGGATACATGATATTGATGCTATGGTGATGTACAAAAAGCTTTTCTTACCATCGTTTTTGAT
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * * * * * * *
70100 AGAATCAAAGTTTTTCTCGTAAATATA-ACAAATG-T-GAAGAGTCATACCAATCCCTAGTTTTT
66 AGAATCAAAGTTTATCTCTTAAATA-AGA-GAA-GCTAGAATAGTCATACTAA-ACCTTG-TTCT
* * *
70162 TTTCAAGATTACGCACCATAAACATAGTCTTCTCAAAAGGATACACTATATTGATGCTTTGG-TT
126 TTTCAGGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTT
* * * *
70226 TCACAAGAAAGGCTTTTTTCCCACCAATTTTTATAAAGT-TCGACTTCGTGCCTCAAATGAGACA
191 TGA-AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCT-GACTTCGTGCCTCAAATGAGACA
*
70290 AACAATGATTCTAGTAATGACCTTCATTCATTTTGTG-TATAGGCACTATAAACACATTCTTCAC
254 AACATTGATTCTAGTAATGACCTTCATTCATTTTGTGAT-TAGGCACTATAAACACATTCTTCAC
* *
70354 ATTAGGATAAAGGATAATGATGATTTTCTTTCGCATGGAAAAT-TTTTCTTTGCCTTATTTCCCT
318 ATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCTTATTTACCT
70418 TAAAAT-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTCTTTTC
382 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTCTTTTC
* * *
70482 AAGATTAGGAACCAAAATCACATTCCCATC
447 AAGATTGGGAACCAAAAACACATTCCCTTC
* * * *
70512 ATTAGGATACATGACATTGGT-CTTTGGTGACACAAAAAAAGCTTTTCTTGCCATCGTTTTTGAT
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* *
70576 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTGAACCTTGTTCTTTTCA
66 AGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCA
* * * **
70641 GGATTACGCACCATAAACGTAGTCTTCTCATAAAGATGCATGATATTGATGCTTTGGCTTTT-AA
131 GGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGG-TTTTGAA
* * * * *
70705 AGAAAGGCTTTCTTCCCCCCCATTTTTGTAATGTCTGACTTCATGCCTCAAATAAGACAAACATA
195 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATT
* * * *
70770 GATTCTAGTAATGACCTTTATTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATCAGGT
260 GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGA
70835 TAAAGGATAATGATGATTTTCTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
325 TAAAGGATAATGATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* *
70900 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATTCCCATTCTTTTTAAGATTG
389 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTCTTTTCAAGATTG
*
70965 GGAACCAAAAACACATTCCCTTT
454 GGAACCAAAAACACATTCCCTTC
* *
70988 ATTAGGATACATGACATTGATGCTTTGGTGACG-TAAAAAAGCTTTTCTTACCACTGTTTTTGAT
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * * *
71052 AGAATCAAAGTTTGTCTCCTAAATAAGAAAAGCTAGAATAGTCATACTAAACCATGTTCTTTTCA
66 AGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCA
* * ** * * * *
71117 GGATTAGGCCCCATAAATGTAGTTTTCTTATAAGGATGCACAATATTGATACTTTGGTTTTGAAA
131 GGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAAA
* * * *
71182 GAAAGGCTTCCTTCCCCTCAATTTTTGTAAAGTCTGACTACGTGCCTCAAATAAGACAAACATTG
196 GAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTG
* *
71247 ATTCTA-TAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACATTAGGAT
261 ATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGAT
*
71311 AAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTGTTTACCTTAAAATCAA
326 AAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
* * *
71376 AGCTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TCCGATTCTTTTCAAGATTAGG
391 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTCTTTTCAAGATTGGG
71440 AACCAAAAACACATTCCCTTC
456 AACCAAAAACACATTCCCTTC
** * * * * *
71461 ATTAGGATGTAAGACATTGATGCTTTGGTGACGCTAACAAAGCTTCTCTTACCACCTTTTTTGAT
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * * * * * * *
71526 AAAATCAAAGTTTATCTCTTAAATAAGACAAAC-ATGAAGAGTCAAACTAATCCCTATTCTTTTC
66 AGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTA-GAATAGTCATACTAAACCTTGTTCTTTTC
* ** * * * * *
71590 AAGATTTGGCACCATAAACATTGTCTTGTCATAAGGATACACAATATTGACGCTTCGGTTTCT-C
130 AGGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTT-TGA
* ** * * * * * * *
71654 AAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGCCTAACTTCATTCCTTAATTGAGGCAAACAT
194 AAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
* * *
71719 GGATTCTAGT-A-GGCCTTCTTTCATTTTGTGATTAGGCACTATAAACA
259 TGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACA
71766 TCGGTTCTTG
Statistics
Matches: 1935, Mismatches: 236, Indels: 74
0.86 0.11 0.03
Matches are distributed among these distances:
473 102 0.05
474 475 0.25
475 519 0.27
476 469 0.24
477 138 0.07
478 228 0.12
479 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
ATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGAT
AGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCA
GGATTACGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGAAA
GAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTG
ATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGAT
AAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTCTTTTCAAGATTGGG
AACCAAAAACACATTCCCTTC
Found at i:72838 original size:475 final size:476
Alignment explanation
Indices: 71793--73076 Score: 1729
Period size: 475 Copynumber: 2.7 Consensus size: 476
71783 TTCCATTCTT
* *
71793 GAACCAAAAACACATTCCCTTCATTAGTATACATGACATTGATGCTTTGATGATGCAAAAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGC
* *
71858 TTTTCTTGCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTC
66 TTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTC
* * *
71923 ATACTAAACCTTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGGTGGACGA
131 ATACTAAACCATGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGA
* * * *
71988 TATTGATGCTTTGGCATTT-AAAGAAAGGCTTTCTTCCCCCCCATTTTTGTAATGTCTAACTTCG
196 TATTGATGCTTTGG-TTTTGAAAGAAAGGC-TTCTTCCCCTCAATTTTTGTAAAGTCTAACTTCG
72052 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
259 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
* *
72117 AAACACAATCTTCACATTAGGTTAAAGGATAATAATGATTTTCTTTTTGCATGGAAATCTTTTCT
324 AAACACATTCTTCACATTAGGATAAAGGATAATAATGATTTTCTTTTTGCATGGAAATCTTTTCT
* *
72182 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATAAGATAAGCATCGATTCTCGTAACA
389 TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCATAACA
* * **
72247 GTTCCCATTCTTTTTAAGATTGG
454 GTTCCCATTCTTTTCAAAATTAA
* * *
72270 GAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGACGTAAAAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGC
* * *
72335 TTTTCTTACCGCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATACTC
66 TTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTC
* * * * *
72400 ATGCTAAACCATGTTCTTTTCAGGATTAGGCCCCATAAATGTAGTCTTCTTATAAGGATGCACGA
131 ATACTAAACCATGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGA
* * * *
72465 TATTGATACTTTGGTTTTGAAAGAAAGGCTTCCTTGCCCTCAATTTTTGTAAAGTCTGACTTTGT
196 TATTGATGCTTTGGTTTTGAAAGAAAGGCTT-CTTCCCCTCAATTTTTGTAAAGTCTAACTTCGT
* * *
72530 GCCTCAAATGAGACGAACATTGATTCTA-TAATGATCTTCATTCATTTTGTGATTAGGCACTATA
260 GCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATA
*
72594 AACACATTC-TCTGCATTAGGATAAAGGATAA-AGATGATTTTC-TTTTGCA-GTGAAATCTTTT
325 AACACATTCTTC-ACATTAGGATAAAGGATAATA-ATGATTTTCTTTTTGCATG-GAAATCTTTT
* * * * * * *
72655 CTTTGCCTTATTTACCTTAAAATCAATGTTCATCCCTTAAATGAGGCAAGCGTTGTTTCTCATAA
387 CTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCATAA
72720 CAG-TCTCCATTCTTTTCAAAATTAA
452 CAGTTC-CCATTCTTTTCAAAATTAA
*
72745 GAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGATGCAAAAAAAGC
1 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGC
* * * * *
72810 TTCTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGT
66 TTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTA-GAATAGT
* * * * * * * * * * *
72874 CAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATTGTCTTGTCATTAGGATACACA
130 CATACTAAACCATGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACG
* * * * * * * ** * *
72939 ATTTTAACGCTTCGGTTTCGCAAGAAAGGCTTTTTTCCAATCAGTTTTTGTAAAGTCTAACTTCA
195 ATATTGATGCTTTGGTTTTGAAAGAAAGGC-TTCTTCCCCTCAATTTTTGTAAAGTCTAACTTCG
* * * * *
73004 TTCCTCAATTGAGGCAAACATGGATTCTAGTAATGGCCTTCATTCATTTTGTGATTAGGCACTAT
259 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
73069 AAACACAT
324 AAACACAT
73077 CCATCACAAG
Statistics
Matches: 703, Mismatches: 95, Indels: 19
0.86 0.12 0.02
Matches are distributed among these distances:
474 4 0.01
475 329 0.47
476 117 0.17
477 253 0.36
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGC
TTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTC
ATACTAAACCATGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGA
TATTGATGCTTTGGTTTTGAAAGAAAGGCTTCTTCCCCTCAATTTTTGTAAAGTCTAACTTCGTG
CCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTTCACATTAGGATAAAGGATAATAATGATTTTCTTTTTGCATGGAAATCTTTTCTTT
GCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCATAACAGT
TCCCATTCTTTTCAAAATTAA
Found at i:73427 original size:370 final size:371
Alignment explanation
Indices: 72745--73445 Score: 1014
Period size: 370 Copynumber: 1.9 Consensus size: 371
72735 TCAAAATTAA
* * *
72745 GAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGATGCAAAAAAAGC
1 GAACCAAAAACACATTCCCTTAATTAGGATACAAGACATTGATGCATTGGTGATGCAAAAAAAGA
72810 TTCTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTC
66 TTCTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTC
* * * * *
72875 AAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATTGTCTTGTCATTAGGATACACAA
131 AAACTAAACCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAA
* * * *
72940 TTTTAACGCTTCGGTTTCGCAAGAAAGGCTTTTTTCCAATCAGTTTTTGTAAAGTCTAACTTCAT
196 TATTAACGCTTCGGTTTCGAAAGAAAGGCTTTCTTCCAACCAGTTTTTGTAAAGTCTAACTTCAT
* * * *
73005 TCCTCAATTGAGGCAAACATGGATTCTAGTAATGGCCTTCATTCATTTTGTGATTAGGCACTATA
261 GCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATA
73070 AACACATCCATCACAAGCATCGATTCTCGCAACTGTCTCCATTCTT
326 AACACATCCATCACAAGCATCGATTCTCGCAACTGTCTCCATTCTT
*
73116 GAACCAAAAACACATTCCCTTAATTAGGATACATGACATTGATGCATTGGTGATGCAAAAAAA-A
1 GAACCAAAAACACATTCCCTTAATTAGGATACAAGACATTGATGCATTGGTGATGCAAAAAAAGA
* * * *
73180 TTTTCTTGCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TGGAATAGT
66 TTCTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAGAGT
* * * * * * * *
73244 CATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAGCGTAGTCTTCTCATAAGGATGCACG
130 CAAACTAAACCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACA
* * * * ** * *
73309 ATATTGATGCTTTGGCTTT-TAAAGAAAGGCTTTCTTCCCCCCTA-TTTTTGTAATGTCTGACTT
195 ATATTAACGCTTCGG-TTTCGAAAGAAAGGCTTTCTTCCAACC-AGTTTTTGTAAAGTCTAACTT
73372 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
258 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
73437 ATAAACACA
323 ATAAACACA
73446 ATCTTCACAT
Statistics
Matches: 290, Mismatches: 37, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
369 1 0.00
370 225 0.78
371 64 0.22
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (371 bp):
GAACCAAAAACACATTCCCTTAATTAGGATACAAGACATTGATGCATTGGTGATGCAAAAAAAGA
TTCTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTC
AAACTAAACCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAA
TATTAACGCTTCGGTTTCGAAAGAAAGGCTTTCTTCCAACCAGTTTTTGTAAAGTCTAACTTCAT
GCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATA
AACACATCCATCACAAGCATCGATTCTCGCAACTGTCTCCATTCTT
Found at i:73909 original size:846 final size:849
Alignment explanation
Indices: 72267--74779 Score: 3496
Period size: 846 Copynumber: 3.0 Consensus size: 849
72257 TTTTTAAGAT
*
72267 TGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGACGTAAAAAA
1 TGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAA
* * * *
72332 AGCTTTTCTTACCGCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATA
66 AGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * * * *
72397 CTCATGCTAAACCATGTTCTTTTCAGGATTAGGCCCCATAAATGTAGTCTTCTTATAAGGATGCA
131 GTCATACTAAACCATGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* * *
72462 CGATATTGATACTTTGG-TTTTGAAAGAAAGGCTTCCTTGCCCTCAATTTTTGTAAAGTCTGACT
196 CGATATTGATGCTTTGGCTTTT-AAAGAAAGGCTTCCTT-CCCCCTATTTTTGTAAAGTCTGACT
** * * *
72526 TTGTGCCTCAAATGAGACGAACATTGATTCTA-TAATGATCTTCATTCATTTTGTGATTAGGCAC
259 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
* *
72590 TATAAACACATTC-TCTGCATTAGGATAAAGGATAAAGATGATTTTCTTTTGCAGTGAAATCTTT
324 TATAAACACATTCTTC-ACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA-TGAAATCTTT
** * * * *
72654 TCTTTGCCTTATTTACCTTAAAATCAATGTTCATCCCTTAAATGAGGCAAGCGTTGTTTCTCATA
387 TCTTTGCCTTATTTACCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATTGATTCTCATA
* * *
72719 ACAGTCTCCATTCTTTTCAAAATTAAGAACCAAAAACACATTCCCTTCATTAGGATACAAGACAT
452 ACAGTC-CCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
*
72784 TGATGCTTTGGTGATGCAAAAAAAGCTTCTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCT
516 TGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCT
72849 CTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAA
581 CTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAA
* * * * * * * * * *
72914 CATTGTCTTGTCATTAGGATACACAATTTTAACGCTTCGGTTTCGCAAGAAAGGCTTTTTTCCAA
646 CATTATCTTCTCATAAGGATACACAATATTGATGCTTCAGTTTTGAAAGAAAGGCTTTTTTCCCA
* * * * *
72979 TCAGTTTTTGTAAAGTCTAACTTCAT-TCCTCAATTGAGGCAAACATGGATTCTAGTAATGGCCT
711 CCAATTTTTGTAAAGTCTGACTTCATGT-CTCAAATGAGGCAATCATGGATTCTAGTAATGGCCT
*
73043 TCATTCATTTTGTGATTAGGCACTATAAACACATCCATCACAAGCATCGATTCTCGCAACTGTC-
775 TCATTCATTTTGTGATTAGGCACTATAAACACATCCATCACAAGCATCGATTCTCGCAACTATCA
73107 TC-C-ATTC-
840 TCTCTATTCA
* * * *
73114 T-TGAACCAAAAACACATTCCCTTAATTAGGATACATGACATTGATGCATTGGTGATGCAAAAAA
1 TGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAA
* * *
73178 A-ATTTTCTTGCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTGGAATA
66 AGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* *
73242 GTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAGCGTAGTCTTCTCATAAGGATGCA
131 GTCATACTAAACCATGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* *
73307 CGATATTGATGCTTTGGCTTTTAAAGAAAGGCTTTCTTCCCCCCTATTTTTGTAATGTCTGACTT
196 CGATATTGATGCTTTGGCTTTTAAAGAAAGGCTTCCTT-CCCCCTATTTTTGTAAAGTCTGACTT
73372 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
260 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
* * *
73437 ATAAACACAATCTTCACATTAGG-TCAAAGGATAATGATGAATTTCTTTTGCATGAAAATATTTT
325 ATAAACACATTCTTCACATTAGGAT-AAAGGATAATGATGATTTTCTTTTGCATG-AAATCTTTT
* * * * *
73501 CTTCGCCTTATTTACCTTCAAATCAAAATTCATCCCATAAATAAGACAAGCATCGATCCTCATAA
388 CTTTGCCTTATTTACCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATTGATTCTCATAA
* * *
73566 CAGTTCCCATTATTTTCAAGATTGGGAATCAAAAACACATTCCCTTCATTAGGATACATGACATT
453 CAG-TCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * *
73631 GACGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTTGTCTC
517 GATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTC
*
73696 TTAAATAAAACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAAC
582 TTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAAC
* *
73761 ATTATCCTCTCATAAGGATACACAATATTGATGCTTCAGTTTTGGAAGAAAGGCTTTTTTCCCAC
647 ATTATCTTCTCATAAGGATACACAATATTGATGCTTCAGTTTTGAAAGAAAGGCTTTTTTCCCAC
* * * *
73826 CAATTTCTATAAAGTCTGACTTCGTGTCTCAAATGAGGCAATCAAGGATTCTAGTAATGGCCTTC
712 CAATTTTTGTAAAGTCTGACTTCATGTCTCAAATGAGGCAATCATGGATTCTAGTAATGGCCTTC
** * * * * * * *
73891 ACACAATTTGTAATTAGGCTCTATAAAAACATTCTTCACAAGCATCGATTCTCGTAACTATCATC
777 ATTCATTTTGTGATTAGGCACTATAAACACATCCATCACAAGCATCGATTCTCGCAACTATCATC
*
73956 TCTTTTTTTTTCAAGAA
842 TC-----TATTC----A
* *
73973 TGGGAACCAAAAACACATACCCTTTATTAGGATACATGACATTGATGCTTTGGTAACGCAAAAAA
1 TGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAA
* *
74038 AGCTTTTCTTACCACCGTTTTTTCTAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAATA
66 AGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
** * * * * * *
74103 GTCATACTAGTCCCTGTTTTTTTCAAGATTAGGCACCGTAAACGTAGTCTTCTCATAAGGATACC
131 GTCATACTAAACCATGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* *
74168 CGATATTGATGCTTTGGCTTTGAAAGAAAGGCTTCCTT-CACCTAATTTTTGTAAAGTCTGACTT
196 CGATATTGATGCTTTGGCTTTTAAAGAAAGGCTTCCTTCCCCCT-ATTTTTGTAAAGTCTGACTT
* * *
74232 CATGCCTCAAAAGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGATTAGGCACT
260 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
74297 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGCAAATCTTTTC
325 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG-AAATCTTTTC
*
74362 TTTGCCTTATTTACCTTAAAATCAAACTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAAC
389 TTTGCCTTATTTACCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATTGATTCTCATAAC
74427 AGTCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
454 AGTCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * *
74492 TGCTTTGGTAATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTC
519 TGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTT
* * * * * * * * *
74557 AAATAAGAGAAAC-TAGAATAGTCATACTATTCCATGTTCTTTTCAGGATTAGGCACCGTAAAC-
584 AAATAAGACAAACAT-GAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACA
* * * * * * *
74620 GTAGTCTTCTCATAAGGATATCA-GATATTGATGTTTTA-CTTTGAAAGAAAGGCTTTCTT-CCT
648 TTA-TCTTCTCATAAGGATA-CACAATATTGATGCTTCAGTTTTGAAAGAAAGGCTTTTTTCCCA
* ** * *
74682 CCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAAACAAAT-ATGGATTCTAGTAATGACCA
711 CCAATTTTTGTAAAGTCTGACTTCATGTCTCAAATGAGGC-AATCATGGATTCTAGTAATGGCCT
*
74746 TCATTTATTTTGTGATTAGGCACTATAAACACAT
775 TCATTCATTTTGTGATTAGGCACTATAAACACAT
74780 TCTTCACTTT
Statistics
Matches: 1469, Mismatches: 169, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
845 198 0.13
846 541 0.37
847 8 0.01
848 1 0.00
854 3 0.00
857 80 0.05
858 24 0.02
859 202 0.14
860 261 0.18
861 151 0.10
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34
Consensus pattern (849 bp):
TGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAA
AGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
GTCATACTAAACCATGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
CGATATTGATGCTTTGGCTTTTAAAGAAAGGCTTCCTTCCCCCTATTTTTGTAAAGTCTGACTTC
ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTA
TAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAATCTTTTCTT
TGCCTTATTTACCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATTGATTCTCATAACAG
TCCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATTA
TCTTCTCATAAGGATACACAATATTGATGCTTCAGTTTTGAAAGAAAGGCTTTTTTCCCACCAAT
TTTTGTAAAGTCTGACTTCATGTCTCAAATGAGGCAATCATGGATTCTAGTAATGGCCTTCATTC
ATTTTGTGATTAGGCACTATAAACACATCCATCACAAGCATCGATTCTCGCAACTATCATCTCTA
TTCA
Found at i:75233 original size:475 final size:471
Alignment explanation
Indices: 73963--80881 Score: 8028
Period size: 476 Copynumber: 14.7 Consensus size: 471
73953 ATCTCTTTTT
* * *
73963 TTTTCAAGAATGGGAACCAAAAACACATACCCTTTATTAGGATACATGACATTGATGCTTTGGTA
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
*
74028 ACGCAAAAAAAGCTTTTCTTACCACCGTTTTTTCTAGAATCAAAGTTTGTCTCTCAAATAAGAGA
66 AC-CAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
*
74093 AACTAGAATAGTCATACTAGTCCCTGTTTTTTTCAAGATTAGGCACCGTAAACGTAGTCTTCTCA
130 AACTAGAATAGTCATACTAGTCCCTGTTTTTTT-AGGATTAGGCACCGTAAACGTAGTCTTCTCA
* *
74158 TAAGGATACCCGATATTGATGCTTTGGCTTTGAAAGAAAGGCTTCCTT-CACCTAATTTTTGTAA
194 TAAGGATACACGATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCT-ATTTTTGTAA
*
74222 AGTCTGACTTCATGCCTCAAAAGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTG
257 AGTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTG
* * *
74287 ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGC
322 ATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGA
* *
74352 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAACTTCATCCCTTAAATAAGACAAGCATTGA
387 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
74417 TTCTCATAACAGTCCCATTC
452 TTCTCATAACAGTCCCATTC
*
74437 TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
* *
74502 ATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
66 A-CCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
* * *
74567 AACTAGAATAGTCATACTATTCCATGTTCTTTTCAGGATTAGGCACCGTAAACGTAGTCTTCTCA
130 AACTAGAATAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
** * *
74632 TAAGGATATCA-GATATTGATGTTTTACTTTGAAAGAAAGGCTTTCTTCCTCCAATTTTTGTAAA
194 TAAGGATA-CACGATATTGATGTTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAAA
* *
74696 GTCTGACTTCATGCCTCAAATGAAACAAATATGGATTCTAGTAATGACCATCATTTATTTTGTGA
258 GTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGA
* ** * *
74761 TTAGGCACTATAAACACATTCTTCACTTTTTGATAAAGGATAATGATGATTTTTTTTTGCACGAA
323 TTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGAA
* *
74826 AATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAGGCATCGAT
388 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* *
74891 TCTCATAACTGTCTGCATTC
453 TCTCATAACAGTC-CCATTC
* *
74911 TTTTCAAGATTGGGAACCAAAAACACATTCCCCTTCATTAGCATACATGACATTGATGCTTTAGT
1 TTTTCAAGATTGGGAACCAAAAACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * ** * * *
74976 GACCAAAAAAAATCTTTTCTTACCACTATTTTTGATAGAATCAAAATTTATCTCTCAAATAAGAG
65 AACC-AAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAG
* ** * *
75041 AAAATAGAATAGTCATACTAGTCCCTGTTTTTTTAGGATTAGGCACTATAAACGTAGTTTTCTTA
129 AAACTAGAATAGTCATACTAGTCCCTGTTTTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
* * * * *
75106 TAAGGACACACGATATTGATGATTTGGTTTTGAATGAAAGGCTTTCTTCCCCCTATTTTTGTGAA
194 TAAGGATACACGATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAAA
* * * *
75171 GTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAGTGACCTTCATTCATTTTGTGA
258 GTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGA
* * *
75236 TTAGGCACTATAAACACAATCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCGTGGA
323 TTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGAA
* *
75301 AATCTTTTCTATGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGAT
388 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
**
75366 TCTTGTAACAGT--CA--C
453 TCTCATAACAGTCCCATTC
** ***
75381 ----C---ATT--------------C-TT---TTCATTAGGATACATGACATTATTGCTTTGAAG
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
* ** * * * *
75421 ACTCAAGAAAAGCTTTTCTTACCATTGTTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACA
66 AC-CAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
* * * * * * * *
75486 AACGT-GAAGAGTTATACTAATCCCTATTCTTTTCAAGATTTGGCACCGTAAACATAGTCTTCTC
130 AAC-TAGAATAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTC
* * * * *
75550 ATAAGGATACACGATATTGATGATTTTG-TTTCGCATGAAAGGCTTTTTTCCCACC-AGTTTTTC
193 ATAAGGATACACGATATTGATG-TTTGGCTTT-GAAAGAAAGGCTTTCTT-CCACCTA-TTTTTG
* * * * * * * *
75613 AAAAGTCTAACTTCGTGCCTCAATTCAGACAAACATGGATTAC-AGTAATAACCTTCATTCATTT
254 TAAAGTCTGACTTCATGCCTCAAATGAGACAAATATGGATT-CTAGTAATGACCATCATTCATTT
* * *
75677 TGTGGTTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
318 TGTGATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGC
* * * *
75742 ATCAAAATTTTTTCTTTGCCTTATTTACCTTAAAATTAAAGTTTATCCCTTAAATAAGACAAGCA
383 ATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * *
75807 TCGATTATCGTAACTA-TCTTCATTC
448 TCGATTCTCATAAC-AGTC-CCATTC
* * * * *
75832 TTTTCAAGATTGGGAACCAAAAACACGTTTCCTTCTTTAGGATACAAGACATT-ATTGCTTTGAT
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGT
** * * *
75896 GATGCAAAAAAAGCTATTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAATAG
65 -AACCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAG
* * * * * **
75961 AAACTAGAAGT-GTCATACTAATCCTTGTTCCTTTCAGGATTATGCACTATAAACGTAGTCTTCT
129 AAACTAGAA-TAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCT
* * * * * * *
76025 CATAACGATACATGATAATGATGCTTT-GATTTCGAAAGAAAGGTTTTCTTCCCCCCAATTTTTG
192 CATAAGGATACACGATATTGATG-TTTGGCTTT-GAAAGAAAGGCTTTCTT-CCACCTATTTTTG
* * * *
76089 TAAAGTCTGACTTCGTGACTCAAAATGAGACAAACATGGATTCAAGTAATGACCATCATTCATTT
254 TAAAGTCTGACTTCATGCCTC-AAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTT
* *
76154 TGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
318 TGTGATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGC
*
76219 ATGCAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
383 ATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
76284 TCGATTCTCATAACAGTCCCATTC
448 TCGATTCTCATAACAGTCCCATTC
*
76308 TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
* *
76373 ACGCAAAAAAAGCTTTTCTTGCCACCGTTTTTTATAGAATCAAAGTTTATCTCTCAAATAAGAGA
66 AC-CAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
*
76438 AACTAGAATAGTCATACTAGTCCCTGTTCTTTTTAAGATTAGGCACCGTAAACGTAGTCTTCTCA
130 AACTAGAATAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
* * * * *
76503 TAAGGATAC-CAAATATTGATGCTTTAGTTTTGAAAGAAAGGCTTTCTTCCTCCAATTTTTGTAA
194 TAAGGATACAC-GATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAA
* * *
76567 AGTCTGACTTCATGCCTCAAACGAAACAAATATGGATTCTAGTAATGACCATCATTTATTTTGTG
257 AGTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTG
* ** * *
76632 ATTAGGCACTATAAACACATTCTTCACTTTTGGATAAAGGATAATGATGATTTTTTTTTGCACGA
322 ATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGA
* *
76697 AAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAGGCATCGA
387 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* *
76762 TTCTCATAACTGTCTGCATTC
452 TTCTCATAACAGTC-CCATTC
* *
76783 TTTTCAAGATTGGGAACCAAAAACACATTCCCCTTCATTAGCATACATGACATTGATGCTTTAGT
1 TTTTCAAGATTGGGAACCAAAAACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * ** * * *
76848 GACCAAAAAAAATCTTTTCTTACCACTATTTTTGATAGAATCAAAATTTATCTCTCAAATAAGAG
65 AACC-AAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAG
* * ** * *
76913 AAAATAGAATAGTCATACTAGTCCCTGCTTTTTTAGGATTAGGCACTATAAACGTAGTTTTCTTA
129 AAACTAGAATAGTCATACTAGTCCCTGTTTTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
* * * * *
76978 TAAGGACACACGATATTGATGATTTGGTTTTGAATGAAAGGCTTTCTTCCCCCTATTTTTGTGAA
194 TAAGGATACACGATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAAA
* * * *
77043 GTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAGTGACCTTCATTCATTTTGTGA
258 GTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGA
* * *
77108 TTAGGCACTATAAACACAATCTTCACATTACGATAAAGGATAATGATGATTTTCTTTTGCATGCA
323 TTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGAA
77173 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
388 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
77238 TCTCATAACAGTCCCATTC
453 TCTCATAACAGTCCCATTC
*
77257 TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
* *
77322 ACGCAAAAAAAGCTTTTCTTGCCACCGTTTTTTATAGAATCAAAGTTTATCTCTCAAATAAGAGA
66 AC-CAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
*
77387 AACTAGAATAGTCATACTAGTCCCTGTTCTTTTTAAGATTAGGCACCGTAAACGTAGTCTTCTCA
130 AACTAGAATAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
* * * * * *
77452 TAAGGATAC-CAAATATTGATGCTTTAGTTTTGAAAGATAGGCTTTCTTCCTCCAATTTTTGTAA
194 TAAGGATACAC-GATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAA
* *
77516 AGTCTGACTTCATGCCTCAAATGAAACAAATATGGATTCTAGTAATGACCATCATTTATTTTGTG
257 AGTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTG
* ** * * *
77581 ATTAGGCACTATAAACACATTCTTCACTTTTGGATAAAGGAAAATGATGATTTTTTTTTTGCACG
322 ATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGA-TTTTATTTTGCATG
* *
77646 AAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAGGCATCG
386 AAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* **
77711 ATTCTCATAACTGTCTGTATTC
451 ATTCTCATAACAGTC-CCATTC
* * *
77733 TTTTCAAGATTGGGAACCAAAAACAAATTCCCTTTCATGAGGATACATGGCATTGATGCTTTGGT
1 TTTTCAAGATTGGGAACCAAAAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGT
* * ** * * *
77798 GACCAAAAAAAATCTTTTCTTACCACTATTTTTGATAGAATCAAAATTTATCTCTCAAATAAGAG
65 AACC-AAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAG
* * * ** * *
77863 AAAATAGAATAGTCATACTGGTCCCTGTTTTTTTAGGGTTAGGCACTATAAACGTAGTTTTCTTA
129 AAACTAGAATAGTCATACTAGTCCCTGTTTTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
* * * *
77928 TAAGGATACACGATATTGATGCTTTGGGTTTGAATGAAAGGCTTTCTTCCCCCTATTTTTGTGAA
194 TAAGGATACACGATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAAA
* * * *
77993 GTCTGACTTCATGCCTCAAATGAGACAAACATGGATTCCAGTAGTGACCTTCATTCATTTTGTGA
258 GTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGA
* * * * *
78058 TTAGGCACTATAAACACAATCTTCCCATTACGATAAAGGATAATGATGATTTTTTTTTGCGTGGA
323 TTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGAA
* *
78123 AATCTTGTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGAT
388 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
**
78188 TCTTGTAACAGT--CA--C
453 TCTCATAACAGTCCCATTC
** ***
78203 ----C---ATT--------------C-TT---TTCATTAGGATACATGACATTATTGCTTTGAAG
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
** * * * *
78243 ACTCAAGAAAAAGCTTTTCTTACCATTGTTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGAC
66 AC-CAA-AAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAG
* * * * * * * * **
78308 AAACGTA-AAGAGTTATACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAATATAGTCTTCT
129 AAAC-TAGAATAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCT
* * * * * * * *
78372 TATAAGGATACACGATATTGATGCTTTTGTTTTGCATGAAATGCTTTTTTCCCACC-AGTTTTTC
192 CATAAGGATACACGATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTT-CCACCTA-TTTTTG
* * * * * * * * *
78436 AAAAGTCTAACTTCGTGCCTCAATTCAGACAAACATGGATTATAGTAATAACCTTCATTCATTTT
254 TAAAGTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTT
* * *
78501 GTGGTTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA
319 GTGATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCA
* *
78566 TCG-AAATTTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTC-TCCCTTAAATCAGACAAGC
384 T-GAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGC
* * * * *
78629 ATTGATTATCGTAACTGTCTTCATTC
447 ATCGATTCTCATAACAGTC-CCATTC
** * * * * *
78655 TTTTCGGGATTGGGAACCAAAAACACGTTTCCTTCTTTAGGATACAAGACATT-ATTGCTTTGAT
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGT
* * * * *
78719 GATGCAAAAAAAAGCTATTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAATA
65 -A-ACCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGA
* * * * * * **
78784 GAAACTAGAAGT-GTCATTCTAATCCTTGTTCCTTTCAGGATTACGCACTATAAACGTAGTCTTC
128 GAAACTAGAA-TAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTC
* * * *
78848 TCATAACGATACACGATATTTATGCTTTGG-TTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTT
191 TCATAAGGATACACGATATTGATG-TTTGGCTTT-GAAAGAAAGGCTTTCTT-CCACCTATTTTT
* * *
78912 GTAAAGTCTGACTTCGTGCCTCAAAATGAGACAAACATGGATTCTAGTAATGACCATCATTTATT
253 GTAAAGTCTGACTTCATGCCTC-AAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATT
* * *
78977 TTGTTATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
317 TTGTGATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTG
*
79042 CATGCAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
382 CATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
79107 ATTGATTCTCATAATAGTCCCATTC
447 ATCGATTCTCATAACAGTCCCATTC
* * *
79132 TTTTCAAGATTAGGAACCAAAAAGACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTA
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
* *
79197 ACGCAAAAAAAGCTTTTCTTGCCACTGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
66 AC-CAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
* * *
79262 AACTAGAATAGTCATACTAGTCCCTGTTCTTTTCAGGATTAGGCACCGTAAATGTAGTTTTCTCA
130 AACTAGAATAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
* * * *
79327 TAAGGATAC-CGGATATTGATGCTTTAGTTTTGAAAGAAAGGCTTTCTTCCTCCAATTTTTGTAA
194 TAAGGATACAC-GATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAA
* *
79391 AGTCTGACTTCATGCCTCAAATGAAACAAATATGGATTCTAGTAATGACCATCATTTATTTTGTG
257 AGTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTG
* ** * * *
79456 ATTAGGCACTATAAACACATTCTTCACTTTTGGATAAAGGATAATGATGTTTTTTTTTTTGCACG
322 ATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATG-ATTTTATTTTGCATG
* * *
79521 AAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAACAGGCATCG
386 AAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
79586 ATTCTCATAACTGTCTGCATTC
451 ATTCTCATAACAGTC-CCATTC
*
79608 TTTTCAAGATTGGGAACCAAAAACACATTCCCCTTCATGAGGATACATGACATTGATGCTTTGGT
1 TTTTCAAGATTGGGAACCAAAAACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * ** * * *
79673 GACAAAAAAAAATCTTTTCTTACCACTATTTTTGATAGAATCAAAATTTATCTCTCAAATAAGAG
65 AAC-CAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAG
* ** * *
79738 AAAATAGAATAGTCATACTAGTCCCTGTTTTTTTAGGATTAGGCACTATAAACGTAGTTTTCTTA
129 AAACTAGAATAGTCATACTAGTCCCTGTTTTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCA
* * * * *
79803 TAAGGATACACAATATTGATGCTTTGGTTTTGAATGAAAGGCTTTCTTCCCCCTATTTTTGTGAA
194 TAAGGATACACGATATTGATG-TTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAAA
* * * * *
79868 GTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCCAGTAGTGACCTTCATTCATTTTGTGA
258 GTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGA
* * * * *
79933 TTAGTCACTATAAACACAATCTTCACATTACGATAAAGGATAATGATGATTTTCTTTTGCGTGGA
323 TTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGAA
79998 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-A--A--G--
388 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
80056 --T-AT--C-G----ATTC
453 TCTCATAACAGTCCCATTC
* * ** ** ***
80065 --TT---G--T---AA-CAGACAC-CATTCTTTTCATTAGGATACATGACATTATTGCTTTGAAG
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
* ** * * *
80118 ACTCAAGAAAAGCTTTTCTTACCATTGTTTTTTATAGAATCAAAGTTTGTGTCTTAAATAAGACA
66 AC-CAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGA
* * * * * * * * **
80183 AACGTA-AAGAGTTATACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAATATAGTCTTCTC
130 AAC-TAGAATAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTC
* * * *
80247 ATAAGGATACACAATATTGATGCTTTTG-TTTCGCATGAAAGGCTTT-TTCCCCACC-AGTTTTT
193 ATAAGGATACACGATATTGATG-TTTGGCTTT-GAAAGAAAGGCTTTCTT--CCACCTA-TTTTT
** * ** * * * * *
80309 CAAAAGTCTAACTTTGTGCCTCAATTCAGACAAACATGGATTATAGTAATAACC-TCCATTCATT
253 GTAAAGTCTGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCAT-CATTCATT
* * *
80373 TTGTGGTTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
317 TTGTGATTAGGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTG
* * *
80438 CATCG-AAATTTTTTCTTTGCCTTGTTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAG
382 CAT-GAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * *
80502 CATCGATTATCGTAACTGTCTTCATTC
446 CATCGATTCTCATAACAGTC-CCATTC
* * * * *
80529 TTTTCGAGATTGGGAACCAAAAACACGTTTCCTTCTTTAGGATACAAGACATT-ATTGCTTTGAC
1 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTG--
** * * *
80593 G-ATGCAAAAAAAGCCATTT-TTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAT
63 GTAACCAAAAAAAG-CTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAG
* * * * * **
80656 AGAAACTAGAAGT-GTCATACTAATCCTTGTTCCTTTCAGGATTACGCACTATAAACGTAGTCTT
127 AGAAACTAGAA-TAGTCATACTAGTCCCTGTT-TTTTTAGGATTAGGCACCGTAAACGTAGTCTT
* * * * *
80720 CTCATAACGATACATGATATTGATGCTTTGG-TTTCGAAAGAAAGGCTTTTTTCCCACCAATTTC
190 CTCATAAGGATACACGATATTGATG-TTTGGCTTT-GAAAGAAAGGCTTTCTT-CCACCTATTTT
* * * * * * * *
80784 TGTAAAGTCTAACTTCATGCCTCAATTGATG-CAAACAAGGATTCTAGTAATGGCCTTCACTCAA
252 TGTAAAGTCTGACTTCATGCCTCAAATGA-GACAAATATGGATTCTAGTAATGACCATCATTCAT
*
80848 TTTGTAATTAGGCACTATAAACACATTCTTCACA
316 TTTGTGATTAGGCACTATAAACACATTCTTCACA
80882 AGCATCGATT
Statistics
Matches: 5584, Mismatches: 683, Indels: 354
0.84 0.10 0.05
Matches are distributed among these distances:
444 243 0.04
445 217 0.04
446 450 0.08
447 196 0.04
448 8 0.00
449 4 0.00
450 3 0.00
451 2 0.00
452 2 0.00
455 4 0.00
456 2 0.00
457 4 0.00
458 4 0.00
459 4 0.00
462 1 0.00
463 7 0.00
464 4 0.00
465 2 0.00
466 5 0.00
469 1 0.00
470 3 0.00
471 1 0.00
472 5 0.00
473 350 0.06
474 776 0.14
475 1049 0.19
476 1382 0.25
477 679 0.12
478 175 0.03
479 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (471 bp):
TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTA
ACCAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGAA
ACTAGAATAGTCATACTAGTCCCTGTTTTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCATA
AGGATACACGATATTGATGTTTGGCTTTGAAAGAAAGGCTTTCTTCCACCTATTTTTGTAAAGTC
TGACTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGATTA
GGCACTATAAACACATTCTTCACATTACGATAAAGGATAATGATGATTTTATTTTGCATGAAAAT
CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
CATAACAGTCCCATTC
Found at i:82324 original size:245 final size:245
Alignment explanation
Indices: 81887--82364 Score: 893
Period size: 245 Copynumber: 2.0 Consensus size: 245
81877 TAAGAATCTG
81887 AAAAATATGTTTAATCTGAAAAATATGAATGTCTGCCCCCTCCAAATCTATTTACAAGAGCTTAT
1 AAAAATATGTTTAATCTGAAAAATATGAATGTCTGCCCCCTCCAAATCTATTTACAAGAGCTTAT
81952 ATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACT
66 ATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACT
**
82017 CTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCTTAAACCAAGTCACAACCAGCAG
131 CTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAACCAAGTCACAACCAGCAG
*
82082 GCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCACACTCTCACAC
196 ACCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCACACTCTCACAC
* *
82132 AAAAATGTGTTTAATCTGAAAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTAT
1 AAAAATATGTTTAATCTGAAAAATATGAATGTCTGCCCCCTCCAAATCTATTTACAAGAGCTTAT
*
82197 TTATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACT
66 ATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACT
*
82262 CTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAG
131 CTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAACCAAGTCACAACCAGCAG
82327 ACCCTTTATTACAAAATAACCCAAGTCCTAATTCAATC
196 ACCCTTTATTACAAAATAACCCAAGTCCTAATTCAATC
82365 CATTGGAGCC
Statistics
Matches: 226, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
245 226 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.27
Consensus pattern (245 bp):
AAAAATATGTTTAATCTGAAAAATATGAATGTCTGCCCCCTCCAAATCTATTTACAAGAGCTTAT
ATATGCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACT
CTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAACCAAGTCACAACCAGCAG
ACCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCACACTCTCACAC
Found at i:89912 original size:42 final size:42
Alignment explanation
Indices: 89857--89975 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
89847 TTCTTCTCTC
* *
89857 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
89899 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
89941 CTCCTCCTATCATCCCTCCTCTCTCTGCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
89976 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:89916 original size:12 final size:11
Alignment explanation
Indices: 89890--89965 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
89880 TCTATTATCT
*
89890 CTCCTGTCTCTC
1 CTCCTATCTC-C
89902 CTCCTATCATCC
1 CTCCTATC-TCC
89914 CTCCTATCT--
1 CTCCTATCTCC
*
89923 CTACTATCT--
1 CTCCTATCTCC
*
89932 CTCCTGTCTCTC
1 CTCCTATCTC-C
89944 CTCCTATCATCC
1 CTCCTATC-TCC
*
89956 CTCCTCTCTC
1 CTCCTATCTC
89966 TGCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:89917 original size:24 final size:24
Alignment explanation
Indices: 89881--89966 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
89871 CCTCCTCTCT
* *
89881 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
89905 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
89926 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
89947 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
89967 GCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:89941 original size:18 final size:18
Alignment explanation
Indices: 89872--89942 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
89862 CCTGTCATCC
* *
89872 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
89890 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
89912 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
89932 CTCCTGTCTCT
1 CTCCTGTCTCT
89943 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:93389 original size:18 final size:18
Alignment explanation
Indices: 93368--93438 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
93358 CCTGTCATCC
93368 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATTATCT
*
93386 CTCCTGTCTCTCCTCTTATCAT
1 CTCC--TCTCT-CTATTATC-T
* *
93408 CCCTCCTATCTCTACTATCT
1 --CTCCTCTCTCTATTATCT
*
93428 CTCCTGTCTCT
1 CTCCTCTCTCT
93439 CCTCCTATCG
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
18 14 0.33
20 6 0.14
21 13 0.31
22 5 0.12
24 4 0.10
ACGTcount: A:0.10, C:0.42, G:0.03, T:0.45
Consensus pattern (18 bp):
CTCCTCTCTCTATTATCT
Found at i:93408 original size:42 final size:42
Alignment explanation
Indices: 93353--93471 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
93343 TTCTTCTCTC
* *
93353 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
93395 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
93437 CTCCTCCTATCGTCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
93472 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:93456 original size:24 final size:23
Alignment explanation
Indices: 93386--93462 Score: 65
Period size: 24 Copynumber: 3.5 Consensus size: 23
93376 TCTATTATCT
*
93386 CTCCTGTCTCTCCTCTTATCATCC
1 CTCCTGTCTCTCCTCCTATC-TCC
* *
93410 CTCC--TATCT-CTACTATCT--
1 CTCCTGTCTCTCCTCCTATCTCC
93428 CTCCTGTCTCTCCTCCTATCGTCC
1 CTCCTGTCTCTCCTCCTATC-TCC
*
93452 CTCCTCTCTCT
1 CTCCTGTCTCT
93463 TCTTTCTCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 4 0.10
20 5 0.12
21 13 0.32
22 5 0.12
24 14 0.34
ACGTcount: A:0.08, C:0.47, G:0.04, T:0.42
Consensus pattern (23 bp):
CTCCTGTCTCTCCTCCTATCTCC
Found at i:96515 original size:385 final size:385
Alignment explanation
Indices: 95800--96524 Score: 1084
Period size: 385 Copynumber: 1.9 Consensus size: 385
95790 GTTTTCATCA
* * * *
95800 GGAACCAAAAACACGTTTCCTTCTTTAGGATACAAGACATTATTGCTTTGATGATGCAAAAAAAG
1 GGAACCAAAAACACATTCCCTTCTTTAGGATACAAGACATTATTGCTTTGATAACGCAAAAAAAG
* *
95865 CTATTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAATAGAAACTAGAAGTGT
66 CTATTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAAGTGT
*** * * * *
95930 CATACTAATCTTTGTTTCTTTCAGGATTACGCACTATAAACGTAGTCTTCTCATAACGATACATG
131 CATACTAATCCCCGTTTCTTTAAGGATTACGCACCATAAACGTAGTCTTCTCATAAAGATACACG
* *
95995 ATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTCTGTAAAGTCTAACTTCG
196 ATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTCTGTAAAGTCTAACTTCA
* *
96060 TGCCTCAATTGATGCAAACAAGGATTCTAGTAATGGCCTTCACTCAATTTGTAATTAGGCACTAA
261 TGCCTCAATTGATGCAAACAAGGATTCTAGTAATGACCATCACTCAATTTGTAATTAGGCACTAA
96125 AACACATTCTTCACAAGCATCGATTCTCGTAACTATCATCTCTTTTTTTTTTCAAGAATG
326 AACACATTCTTCACAAGCATCGATTCTCGTAACTATCATCTCTTTTTTTTTTCAAGAATG
*
96185 GGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTGA-TGCTTTGATAACGCAAAAAA
1 GGAACCAAAAACACATTCCCTTCT-TTAGGATACAAGACATT-ATTGCTTTGATAACGCAAAAAA
*
96248 AGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAA-T
64 AGCTATTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAAGT
* * *
96312 AGTCATACTAGTCCCCGTTTTTTTAAGGATTAGGCACCATAAACGTAGTCTTCTCATAAAGATAC
129 -GTCATACTAATCCCCGTTTCTTTAAGGATTACGCACCATAAACGTAGTCTTCTCATAAAGATAC
* * *
96377 CCGATATTGATGCTTTGGCTTT-GAAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCTGAC
193 ACGATATTGATGCTTTGG-TTTCGAAAGAAAGGCTTTCTTCCCACCAATTTCTGTAAAGTCTAAC
* * * * *
96440 TTCATGCCTCAATTGA-GACAAATATGGATTCTAGTAATGACCATCATTCATTTTGTGATTAGGC
257 TTCATGCCTCAATTGATG-CAAACAAGGATTCTAGTAATGACCATCACTCAATTTGTAATTAGGC
96504 ACTATAAACACATTCTTCACA
321 ACTA-AAACACATTCTTCACA
96525 TTAGGATAAA
Statistics
Matches: 304, Mismatches: 30, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
383 1 0.00
384 79 0.26
385 220 0.72
386 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34
Consensus pattern (385 bp):
GGAACCAAAAACACATTCCCTTCTTTAGGATACAAGACATTATTGCTTTGATAACGCAAAAAAAG
CTATTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGAGAAACTAGAAGTGT
CATACTAATCCCCGTTTCTTTAAGGATTACGCACCATAAACGTAGTCTTCTCATAAAGATACACG
ATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTCTGTAAAGTCTAACTTCA
TGCCTCAATTGATGCAAACAAGGATTCTAGTAATGACCATCACTCAATTTGTAATTAGGCACTAA
AACACATTCTTCACAAGCATCGATTCTCGTAACTATCATCTCTTTTTTTTTTCAAGAATG
Found at i:96956 original size:236 final size:234
Alignment explanation
Indices: 96532--96994 Score: 622
Period size: 236 Copynumber: 2.0 Consensus size: 234
96522 ACATTAGGAT
* * * *
96532 AAAGGATAACGATGATTTTCTTTCACATGCAAATCTTTTTTTTGCCTTATTTACCTTAAAATAAA
1 AAAGGATAACAATGATTTTCTTTCACATGCAAATCTTTTCTTTACCCTATTTACCTTAAAATAAA
* *
96597 AGTAATCCCTTAAATAAGACAAGCATCAATTCTCATAACCGTCCCATTCTTTTCAAGATTAGGAA
66 AGTAATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATCAGGAA
**
96662 CCAAAAACACATTCCCTTTATTAGGATACAAGACATTAATGCTTTGGTGACGCAAAAAAAGCTTT
131 CCAAAAACACATTCCCTTTATTAGGATACAAGACATTAATGCTTTGAAGACGCAAAAAAAGCTTT
* *
96727 TCCTGCCCCCATTTTTGATAGAATCAAAGTTTCTCTGTC
196 TCCTACCACCATTTTTGATAGAATCAAAGTTTCTCTGTC
* ** * *
96766 AAAGGATAATAATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTACCTTAAAATCAA
1 AAAGGATAACAATGATTTTCTTTCACATGCAAATCTTTTCTTTACCCTATTTACCTTAAAATAAA
* * ** * *
96831 AGTTTATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCACCATTCTTTTCATGATCGGG
66 AG-TAATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTC-CCATTCTTTTCAAGATCAGG
* * * * *
96896 AACCAAAAACTCA-TCCCTTTCATTAGGATACATGACATTATTTCTTTGAAGACTCAAAAAAAGC
129 AACCAAAAACACATTCCCTTT-ATTAGGATACAAGACATTAATGCTTTGAAGACGCAAAAAAAGC
* ***
96960 TTTTCTTACCATTGTTTTTGATAGAATCAAAGTTT
193 TTTTCCTACCACCATTTTTGATAGAATCAAAGTTT
96995 GTCTCTTAAA
Statistics
Matches: 196, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
234 58 0.30
235 43 0.22
236 95 0.48
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.35
Consensus pattern (234 bp):
AAAGGATAACAATGATTTTCTTTCACATGCAAATCTTTTCTTTACCCTATTTACCTTAAAATAAA
AGTAATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCCCATTCTTTTCAAGATCAGGAA
CCAAAAACACATTCCCTTTATTAGGATACAAGACATTAATGCTTTGAAGACGCAAAAAAAGCTTT
TCCTACCACCATTTTTGATAGAATCAAAGTTTCTCTGTC
Found at i:98070 original size:475 final size:475
Alignment explanation
Indices: 96766--100074 Score: 4132
Period size: 476 Copynumber: 7.0 Consensus size: 475
96756 TTTCTCTGTC
* * *
96766 AAAGGATAATAATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTACCTTAAAATCAA
1 AAAGGATAATGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * * * *
96831 AGTTTATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCACCATTCTTTTCATGATCGGG
65 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * ** *
96896 AACCAAAAACTCA-TCCCTTTCATTAGGATACATGACATTATTTCTTTGAAGACTCAAAAAAAGC
130 AACCAAAAACACATTCCCTTT-ATTAGGATACAAGACATTATTGCTTTGGTGACGCAAAAAAAGC
* * *
96960 TTTTCTTACCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGT-GAAGAGT
194 TTTTCTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGT
* * * * *
97024 TATACTAATTCC-TATTCTTTTCAAGATTTGGCACCGTAAACATAGTCTACTCATAAGGATACAC
258 CATACTAA-TCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * * * *
97088 GATATTGATGCTTTGGTTTTGCATGAAAGGCTTT-TT-CCACCAGTTTTTATAAAGT-AG-CTGC
322 GATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTC
* ** * * *
97149 ATGCCT-AAATTCCGACAAACCTGGATTATAGTAATGACCTTCATTCATTTTGTGGTTAGGCACT
387 GTGCCTCAAA-TGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
97213 ATAAACACATTCTTCACATTAGGAT
451 ATAAACACATTCTTCACATTAGGAT
* *
97238 AAAGGATAATGATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTTCCTTATTTACCTTAAAATCA
1 AAAGGATAATGATGATTTT-TTTTGCATGA-AAATCTTTTCTTTGCCCTATTTACCTTAAAATCA
* * * * * **
97302 AAGTTCATACCGTAAATAAGACAAGCATCGATTATCGTAACTGTCTCCATACTTTTTGAGATTGG
64 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * *
97367 GAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTATTGGTTTGATGACGCAAAAAAAGC
129 GAACCAAAAACACATTCCCTTTATTAGGATACAAGACATTATTGCTTTGGTGACGCAAAAAAAGC
* * * *
97432 TATTCTTACCGTCGTTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAGAGACACTAGAAGT-GT
194 TTTTCTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA-TAGT
* * * * * * * *
97496 CATACTAATCCTCGTTCCTTTCAGGATTAAGCACTATAAACGTAGTCTTCTCATAACGAAACACG
258 CATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* *
97561 ATATTGATGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCG
323 ATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCG
97626 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
388 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
* *
97691 AAACACATTATTCAGATTAGGAT
453 AAACACATTCTTCACATTAGGAT
* *
97714 AGAGGATAATGATGATTGTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
1 AAAGGATAATGATGATT-TTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * * * *
97779 AGTTTATCCCTTAAATATGACAAGCATTGATTCT-GATAGCAGTC-CCATTCTTTTCAAGATTAG
65 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG-TAACAGTCTCCATTCTTTTCAAGATTGG
* *
97842 GAACCAAAAACATATTCCCTTTATTAGGATACAAGGCATTGA-TGCTTTGGT-AGCGCAAAAAAA
129 GAACCAAAAACACATTCCCTTTATTAGGATACAAGACATT-ATTGCTTTGGTGA-CGCAAAAAAA
* * ** * * * *
97905 ACTTTTCTTGCCCCCATTTTTGATAGAATCAATGTTTGTCTCTTAAATAAAAGAAGCTAGAATAG
192 GCTTTTCTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * * *
97970 TCATACTAAACCTTGTTCTTTTCAAGATTAGGCACTATAAACGTAGTCTTCTCATAAGGATGCAC
257 TCATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
98035 GATATTGATGCTTTGGCTTTT-AAAGAAAGGCTTTCTTCCCTACC-ATTTTTGTAAAGTCTGACT
322 GATATTGATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCC-ACCAATTTTTGTAAAGTCTGACT
* * * * * *
98098 TCGTGCCTCGAATAAGATAAACGTGGATTCTAGTAATGACCTTTATTCATTTTGTGATTGGGCAC
385 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
* * *
98163 TATAAACACAATCTTCACATTATGTT
450 TATAAACACATTCTTCACATTAGGAT
* *
98189 AAAGGATAATGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAATATCAAA
1 AAAGGATAATGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAA
* * *
98254 GTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCACCATTCTTTTCATGATTGGGA
66 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
**
98319 ACCAAAAACACA-TCCCTTTCATTAGGATACAAGACATTATTGCTTTGAAGACGCAAAAAAAGCT
131 ACCAAAAACACATTCCCTTT-ATTAGGATACAAGACATTATTGCTTTGGTGACGCAAAAAAAGCT
* * * * * * *
98383 TTTCTTACGATTGTTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGT-GAAGAATT
195 TTTCTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTC
* * * *
98447 ATACTAATCCCTATTCTTTTCAAGATTTGGCACCGTAAACATAGTCTTCTCATAAGGATACACGA
259 ATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
* *** * * * * * **
98512 TATTGATGCTTTGGTTTCGCCTGATAGGCTTTTTTCCCACCAGTTTTTATAAAGTCTAACTTTAT
324 TATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCGT
* * * * *
98577 GCCTCAATTGAGACAAATATAGATTATAGTAATGACCTTCATTCATTTTGTGGTTAGGCACTATA
389 GCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATA
98642 AACACATTCTTCACATTAGGAT
454 AACACATTCTTCACATTAGGAT
* * *
98664 AAAGGATAATGATGATTTTCTTTTGCATAAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAA
1 AAAGGATAATGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * *
98729 AGTTCATCCCTTAAATAAGACAAGCATCGATTATCGTAACTGTCTCCATTCTTTTCGAGATTGGG
65 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * *
98794 AACCAAAAACACATTCCCTTCATTAGGATACAAGACATTATTGCTTTGATGACACAAAAAAAGCT
130 AACCAAAAACACATTCCCTTTATTAGGATACAAGACATTATTGCTTTGGTGACGCAAAAAAAGCT
* *
98859 GTTCTTACC-GCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAAGT-GT
195 TTTCTTACCATC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA-TAGT
* * * * ** * *
98922 CATACTTATCCTTGTTCCTTCCAGGATTACCCACTATAAACATAGTCTTCTCATAACGATACACG
258 CATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
*
98987 ATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCG
323 ATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCG
*
99052 TGCCTCAAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCACTTTGTGATTAGGCACTA
388 TGCCTC-AAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTA
* *
99117 TAAACACATTTTTCAGATTAGGAT
452 TAAACACATTCTTCACATTAGGAT
* * *
99141 AAAGGATAATGATGATTTTTTTTTTTGCGTGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 AAAGGATAATGATGA---TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATC
* * * *
99206 AAAGTTCATCCCTCAAATAAGACAAGCATCGATCCTCATAATAGT-TCGCATTCTTTTCAA-AGT
63 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC-CATTCTTTTCAAGA-T
* ** ** * *
99269 TAGGAATAAAAAACACATTCCCTTCGTTAGGATACATGACATTGA-TGCTTTGGTGATGCAAAAA
126 TGGGAACCAAAAACACATTCCCTTTATTAGGATACAAGACATT-ATTGCTTTGGTGACGCAAAAA
* * * * *
99333 ACGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAATTAAGAGAAGCTAGAAT
190 AAGCTTTTCTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAAT
* ** * *
99398 AGTCATACTAAACCTTGTTCTTTTCTGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGC
255 AGTCATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * *
99463 ACGATACTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAGGTCTGACT
320 ACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACT
* * * * *
99528 TCGTGCCTCAAATGAGACAAACATTGATTCTTGTAATGATCTTCATTCATTTTGAGATTAGACAC
385 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
* * * *
99593 CATAAACACCTTC-TCTGCTTTAGGAT
450 TATAAACACATTCTTC-ACATTAGGAT
* * * * * * * * *
99619 AAATGTTATTGATGATTTTTTTTTGCGTGAAATTCTTTTCTTTGCCCAATTTACCTCAGAGTCAA
1 AAAGGATAATGATGA-TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * * ** * *
99684 AGTTCATCCCTTAAATATGCCAAGCAGCGAGGCTCGTAATAGTCTCCATTCTTTTCAAGATTGGC
65 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * *
99749 AACCAAAAACACATTTCCTTTGTTAGGATACATGACATTGA-TGCTTTGGTGACGCAGAAAAAGC
130 AACCAAAAACACATTCCCTTTATTAGGATACAAGACATT-ATTGCTTTGGTGACGCAAAAAAAGC
* * * * *
99813 TTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACATACATA-AAGAGT
194 TTTTCTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGT
* * * * * *
99877 CATACTAATCCCTATTTTTTTGAAGATTAGGCACCATAAACATTGTCTTCTCATAAGGATACACT
258 CATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * * * * * *
99942 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAACAATTTTTTTAAAATTTGACCTCG
323 ATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCG
* *
100007 TGCCTCAAACGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCACTAT
388 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
100072 AAA
453 AAA
100075 ATCTGACCTC
Statistics
Matches: 2451, Mismatches: 342, Indels: 84
0.85 0.12 0.03
Matches are distributed among these distances:
471 4 0.00
472 295 0.12
473 8 0.00
474 115 0.05
475 640 0.26
476 868 0.35
477 108 0.04
478 83 0.03
479 324 0.13
480 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (475 bp):
AAAGGATAATGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAA
GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
ACCAAAAACACATTCCCTTTATTAGGATACAAGACATTATTGCTTTGGTGACGCAAAAAAAGCTT
TTCTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAT
ACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGC
CTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAA
CACATTCTTCACATTAGGAT
Found at i:100123 original size:79 final size:79
Alignment explanation
Indices: 99992--100153 Score: 315
Period size: 79 Copynumber: 2.1 Consensus size: 79
99982 ACAATTTTTT
*
99992 TAAAATTTGACCTCGTGCCTCAAACGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
1 TAAAATCTGACCTCGTGCCTCAAACGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
100057 TTGATTAGGCACTA
66 TTGATTAGGCACTA
100071 TAAAATCTGACCTCGTGCCTCAAACGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
1 TAAAATCTGACCTCGTGCCTCAAACGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
100136 TTGATTAGGCACTA
66 TTGATTAGGCACTA
100150 TAAA
1 TAAA
100154 CACATTCTTC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (79 bp):
TAAAATCTGACCTCGTGCCTCAAACGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
TTGATTAGGCACTA
Found at i:101558 original size:476 final size:475
Alignment explanation
Indices: 100666--101804 Score: 1486
Period size: 476 Copynumber: 2.4 Consensus size: 475
100656 ATAATGGTGA
* * *
100666 TTTTCTTTGCATTATTTACTTTAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
1 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
100731 GTAATAGTTTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGA
* * *
100796 CATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTGCCACAATTTTTGATAGAATCAAAGTTT
131 CATT-ATTGCTTTGATGACGC-AAAAAAGCTTTTCTTACCACAATTTTTGATAAAATCAAAGTTT
* * * * * *
100860 GTCTTTTAAATAAGAGAAGCTAGAACAGTCATACTAAACCTTGTTCTTTTCAAGATTAGGCACCA
194 ATCTCTTAAATAAGACAAACTAGAACAGTCATACTAAACCCTATTCTTTTCAAGATTAGGCACCA
* ** * *
100925 TAAACGTAGTCTTCTCATAAGGATGCACTGTATTGATGCTTTGGCTTTTAAAGAAAGGCTTTCTT
259 TAAACATAGTCTTCTCATAAGGACACACTGTATTAATGCTTTGGCTTTGAAAGAAAGGCTTTCTT
* * * * * * *
100990 CCCCCCCATTTTTGTAATGTTTGACTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTAATGA
324 CCCCACCATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATAA
101055 CCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATTA-GATTAAAGGATAATGA
389 CCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATTAGGA-TAAAGGATAATGA
**
101119 TGATATTCTTTTGCATGGAAATC
453 TGATATTCTTTTGCATAAAAATC
* * *
101142 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATATA-ACAAGTATCGATCCG
1 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATTCT
* * * * *
101206 CATAACAGTCACCATTCTTTTCATGATTGGGAACGAAAAACACATTCTCTTT-ATTAGGATACAG
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTC-CTTTCATTAGGATACAA
* *** *
101270 GACATTATTGCTTTGATGACACAAAAAATGCTTTTCTTACCATTGTTTTTTATAAAATCAAAGTT
129 GACATTATTGCTTTGATGACGCAAAAAA-GCTTTTCTTACCACAATTTTTGATAAAATCAAAGTT
* * * *
101335 TATCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCACGATTTGGCAC
193 TATCTCTTAAATAAGACAAACTA-GAACAGTCATACTAAACCCTATTCTTTTCAAGATTAGGCAC
* * *
101399 CATATACATAGTCTTCTCATAAGGACACAC-GATATTAATGCTTTGG-TTTCGGATGAAAGG-TT
257 CATAAACATAGTCTTCTCATAAGGACACACTG-TATTAATGCTTTGGCTTT-GAAAGAAAGGCTT
* * *
101461 TTTTTCCCACCAGTTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGGATTATAGT
320 TCTTCCCCACCA-TTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTATAGT
* *
101526 AATAACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTGTTCACATTAGGATAAAGGATA
384 AATAACCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATTAGGATAAAGGATA
*
101591 ATGATGATTTTCTTTTGCATAAAAATC
449 ATGATGATATTCTTTTGCATAAAAATC
* * * *
101618 TTTTCTTTGCCTTATTTACCTTGAAATCAAAGTTTATCCCTTAAATAAGAAAAGCATCGATTATC
1 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
101683 GTAGCTGTCTCCATTCTTTAT-AAAATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAG
66 GTAACAGTCTCCATTCTTT-TCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAG
* * * * ** *
101747 ATATTATAGCTTTGATGATGCAAAACAAGCTGTTCTTACCACCGTTTTTGATAGAATC
130 ACATTATTGCTTTGATGACGCAAAA-AAGCTTTTCTTACCACAATTTTTGATAAAATC
101805 TGATGAAAAC
Statistics
Matches: 572, Mismatches: 78, Indels: 26
0.85 0.12 0.04
Matches are distributed among these distances:
475 28 0.05
476 534 0.93
477 10 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGA
CATTATTGCTTTGATGACGCAAAAAAGCTTTTCTTACCACAATTTTTGATAAAATCAAAGTTTAT
CTCTTAAATAAGACAAACTAGAACAGTCATACTAAACCCTATTCTTTTCAAGATTAGGCACCATA
AACATAGTCTTCTCATAAGGACACACTGTATTAATGCTTTGGCTTTGAAAGAAAGGCTTTCTTCC
CCACCATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATAACC
TTCATTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATTAGGATAAAGGATAATGATGA
TATTCTTTTGCATAAAAATC
Found at i:103454 original size:12 final size:11
Alignment explanation
Indices: 103432--103503 Score: 53
Period size: 12 Copynumber: 6.5 Consensus size: 11
103422 AGAGAAAGAA
*
103432 GAGAGAGGAGG
1 GAGATAGGAGG
103443 GATGATAGGAGG
1 GA-GATAGGAGG
*
103455 AGAGACAGGA--
1 -GAGATAGGAGG
*
103465 GAGATAGTA--
1 GAGATAGGAGG
103474 GAGATAGGAGG
1 GAGATAGGAGG
103485 GATGATAGGAGG
1 GA-GATAGGAGG
103497 AGAGATA
1 -GAGATA
103504 ATAGAGAGAG
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
9 15 0.30
11 4 0.08
12 27 0.54
13 4 0.08
ACGTcount: A:0.40, C:0.01, G:0.47, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:103483 original size:42 final size:42
Alignment explanation
Indices: 103422--103501 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
103412 TAGCCCTCAA
103422 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
103464 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGA
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGA
103502 TAATAGAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.44, C:0.01, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:103498 original size:33 final size:33
Alignment explanation
Indices: 103461--103531 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
103451 GAGGAGAGAC
* * *
103461 AGGAGAGATAGTAGAGATAGGAGGGATGATAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
103494 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
103527 AGGAG
1 AGGAG
103532 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.01, G:0.46, T:0.11
Consensus pattern (33 bp):
AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
Found at i:103510 original size:42 final size:42
Alignment explanation
Indices: 103422--103510 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
103412 TAGCCCTCAA
*
103422 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * * * *
103464 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAT
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
103506 AGAGA
1 AGAGA
103511 GAGGAGGGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.10
Consensus pattern (42 bp):
AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:110484 original size:475 final size:472
Alignment explanation
Indices: 109466--112604 Score: 3922
Period size: 475 Copynumber: 6.6 Consensus size: 472
109456 TTTAATCCAG
109466 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCT-GAAGAGTCATAC-AAATCCC
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CTAGAAGAGTCATACTAAA-CCC
* *
109529 TTTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTAATAAGGATACACGTTATTGATGCTT
64 TTTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * *
109594 TGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGA
129 TGGTTTTGAAAGAAAAGCTTT-TTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTC-AATGA
* * * * *
109659 GACAAACATGGATTCTAGTAATGATCTTCATTCATCTTGGGATTAGGCACCAT-AACACCTTCTC
192 GACAAACATGGATTCTAGTAATGA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT
* *** * * * *
109723 CCTATTAGGATAAATCTTATTGATGATTTTCTTTTACATGGAAA--TTTTCTTTGCCCTATTGAC
256 AC-ATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTAC
* * ** * * *
109786 CTTAAAATCAAAGTTCACCCCTCAAATAAGGTAAGCATTAAATCTCGTAATAGTCTCCATTCTTT
320 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* * * *
109851 TCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTATAGTGACG
385 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACA
109916 CAAAAAAAGCTTTTCTTACCACC
450 CAAAAAAAGCTTTTCTTACCACC
* * * *
109939 GTTTTTGATAGAATCAAAGATTT-TC-CTTAAATAAGAGAAACTGGAATAGTCATACTAATCCCT
1 GTTTTTGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAAACCCT
* * * * *
110002 GTTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTT
65 TTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * *
110067 GGTTTTGAAACAAAGGCTTTTTTCCCTCCAATTTTTGTAATGTCTGACTTCGTGCCTCAGATGAG
130 GGTTTTGAAAGAAAAGCTTTTTTCCC-CCAATTTTTGTAAAGTCTGACTTCGTGCCTCA-ATGAG
* * * *
110132 ACAAACATTGATTCTAGTAATGATCTTCATCCATTTTGTGATTAGGCACTGTAAGCACATTCTCT
193 ACAAACATGGATTCTAGTAATGA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-T
* * * * * * *
110197 TCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGCAAATCTTCTCTTTGCCATATTTACC
256 ACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACC
* * * *
110262 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAATCTCCATTCATTT
321 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
* * *
110327 CAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACAAGACATTGACGCTTTGGTGACAC
386 CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACAC
110392 -AAAAAAGCTTTTCTTACCACC
451 AAAAAAAGCTTTTCTTACCACC
* * * * * *
110413 GTTTTTGATAGAATCAAAGCTTGTCTCTAAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTT
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAAACCCTT
* *
110478 TTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTG
66 TTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* * * *
110543 GTTTTGAAAGAAATGCTTTCTTCCCCCTAATTTTTGCAAAGTCTGACTTCGTGCCTCAAATTAGA
131 GTTTTGAAAGAAAAGCTTTTTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTC-AATGAGA
* * *
110608 CAAACATTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCA
194 CAAACATGGATTCTAGTAATGA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-TA
* * * *
110673 CATTAGGATAAAGGACAAGGATGATTTTTTTTTGCATGGAAATCTTTTCTTCGCCTTATTTACCT
257 CATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCT
* * * * * *
110738 TAAAATCAAATTTCATCCCATAAATGAGGCAAGCGTTGATTTTCGTAACAGTCTCCATTCTTTTC
322 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTC
* * * * * * *
110803 AAGATTAGGAACTAAAAACACATTCCCTTCACTAGGATACAAGACACTAATGCTTTGGTGACGCA
387 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACACA
*
110868 AAAAACA-CGTTTCTTACCACC
452 AAAAA-AGCTTTTCTTACCACC
* * * * * *
110889 GTTTTTGATAGAATCAAAGTTTGTTTCTTAGATAAGACAAAC-ATCAAGACTCATACCAATCCCT
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAAACCCT
* *
110953 TTTCTTTTCAATATTTGGCACCATAAACATAGTCTTCTCATAAGGATAC-CAAATATTGATGCTT
65 TTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACAC-GATATTGATGCTT
* * * *
111017 TGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAATCTAACTTCGTGCCTCAATTGA
129 TGGTTTTGAAAGAAAAGCTTTTTTCCC-CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAA-TGA
** * * *
111082 GACAAACATATATTCTAGTATTGGACTTCATTCATTTTGTTATTAGGCACCATAAACACATTCTT
192 GACAAACATGGATTCTAGTAAT-GACTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT
* * *
111147 CACATTAGGATAAAGGATAATGAGGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCTTATTTAT
256 -ACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTAC
* * * * * *
111212 TTTAAAATCAAAGTTCATCCCTTAAATGAGGCAAGCATTGATTCTCATAACAGTCTTCTTTCTTT
320 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* * * *
111277 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATT-AAGGTTTGGTGACG
385 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACA
111341 CAAAAAAAGCTTTTCTTACCACC
450 CAAAAAAAGCTTTTCTTACCACC
* *
111364 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAAAGTCATACTAAACCCT
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAAACCCT
* * * * *
111428 ATTCTTTTCAAGATTTGGCACTATAAACATAGTATTCTCATATGGATACATGATATTGATGCTTT
65 TTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * *
111493 GG--TTGCACAAAAAAAGCTTTTTTCCCCCAATTTTTGTAAAGTCTAACTTCGTCCCTCAATTGA
130 GGTTTTG-A-AAGAAAAGCTTTTTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAA-TGA
* *
111556 GACAAACATGGATTCTAGTATTGGACTTCATTCGTTTTGTGATTAGGCACTATAAACACATTCTT
192 GACAAACATGGATTCTAGTAAT-GACTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-T
* * *
111621 TACATTAGGATAAAGGATAATGATGATTTTCTCTTACATTGAAATCTTTTCTTTGCCTTATTTAC
255 TACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTAC
*
111686 CTTAAAATCAAAGTTCATCCCTTAAATGAGGA-AAGCATTGATTCTCGTAACAGTCTCCATTCTT
320 CTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTT
* ** *
111750 TTCGAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTACTAAC
384 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGAC
* *
111815 ATAAAAAAAAAACTTTTCTTACCACC
449 --ACAAAAAAAGCTTTTCTTACCACC
* * * * *
111841 ATTTTTTATAAAATCAAAGTTTGTCTTTTAAATAAGACAAAC-ATGAAGAGTCATACTAACCCCT
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAAACCCT
* ** **
111905 ATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAATAATACAAAATATTGATGCTTT
65 TTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * *
111970 GGTTTCGCAAGAAAAGCTTTTTTCCCCCCAATTTTGGTAAAGTCTAACTTCGTGCCTTAATTGAG
130 GGTTTTGAAAGAAAAGCTTTTTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAA-TGAG
* * * * *
112035 GCAAACATGGATTCTAGTATAAGACTTCATCCATTTTGTTATTAGGCACTAAAAACACATTCTTC
193 ACAAACATGGATTCTAGTA-ATGACTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT-
** * *
112100 ACATTAGGATAAAGGATAATGACAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCC
256 ACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACC
** * * *
112165 TCGAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTTCATTCTTTT
321 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
* * * * ** * *
112230 TAAGATTGGGAACC-AAATCACATTCCCTTCATTAGAATACATGACATTGATTCCATGATGATAC
386 CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACAC
112294 AAAAAAAGCTTTTCTTACCACC
451 AAAAAAAGCTTTTCTTACCACC
* * * * * * *
112316 GTTTTTGATAGAATGAAAGTTTGTCTCTCAAACAAGAGAAACTACAATAGTCATACTAATCCCTA
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAAACCCT-
* * * * * * **
112381 CTT-TTTTCAGGATTGGGCACCACACACGTAGTCTTCTCATAAGGATACGTGATATTGATGCTTT
65 TTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * *
112445 GGCTTTGAAATAAATGCTTTCTTTCCCCCAATTTTTGTAATGTTTGACTTCGTGCCTCAAATGAG
130 GGTTTTGAAAGAAAAGCTTT-TTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTC-AATGAG
* * * **
112510 ACAAACCTAGATTGTAGTAATGACCTTCATTCATTTTGTGATTAGGTGCTATAAACACATTCTTC
193 ACAAACATGGATTCTAGTAATGA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT-
112575 ACATTAGGATAAAGGATAATGATGATTTTC
256 ACATTAGGATAAAGGATAATGATGATTTTC
112605 GATATTGCTG
Statistics
Matches: 2329, Mismatches: 296, Indels: 80
0.86 0.11 0.03
Matches are distributed among these distances:
471 8 0.00
472 186 0.08
473 73 0.03
474 307 0.13
475 934 0.40
476 399 0.17
477 203 0.09
478 217 0.09
479 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (472 bp):
GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAAACCCTT
TTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
GTTTTGAAAGAAAAGCTTTTTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAATGAGACA
AACATGGATTCTAGTAATGACTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTACATT
AGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
ATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGA
TTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACACAAAAA
AAGCTTTTCTTACCACC
Found at i:111301 original size:951 final size:948
Alignment explanation
Indices: 109466--112604 Score: 4189
Period size: 951 Copynumber: 3.3 Consensus size: 948
109456 TTTAATCCAG
* *
109466 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCT-GAAGAGTCATAC-AAATCCC
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAA-CTAGAATAGTCATACTAAA-CCC
* *
109529 TTTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTAATAAGGATACACGTTATTGATGCTT
64 TTTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* *
109594 TGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGA
129 TGGTTTTGAAAGAAATGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGA
* * * *
109659 GACAAACATGGATTCTAGTAATGATCTTCATTCATCTTGGGATTAGGCACCAT-AACACCTTCTC
193 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
*** * * *
109723 C-CTATTAGGATAAATCTTATTGATGATTTTCTTTTACATGGAAA--TTTTCTTTGCCCTATTGA
258 CAC-ATTAGGATAAAGGATAATGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCTTATTTA
* * * * * *
109785 CCTTAAAATCAAAGTTCA-CCCCTCAAATAAGGTAAGCATTAAATCTCGTAATAGTCTCCATTCT
322 CCTTAAAATCAAAGTTCATCCCAT-AAATGAGGAAAGCATTGATTCTCGTAACAGTCTCCATTCT
* *
109849 TTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTATAGTGA
386 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGA
* * *
109914 CGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGATT-TTCCTTAAATAAGAGAA
451 CGCAAAAAAA-CTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAA
* * * * * *
109978 AC-TGGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCA
515 ACAT-GAAGAGTCATACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCA
* * * * * *
110042 TAAGGATA-CACGATATTGATGCTTTGGTTTTGAAACAAAGGCTTTTTTCCCTCCAATTTTTGTA
579 TAAGGATACCA-AATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTA
* * *
110106 ATGTCTGACTTCGTGCCTCAGA-TGAGACAAACATTGATTCTAGTAATGATCTTCATCCATTTTG
643 AAGTCTAACTTCGTGCCTCA-ATTGAGACAAACATT-ATTCTAGTATTGA-CTTCATCCATTTTG
* * * * * * * *
110170 TGATTAGGCACTGTAAGCACATTC-TCTTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCA
705 TTATTAGGCACTATAAACACATTCTTC-ACATTAGGATAAAGGATAATGACGATTTTCTTTTGCA
* * * *
110234 TGCAAATCTTCTCTTTGCCATATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
769 TGAAAATCTTTTCTTTGCCTTATTTATCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * * *
110299 CGATTCTCGTAATAATCTCCATTCATTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGG
834 CGATTCTCGTAACAGTCTTCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* *
110364 ATACAAGACATTGACGCTTTGGTGACAC-AAAAAAGCTTTTCTTACCACC
899 ATACATGACATTGAAGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACC
* * * *
110413 GTTTTTGATAGAATCAAAGCTTGTCTCTAAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTT
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAAACCCTT
* *
110478 TTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTG
66 TTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* *
110543 GTTTTGAAAGAAATGCTTTCTTCCCCCTAATTTTTGCAAAGTCTGACTTCGTGCCTCAAATTAGA
131 GTTTTGAAAGAAATGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGA
* *
110608 CAAACATTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCA
195 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCA
* * * * *
110673 CATTAGGATAAAGGACAAGGATGATTTTTTTTTGCATGGAAATCTTTTCTTCGCCTTATTTACCT
260 CATTAGGATAAAGGATAATGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCTTATTTACCT
* * * *
110738 TAAAATCAAATTTCATCCCATAAATGAGGCAAGCGTTGATTTTCGTAACAGTCTCCATTCTTTTC
325 TAAAATCAAAGTTCATCCCATAAATGAGGAAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTC
* * * * * * *
110803 AAGATTAGGAACTAAAAACACATTCCCTTCACTAGGATACAAGACACTAATGCTTTGGTGACGCA
390 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGACGCA
* *
110868 AAAAACACGTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAGATAAGACAAACAT
455 AAAAA-ACTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACAT
* * * * *
110933 CAAGACTCATACCAATCCCTTTTCTTTTCAATATTTGGCACCATAAACATAGTCTTCTCATAAGG
519 GAAGAGTCATACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGG
*
110998 ATACCAAATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAATCT
584 ATACCAAATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCT
*
111063 AACTTCGTGCCTCAATTGAGACAAACATATATTCTAGTATTGGACTTCATTCATTTTGTTATTAG
649 AACTTCGTGCCTCAATTGAGACAAACAT-TATTCTAGTATT-GACTTCATCCATTTTGTTATTAG
* * * *
111128 GCACCATAAACACATTCTTCACATTAGGATAAAGGATAATGAGGATTTTCTTTTGAATGGAAATC
712 GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGACGATTTTCTTTTGCATGAAAATC
* * * *
111193 TTTTCTTTGCCTTATTTATTTTAAAATCAAAGTTCATCCCTTAAATGAGGCAAGCATTGATTCTC
777 TTTTCTTTGCCTTATTTATCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
111258 ATAACAGTCTTCTTTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGA
842 GTAACAGTCTTCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* *
111323 CATT-AAGGTTTGGTGACGCAAAAAAAGCTTTTCTTACCACC
907 CATTGAAGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACC
* * *
111364 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAAAGTCATACTAAACCCT
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAAACCCT
* * * * *
111428 ATTCTTTTCAAGATTTGGCACTATAAACATAGTATTCTCATATGGATACATGATATTGATGCTTT
65 TTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * * *
111493 GG--TTGCACAAAAAAAGCTTTTTTCCCCCAATTTTTGTAAAGTCTAACTTCGTCCCTCAATTGA
130 GGTTTTG-A-AAGAAATGCTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGA
* *
111556 GACAAACATGGATTCTAGTATTGGA-CTTCATTCGTTTTGTGATTAGGCACTATAAACACATTCT
193 GACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
** * *
111620 TTACATTAGGATAAAGGATAATGATGATTTTCTCTTACATTGAAATCTTTTCTTTGCCTTATTTA
257 CCACATTAGGATAAAGGATAATGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCTTATTTA
*
111685 CCTTAAAATCAAAGTTCATCCCTTAAATGAGGAAAGCATTGATTCTCGTAACAGTCTCCATTCTT
322 CCTTAAAATCAAAGTTCATCCCATAAATGAGGAAAGCATTGATTCTCGTAACAGTCTCCATTCTT
* * *
111750 TTCGAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTACTAAC
387 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGAC
** * * *
111815 ATAAAAAAAAAACTTTTCTTACCACCATTTTTTATAAAATCAAAGTTTGTCTT-TTAAATAAGAC
452 ---GCAAAAAAACTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGT-TTCTTAAATAAGAC
*
111879 AAACATGAAGAGTCATACTAACCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTC
513 AAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTC
** * * *
111944 ATAATAATACAAAATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCCCCAATTTTGGTA
578 ATAAGGATACCAAATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTA
* * * *
112009 AAGTCTAACTTCGTGCCTTAATTGAGGCAAACATGGATTCTAGTATAAGACTTCATCCATTTTGT
643 AAGTCTAACTTCGTGCCTCAATTGAGACAAACAT-TATTCTAGTAT-TGACTTCATCCATTTTGT
* *
112074 TATTAGGCACTAAAAACACATTCTTCACATTAGGATAAAGGATAATGACAATTTTCTTTTGCATG
706 TATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGACGATTTTCTTTTGCATG
** *
112139 AAAATCTTTTCTTTGCCTTATTT-TCCTCGAAATCAAAGTTCATCACTTAAATAAGACAAGCATC
771 AAAATCTTTTCTTTGCCTTATTTAT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * *
112203 GATTCTCGTAACAGTCTTCATTCTTTTTAAGATTGGGAACC-AAATCACATTCCCTTCATTAGAA
835 GATTCTCGTAACAGTCTTCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
** ** * *
112267 TACATGACATTGATTCCATGATGATACAAAAAAAGCTTTTCTTACCACC
900 TACATGACATTGAAGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACC
* * * * *
112316 GTTTTTGATAGAATGAAAGTTTGTCTCTCAAACAAGAGAAACTACAATAGTCATACTAATCCCTA
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAAACCCT-
* * * * * * **
112381 CTT-TTTTCAGGATTGGGCACCACACACGTAGTCTTCTCATAAGGATACGTGATATTGATGCTTT
65 TTTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * *
112445 GGCTTTGAAATAAATGCTTTCTTTCCCCCAATTTTTGTAATGTTTGACTTCGTGCCTCAAATGAG
130 GGTTTTGAAAGAAATGCTTTC-TTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAG
* * * * ** *
112510 ACAAACCTAGATTGTAGTAATGACCTTCATTCATTTTGTGATTAGGTGCTATAAACACATTCTTC
194 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
112575 ACATTAGGATAAAGGATAATGATGATTTTC
259 ACATTAGGATAAAGGATAATGATGATTTTC
112605 GATATTGCTG
Statistics
Matches: 1917, Mismatches: 241, Indels: 62
0.86 0.11 0.03
Matches are distributed among these distances:
946 7 0.00
947 214 0.11
948 47 0.02
949 4 0.00
950 437 0.23
951 541 0.28
952 530 0.28
953 134 0.07
954 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (948 bp):
GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAAACCCTT
TTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
GTTTTGAAAGAAATGCTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGAC
AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCAC
ATTAGGATAAAGGATAATGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCTTATTTACCTT
AAAATCAAAGTTCATCCCATAAATGAGGAAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA
AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGACGCAA
AAAAACTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGA
AGAGTCATACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGAT
ACCAAATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
CTTCGTGCCTCAATTGAGACAAACATTATTCTAGTATTGACTTCATCCATTTTGTTATTAGGCAC
TATAAACACATTCTTCACATTAGGATAAAGGATAATGACGATTTTCTTTTGCATGAAAATCTTTT
CTTTGCCTTATTTATCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
CAGTCTTCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
GAAGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACC
Found at i:112730 original size:176 final size:174
Alignment explanation
Indices: 112431--112780 Score: 502
Period size: 176 Copynumber: 2.0 Consensus size: 174
112421 AAGGATACGT
* * * * * ***
112431 GATATTGATGCTTTGGCTTTGAAATAAATGCTTTCTTTCCCCCAATTTTTGTAATGTTTGACTTC
1 GATATTGATGCTTTAGCTTTGAAACAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCCAACTTC
* *
112496 GTGCCTCAAATGAGACAAACCTAGATTGTAGTAATGACCTTCATTCATTTTGTGATTAGGTGCTA
66 GTGCCTCAAATGAGACAAACCTAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCGCTA
112561 TAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC
131 TAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC
* * * *
112605 GATATTGCTGCTTTAGTTTTTAAACAAAGGCTTTCTTCCCCCCCAATTTTTTTAAAGTCCAACTT
1 GATATTGATGCTTTAGCTTTGAAACAAAGGCTTTCTT-CCCCCCAATTTTTGTAAAGTCCAACTT
* * ** * *
112670 CGTGCCTCAATTGATACAAAAGTTAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCGT
65 CGTGCCTCAAATGAGAC-AAACCTAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCGC
112735 TATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC
129 TATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC
112781 TTTTGCATGG
Statistics
Matches: 154, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
174 31 0.20
175 36 0.23
176 87 0.56
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (174 bp):
GATATTGATGCTTTAGCTTTGAAACAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCCAACTTC
GTGCCTCAAATGAGACAAACCTAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCGCTA
TAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC
Found at i:112847 original size:651 final size:650
Alignment explanation
Indices: 111985--113256 Score: 1831
Period size: 651 Copynumber: 2.0 Consensus size: 650
111975 CGCAAGAAAA
* * * * *
111985 GCTTTTTTCCCCCCAATTTTGGTAAAGTCTAACTTCGTGCCTTAATTGAGGCAAACATGGATTCT
1 GCTTTTTCCCCCCCAATTTTGGTAAAGTCCAACTTCGTGCCTCAATTGAGACAAACATAGATTCT
112050 AGTATAAGACTTCATCCATTTTGTTATTAGGCACTAAAAACACATTCTTCACATTAGGATAAAGG
66 AGTATAAGACTTCATCCATTTTGTTATTAGGCACTAAAAACACATTCTTCACATTAGGATAAAGG
* * *
112115 ATAATGACAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTCGAAATCAAAGTTC
131 ATAATGACAATTTTCTTTTGCATGAAAATCTTTTATTTGCCTTATTTACCTCAAAATCAAAGTTC
* * *
112180 ATCACTTAAATAAGACAAGCATCGATTCTCGTAACAG-TCTTCATTCTTTTTAAGATTGGGAACC
196 ATCACTTAAATAAGACAAGCATCGATTCTCATAACAGTTC-CCATT-TTTTCAAGATTGGGAACC
* * * *
112244 A-AATCACATTCCCTTCATTAGAATACATGACATTGATTCCATGATGAT-ACAAAAAAAGCTTTT
259 ACAAACACATTCCCTTCATTAGAATACATGACAATGATGCCATGATG-TCACAAAAAAAGCTTTC
* *
112307 CTTACCACCGTTTTTGATAGAATGAAAGTTTGTCTCTCAAACAAGAGAAACTACAATAGTCATAC
323 CTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAACAAGAGAAACTACAATAGTCATAC
* * * * * ** *
112372 TAATCCCTACT-TTTTTCAGGATTGGGCACCACACACGTAGTCTTCTCATAAGGATACGTGATAT
388 TAA-ACATACTCCTTTTCAGGATTGGGCACCACAAACATAGTCTTCTCATAAGGATACACGATAC
* * * * *
112436 TGATGCTTTGGCTTTGAAATAAATGCTTTCTTTCCCCCAATTTTTGTAATGTTTGACTTCGTGCC
452 TAAAGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTTCGTGCC
*
112501 TCAAATGAGAC-AAACCTAGATTGTAGTAATGACCTTCATTCATTTTGTGATTAGGTGCTATAAA
517 TCAAATGAGACAAAACCTAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGTGCTATAAA
112565 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCGATATTGCTGCTTTAGTTTTTAAAC
582 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCGATATTGCTGCTTTAGTTTTTAAAC
112630 AAAG
647 AAAG
** *
112634 GCTTTCTTCCCCCCCAATTTTTTTAAAGTCCAACTTCGTGCCTCAATTGATACAAA-AGTTAGAT
1 GCTTT-TTCCCCCCCAATTTTGGTAAAGTCCAACTTCGTGCCTCAATTGAGACAAACA--TAGAT
* * ** *
112698 TCTAGTA-ATGACCTTCATTCATTTT-TTGATTAGGCGTTATAAACACATTCTTCACATTAGGAT
63 TCTAGTATAAGA-CTTCATCCATTTTGTT-ATTAGGCACTAAAAACACATTCTTCACATTAGGAT
** * * *
112761 AAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTATTTTCCTTATTTACCTTAAAATCAA
126 AAAGGATAATGACAATTTTCTTTTGCATGAAAATCTTTTATTTGCCTTATTTACCTCAAAATCAA
* *
112826 AGTTCATCCCTTAAATAAGACAAGCGTCGATTCTCATAACAGTTCCCATTTTTTCAAGATTGGGA
191 AGTTCATCACTTAAATAAGACAAGCATCGATTCTCATAACAGTTCCCATTTTTTCAAGATTGGGA
* ** * *
112891 ACCACAAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAAAAAAGCTT
256 ACCACAAACACATTCCCTTCATTAGAATACATGACAATGATGCCATGATGTCACAAAAAAAGCTT
* * * * *
112956 TCCTTACCGCTGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGAGAAGCTAGAATAGTCAT
321 TCCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAACAAGAGAAACTACAATAGTCAT
** * * *
113021 ACTAAACATTGTCCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGATGCACGATA
386 ACTAAACATACTCCTTTTCAGGATTGGGCACCACAAACATAGTCTTCTCATAAGGATACACGATA
113086 CTAAAGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTTCGTGC
451 CTAAAGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTTCGTGC
** *
113151 CTCAAATGAGACAAAAGTTAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGTGCTATAA
516 CTCAAATGAGACAAAACCTAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGTGCTATAA
113216 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC
581 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC
113257 TTTTGCATGG
Statistics
Matches: 549, Mismatches: 64, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
649 6 0.01
650 70 0.13
651 382 0.70
652 91 0.17
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (650 bp):
GCTTTTTCCCCCCCAATTTTGGTAAAGTCCAACTTCGTGCCTCAATTGAGACAAACATAGATTCT
AGTATAAGACTTCATCCATTTTGTTATTAGGCACTAAAAACACATTCTTCACATTAGGATAAAGG
ATAATGACAATTTTCTTTTGCATGAAAATCTTTTATTTGCCTTATTTACCTCAAAATCAAAGTTC
ATCACTTAAATAAGACAAGCATCGATTCTCATAACAGTTCCCATTTTTTCAAGATTGGGAACCAC
AAACACATTCCCTTCATTAGAATACATGACAATGATGCCATGATGTCACAAAAAAAGCTTTCCTT
ACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAACAAGAGAAACTACAATAGTCATACTAA
ACATACTCCTTTTCAGGATTGGGCACCACAAACATAGTCTTCTCATAAGGATACACGATACTAAA
GCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTTCGTGCCTCAA
ATGAGACAAAACCTAGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGTGCTATAAACACA
TTCTTCACATTAGGATAAAGGATAATGATGATTTTCGATATTGCTGCTTTAGTTTTTAAACAAAG
Found at i:113535 original size:476 final size:476
Alignment explanation
Indices: 112604--117052 Score: 5719
Period size: 476 Copynumber: 9.4 Consensus size: 476
112594 TGATGATTTT
* * * * * * * **
112604 CGATATTGCTGCTTTAGTTTTTAAACAAAGGCTTTCTTCCCCCCCAATTTTTTTAAAGTCCAACT
1 CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTT-CCCCCCAATTTTTGTAAAGTCTGACT
* * * *
112669 TCGTGCCTCAATTGATACAAA-AGTTAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGC
65 TCGTGCCTCAAATGAGACAAACA--TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGC
**
112733 GTTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTT
128 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTT
* * * *
112798 TTATTTTCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCGTCGATTCTCAT
193 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT
* *
112863 AACAGT-TCCCATT-TTTTCAAGATTGGGAACCACAAACACATTCCCTTCATTAGGATACATGAC
258 AACAGTCT-CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * * *
112926 AATGATGCTTTGGTG-TCGCAAAAAAAGCTTTCCTTACCGCTGTTTTTGATAGAATCAAAGTTTG
322 ATTGATGCTTTGGTGAT-GCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTG
* * *
112990 TCTCTAAAATAAGAGAAGCTAGAATAGTCATACTAAACATTGTCCTTTTCAGGATTTGGCACCAT
386 TCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCAT
*
113055 AAACATAGTCTTCTCATAAGGATGCA
451 AAACGTAGTCTTCTCATAAGGATGCA
* * * *
113081 CGATACTAAAGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTT
1 CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
* * **
113146 CGTGCCTCAAATGAGACAAA-AGTTAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGTG
66 CGTGCCTCAAATGAGACAAACA--TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCA
113210 CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTT
129 CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTT
* * * *
113275 TATTTTCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCGTCGATTCTCATA
194 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* *
113340 ACAGT-TCCCATT-TTTTCAAGATTGGGAACCACAAACACATTCCCTTCATTAGGATACATGACA
259 ACAGTCT-CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * *
113403 ATGATGCTTTGGTG-TCGCAAAAAAAGCTTTCCTTACCGCCGTTTTTGATAGAATCAAAGTTTGT
323 TTGATGCTTTGGTGAT-GCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
113467 CTCTAAAATAAGAGAAGCTAGAATAGTCATACTAAACATTGTCCTTTTCAGGATTTGGCACCATA
387 CTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATA
*
113532 AACATAGTCTTCTCATAAGGATGCA
452 AACGTAGTCTTCTCATAAGGATGCA
* * * *
113557 CGATACTAAAGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAATGTCTGACTT
1 CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
* * *
113622 CGTGCCTCAAATGAGACAAA-AGTTAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCG
66 CGTGCCTCAAATGAGACAAACA--TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCA
113686 CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTT
129 CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTT
* * * * *
113751 TATTTTCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACGTCGATTCTCATA
194 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
** *
113816 ACAGT-TCCCATT-TTTTCAAGTTTGGGAACCACAAACACATTCCCTTCATTAGGATACATGACA
259 ACAGTCT-CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* ** * * *
113879 ATGATGCTTTGGTGACACAAAAAAAGCTTTTCTTGCCGCCGTTTTTGATACAATCAAAGTTTGTC
323 TTGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTC
** *
113944 TCTTAAATAAGAGAAGCTAGAATAGTCATACTAAATGTTGTTCTTTTAAGGATTTGGCACCATAA
388 TCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAA
* *
114009 ACGTAGTCTTCTCGTAAGGATGCG
453 ACGTAGTCTTCTCATAAGGATGCA
* * * *
114033 TGATATTGATGCTTTGGTTTTGAAAGGAAT-CTTTCTTCCCCCCAATTTTTGCAAAGTCTGACTT
1 CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
*
114097 CGTGCCTCAAATGAGACAAACATTGG-TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
66 CGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGG--C
* * * *
114161 ACTATAAACACATTCTCCACATTAGGATACAA-GATAAGGATGATTTTTTTTTTTGCATGAAAAT
128 ACTATAAACACATTCTTCACATTAGGATA-AAGGATAATGATGA--TTTTCTTTTGCATGGAAAT
* * *
114225 CTTTTCTTTGCCTTATTTACGTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCT
190 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * * **
114290 TGTAACAATCTTCATTCCTTTCAAGAATGCAAACCAAAAACACATTCCCTTCATTAGGATACATG
255 CGTAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * *
114355 ACATTGATGCTTTGGTGACGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGCTT
320 ACATTGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTT
* * * * *
114420 GCCTTTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTT-ATAGATTAGGCATC
385 GTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCA-GGATTTGGCACC
114484 ATAAACGTAGTCTTCTCATAAGGATGCA
449 ATAAACGTAGTCTTCTCATAAGGATGCA
* * ** * * * * * *
114512 CAAAATTGATGCTTCAGTTTTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGTCTGACTT
1 CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
* * * * * *
114577 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAGCTTCAATAATTTTGTGATTATGCACA
66 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
* * * * * *
114642 ATAAACACAATCTTCACGTTAGGTTAAAGGACAAGGATGATTTTGTTTTGCATGGAAATCTTTTC
131 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTC
* * *
114707 TTTGGCTTATTTACCTTAGAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAAC
196 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
** * *
114772 AGTCTTTATTCTTTTCAAGAATGGAAACCAAAAACACATTTCCTTCATTAGGATACATGACATTG
261 AGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
*
114837 ATGCTTTGGTGATGTAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
326 ATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * *
114902 GAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCTGGATTTGGCACCGTAAATG
391 TAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACG
114967 TAGTCTTCTCATAAGGATGCA
456 TAGTCTTCTCATAAGGATGCA
* ** *
114988 CGATATTGATGGTTTGATTTTGGAAGAAATGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTT
1 CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
* * * *
115052 CGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCTTCATTCATTTTGTAATTAGGCACT
66 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
* * * ** * *
115117 GTAAACACATTCTCCATATTAGCTTAAAGGATAAGGATGATTTTTTTTTTTTTGCATGGAAATCT
131 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA----TTTTCTTTTGCATGGAAATCT
* * * *
115182 TTTCCTTGCCTTATTTACCTTAAAATCAAGGTTCAACCCTTAAATAA-AGCAA-CATCGATTCTT
192 TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTC
* * * * *
115245 GTAATAGTCTCTATTCTTTTCAGGAATGGGAACTAAAAACACATTCCTTTCATTAGGATACATGA
256 GTAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* * * *
115310 CATTGATGCTTCGGTGATGCAGAAAAAGCATTTCTTGCCA-CGATTTTCGATAGAATTAAAGTTT
321 CATTGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCG-TTTTTGATAGAATCAAAGTTT
* * ** *
115374 GTCTCTTAAATAAGA-AAGGCTAGAATAGTCATATTAAACTTTGTTCTTTTCCA-GATTACGCAT
385 GTCTCTTAAATAAGAGAA-GCTAGAATAGTCATACTAAACCTTGTTCTTTT-CAGGATTTGGCAC
*** *
115437 TGCAAACGTAGTCTTCTCATAAGGACGCA
448 CATAAACGTAGTCTTCTCATAAGGATGCA
* * *
115466 CGATATTGATGCTTTGGCTTTTAAAG-AATGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAACT
1 CGATATTGATGCTTTGGCTTTGAAAGAAAT-GCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACT
*
115530 TTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
65 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
* * * * * *
115595 TGTAAACACATTCTTCACATTAGGGTAAAGGATAATGTTAATTTT-TCTTTACATGAAAATCTTT
130 TATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCT-TTTGCATGGAAATCTTT
115659 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
194 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* * *
115724 ACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACTTTTCCTTCATTAGGATACATGTCAT
259 ACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* *
115789 TGATGCTTTGGTGAT-TATGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATGAAAGTTTGTC
324 TGATGCTTTGGTGATGCA-GAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * * *
115853 TCTTAAATAAGAAAAGCTAGAATACTCATGCTAAACCTTGTTCTTTTCAGGATTAGGCACCACAA
388 TCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAA
* * * *
115918 A-GAAAGTCTTCTCAGAATGATACA
453 ACG-TAGTCTTCTCATAAGGATGCA
* * * * * *
115942 TGATACTGATGCTTT-GCTTTTTAAAGAAAGGGTTTCTTCCCCCCAAATTTTGTAAAGTCTGACT
1 CGATATTGATGCTTTGGC-TTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACT
* * * *
116006 TTGTGACTCAAATGAGACAAACATGGATTCCAGTAATGACCTTCATCCATTTTGTGATTAGGCAC
65 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
* * * *
116071 AACAAACACATTCTTCACATTAGGATAAGGGATAATGATGATTTTCTTTTGCATGGAAATCGTTT
130 TATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTT
* * *
116136 CTTTGCC--A---ACCATAAAATCAAAGCTT-ATCCCTTAAATAAGACAAGCATCGATACTTGTA
195 CTTTGCCTTATTTACCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* * * *
116195 ACAGT-TCCCATTTTTCTTC---AA----AACCAAAAACACATTCCCTTCATTTGGATACAGGAT
259 ACAGTCT-CCATTCTT-TTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * *** *
116252 ATTGATGCTTTGGTGATGCAAAAAAAGC-TTTCTTACTGTCGTTTTTGATAGAATCAAAGCTTGT
322 ATTGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
116316 CACTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTTTTCTTTTTAGGATTTGGCACCATA
387 CTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATA
116381 AACGTAGTCTTCTCATAAGGATGCA
452 AACGTAGTCTTCTCATAAGGATGCA
* * *
116406 CGATATTGATGCTTTGG-TTTCGAAAGAAATGCTTTCTTCCCCTCAGTTTTTGCAAAGTCTGACT
1 CGATATTGATGCTTTGGCTTT-GAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACT
* * * * *
116470 TCGTGCCTCAAATGAGACAAACATTGATTCTTGTAGTGATCTTCATTCATTTTTTGATTAGGCAC
65 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCAC
* * * * *
116535 TATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAATATT-TTTTGCATGAAAATCTTT
130 TATAAACACATTCTTCACATTAGGATAAAGGATAATGATG-ATTTTCTTTTGCATGGAAATCTTT
* *
116599 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCATA
194 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* * * *
116664 ATAGTCTCCATTGTTTTCAAGAATGGGATCCAAAAACACATTCCCTTCATTAGGATACAAGACAT
259 ACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * * * *
116729 TGATACTTTGGTGATGCAGAAAAAGCTTTTTTTACCACCATTTTTGACAAAAACAAAGTTTGCCT
324 TGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * ** * * *
116794 CTTAAATAGGAAAAGCTAGAATAGTGTTACAAAACCTTGTTCTTTTCTGGATTAGGCACCATAAA
389 CTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAA
*
116859 CATAGTCTTCTCATAAGGATGCA
454 CGTAGTCTTCTCATAAGGATGCA
* * * * * * * *
116882 CGATATTGATGCTTTGGTTTTTAAAGAAAGGGTTTCTTGCCCCCAATTTTTGAAAAGCCCGACTT
1 CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
* * * *
116947 CGCGCCTCAAAAGAGACAAACATGGATTCTCA-TAATGACCTTCATTCCTTTTGCGATTAGGCAC
66 CGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGACCTTCATTCATTTTGTGATTAGGCAC
*
117011 TATAAACACATTCTTCACATTAGGTTAAAGGATAATTGATGA
130 TATAAACACATTCTTCACATTAGGATAAAGGATAA-TGATGA
117053 CAACCATGAA
Statistics
Matches: 3541, Mismatches: 370, Indels: 123
0.88 0.09 0.03
Matches are distributed among these distances:
463 3 0.00
464 269 0.08
465 60 0.02
466 2 0.00
468 5 0.00
469 56 0.02
470 2 0.00
471 59 0.02
472 5 0.00
474 35 0.01
475 296 0.08
476 1869 0.53
477 54 0.02
478 351 0.10
479 392 0.11
480 83 0.02
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
CGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTT
CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTC
TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
AGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
ATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACG
TAGTCTTCTCATAAGGATGCA
Found at i:115555 original size:954 final size:948
Alignment explanation
Indices: 112604--117045 Score: 5740
Period size: 954 Copynumber: 4.7 Consensus size: 948
112594 TGATGATTTT
* * * * * ** **
112604 CGATATTGCTGCTTTAGTTTTTAAACAAAGGCTTTCTTCCCCCCCAATTTTTTTAAAGTCCAACT
1 CGATATTGATGCTTTGGCTTTTAAAGAATGGCTTTCTT-CCCCCCAATTTTTGAAAAGTCTGACT
* *
112669 TCGTGCCTCAATTGATACAAA-AGTTAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGC
65 TCGTGCCTCAAATGAGACAAACA--TAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGC
**
112733 GTTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTT
128 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTT-TTTTGCATGGAAATCTT
* * *
112798 TTATTTTCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCGTCGATTCTCAT
192 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* *
112863 AACAGT-TCCCATTTTTTCAAGATTGGGAACCACAAACACATTCCCTTCATTAGGATACATGACA
257 AACAGTCT-CCATTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * * *
112927 ATGATGCTTTGGTG-TCGCAAAAAAAGCTTTCCTTACCGCTGTTTTTGATAGAATCAAAGTTTGT
321 TTGATGCTTTGGTGAT-GCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
112991 CTCTAAAATAAGAGAAGCTAGAATAGTCATACTAAACATTGTCCTTTTCAGGATTTGGCACCATA
385 CTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATA
* * * * *
113056 AACATAGTCTTCTCATAAGGATGCACGATACTAAAGCTTTGGCTTTGAAAGAAATGCTTTCTTCC
450 AACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCC
* *
113121 CCCCAATTTTTGTAATGTCTGACTTCGTGCCTCAAATGAGACAAA-AGTTAGATTCTAGTAATGA
515 CCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA--TGGATTCTAGTAATGA
* ** *
113185 CCTTCATTCATTTTTTGATTAGGTGCTATAAACACATTCTTCACATTAGGATAAAGGATAATGAT
578 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGAT
* * *
113250 GATTTTCTTTTGCATGGAAATCTTTTATTTTCCTTATTTACCTTAAAATCAAAGTTCATCCCTTA
643 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTA
* ** * *
113315 AATAAGACAAGCGTCGATTCTCATAACAGTTCCCATT-TTTTCAAGATTGGGAACCACAAACACA
708 AATAAGACAAGCATCGATTCTTGTAACAGTTCCCATTCTTTTCAAGAATGGGAACCAAAAACACA
* *
113379 TTCCCTTCATTAGGATACATGACAATGATGCTTTGGTG-TCGCAAAAAAAGCTTTCCTTACCGCC
773 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGAT-GCAAAAAAAGCTTT-CTTACC-AC
* * *
113443 GTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGAGAAGCTAGAATAGTCATACTAAACATTG
835 GTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACTTTG
* * *
113508 TCCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGATGCA
900 TTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* * * * * *
113557 CGATACTAAAGCTTTGGCTTTGAAAGAAAT-GCTTTCTTCCCCCCAATTTTTGTAATGTCTGACT
1 CGATATTGATGCTTTGGCTTTTAAAG-AATGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTGACT
113621 TCGTGCCTCAAATGAGACAAA-AGTTAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGC
65 TCGTGCCTCAAATGAGACAAACA--TAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGC
*
113685 GCTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTT
128 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTT-TTTTGCATGGAAATCTT
* * * *
113750 TTATTTTCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACGTCGATTCTCAT
192 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
** *
113815 AACAGT-TCCCATTTTTTCAAGTTTGGGAACCACAAACACATTCCCTTCATTAGGATACATGACA
257 AACAGTCT-CCATTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* ** * * *
113879 ATGATGCTTTGGTGACACAAAAAAAGCTTTTCTTGCCGCCGTTTTTGATACAATCAAAGTTTGTC
321 TTGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTC
** *
113944 TCTTAAATAAGAGAAGCTAGAATAGTCATACTAAATGTTGTTCTTTTAAGGATTTGGCACCATAA
386 TCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAA
* ** *
114009 ACGTAGTCTTCTCGTAAGGATGCGTGATATTGATGCTTTGGTTTTGAAAGGAAT-CTTTCTTCCC
451 ACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCC
* *
114073 CCCAATTTTTGCAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGG-TTCTAGTAATGATC
516 CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGACC
*
114137 TTCATTCATTTTGTGATTAGGCACACTATAAACACATTCTCCACATTAGGATACAA-GATAAGGA
580 TTCATTCATTTTGTGATTAGG--CACTATAAACACATTCTTCACATTAGGATA-AAGGATAAGGA
* * *
114201 TGATTTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACGTTAAAATCAAAGTTCAACCC
642 TGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCC
* * * * **
114266 TTAAATAAGACAAGCATCAATTCTTGTAACA-ATCTTCATTCCTTTCAAGAATGCAAACCAAAAA
705 TTAAATAAGACAAGCATCGATTCTTGTAACAGTTC-CCATTCTTTTCAAGAATGGGAACCAAAAA
* * *
114330 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAGAAAAAGCTTTTCTTGCC
769 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGC-TTTCTTACC
* * * *
114395 ACCGTTTTTGATAAAATCAAAGCTTGCCTTTTAAATAAGAGAAGCTAGAATAGTCATACTAAACC
833 A-CGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACT
* *
114460 TTGTTCTTTT-ATAGATTAGGCATCATAAACGTAGTCTTCTCATAAGGATGCA
897 TTGTTCTTTTCA-GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* * ** * * * *
114512 CAAAATTGATGCTTCAGTTTTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGTCTGACTT
1 CGATATTGATGCTTTGGCTTTTAAAGAATGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTGACTT
* * * * * * * *
114577 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAGCTTCAATAATTTTGTGATTATGCACA
66 CGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCACT
* * * * *
114642 ATAAACACAATCTTCACGTTAGGTTAAAGGACAAGGATGATTTTGTTTTGCATGGAAATCTTTTC
131 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTT-TTTTGCATGGAAATCTTTTC
* * * *
114707 TTTGGCTTATTTACCTTAGAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAAC
195 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAAC
** * *
114772 AGTCTTTATTCTTTTCAAGAATGGAAACCAAAAACACATTTCCTTCATTAGGATACATGACATTG
260 AGTCTCCATT-TTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
*
114837 ATGCTTTGGTGATGTAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
324 ATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * *
114902 GAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCTGGATTTGGCACCGTAAATG
389 TAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACG
* * *
114967 TAGTCTTCTCATAAGGATGCACGATATTGATGGTTTGATTTTGGAAGAAATGCTTTCTT-CCCCC
454 TAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCC
* * *
115031 AATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCTTCA
519 AATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCA
* * * * **
115096 TTCATTTTGTAATTAGGCACTGTAAACACATTCTCCATATTAGCTTAAAGGATAAGGATGATTTT
584 TTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGATGA----
* * *
115161 TTTTTTTTTGCATGGAAATCTTTTCCTTGCCTTATTTACCTTAAAATCAAGGTTCAACCCTTAAA
645 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAA
* * * *
115226 TAA-AGCAA-CATCGATTCTTGTAATAG-TCTCTATTCTTTTCAGGAATGGGAACTAAAAACACA
710 TAAGA-CAAGCATCGATTCTTGTAACAGTTC-CCATTCTTTTCAAGAATGGGAACCAAAAACACA
* * * *
115288 TTCCTTTCATTAGGATACATGACATTGATGCTTCGGTGATGCAGAAAAAGCATTTCTTGCCACGA
773 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGC-TTTCTTACCACG-
* * * *
115353 TTTTCGATAGAATTAAAGTTTGTCTCTTAAATAAGA-AAGGCTAGAATAGTCATATTAAACTTTG
836 TTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAGAA-GCTAGAATAGTCATACTAAACTTTG
* **** *
115417 TTCTTTTCCA-GATTACGCATTGCAAACGTAGTCTTCTCATAAGGACGCA
900 TTCTTTT-CAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
*
115466 CGATATTGATGCTTTGGCTTTTAAAGAATGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAACTT
1 CGATATTGATGCTTTGGCTTTTAAAGAATGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTGACTT
* * *
115531 TGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT
66 CGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCACT
* * * * * *
115596 GTAAACACATTCTTCACATTAGGGTAAAGGATAATGTTAATTTTTCTTTACATGAAAATCTTTTC
131 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTT-TTTGCATGGAAATCTTTTC
*
115661 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
195 TTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAAC
* * *
115726 AGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACTTTTCCTTCATTAGGATACATGTCATTG
260 AGTCTCCATT-TTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* *
115791 ATGCTTTGGTGAT-TATGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATGAAAGTTTGTCTC
324 ATGCTTTGGTGATGCA-GAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * *
115855 TTAAATAAGAAAAGCTAGAATACTCATGCTAAACCTTGTTCTTTTCAGGATTAGGCACCACAAA-
388 TTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAAC
* * * * * * * * * *
115919 GAAAGTCTTCTCAGAATGATACATGATACTGATGCTTTGCTTTTTAAAGAAAGGGTTTCTTCCCC
453 G-TAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCC
* * * *
115984 CCAAATTTTGTAAAGTCTGACTTTGTGACTCAAATGAGACAAACATGGATTCCAGTAATGACCTT
517 CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTT
* * * * *
116049 CATCCATTTTGTGATTAGGCACAACAAACACATTCTTCACATTAGGATAAGGGATAATGATGATT
582 CATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGATGATT
* * *
116114 TTCTTTTGCATGGAAATCGTTTCTTTGCC--A---ACCATAAAATCAAAGCTT-ATCCCTTAAAT
647 TTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG-TTCAACCCTTAAAT
* *
116173 AAGACAAGCATCGATACTTGTAACAGTTCCCATTTTTCTTC---AA----AACCAAAAACACATT
711 AAGACAAGCATCGATTCTTGTAACAGTTCCCATTCTT-TTCAAGAATGGGAACCAAAAACACATT
* * * **
116231 CCCTTCATTTGGATACAGGATATTGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACTGTCGTTT
775 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTCTTAC-CACGTTT
* *
116296 TTGATAGAATCAAAGCTTGTCACTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTT-TTC
839 TTGATAGAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAA-CTTTGTTC
* *
116360 TTTTTAGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
903 TTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* * * *
116406 CGATATTGATGCTTTGG-TTTCGAAAGAAAT-GCTTTCTTCCCCTCAGTTTTTGCAAAGTCTGAC
1 CGATATTGATGCTTTGGCTTT-TAAAG-AATGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTGAC
* * * *
116469 TTCGTGCCTCAAATGAGACAAACATTGATTCTTGTAGTGATCTTCATTCATTTTTTGATTAGGCA
64 TTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCA
* * * * *
116534 CTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAATATTTTTTGCATGAAAATCTTT
129 CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATG-ATTTTTTTTGCATGGAAATCTTT
*
116599 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCATA
193 TCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* * *
116664 ATAGTCTCCATTGTTTTCAAGAATGGGATCCAAAAACACATTCCCTTCATTAGGATACAAGACAT
258 ACAGTCTCCATT-TTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * * * *
116729 TGATACTTTGGTGATGCAGAAAAAGCTTTTTTTACCACCATTTTTGACAAAAACAAAGTTTGCCT
322 TGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * ** * * *
116794 CTTAAATAGGAAAAGCTAGAATAGTGTTACAAAACCTTGTTCTTTTCTGGATTAGGCACCATAAA
387 CTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAA
* * * * *
116859 CATAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGGTTTCTTGCCC
452 CGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCC
* * * * *
116924 CCAATTTTTGAAAAGCCCGACTTCGCGCCTCAAAAGAGACAAACATGGATTCTCA-TAATGACCT
517 CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGACCT
* * *
116988 TCATTCCTTTTGCGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAA
581 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAA
117046 TTGATGACAA
Statistics
Matches: 3079, Mismatches: 362, Indels: 109
0.87 0.10 0.03
Matches are distributed among these distances:
939 4 0.00
940 645 0.21
941 75 0.02
945 2 0.00
946 28 0.01
947 25 0.01
948 5 0.00
949 1 0.00
950 33 0.01
951 83 0.03
952 478 0.16
953 75 0.02
954 898 0.29
955 715 0.23
956 12 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (948 bp):
CGATATTGATGCTTTGGCTTTTAAAGAATGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTGACTT
CGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTTTTTGATTAGGCACT
ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTTTTTGCATGGAAATCTTTTCT
TTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACA
GTCTCCATTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGTA
GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAA
TTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGATGATTTTCT
TTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGAC
AAGCATCGATTCTTGTAACAGTTCCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCACGTTTTTGATAG
AATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACTTTGTTCTTTTCAGG
ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
Found at i:122038 original size:18 final size:18
Alignment explanation
Indices: 122015--122122 Score: 58
Period size: 21 Copynumber: 5.3 Consensus size: 18
122005 ATCTTCTTCT
122015 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
122033 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
122054 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
122075 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
122096 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
122117 CTCCTC
1 CTCCTC
122123 TCTCTTCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 14 0.20
19 4 0.06
20 6 0.09
21 22 0.31
22 6 0.09
23 4 0.06
24 8 0.11
25 3 0.04
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:122070 original size:42 final size:42
Alignment explanation
Indices: 122018--122136 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
122008 TTCTTCTCTC
*
122018 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
122060 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
122102 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
122137 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:122077 original size:12 final size:11
Alignment explanation
Indices: 122051--122126 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
122041 TCTATTATCT
*
122051 CTCCTGTCTCTC
1 CTCCTATCTC-C
122063 CTCCTATCATCC
1 CTCCTATC-TCC
122075 CTCCTATCT--
1 CTCCTATCTCC
*
122084 CTACTATCT--
1 CTCCTATCTCC
*
122093 CTCCTGTCTCTC
1 CTCCTATCTC-C
122105 CTCCTATCATCC
1 CTCCTATC-TCC
*
122117 CTCCTCTCTC
1 CTCCTATCTC
122127 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:124692 original size:475 final size:470
Alignment explanation
Indices: 123746--125785 Score: 2682
Period size: 475 Copynumber: 4.3 Consensus size: 470
123736 GTTTTCATCA
* *
123746 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATCAAAGTTCAACCC
1 ATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTACCATAAAATCAAAGTTCAACCC
* *
123811 TTAAATAAGACAAGCATCGATTCTCGTAAAAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAAC
66 TTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTCAAGAATGGGAACCAAAAAC
* * * * * **
123876 ACATTCCCTTCACTAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAATCTTTCTTACCGT
131 ACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAAAAAAAGCTTTCTTACCAC
* * *
123941 CGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTT
196 CATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAAAAGCTAGAATAGTCATTCAAAACCTT
* * * *
124006 CTTCTTTTTAGGATTTGGCACCATAAACGTAGTTTTGTCATAAGGATGCACGATATTGATGCTTT
261 CTTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACAATATTGATGCTTT
* *
124071 GGTTTTGAAAGAAATGCTTTCTCCCCCCCCAATTTTTGCAAAGTCTGACTTCGTGCCTCAAATGA
326 GGTTTTGAAAGAAAGGCTTTCT-CCCCCCCAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGA
* * *
124136 GACAAACATTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
390 GACAAACATGGATTCTCGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
124201 CACAATAGGATAAAGG
455 CACAATAGGATAAAGG
* * * * *
124217 ATAAGGATGATTTT-TTTTGCATGAAAATATTTTTTTTGCCTTATTTACCTTAAAATAAAAGTTC
1 ATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACC-----TACCATAAAATCAAAGTTC
* * * *
124281 AACCCTTAAATAAGACAAGCATCGATTCTCATAATAG-TCTCCATTCTTTTT-AGGAATGGGAGC
61 AACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTC-CCATT-TTTTTCAAGAATGGGAAC
* * *
124344 CAAAAACAGATTCCCTTCATTAGGATACATGACACTGATACTTTGGTGATGCAGAAAAAGCTTTT
124 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAAAAAAAGC-TTT
* * * *
124409 CTTGCCACCATTTTTTATAGAAAT-AAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATAGTC-TT
188 CTTACCACCATTTTTGATAG-AATCAAAGCTTGTCTCTTAAATAAGAAAAGCTAGAATAGTCATT
* *
124472 ACAAAACCTTGTTCTTTTCT-GGATTAGGCACCATAAACGTAGTCTTCTCATAACGATGCACAAT
252 -CAAAACCTTCTTCTTTT-TAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACAAT
* * ** *
124536 ATTAATGCTTTGGTTTTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAG-CTTGACTTCGT
315 ATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTCCCCCCCAATTTTTGAAAAGTC-TGACTTCGT
* * * * *
124600 GCCTCAAATGAGACAAACAAGGATTCTCGTAATGACCTTCACTCATTCTCTGATTGGGCACTATA
379 GCCTCAAATGAGACAAACATGGATTCTCGTAATGACCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
124665 AACACATTCTTCACATTAAGTTAAAGG
444 AACACATTCTCCACAATAGGATAAAGG
* * * *
124692 ATAATGATGATTTTCTATTGCATGGAAATCTTTTCTTTACCTACCATAAAATCAAAGTTCATCCC
1 ATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTACCATAAAATCAAAGTTCAACCC
* *
124757 TTAAATAAGACAAGCATCGATACTTGTAACAGTTCCCATTTTTTTTC---AA----AACCAAAAA
66 TTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCA-TTTTTTTCAAGAATGGGAACCAAAAA
* ** * * *
124815 CACATTCCTTTCATTAGGATACGGGATATTGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCG
130 CACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAAAAAAAGCTTTCTTACCA
* * * *
124880 TCGTTTTTGATAGAATCAAAGCTT-TCTCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCT
195 CCATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAAAAGCTAGAATAGTCATTCAAAACCT
*
124944 TCTTCTTTTTAGGATTTGGCACCATAAACGTAGTCTTGC-CATAAGGATGCACAATATTGATGCT
260 TCTTCTTTTTAGGATTAGGCACCATAAACGTAGTCTT-CTCATAAGGATGCACAATATTGATGCT
* * *
125008 TTGGTTTTGAAAGGAATGCTTTCTCCCCCCCAATTTTTGCAAAGTCTGACTTCGTGCCTCAAATG
324 TTGGTTTTGAAAGAAAGGCTTTCTCCCCCCCAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATG
* * * *
125073 AGACAAACATTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCA
389 AGACAAACATGGATTCTCGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
125138 CCACAATAGGATAAAGG
454 CCACAATAGGATAAAGG
* * *
125155 ATAAGGATGATTTT-TTTTGCATAAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTC
1 ATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACC-----TACCATAAAATCAAAGTTC
*
125219 AACCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TCTCCATTCTTTTCAAGAATGGGAACC
61 AACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTC-CCATTTTTTTCAAGAATGGGAACC
* *
125283 AAAAACACATTCCCTTCATTAGGATACATGACATTGATACTTTGGAGATGCAGAAAAAGCTTTTC
125 AAAAACACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAAAAAAAGC-TTTC
* ** * * * *
125348 TTGCCACCATTTTTGATAGAAAAAAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATACT-TTTAC
189 TTACCACCATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAAAAGCTAGAATAGTCATT-C
* * * *
125412 AAAACCTTGTTCTTTTCT-GGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGAACGATAT
253 AAAACCTTCTTCTTTT-TAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACAATAT
* ** * * *
125476 TGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCCCGACTTCGTGCC
317 TGATGCTTTGGTTTTGAAAGAAAGGCTTTCTCCCCCCCAATTTTTGAAAAGTCTGACTTCGTGCC
* * *
125541 TCAAA-GAAGACAAACATGAATTCTCGTAATAACCTTCATTCCTTTTGTGATTAGGCACTATAAA
382 TCAAATG-AGACAAACATGGATTCTCGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
125605 CACATTCTTCACATTAGGTTAAAGG
446 CACATTCTCCACAATAGGATAAAGG
* * * *
125630 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATCAAAGTTCATCTC
1 ATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTACCATAAAATCAAAGTTCAACCC
*
125695 TTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTCTTCAAGATTGGGAACCAAAAA
66 TTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTT-TTCAAGAATGGGAACCAAAAA
125760 CACATTCCCTTCATTAGGATACATGA
130 CACATTCCCTTCATTAGGATACATGA
125786 TAATTGATGA
Statistics
Matches: 1356, Mismatches: 170, Indels: 85
0.84 0.11 0.05
Matches are distributed among these distances:
462 23 0.02
463 231 0.17
464 28 0.02
465 55 0.04
466 9 0.01
467 55 0.04
469 4 0.00
470 22 0.02
471 130 0.10
472 52 0.04
473 57 0.04
474 34 0.03
475 466 0.34
476 186 0.14
477 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (470 bp):
ATAAGGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTACCATAAAATCAAAGTTCAACCC
TTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTCAAGAATGGGAACCAAAAAC
ACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAAAAAAAGCTTTCTTACCAC
CATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAAAAGCTAGAATAGTCATTCAAAACCTT
CTTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACAATATTGATGCTTT
GGTTTTGAAAGAAAGGCTTTCTCCCCCCCAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGAG
ACAAACATGGATTCTCGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
ACAATAGGATAAAGG
Found at i:132462 original size:42 final size:42
Alignment explanation
Indices: 132407--132525 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
132397 TTCTTCTCTC
* * *
132407 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
*
132449 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
132491 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
132526 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:132466 original size:12 final size:11
Alignment explanation
Indices: 132440--132515 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
132430 TCTATTATCT
*
132440 CTCCTGTCTCTC
1 CTCCTATCTC-C
132452 CTCCTATCATCC
1 CTCCTATC-TCC
132464 CTCCTATCT--
1 CTCCTATCTCC
*
132473 CTACTATCT--
1 CTCCTATCTCC
132482 CTCCTATCTCTC
1 CTCCTATCTC-C
132494 CTCCTATCATCC
1 CTCCTATC-TCC
*
132506 CTCCTCTCTC
1 CTCCTATCTC
132516 TTCTTTCTCT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 3 0.05
12 32 0.58
13 4 0.07
ACGTcount: A:0.11, C:0.49, G:0.01, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:132493 original size:9 final size:9
Alignment explanation
Indices: 132435--132495 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
132425 CTCTCTCTAT
132435 TATCTCTCC
1 TATCTCTCC
*
132444 TGTCTCTCC
1 TATCTCTCC
* *
132453 T-CCTAT-C
1 TATCTCTCC
*
132460 -ATCCCTCC
1 TATCTCTCC
*
132468 TATCTCTAC
1 TATCTCTCC
132477 TATCTCTCC
1 TATCTCTCC
132486 TATCTCTCC
1 TATCTCTCC
132495 T
1 T
132496 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:137223 original size:42 final size:42
Alignment explanation
Indices: 137175--137293 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
137165 TTCTTCTCTC
* *
137175 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
137217 TTCCTCCTATCATCCCTCCTATCTCTACTATCTTTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
137259 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
137294 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:143124 original size:940 final size:939
Alignment explanation
Indices: 138909--143811 Score: 7642
Period size: 940 Copynumber: 5.2 Consensus size: 939
138899 TTTCATCAAT
138909 AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
1 AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
*
138974 TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTAAGGATTTGGCACCATAA
66 TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGCACCATAA
* *
139039 ACGTAGTTTTGTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTCCCC
131 ACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTCCCC
*
139104 CCCAATTTTTGCAAGGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTTGTAATGATCT
196 CCCAATTTTTGCAAGGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCCTGTAATGATCT
*
139169 TCATTAATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAT
261 TCATTCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAT
139234 TTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAAAT
326 TTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAAAT
*
139299 AAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTC
391 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTC
* * *
139364 CGTTCATTAGGATACATGACATTGATACTTTGGTGAGGCAGAAAAAGCTTTTTTTGCCACCATTT
456 CCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTT
* *
139429 TTGATAGAAATAAAGTTTGTCTCTTAAATAGGAAAAGCTAGATTAGTCTTTCAAAACCTTGTTCT
521 TTGATAGAAATAAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATAGTCTTACAAAACCTTGTTC-
*
139494 TTTTTTGGATTAGGCCCCATAAACGTAGTATTCTCATAAGGATGCACGATATTGATGCTTTGGTT
585 TTTTTTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTT
139559 TTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTCGTGCCTCAAAGGAGACAA
650 TTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTCGTGCCTCAAAGGAGACAA
139624 ACTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACAT
715 ACTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACAT
* *
139689 TAGGTTAAAGGATAATGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTACCTACCATAAAATCA
780 TAGGTTAAAGGATAATGAT-ATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATCA
*
139754 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTTCCCATTTTTTTTCAAAACCA
844 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTTCAAAACCA
*
139819 AAAATACATTCCCTTCATTAGGATACATGAC
909 AAAACACATTCCCTTCATTAGGATACATGAC
*
139850 AATGATGCTTTGGTGATGCAAAAAAAGCTTCCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
1 AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
*
139915 TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCTTTTTAGGATTTGGCACCATAA
66 TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGCACCATAA
* *
139980 ATGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGCTTTGAAAGAAATGCTTTCTCCCC
131 ACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTCCCC
* * * *
140045 CCCAATTTTTGCAAAGTCTGACTTTGTGCCTCAAATGAGACAAACATTGATTCTTGTAGTGATCT
196 CCCAATTTTTGCAAGGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCCTGTAATGATCT
*
140110 TCATTCATTTTTTGATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAT
261 TCATTCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAT
* * *
140175 TTTTTTTTCCATGAAAATCTTTTCTTTGCCTTATTTACC-TAAAATCAAAGTTCAACCCTTAAAT
326 TTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAAAT
* * *
140239 AAGACAAGCATCGATTCTCGTAGCAGTCTCCATTCATTTCAAGAATGGGAACCAAAAACACATTC
391 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTC
* *
140304 CCTTCATTAGGATACATGACATTGATACTTTCGAGATGCAGAAAAAGCTTTTCTTGCCACCATTT
456 CCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTT
* * * *
140369 TTGATAGAAATAAAGTTTGTCTCTTAAATAGGAAAAGCTAAAATACTTTTACAAAACCGTGTTCT
521 TTGATAGAAATAAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATAGTCTTACAAAACCTTGTTCT
* *
140434 TTTCTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGCTT
586 TTTTTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTT
* * ** * *
140499 TGAAAGAAATGCTTTCTCCCCCCCAATTTTTGAAAAG-TCTGACTTCGTGCCTCAAATGAGACAA
651 TTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCT-TGACTTCGTGCCTCAAAGGAGACAA
* * * * * * *
140563 ACATT-GATTCTTGTAGTGATCTTCATTCATTTTTTGATTAGGTATTATAAACACATTCTCCACA
715 AC-TTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACA
* * * * * *
140627 ATAGGATAAAGGATAAGGATGATTTTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACC
779 TTAGGTTAAAGGAT-A--ATGA-TATTTTCTTTTGCATGGAAATCTTTTCTTTACC-----TACC
* * * * * *
140692 TTAATATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCATAATAG-TCTCCA-TTCTT
835 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTC-CCATTTTTT
*
140755 TTCAAGAATGGGAACCAAAAACACATTCCGTTCATTAGGATACATGAC
899 TTC---AA----AACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * * * * * *
140803 ATTGATACTTTGGTGAGGCAGAAAAAGCTTTTTTTGCCACCATTTTTGATAGAAAT-AAAGTTTG
1 AATGATGCTTTGGTGATGCAAAAAAAGC-TTTCTTACCATCGTTTTTGATAG-AATCAAAGCTTG
* * * * * * * * * *
140867 TCTCTTAAATAGGAAAAGCTAGATTAGTCTTTCAAAACCTTGTTCTTTTTTTGGATTAGGCCCCA
64 TCTCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTC-CTTTTAGGATTTGGCACCA
* * *
140932 TAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTT
128 TAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTC
* * * * * *
140997 GCCCCTAATTTTTGAAAAG-CTTGACTTCGTGCCTCAAAGGAGACAAACATGGATT-CTCGTAAT
193 CCCCCCAATTTTTGCAAGGTC-TGACTTCGTGCCTCAAATGAGACAAACATTGATTCCT-GTAAT
* * * * * * * *
141060 GACCTTCATTCATTTTCTGATTATGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATG
256 GATCTTCATTCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGG
* * * * * *
141125 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC-TA----CCATAAAATCAAAGTTCATCCCT
321 ATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCT
* *
141185 TAAATAAGACAAGCATCGATTCTCGTAACAGT-TCCCATTTTTTTTC---AA----AACCAAAAA
386 TAAATAAGACAAGCATCGATTCTCATAACAGTCT-CCA-TTCTTTTCAAGAATGGGAACCAAAAA
* * * *
141242 CACATTCCCTTCATTAGGATACATGACTTTAATGCTTTGGTGATACAGAAAAAGCTTTTCTTGCC
449 CACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAGAAAAAGCTTTTCTTGCC
* * * * * * *
141307 CCCGTTTTTGATA-AAATCAAAGTTTGTCTCTTAAATAAGACAAGCTAGAATAGTCATACTAACC
514 ACCATTTTTGATAGAAAT-AAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATAGTCTTACAAAAC
** * * * * * *
141371 CTTGTTCTTTTCAGGATTTGGCGCCATAAACGTAGTTTTCTCAAAAGGTTGCACGATATTTATGC
578 CTTGTTCTTTTTTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGC
* * * * * * * * * *
141436 TTTGGTTTTGACAGAAATGCTTTCTTCCCCCCAAATTTTGAAAAGCCTAACTTCGTACCTCAAAT
643 TTTGGTTTTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTCGTGCCTCAAAG
* * * * * * *
141501 GAGATAAACATGAATTCTAGTAATGACCTTTATTCATTTTGTGATTAGGCACTA-AGAACACTTT
708 GAGACAAACTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATA-AACACATT
* *
141565 CTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGTATGGAAATCTTTTCTTTACCTACCT
772 CTTCACATTAGGTTAAAGGATAATGAT-ATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCA
141630 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC-GATTCCCATTTTTTT
836 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TTCCCATTTTTTT
141694 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
900 TC-A-A-----AACCAAAAACACATTCCCTTCATTAGGATACATGAC
141741 AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
1 AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
*
141806 TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGAACCATAA
66 TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGCACCATAA
*
141871 ACGTAGTCTTGTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTCCCC
131 ACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTCCCC
141936 CCCAATTTTTGCAAGGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCCTGTAATGATCT
196 CCCAATTTTTGCAAGGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCCTGTAATGATCT
142001 TCATTCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAT
261 TCATTCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAT
142066 TTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAAAT
326 TTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAAAT
* *
142131 AAGACAAGCAACGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAGCACATTC
391 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTC
*
142196 CCTTCATTAGGATACATGACATTGAAACTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTT
456 CCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTT
*
142261 TTGATAGAAATAAAGTTTGTCTCCTAAATAGGAAAAGCTAGAATAGTCTTACAAAACCTTGTTCT
521 TTGATAGAAATAAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATAGTCTTACAAAACCTTGTTCT
142326 TTTTTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTT
586 TTTTTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTT
142391 TTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTCGTGCCTCAAAGGAGACAAA
651 TTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTCGTGCCTCAAAGGAGACAAA
142456 CTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACATT
716 CTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACATT
* *
142521 AGGTAAAAGGATAATGATAATTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATC-AA
781 AGGTTAAAGGATAATGATATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATCAAA
* * *
142585 GTTCATCCCTTAAATAAGATAAGCATCGATACTTGTAACAGTTCCCATTTTTTTTCAAAACCAAA
846 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTTCAAAACCAAA
* *
142650 AACACATTCCCTTCATTAGGATACAGGAT
911 AACACATTCCCTTCATTAGGATACATGAC
*
142679 ATTGATGCTTTGGTGATGCAAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGT
1 AATGATGCTTTGGTGATGC-AAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGT
*
142744 CTCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGAACCATA
65 CTCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGCACCATA
*
142809 AACGTAGTCTTGTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTCCC
130 AACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCT-CC
*
142874 CCCCCAATTTTTGCAAGGTCTGACTTCGTGTCTCAAATGAGACAAACATTGATTCCTGTAATGAT
194 CCCCCAATTTTTGCAAGGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCCTGTAATGAT
* *
142939 CTTCAATCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATA
259 CTTCATTCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATG
143004 ATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAA
324 ATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAA
*
143069 ATAAGACAAGCAACGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACAT
389 ATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACAT
*
143134 TCCCTTCATTAGGATACATGACATTGATACTTTGGTGATACAGAAAAAGCTTTTCTTGCCACCAT
454 TCCCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCAT
*
143199 TTTTGATAGAAATAAAGTTTGTCTCTTAAACAGGAAAAGCTAGAATAGTCTTACAAAACCTTGTT
519 TTTTGATAGAAATAAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATAGTCTTACAAAACCTTGTT
*
143264 CTTTTTTGGATTAGGCCCCATAAACGTAATCTTCTCATAAGGATGCACGATATTGATGCTTTGGT
584 CTTTTTTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGT
*
143329 TTTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTTGTGCCTCAAAGGAGACA
649 TTTTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTCGTGCCTCAAAGGAGACA
143394 AACTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACA
714 AACTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACA
143459 TTAGGTTAAAGGATAATGATATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATCA
779 TTAGGTTAAAGGATAATGATATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATCA
* * *
143524 AAGTTCGTCCCTTAAATAAAAGAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTTCAAAACCA
844 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTTCAAAACCA
* *
143589 AAAACGCATTCCCTTCAATAGGATACATGAC
909 AAAACACATTCCCTTCATTAGGATACATGAC
*
143620 AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCGTCGTTTTTGATAGAATCAAAGCTTGTC
1 AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
* * *
143685 TCTTAAATAAGGGAAGCTTGAATAGTCATTCTAAACCTTCTTCTTTTTAGGATTTGGCACCATAA
66 TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGCACCATAA
143750 ACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTC
131 ACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTC
143812 ATGTGGCTAC
Statistics
Matches: 3614, Mismatches: 289, Indels: 120
0.90 0.07 0.03
Matches are distributed among these distances:
936 221 0.06
937 124 0.03
938 125 0.03
939 358 0.10
940 1018 0.28
941 509 0.14
942 64 0.02
943 4 0.00
944 8 0.00
945 351 0.10
946 51 0.01
947 365 0.10
948 5 0.00
949 4 0.00
950 3 0.00
951 53 0.01
952 6 0.00
953 58 0.02
954 68 0.02
955 219 0.06
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (939 bp):
AATGATGCTTTGGTGATGCAAAAAAAGCTTTCTTACCATCGTTTTTGATAGAATCAAAGCTTGTC
TCTTAAATAAGAGAAGCTAGAATAGTCATTCTAAACCTTCTTCCTTTTAGGATTTGGCACCATAA
ACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTCCCC
CCCAATTTTTGCAAGGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCCTGTAATGATCT
TCATTCATTTTTTAATTAGGCACTATAAACACATTCTCCACAATAGGATAAAGGATAAGGATGAT
TTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCAACCCTTAAAT
AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTC
CCTTCATTAGGATACATGACATTGATACTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTT
TTGATAGAAATAAAGTTTGTCTCTTAAATAGGAAAAGCTAGAATAGTCTTACAAAACCTTGTTCT
TTTTTGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTT
TTAAAGAAAGGCTTTCTTGCCCCTAATTTTTGAAAAGCTTGACTTCGTGCCTCAAAGGAGACAAA
CTTGGATTCTCGTAATGACCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTTCACATT
AGGTTAAAGGATAATGATATTTTCTTTTGCATGGAAATCTTTTCTTTACCTACCATAAAATCAAA
GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTTCAAAACCAAA
AACACATTCCCTTCATTAGGATACATGAC
Found at i:144108 original size:18 final size:18
Alignment explanation
Indices: 144087--144157 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
144077 CCTGTCATCC
144087 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATTATCT
*
144105 CTCCTGTCTCTCCTCTTATCAT
1 CTCC--TCTCT-CTATTATC-T
* *
144127 CCCTCCTATCTCTACTATCT
1 --CTCCTCTCTCTATTATCT
*
144147 CTCCTGTCTCT
1 CTCCTCTCTCT
144158 CCTCCTATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
18 14 0.33
20 6 0.14
21 13 0.31
22 5 0.12
24 4 0.10
ACGTcount: A:0.10, C:0.42, G:0.03, T:0.45
Consensus pattern (18 bp):
CTCCTCTCTCTATTATCT
Found at i:144127 original size:42 final size:42
Alignment explanation
Indices: 144072--144190 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
144062 TTCTTCTCTC
* *
144072 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
144114 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
144156 CTCCTCCTATCATCCCTTCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
144191 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:145839 original size:335 final size:337
Alignment explanation
Indices: 145139--146150 Score: 1911
Period size: 335 Copynumber: 3.0 Consensus size: 337
145129 AGGTTGCCTA
145139 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
1 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
145204 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGA
66 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGA
145269 TTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
131 TTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
*
145334 GCTCACTCAAGAACCTAAGAATCACACTCTCACACAAAATGTGTTTAATATGCAAATATCAATGT
196 GCTCACTCAAGAACCTAAGAATCACA--CTCACACAAAATGTGTTTAATCTGCAAATATCAATGT
*
145399 CTGCCCTCGTTATTGGTCCTCGAAATCCTTCCAATGCCTTCAGGTCTTTGTCTTCAATGGACCTT
259 CTGCCCTCGTTATTGGTCCTCGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTT
145464 CCTTGGTTTTCATC
324 CCTTGGTTTTCATC
* *
145478 AATAATGATCTTGAAATGGATTTCTAACAATAAACAAAATTATTGATGCAAGAACAGAAATTGAA
1 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
145543 AGAAGCA-AAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGA
66 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGA
145607 TTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
131 TTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
145672 GCTCACTCAAGAACCTAA-AATCACACTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCT
196 GCTCACTCAAGAACCTAAGAATCACACTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCT
145736 GCCCTCGTTATTGGTCCTCGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCC
261 GCCCTCGTTATTGGTCCTCGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCC
145801 TTGGTTTTCATC
326 TTGGTTTTCATC
*
145813 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAAAAATTGAA
1 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
*
145878 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCATAATCACAAGA
66 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGA
145943 TTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
131 TTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
*
146008 GCTCACTCAAGAACCTAAGAATCACACTCACACAAAATGTGTTTAATCTGCAAATATCAATGTTT
196 GCTCACTCAAGAACCTAAGAATCACACTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCT
* *
146073 GCCCTCATTATTGGTCCTAGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCC
261 GCCCTCGTTATTGGTCCTCGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCC
146138 TTGGTTTTCATC
326 TTGGTTTTCATC
146150 A
1 A
146151 GCACTTTAAC
Statistics
Matches: 660, Mismatches: 11, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
335 183 0.28
336 139 0.21
337 128 0.19
338 140 0.21
339 70 0.11
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (337 bp):
AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAAGGATGGCGCCACAATCACAAGA
TTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
GCTCACTCAAGAACCTAAGAATCACACTCACACAAAATGTGTTTAATCTGCAAATATCAATGTCT
GCCCTCGTTATTGGTCCTCGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCC
TTGGTTTTCATC
Found at i:146905 original size:317 final size:316
Alignment explanation
Indices: 146502--147131 Score: 972
Period size: 317 Copynumber: 2.0 Consensus size: 316
146492 GATGCACGAT
*
146502 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCTAATTATTGCAAAGTCCGACTTCCTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTATTGCAAAGTCCGACTTCCTG
* * *
146567 CCTCAAATGAGACAAACATTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGACACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGAAATGATCTTCATTAATTTTGTGATTAGACACTATAA
* * * *
146632 ACAAATTCTTCACATTAGGATAAAGGATAAGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTG
131 ACAAATTCTCCACATTAGGATAAAGGATAAGGATGATTGTTTTTTGCACGAAAATC-TTTCTTTG
* * *
146697 CCTTTTTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATCGATTCTCGTAACAATC
* * * **
146762 TCCATTCTTTTCATGAATGGGAACTAAAATCACATTCTCTTCGTTAGGATACATGAC
260 TCCATTCTTTTCAAGAATGGGAACCAAAATCACATTCCCTTCAATAGGATACATGAC
* * ** *
146819 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTTTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTATTGCAAAGTCCGACTTCCTG
** *
146884 CCTCAAATGAGACAAACATTGATTCTAGAAATGATCTTCATTAATTTTGTGATTAGGTACTTTAA
66 CCTCAAATGAGACAAACATTGATTCTAGAAATGATCTTCATTAATTTTGTGATTAGACACTATAA
* * *
146949 ACACATTCTCCACATTAGGTTATAGGATAAGGATGATTGTTTTTTGCACGAAAATCTTTCTTTGC
131 ACAAATTCTCCACATTAGGATAAAGGATAAGGATGATTGTTTTTTGCACGAAAATCTTTCTTTGC
* *
147014 CTTATTTACCTTAAAATCATAGTTCAACCCTTAAATAAGACAAACATTGATTCTCGTAACAATCT
196 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATCGATTCTCGTAACAATCT
* *
147079 CCATTCTTTTCAAGATTGGGTACCAAAATCACATTCCCTTCAATAGGATACAT
261 CCATTCTTTTCAAGAATGGGAACCAAAATCACATTCCCTTCAATAGGATACAT
147132 TTCAATAATG
Statistics
Matches: 282, Mismatches: 31, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
316 115 0.41
317 167 0.59
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (316 bp):
ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTATTGCAAAGTCCGACTTCCTG
CCTCAAATGAGACAAACATTGATTCTAGAAATGATCTTCATTAATTTTGTGATTAGACACTATAA
ACAAATTCTCCACATTAGGATAAAGGATAAGGATGATTGTTTTTTGCACGAAAATCTTTCTTTGC
CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATCGATTCTCGTAACAATCT
CCATTCTTTTCAAGAATGGGAACCAAAATCACATTCCCTTCAATAGGATACATGAC
Found at i:147802 original size:476 final size:475
Alignment explanation
Indices: 146819--152746 Score: 7714
Period size: 477 Copynumber: 12.5 Consensus size: 475
146809 GATACATGAC
*
146819 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTTTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* * * *
146884 CCTCAAATGAGACAAACATTGATTCTAGAAATGATCTTCATTAATTTTGTGATTAGGTACTTTAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
146949 ACACATTCTCCACATTAGGTTATAGGATAAGGATGATTGTTTTTTGCACGAAAATC-TTTCTTTG
131 ACACATTCTCCACATTAGGATAAAGGATAAGGATGATT-TTTTTTGCATGGAAATCTTTTCTTTG
* * * *
147013 CCTTATTTACCTTAAAATCATAGTTCAACCCTTAAATAAGACAAACATTGATTCTCGTAACAATC
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
* * * * ** * * *
147078 TCCATTCTTTTCAAGATTGGGTACCAAAATCACATTCCCTTCAATAGGATACATTTCAATAATGA
260 TCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
147143 TTTGGTGACGAAAAAAAAGCTTTTCCTT-CCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTGAT
325 TTTGGTGATGCAAAAAAAGCTTTT-CTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAA
* * *
147207 ATGAA-AGAAGCTAGAATAGTCATACTAAACCTTATTCTTCTCAGGATTTGGCACCATAAATGTA
389 AT-AAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGTA
***
147271 GTCTTCTCATAAGGATTTGCGAT
453 GTCTTCTCATAAGGATGCACGAT
* * * *
147294 ATTGATGCTTTGGTTTTGAAAGGAATGCTTTCTTCCCCCTAATTTTTGTAAAGTTTGACTTCGTT
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* *
147359 CCTCAAATGAGACAAAAACTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
147424 ACACATTCTCCACATTAGGATACAGGATAAGGATGATTTTTTTT-TATGGAAATTTTTTCTTTGC
131 ACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGGAAATCTTTTCTTTGC
* ** * * * * *
147488 CTTATTTACCCTAAAATCCCAGCTCAACCTTTAAATAAGATAAGCATCAATTCTTGTAACAGTCT
196 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * *
147553 CCTTTTTTTTCTCAAGAATGGGAACCAAAAATACATTCCCTTCGTTAGGATACATGACATTGATG
261 CC-ATTCTTT-TCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * *
147618 CTTTGGTGACGCAAAAAAAGCTTTTGTTGCCATCGTTTTTGAAAAAATCAAAGCTTGCCTCTTAA
324 CTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAA
* * * * *
147683 ATAAGGGATGCTAGAATAGTCATACTAAACCTTGTTCTTTTCTA-GATTAGACACCGTAAACGTA
389 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTC-AGGATTTGGCACCATAAACGTA
*
147747 GTCTTCTCATAAGGATGCATGAT
453 GTCTTCTCATAAGGATGCACGAT
* * * * *
147770 ATTGATGCTTTAGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* * * * *
147835 CCTCAAATGACACAAACATGGATTCTGGTAATGACCTTCATTCATTTTGTGATAAGGCACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * **
147900 ACACATTC-CTTACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCAACGAAATCTTTTCTTT
131 ACACATTCTC-CACATTAGGATAAAGGATAAGGATGATTTT-TTTTGCATGGAAATCTTTTCTTT
* * * * *
147964 GCCTAATTTACCTTAAAATCAAAGTTCATCCCTTAAA-ATAGATAAGCATTGATTCTCATAACAG
194 GCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATA-AGACAAGCATCGATTCTCGTAACAG
* * * *
148028 T-TCCCATTTTTTTCAAGATTGGTAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGA
258 TCT-CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
*
148092 TGCTTTTGG-GATGCAAAAAAAG--TTT-TT-CCTATCCGTTTTTGATAAAATCAAAGTTTATCT
322 TGC-TTTGGTGATGCAAAAAAAGCTTTTCTTGCC-A-CCGTTTTTGATAAAATCAAAGTTTGTCT
*
148152 CTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATGTGGCACCATAAA
384 CTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAA
*
148217 CGTAGTCTTCTCATTAGGATGCACGAT
449 CGTAGTCTTCTCATAAGGATGCACGAT
*
148244 ATTGATGCTTTGGTTTTGAAA-AGAATGCTTTCTTCCACCCAATTTTTGTAAAGTCTGACTTCGT
1 ATTGATGCTTTGGTTTTGAAAGA-AATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
* ** * * *
148308 GCCTCAAACGAGACAAACATTGATTCTAGTAACAATCTTCATTCATTTTGTTATGATGCACTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
148373 AATACATTCTCCACATTAGGATGCAA-GATAAGGATGATTTTTTTTTTGCATGAAAATCTTTTCT
130 AACACATTCTCCACATTAGGAT-AAAGGATAAGGATGA--TTTTTTTTGCATGGAAATCTTTTCT
* *
148437 TTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGATAAGCATCGATTCTCGTAATA
192 TTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * ** * * * *
148502 GTCTCCAATCTTTTCACGAATAAGAACCAAAAACGCATTCCTTTCAATAGGATACAAGACATTGA
257 GTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * *
148567 TGCTTTGGTGACGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGATTGCCTCTT
322 TGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
* *
148632 AAATAAGACAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATGTGGCACCATAAACGT
387 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
*
148697 AGTCTTCTCATTAGGATGCACGAT
452 AGTCTTCTCATAAGGATGCACGAT
* *
148721 ATTGATGCTTTGGTTTTGAAA-AGAATGCTTTCGTCCACCCAATTTTTGTAAAGTCTGACTTCGT
1 ATTGATGCTTTGGTTTTGAAAGA-AATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
* ** * * *
148785 GCCTCAAACGAGACAAACATTGATTCTAGTAACAATCTTCATTCATTTTGTTATGATGCACTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
148850 AACACATTCTCCACATTAGGATGCAA-CATAAGGATGATTTTTTTTTTGCATGAAAATCTTTTCT
130 AACACATTCTCCACATTAGGAT-AAAGGATAAGGATGA--TTTTTTTTGCATGGAAATCTTTTCT
* * *
148914 TTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGATAAGCATCAATTCTCGTAATA
192 TTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * ** * * *
148979 GTCTCCAATCTTTTCACGAATAAGAACCAAAAACGCATTCCTTTCAATAGGATACATGACATTGA
257 GTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
*
149044 TGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGCCTCTT
322 TGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
* * *
149109 AAATAAGACAAGATAGAATAGTAATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
387 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
* *
149174 AGTTTTCTCATAAAGATGCACGAT
452 AGTCTTCTCATAAGGATGCACGAT
* * ** * * * *
149198 ATTTG-TGCTTTGGTTTTGAAAGAAATGCTGTCTACCCCCCAAAATTTGAAAAGCCTAACTTTGT
1 A-TTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
*
149262 ACCTCAAATGAGACAAACA-TGAATTCTAGTAATGA-CATTCATTCATTTTGTGATTAGGCACTA
65 GCCTCAAATGAGACAAACATTG-ATTCTAGTAATGATC-TTCATTCATTTTGTGATTAGGCACTA
* * * * * * * *
149325 TAAACACATTCTTCACATTAAGTTAAAGCATAATGATGATTTTCTTTGGTATGGAAA--TATT-T
128 TAAACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTT-TTTTGCATGGAAATCTTTTCT
* ** * ** *
149387 TAG--TTACCTACCTTTAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGAAACA
192 TTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * *
149450 GT-TCGCATTTTTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACAAT
257 GTCTC-CA-TTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * * *
149514 GATGCTTTGGTGATTCGAAAAAAGCTTTTCTTACCGCCGTTTGTGATACAATCAAAGCTTGTCTC
320 GATGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTC
* * * *
149579 TTAAATAAGATAAGCTAGAATAGTCATACTAAACCTTCTTCTTTTTAGGATTTGGCACAATAAAC
385 TTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAAC
*
149644 GTAGTCTTCTCATAAGGTTGCACGAT
450 GTAGTCTTCTCATAAGGATGCACGAT
149670 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* *
149735 CCTCAAATGAGACAAACTTTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* *
149800 ACACATTCTCCACATTAGGATAAATGATAAGGATGATTTTTTTTGCATGAAAATCTTTTCTTTGC
131 ACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGGAAATCTTTTCTTTGC
* * * *
149865 CTTATTTACCTTAAAATCAAAGTTCAACCGTTAAATAGGACAAGCATCAATTCTCGTAATAGTCT
196 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * *
149930 CCACTCTTTTCAAGAATGGGAACCAAAAATATATTCCCTTCATTAGGATACACGACATTGATGCT
261 CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
149995 ATGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTTTTGGTAGAAAT-AAAGTTTGTCTTTTATA
326 TTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATA-AAATCAAAGTTTGTCTCTTAAA
* * * *
150059 TAAGAGAAGCTATAATAGTCATACTAAACCTTGTTTTTTTCTGGATTAGGCACCATAAACGTAGT
390 TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGTAGT
150124 CTTCTCATAAGGATGCACGAT
455 CTTCTCATAAGGATGCACGAT
* * * * * *
150145 ATTGATACTTTGGTTTTTAAAGAAAGGCTTTCTTGCCCCCAATTTTTG-AAGAGCCCGACTTCGT
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAA-AGTCTGACTTCGT
* * * * * * *
150209 GCCTCAAATAAGACAAACATGGATTCTCGTAATGACCATCATTCATTTTTTGATAAGGCACTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
150274 AACACATTCTTCACATTAGGTTAAAGGATAATGATCATTTTCTTTTGCAAGGAAATCTTTTCTTT
130 AACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTT-TTTTGCATGGAAATCTTTTCTTT
* * *
150339 TCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGT
194 GCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
* * * * *
150404 -TACCATTTTTTTCAAGATTGGTAACCAAAAACACATTCCCTTCATTAGGATACAAGACAATGAT
259 CT-CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** *
150468 GCTTTGGGGATGCAAAAAAAAGCTTTTCCTATCGCCGTTTTTGATAAAATCAAAGTTTGTCTCTT
323 GCTTTGGTGATGC-AAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
150533 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
387 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
* *
150598 AGTCTTCCCATAAGGATGCATGAT
452 AGTCTTCTCATAAGGATGCACGAT
** * *
150622 ATTGACACTTTGGTTTTGAAA-AGAACGCTTTCTTCCCCTCAATTTTTGTAAAGTCTGACTTCGT
1 ATTGATGCTTTGGTTTTGAAAGA-AATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
*
150686 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGAATAGGCACTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
150751 AACACATTCTACACATTAGGATACAGGATAAGAATGA-TTTTTTTGCATGAAAATCTTTTCTTTG
130 AACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGGAAATCTTTTCTTTG
* ** * * * *
150815 CCATATTTATTTTAAAATCAAAGTTCAACCCTTAAATCAGACAAGCAACGATTCTTGTAATAGTC
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
* * * *
150880 TCCCA-TCTTTTGAAGAA-GAGGAACCAAAAACACATTCCTTTGAATAGGATACATGACATTGAT
260 T-CCATTCTTTTCAAGAATG-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
** *
150943 GCTTTGGTGACACAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
323 GCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
* *
151008 AATAAGAAAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGACTTGGCACCATAAACGTA
388 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGTA
* * *
151073 GTTTTCTCAAAAGGATGCATGAT
453 GTCTTCTCATAAGGATGCACGAT
* * * * * *
151096 ATTTATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAAATTTTGAAAAGCCTAACTTCGTA
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* ** *
151161 CTTCAAATGAGACAAACA-TGAATTCTAGTAATGGCCTTTATTCATTTTGTGATTAGGCACTATA
66 CCTCAAATGAGACAAACATTG-ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
151225 AACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGTATGGAAATCTTTTCTTT
130 AACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTT-TTTTGCATGGAAATCTTTTCTTT
* * * *
151290 ACC-----TACCTTAAAATCACAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACGAT
194 GCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAAC-AG
* * * *
151350 TC-CCATTTTTCTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACAATGA
258 TCTCCATTCTT-TTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
** * * * * *
151414 TGCTTTACTGATGC-AAAAAAGCTTTTCTTACCGCCGTTTATGATACAATCAAAGCTTGTCTCTT
322 TGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
* * *
151478 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTCTTCTTTTTAGGATTTGGCACTATAAACGT
387 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
*
151543 AGTCTTCTCATAAGGATGGACGAT
452 AGTCTTCTCATAAGGATGCACGAT
*
151567 ATTGATGCTTTGGTTTTGAAAGAAATGTTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* * *
151632 CCTCAAATGAGACAAACTTTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGACACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
*
151697 ACACATTCTCCACATTAGGATAAAGGATAAGGATGACTTTTTTTTGCATGAAAATCTTTTCTTTG
131 ACACATTCTCCACATTAGGATAAAGGATAAGGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTG
* * * *
151762 TCTTATTTACCTTAAAATCAAAGTTCAACCGTTAAATAGGACAAGCATCAATTCTCGTAACAGTC
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
* * * *
151827 TCCACTCTTTTCAAGAATGGGAACCAAAAATATATT--C--CATTAGGATACACGACATTGATGC
260 TCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
151888 TATGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTTTTGGTAGAAAT-AAAGTTTGTCT-TT--
325 TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATA-AAATCAAAGTTTGTCTCTTAA
* * * * * *
151949 GTAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTTTTTTCTGGATTAGGCATCATAAATGTAG
389 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGTAG
* *
152014 TATTCTCATAAAGATGCACGAT
454 TCTTCTCATAAGGATGCACGAT
* * * * ** *
152036 ATTGATGCTTTAGTTTTTAAAGAAAGGCTTTTTTCCCCCCAAAATTTGAAAAGTCTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* * * * * * * *
152101 CCTCAAGTGCGATAAACATGGATTC-CGATAATGACCTTTATTCATTTTGTGATAAGGCACTATA
66 CCTCAAATGAGACAAACATTGATTCTAG-TAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
152165 AACACATTCTTCACATTAGGTTAAAGGATAATGATCATTTTCTTTTGCAAGGAAATCTTTTCTTT
130 AACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTT-TTTTGCATGGAAATCTTTTCTTT
* *
152230 GCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGT
194 GCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
* * * *
152295 -TCCCA-TCTTTTTCAAGATTGGTAACCAAAAACACATTCCCTTCATTAGGATACAAGACAATGA
259 CT-CCATTC-TTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * *
152358 CGCTTTGGGGATGCAAAAAAAGTTTTTCCTACCGCTGTTTTTGATAAAATCAAAGTTTGTCTCTT
322 TGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
* * *
152423 AAATAAGAGAAGCTAGAATAGTCATACTAAAACATGTTCTTTTCAGAATTTGGCACCATAAACGT
387 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
152488 AGTCTTCTCATAAGGATGCACGAT
452 AGTCTTCTCATAAGGATGCACGAT
*
152512 ATTGATGCTTTGGTTTTGAAAAGAAA-GCTTTCTTCCCCTCAATTTTTGTAAAGTCTGACTTCGT
1 ATTGATGCTTTGGTTTTG-AAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
*
152576 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCGCTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
152641 AACACATTCTCCACATTAGGATACAGGATAAGAACGATTTTTTTTGCATGAAAATCTTTTCTTTG
130 AACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGGAAATCTTTTCTTTG
* * *
152706 CCATATTTACTTTAAAATCAAAGTTTAACCCTTAAATAAGA
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGA
152747 TACATGACAT
Statistics
Matches: 4759, Mismatches: 608, Indels: 172
0.86 0.11 0.03
Matches are distributed among these distances:
468 8 0.00
469 325 0.07
470 5 0.00
471 442 0.09
472 434 0.09
473 91 0.02
474 604 0.13
475 870 0.18
476 900 0.19
477 1001 0.21
478 77 0.02
479 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (475 bp):
ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGGAAATCTTTTCTTTGC
CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
AAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGTAGTC
TTCTCATAAGGATGCACGAT
Found at i:148618 original size:951 final size:948
Alignment explanation
Indices: 146819--152746 Score: 7920
Period size: 951 Copynumber: 6.2 Consensus size: 948
146809 GATACATGAC
*
146819 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTTTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* * * *
146884 CCTCAAATGAGACAAACATTGATTCTAGAAATGATCTTCATTAATTTTGTGATTAGGTACTTTAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
146949 ACACATTCTCCACATTAGGTTATAGGATAAGGATGATTGTTTTTTGCACGAAAATC-TTTCTTTG
131 ACACATTCTCCACATTAGGATAAAGGATAAGGATGATT-TTTTTTGCATGAAAATCTTTTCTTTG
* * ** *
147013 CCTTATTTACCTTAAAATCATAGTTCAACCCTTAAATAAGACAAACATTGATTCTCGTAACAATC
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTC
* * * ** * * *
147078 TCCATTCTTTTCAAGATTGGGTACCAAAATCACATTCCCTTCAATAGGATACATTTCAATAATGA
260 TCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGACATTGATGC
* * * * * *
147143 TTTGGTGACGAAAAAAAAGCTTTTCCTT-CCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTGAT
325 TTTGGTGATGCAAAAAAAGC-TTT-CTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAA
* * *
147207 ATGAA-AGAAGCTAGAATAGTCATACTAAACCTTATTCTTCTCAGGATTTGGCACCATAAATGTA
388 AT-AAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGA-TTGGCACCATAAACGTA
*** * *
147271 GTCTTCTCATAAGGATTTGCGATATTGATGCTTTGGTTTTGAAAGGAATGCTTTCTTCCCCCTAA
451 GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAA
* * ** * * * *
147336 TTTTTGTAAAGTTTGACTTCGTTCCTCAAATGAGACAAAAACTGATTCTAGTAATGATCTTCATT
516 ATTTTGAAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGACCTTCATT
* * * *
147401 CATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATACAGGATAAGGATGATTTT-T
581 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCT
* * * ** * * * *
147465 TTT-TATGGAAATTTTTTCTTTGCCTTATTTACCCTAAAATCCCAGCTCAACCTTTAAATAAGAT
646 TTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * *
147529 AAGCATCAATTCTTGTAACAGTCTCCTTTTTTTTCTCAAGAATGGGAACCAAAAATACATTCCCT
711 AAGCATCGATTCTCGTAACAGT-TCC-ATTTTTT-TCAAGAATGGGAACCAAAAACACATTCCCT
* * * * * * **
147594 TCGTTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTGTTGCCATCGTTTTTG
773 TCATTAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTTG
* * * *
147659 AAAAAATCAAAGCTTGCCTCTTAAATAAGGGATGCTAGAATAGTCATACTAAACCTTGTTCTTTT
838 ATAAAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTT
* * * *
147724 CTA-GATTAGACACCGTAAACGTAGTCTTCTCATAAGGATGCATGAT
903 C-AGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
* * * * *
147770 ATTGATGCTTTAGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* * * * *
147835 CCTCAAATGACACAAACATGGATTCTGGTAATGACCTTCATTCATTTTGTGATAAGGCACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
147900 ACACATTC-CTTACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCAACG-AAATCTTTTCTT
131 ACACATTCTC-CACATTAGGATAAAGGATAAGGATGATTTT-TTTTGC-ATGAAAATCTTTTCTT
* * * ** *
147963 TGCCTAATTTACCTTAAAATCAAAGTTCATCCCTTAAA-ATAGATAAGCATTGATTCTCATAACA
193 TGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATA-AGACAAGCATCAATTCTCGTAACA
* * * * *
148027 GT-TCCCATTTTTTTCAAGATTGGTAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTG
257 GTCT-CCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGACATTG
*
148091 ATGCTTTTGG-GATGCAAAAAAAG-TTT-TT-CCTATCCGTTTTTGATAAAATCAAAGTTTATCT
321 ATGC-TTTGGTGATGCAAAAAAAGCTTTCTTGCC-A-CCGTTTTTGATAAAATCAAAGTTTGTCT
148152 CTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATGTGGCACCATAAA
383 CTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGAT-TGGCACCATAAA
* *
148217 CGTAGTCTTCTCATTAGGATGCACGATATTGATGCTTTGGTTTTGAAA-AGAATGCTTTCTTCCA
447 CGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGA-AATGCTTTCTTCCC
* * * * ** *
148281 CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAACAATCT
511 CCCAAATTTTGAAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGACCT
* * * * * ** *
148346 TCATTCATTTTGTTATGATGCACTATAAATACATTCTCCACATTAGGATGCAA-GATAAGGATGA
576 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG-TTAAAGGATAATGATGA
* * *
148410 TTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAA
640 -TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAA
* * * * * ** *
148475 ATAAGATAAGCATCGATTCTCGTAATAGTCTCCAATCTTTTCACGAATAAGAACCAAAAACGCAT
704 ATAAGACAAGCATCGATTCTCGTAACAGT-TCCATTTTTTTCAAGAATGGGAACCAAAAACACAT
* * * * * *
148540 TCCTTTCAATAGGATACAAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTGCCACCGT
768 TCCCTTCATTAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGT
* * *
148605 TTTTGATAAAATCAAAGATTGCCTCTTAAATAAGACAAGCTAGAATAGTCATACTAAACCTTGTT
833 TTTTGATAAAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTT
* *
148670 CTTTTCAGGATGTGGCACCATAAACGTAGTCTTCTCATTAGGATGCACGAT
898 CTTTTCAGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
* *
148721 ATTGATGCTTTGGTTTTGAAA-AGAATGCTTTCGTCCACCCAATTTTTGTAAAGTCTGACTTCGT
1 ATTGATGCTTTGGTTTTGAAAGA-AATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
* ** * * *
148785 GCCTCAAACGAGACAAACATTGATTCTAGTAACAATCTTCATTCATTTTGTTATGATGCACTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
148850 AACACATTCTCCACATTAGGATGCAA-CATAAGGATGATTTTTTTTTTGCATGAAAATCTTTTCT
130 AACACATTCTCCACATTAGGAT-AAAGGATAAGGATGA--TTTTTTTTGCATGAAAATCTTTTCT
* *
148914 TTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGATAAGCATCAATTCTCGTAATA
192 TTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCTCGTAACA
* * * ** * *
148979 GTCTCCAATCTTTTCACGAATAAGAACCAAAAACGCATTCCTTTCAATAGGATACATGACATTGA
257 GTCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGACATTGA
*
149044 TGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGCCTCTT
322 TGCTTTGGTGATGCAAAAAAAGC-TTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
* * *
149109 AAATAAGACAAGATAGAATAGTAATACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGT
386 AAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGA-TTGGCACCATAAACGT
* * * *
149174 AGTTTTCTCATAAAGATGCACGATATTTG-TGCTTTGGTTTTGAAAGAAATGCTGTCTACCCCCC
450 AGTCTTCTCATAAGGATGCACGATA-TTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCC
* * * * *
149238 AAAATTTGAAAAGCCTAACTTTGTACCTCAAATGAGACAAACA-TGAATTCTAGTAATGACATTC
514 AAATTTTGAAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTG-ATTCTAGTAATGACCTTC
* *
149302 ATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAAGTTAAAGCATAATGATGATTT
578 ATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTT
* * * * ** * *
149367 TCTTTGGTATGGAAA--TATT-TTAG--TTACCTACCTTTAAATCAAAGTTCATTCCTTAAATAA
643 TCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
149427 GACAAGCATCGATTCTCGAAACAGTTCGCATTTTTTTTCAAGATTGGGAACCAAAAACATATTCC
708 GACAAGCATCGATTCTCGTAACAGTTC-CA-TTTTTTTCAAGAATGGGAACCAAAAACACATTCC
* * * *
149492 CTTCATTAGGATACATGACAATGATGCTTTGGTGATTCGAAAAAAGCTTTTCTTACCGCCGTTTG
771 CTTCATTAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTT
* * *
149557 TGATACAATCAAAGCTTGTCTCTTAAATAAGATAAGCTAGAATAGTCATACTAAACCTTCTTCTT
836 TGATAAAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTT
* * *
149622 TTTAGGATTTGGCACAATAAACGTAGTCTTCTCATAAGGTTGCACGAT
901 TTCAGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
149670 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* *
149735 CCTCAAATGAGACAAACTTTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
*
149800 ACACATTCTCCACATTAGGATAAATGATAAGGATGATTTTTTTTGCATGAAAATCTTTTCTTTGC
131 ACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGAAAATCTTTTCTTTGC
* * *
149865 CTTATTTACCTTAAAATCAAAGTTCAACCGTTAAATAGGACAAGCATCAATTCTCGTAATAGTCT
196 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCT
* * * * *
149930 CCACTCTTTTCAAGAATGGGAACCAAAAATATATTCCCTTCATTAGGATACACGACATTGATGCT
261 CCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGACATTGATGCT
* * * * * *
149995 ATGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTTTTGGTAGAAAT-AAAGTTTGTCTTTTATA
326 TTGGTGATGCAAAAAAAGC-TTTCTTGCCACCGTTTTTGATA-AAATCAAAGTTTGTCTCTTAAA
* * *
150059 TAAGAGAAGCTATAATAGTCATACTAAACCTTGTTTTTTTCTGGATTAGGCACCATAAACGTAGT
389 TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATT-GGCACCATAAACGTAGT
* * * * *
150124 CTTCTCATAAGGATGCACGATATTGATACTTTGGTTTTTAAAGAAAGGCTTTCTTGCCCCCAATT
453 CTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAAAT
* * * * * *
150189 TTTGAAGAGCCCGACTTCGTGCCTCAAATAAGACAAACATGGATTCTCGTAATGACCATCATTCA
518 TTTGAAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGACCTTCATTCA
* * *
150254 TTTTTTGATAAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATCATTTTCTTT
583 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTT
* *
150319 TGCAAGGAAATCTTTTCTTTTCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
648 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * *
150384 GCATCGATTCTCATAACAGTTACCATTTTTTTCAAGATTGGTAACCAAAAACACATTCCCTTCAT
713 GCATCGATTCTCGTAACAGTT-CCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCAT
* * *
150449 TAGGATACAAGACAATGATGCTTTGGGGATGCAAAAAAAAGCTTTTCCTATCGCCGTTTTTGATA
777 TAGGATACAAGACAATGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTACCGCCGTTTTTGATA
*
150514 AAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAG
841 AAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAG
* *
150579 GATTTGGCACCATAAACGTAGTCTTCCCATAAGGATGCATGAT
906 GATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
** * *
150622 ATTGACACTTTGGTTTTGAAA-AGAACGCTTTCTTCCCCTCAATTTTTGTAAAGTCTGACTTCGT
1 ATTGATGCTTTGGTTTTGAAAGA-AATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
*
150686 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGAATAGGCACTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
150751 AACACATTCTACACATTAGGATACAGGATAAGAATGA-TTTTTTTGCATGAAAATCTTTTCTTTG
130 AACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGAAAATCTTTTCTTTG
* ** * * * * *
150815 CCATATTTATTTTAAAATCAAAGTTCAACCCTTAAATCAGACAAGCAACGATTCTTGTAATAGTC
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTC
* * * *
150880 TCC-CATCTTTTGAAGA-AGAGGAACCAAAAACACATTCCTTTGAATAGGATACATGACATTGAT
260 TCCAC-TCTTTTCAAGATTG-GGAACCAAAAACACATTCCCTTCAATAGGATACATGACATTGAT
** *
150943 GCTTTGGTGACACAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
323 GCTTTGGTGATGCAAAAAAAGC-TTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
*
151008 AATAAGAAAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGACTTGGCACCATAAACGTA
387 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGA-TTGGCACCATAAACGTA
* * * *
151073 GTTTTCTCAAAAGGATGCATGATATTTATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAA
451 GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAA
* * * * *
151138 ATTTTGAAAAGCCTAACTTCGTACTTCAAATGAGACAAACA-TGAATTCTAGTAATGGCCTTTAT
516 ATTTTGAAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTG-ATTCTAGTAATGACCTTCAT
151202 TCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTC
580 TCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTC
* * *
151267 TTTTGTATGGAAATCTTTTCTTTACC-----TACCTTAAAATCACAGTTCATCCCTTAAATAAGA
645 TTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* *
151327 CAAGCATCGATTCTCGTAAC-GATTCCCATTTTTCTTCAAGATTGGGAACCAAAAACACATTCCT
710 CAAGCATCGATTCTCGTAACAG-TT-CCATTTTT-TTCAAGAATGGGAACCAAAAACACATTCCC
* ** *
151391 TTCATTAGGATACATGACAATGATGCTTTACTGATGC-AAAAAAGCTTTTCTTACCGCCGTTTAT
772 TTCATTAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTT
* *
151455 GATACAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTCTTCTTT
837 GATAAAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTT
* * *
151520 TTAGGATTTGGCACTATAAACGTAGTCTTCTCATAAGGATGGACGAT
902 TCAGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
*
151567 ATTGATGCTTTGGTTTTGAAAGAAATGTTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
1 ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
* * *
151632 CCTCAAATGAGACAAACTTTGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGACACTATAA
66 CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
151697 ACACATTCTCCACATTAGGATAAAGGATAAGGATGACTTTTTTTTGCATGAAAATCTTTTCTTTG
131 ACACATTCTCCACATTAGGATAAAGGATAAGGATGA-TTTTTTTTGCATGAAAATCTTTTCTTTG
* * *
151762 TCTTATTTACCTTAAAATCAAAGTTCAACCGTTAAATAGGACAAGCATCAATTCTCGTAACAGTC
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTC
* * * * *
151827 TCCACTCTTTTCAAGAATGGGAACCAAAAATATATT--C--CATTAGGATACACGACATTGATGC
260 TCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGACATTGATGC
* * * *
151888 TATGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTTTTGGTAGAAAT-AAAGTTTGTCT-TT--
325 TTTGGTGATGCAAAAAAAGC-TTTCTTGCCACCGTTTTTGATA-AAATCAAAGTTTGTCTCTTAA
* * * * *
151949 GTAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTTTTTTCTGGATTAGGCATCATAAATGTAG
388 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATT-GGCACCATAAACGTAG
* * * * * *
152014 TATTCTCATAAAGATGCACGATATTGATGCTTTAGTTTTTAAAGAAAGGCTTTTTTCCCCCCAAA
452 TCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAAA
* * * * * * * *
152079 ATTTGAAAAGTCTGACTTCGTGCCTCAAGTGCGATAAACATGGATTC-CGATAATGACCTTTATT
517 TTTTGAAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAG-TAATGACCTTCATT
* *
152143 CATTTTGTGATAAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATCATTTTCT
581 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCT
*
152208 TTTGCAAGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
646 TTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * *
152273 AAGCATCGATTCTCATAACAGTTCCCATCTTTTTCAAGATTGGTAACCAAAAACACATTCCCTTC
711 AAGCATCGATTCTCGTAACAGTT-CCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTC
* * * * *
152338 ATTAGGATACAAGACAATGACGCTTTGGGGATGCAAAAAAAGTTTTTCCTACCGCTGTTTTTGAT
775 ATTAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTTGAT
* * *
152403 AAAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAAACATGTTCTTTTCA
840 AAAATCAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCA
*
152468 GAATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
905 GGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
*
152512 ATTGATGCTTTGGTTTTGAAAAGAAA-GCTTTCTTCCCCTCAATTTTTGTAAAGTCTGACTTCGT
1 ATTGATGCTTTGGTTTTG-AAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT
*
152576 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCGCTATA
65 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
152641 AACACATTCTCCACATTAGGATACAGGATAAGAACGATTTTTTTTGCATGAAAATCTTTTCTTTG
130 AACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGAAAATCTTTTCTTTG
* * *
152706 CCATATTTACTTTAAAATCAAAGTTTAACCCTTAAATAAGA
195 CCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGA
152747 TACATGACAT
Statistics
Matches: 4400, Mismatches: 502, Indels: 157
0.87 0.10 0.03
Matches are distributed among these distances:
939 3 0.00
940 246 0.06
941 1 0.00
942 2 0.00
943 70 0.02
944 127 0.03
945 618 0.14
946 76 0.02
947 597 0.14
948 69 0.02
949 339 0.08
950 270 0.06
951 1000 0.23
952 624 0.14
953 107 0.02
954 241 0.05
955 8 0.00
956 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (948 bp):
ATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTG
CCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCACATTAGGATAAAGGATAAGGATGATTTTTTTTGCATGAAAATCTTTTCTTTGC
CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCT
CCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGACATTGATGCT
TTGGTGATGCAAAAAAAGCTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATA
AGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTGGCACCATAAACGTAGTCTT
CTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAAATTTT
GAAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGACCTTCATTCATTT
TGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGC
ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
TCGATTCTCGTAACAGTTCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGG
ATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTTGATAAAATC
AAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTT
GGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
Found at i:154921 original size:952 final size:947
Alignment explanation
Indices: 152745--155354 Score: 3832
Period size: 952 Copynumber: 2.7 Consensus size: 947
152735 CCTTAAATAA
* * * * * *
152745 GATACATGACATTGATGCTTTGGTGACGCAGAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAAT
1 GATACATGAAAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTTGATAAAAT
*
152810 CAAAGTTTGTCTCTTAAATAAGACAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATT
66 CAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATT
* * *
152875 TGGCACCATAAACGTAGTTTTCTCATAAGGATGCACGTTATTTATGCTTTGGTTTT-AAAAGAAA
131 TGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAAGAAA
* * * * *
152939 TGCTTTCTTCCCCCCAAATTTTGAAAAGCCTAACTTCGTACCTCAAATGAGACAAACA-TGAATT
196 TGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTG-ATT
* * *
153003 -CTAGTAATGATCTTCACTCATTTTGTGATTAGACACTATAAACACATTCTTCACATTAGGATAT
260 CCT-GTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCACATTAGGATAA
* * *
153067 AGGATAAGAATGATTTTTTTTTTTGCATGAAAATCTTTTCTTTGCCATATTTACTTTAAAATCAA
324 AGGATAAGGATGA--TTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
* * * * * * *
153132 AATTCAACCCTTAAATAAGACAAGTAACGATTCTCGTAATAGTCTCCCA-TCTTTTCAAGAATAG
387 AGTTCAACCGTTAAATAAGACAAGCATCAATTCTCGTAACAGTCT-CCATTCTTTTCAAGAATGG
* * * * *
153196 GAACCAAAAACATATTCCTTTCAATAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGC
451 GAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAGAAAAAGC
* * * * *
153261 TTTTCTTGACATCATTTTTGATA-AAATCAAAGTTTGTTTCTTAAATAAGACAAGCTAGAATAGT
516 TTTTCTTGCCACCATTTTTTATAGAAAT-AAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGT
* *
153325 CATACTAAACCTTGTTCTTTTC-AGGATTTGGCACCATAAACGTAGTTTTCTCATAAGGATGCAC
580 CATACTAAACCTTGTTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCAC
* * * * *
153389 GATATTTATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAAA-TTTTGAAAAGCGTAACTT
644 GATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTT-TCCCCAAATTTTTGAAAAGC-TGACTT
*
153453 CGTACCTCAAATGAGACAAACATGAATTCTAGTAATGACCTTCATTCATTTTGTGAATAAGCACT
707 CGTACCTCAAATGAGACAAACATGAATTCTAGCAATGACCTTCATTCATTTTGTGAATAAGCACT
* *
153518 ATAAACACAATCTTCACATTAGGTAAAAGGATAATGATGATTTTTTTTGTATGAAAATCTTTTCT
772 ATAAACACAATCTTCACATTAGGTAAAAGGATAATGATCATTTTTTTTGGATGAAAATCTTTTCT
* * *
153583 TTACCTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACGGTTCC
837 TTACCTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTTCC
* *
153648 CATTTTTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAG
902 CATCTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * * *
153694 GATACATGATAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACTGCCGTTTGTGATACAAT
1 GATACATGAAAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTTGATAAAAT
* * *
153759 CAAAGCTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTCTTCTTTTTAGGATT
66 CAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATT
*
153824 TGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGGTGCTTTGGTTTTG-AAAGAAA
131 TGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAAGAAA
* *
153888 TGCTTTCTTCCCCCCAATTTTCGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACTTTGATTC
196 TGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTC
* * * *
153953 TTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCGCATTAGGATAAAT
261 CTGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCACATTAGGATAAAG
*
154018 GATAAGGATGA-TTTTTTTTGCATGAAAATCTTTTTTTTTTGCCTTATTTACCTTAAAATCAAAG
326 GATAAGGATGATTTTTTTTTGCATGAAAATC--TTTTCTTTGCCTTATTTACCTTAAAATCAAAG
154082 TTCAACCGTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGAATGGGAA
389 TTCAACCGTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGAATGGGAA
*
154147 CCAAAAATGCATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAGAAAAAGCTTT
454 CCAAAAATACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAGAAAAAGCTTT
* * * *
154212 TCTTGCCACCATTTTTTATAGAAATAAAGTGTGTCCCTCAAATAAGAGAAGCTAGAATAGTCGTA
519 TCTTGCCACCATTTTTTATAGAAATAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATA
*
154277 CTAAACCTTGTTTTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATAT
584 CTAAACCTTGTTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATAT
* *
154342 TGATGCTTTAGTTTTTAAAGAAAGGCTTT-TTTCCCCAAATTTTTGAAAAGTCTGACTTCGTGCC
649 TGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTTCCCCAAATTTTTGAAAAG-CTGACTTCGTACC
* * * *
154406 TCAAATGAGATAAACATGGATTCTGGCAATGACCTTCATTCATTTTGTG-ATGAGGCACTATAAA
713 TCAAATGAGACAAACATGAATTCTAGCAATGACCTTCATTCATTTTGTGAAT-AAGCACTATAAA
* * * * *
154470 CACATTCTTCACATTAGGTTAAAGGATAATGATCATTTTCTTTTGGGA-GGAAGTCTTTTCTTTG
777 CACAATCTTCACATTAGGTAAAAGGATAATGATCATTTT-TTTT-GGATGAAAATCTTTTCTTTA
154534 CCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTT
840 CC-----TACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTT
*
154599 CCCATCTTTTTT-AAGATTGGTAACCAAAAACACATTCCCTTCATTAG
900 CCCATCTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* *
154646 GATACCA-GAAAATGATGCTTTAGG-GATGCAAAAAAAGCTTTTCCTACCGCCGTTTTTGGTAAA
1 GATA-CATGAAAATGATGCTTT-GGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTTGATAAA
154709 ATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGA
64 ATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGA
* * *
154774 TTTGGCACTAGAAACGTAGTCTTCTCGTAAGGATGCACGATATTGATGCTTTGGTTTTGAAAAG-
129 TTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAAGA
* * * * *
154838 AATGTTTTCTTCCCCCGAATTTTTGTAAAGTCTGGCTTCGTGCGTCAAATGACACAAACATTGAT
194 AATGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGAT
* *
154903 TCCTGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCATATTAGGATGA
259 TCCTGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCACATTAGGATAA
* * *
154968 AGGATAAGGATGATTTTTTTTTTTTGCATGGAAATCTTATCTTTCCCTTATTTACCTTAAAATCA
324 AGGATAAGGATGA---TTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCA
* * * *
155033 AAGTCCAACCGTTAAATAAGGCAAGCATCAATTCTTGTAACAGTCTCCATTCATTTCAAGAATGG
386 AAGTTCAACCGTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGAATGG
* * *
155098 GAACCAAAAATACAATCCCTTCATTAGGTTACATGACATTGACT-CTTTGGTGATGCAGAAAAAG
451 GAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGA-TGCTTTGGTGATGCAGAAAAAG
*
155162 CTTTTATTGCCACCATTTTTTATAGAAATAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGT
515 CTTTTCTTGCCACCATTTTTTATAGAAATAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGT
* * * *
155227 CACACTAAAACTTGTTCTTTTCTAGATTAGGCACCATAAACATAGGCTTCTCATAAGGATGCACG
580 CATACTAAACCTTGTTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACG
*
155292 ATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTTCCCCCAATTTTTGAAAAGCCTGACTT
645 ATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTTCCCCAAATTTTTGAAAAG-CTGACTT
155355 TGTGATGACA
Statistics
Matches: 1498, Mismatches: 136, Indels: 48
0.89 0.08 0.03
Matches are distributed among these distances:
946 28 0.02
947 117 0.08
948 298 0.20
949 304 0.20
950 3 0.00
952 331 0.22
953 74 0.05
954 297 0.20
955 28 0.02
956 18 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (947 bp):
GATACATGAAAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCGCCGTTTTTGATAAAAT
CAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATT
TGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAAGAAA
TGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTC
CTGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCACATTAGGATAAAG
GATAAGGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
CAACCGTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGAATGGGAACC
AAAAATACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAGAAAAAGCTTTTC
TTGCCACCATTTTTTATAGAAATAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACT
AAACCTTGTTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTG
ATGCTTTGGTTTTTAAAGAAAGGCTTTCTTTCCCCAAATTTTTGAAAAGCTGACTTCGTACCTCA
AATGAGACAAACATGAATTCTAGCAATGACCTTCATTCATTTTGTGAATAAGCACTATAAACACA
ATCTTCACATTAGGTAAAAGGATAATGATCATTTTTTTTGGATGAAAATCTTTTCTTTACCTACC
TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTTCCCATCTTTTT
TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
Found at i:160221 original size:42 final size:42
Alignment explanation
Indices: 160169--160284 Score: 178
Period size: 42 Copynumber: 2.8 Consensus size: 42
160159 TTCTCTCCTG
* *
160169 CTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCTCTC
1 CTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCTC
*
160211 CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCTCTC
1 CTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCTC
* * *
160253 CTTCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTATCATCCCTCCTCTCTCTACTATCTCT
160285 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCTC
Found at i:160226 original size:24 final size:24
Alignment explanation
Indices: 160190--160275 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
160180 CCTCCTCTCT
* * *
160190 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTA
*
160214 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTA
*
160235 CTATC-T--CTCCTGTCTCTCCTT
1 CTATCATCCCTCCTGTCTCTCCTA
*
160256 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
160276 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTA
Found at i:160250 original size:18 final size:18
Alignment explanation
Indices: 160181--160251 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
160171 CCTGTCATCC
* *
160181 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
160199 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
160221 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
160241 CTCCTGTCTCT
1 CTCCTGTCTCT
160252 CCTTCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:161921 original size:22 final size:22
Alignment explanation
Indices: 161893--161937 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
161883 CTTTGTGCCT
161893 CAAACATGGATCCTAGTAATGA
1 CAAACATGGATCCTAGTAATGA
* *
161915 CAAACATGGTTTCTAGTAATGA
1 CAAACATGGATCCTAGTAATGA
161937 C
1 C
161938 CTTCATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (22 bp):
CAAACATGGATCCTAGTAATGA
Found at i:162943 original size:477 final size:476
Alignment explanation
Indices: 161914--162988 Score: 1499
Period size: 477 Copynumber: 2.3 Consensus size: 476
161904 CCTAGTAATG
* * *
161914 ACAAACATGGTTTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACT-TTAACACATTCTCT
1 ACAAACTTGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACA-T-TCT
* * *
161978 TCACATTAGGTTAAAGGATAATGATGATTTTCTTTCGCATGGAAATCGTTTCTTTACC-----TA
64 TCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTA
* *
162038 CCATAAAATCAAAGTTCATCCCTAAAATATGACTAGCATCGATTCTCGTAACAGTTCCCATTTTT
129 CCATAAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTT
*
162103 TCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATACATGACAATGATGCTTTGGTGATC
194 TCAAGAATGGGAACCAAAAACACATTCCATTCATTAGGATACATGACAATGATGCTTTGGTGATC
*** ** *
162168 CAAAAAAAAGCTTTTCCTATTGCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAG
259 CAAAAAAAAGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAAAAG
* *
162233 CTAGAATAGTCATACTAAACCTTCTTCTTTTCAGGATTTGGCACCATAAACGTAGTATTCTCATA
324 CTAGAATAGTCATACTAAACCTTCTTCTTTTCAAGATTAGGCACCATAAACGTAGTATTCTCATA
* * *
162298 AGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCTAATTATTGTAAAG
389 AGGATGCACGATATTGATGCTTTGGGTTTCAAAGAAAGGCTTTCTTCCCCCTAATTATTGTAAAG
* *
162363 TCCAACTTCGTGCCTCAAATGAG
454 TACAACTTCGTGCCTCAAATGAA
* * * * *
162386 ACAAACATT-GATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCAATATAAACAAATTCTC
1 ACAAAC-TTGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT
** * * *
162450 CACATTAGAATAAAGGATAAGGATGATTTTTTTTTTGCGTGGAAATCTTTTCTTTGCCTTATTTA
65 CACATTAGGTTAAAGGATAATGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTA
*
162515 CC-TAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TCTCCATTC
129 CCAT-AAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCGATTCTCGTAACAGTTC-CCATT-
* * * * * *
162578 TTTTCATGAATGGGAACTAAAATCACATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTG
191 TTTTCAAGAATGGGAACCAAAAACACATTCCATTCATTAGGATACATGACAATGATGCTTTGGTG
* * * *
162643 ATGC-AAAAAAAGCTTTTCTTGCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAG
256 ATCCAAAAAAAAGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAA
* * * * *
162707 AAGCTAGACTAGTCATACTAAACCTTGTTCTTTTTAAGATTAGGCACTATAAACGTAGTCTTCTC
321 AAGCTAGAATAGTCATACTAAACCTTCTTCTTTTCAAGATTAGGCACCATAAACGTAGTATTCTC
* *
162772 ATAA-GATTGCACGATATTGATGTTTTGGGTTTCAAAGAAAGGCTTTCTTCCCGCC-AATTTTTG
386 ATAAGGA-TGCACGATATTGATGCTTTGGGTTTCAAAGAAAGGCTTTCTTCCC-CCTAATTATTG
** *
162835 TAAAGTATGACTTCGTGTCTCAAATGAA
449 TAAAGTACAACTTCGTGCCTCAAATGAA
162863 ACAAACTTGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
1 ACAAACTTGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
*
162928 ACATTAGGTTAAAGGATAATGTTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
66 ACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
162989 GATGACAACC
Statistics
Matches: 525, Mismatches: 64, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
471 26 0.05
472 70 0.13
473 7 0.01
476 41 0.08
477 318 0.61
478 63 0.12
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
ACAAACTTGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
ACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACC
ATAAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTC
AAGAATGGGAACCAAAAACACATTCCATTCATTAGGATACATGACAATGATGCTTTGGTGATCCA
AAAAAAAGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAAAAGCT
AGAATAGTCATACTAAACCTTCTTCTTTTCAAGATTAGGCACCATAAACGTAGTATTCTCATAAG
GATGCACGATATTGATGCTTTGGGTTTCAAAGAAAGGCTTTCTTCCCCCTAATTATTGTAAAGTA
CAACTTCGTGCCTCAAATGAA
Found at i:168040 original size:41 final size:42
Alignment explanation
Indices: 167950--168065 Score: 121
Period size: 41 Copynumber: 2.8 Consensus size: 42
167940 TTCTCTCCTC
* * * *
167950 CTCCTGTCATCCCTCCTCTCTCTATTATCTC-TCTTATCTCT
1 CTCCTATCATCCCTCCTATCTCTACTATCTCTTCTTATCACT
*
167991 CTTTCTATCATCCCTCCT-TCTCTACTATCTCTTC-TATCACT
1 C-TCCTATCATCCCTCCTATCTCTACTATCTCTTCTTATCACT
* * *
168032 ACTCCTATCATCCCTTCTATCTCTTCTTTCTCTT
1 -CTCCTATCATCCCTCCTATCTCTACTATCTCTT
168066 TGAGGGCTAC
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 33 0.52
42 30 0.48
ACGTcount: A:0.12, C:0.40, G:0.01, T:0.47
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTATCTCTACTATCTCTTCTTATCACT
Found at i:170879 original size:475 final size:477
Alignment explanation
Indices: 169641--174424 Score: 6398
Period size: 477 Copynumber: 10.0 Consensus size: 477
169631 GTTCTCACCA
* *
169641 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACA-TTT
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * *
169705 ACCTTTTTTTTCAAG-ATAAGGAACCAAAAACACATTCCCTTCATTAGGATACATGATAATT-AT
66 CCCATTTTTTTCAAGAAT-GGGAACCAAAAACACATTCCCTTCATTAGGATACATGA-CATTGAT
* * * *
169768 GCTTTGGTCATGCAAAAAAAGCTTTTCTTGCTACCGTTTTTGATATAATAAAAGTTTGTCTCTTA
129 GCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
* * * * *
169833 AATAAGAAAAGCTAAAATAGTCCTACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACATA
194 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTA
* * * * * * *
169898 G-CTCCTCATAAGGATGCACAATATTGATGGTTTGGGTTTAAAAGAAATGCTTTCTTTCCCCCAA
259 GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAA
* * * *
169962 TTTTTGTAAAGTCTGACTTCATACCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATT
324 TTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
* * *
170027 CATTTTGTGATTAGGCAGTATAAACACATT-TTCCACAATAGGATAAAGGATAAAGATGATTTTT
389 CATTTTGTGATTAGGCACTATAAACACATTCTT-CACATTAGGATAAAGGATAATGATGA--TTT
* *
170091 TTTTTTGCATAGAAATCTTTTCTTTGC
451 TCTTTTGCATGGAAATCTTTTCTTTGC
*
170118 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * *
170183 -CCATTCTTTTCAAGAATGGAAACCAAAAACACATTCCTTTCATTAGGATACATAACATTGATGC
66 CCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
170247 TTCGGTGACGCAGAAAAAGCTTTTCTTGCCACGGTTTTTGATAGAATCAAAGTTTTTCTCTTAAA
131 TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAA
* * * *
170312 TAAGAGAAGCTAGAATAGTCATACTAGACCTTGTTCTTTTCCGGATGAGGCACCATAAACATAGT
196 TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGT
* *
170377 CTTCTCATAAGGATTCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCTCCCCAATT
261 CTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATT
* * *
170442 TTTGTAAAGTCTGACTTCGTGCCTCCAATGAGACAAACATTGATTCTAGTAATGACCTTCATTCT
326 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
*
170507 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTT
391 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
170572 TGCATGGAAATCTTTTCTTTGC
456 TGCATGGAAATCTTTTCTTTGC
*
170594 CTTATTTACCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * *
170659 -CCATTATTTTCAAGAATAGAAACC-AAAACACATTCTCTTCATTAGGATACATGACATTGATGC
66 CCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
**
170722 TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTACCTCTTAAA
131 TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAA
* * * * *
170787 TAAGAGAAGCTAGAATAGTCATACAAAACCTTGTTCTATTCAAGATTAGGCATCATAAGCGTAGT
196 TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGT
* *
170852 CTTCTCATAAGGATGCACGAAATTGATGCTTTGGTTTTTAAAGAAAGCCTTTCTTCCCCCCAATT
261 CTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATT
* * *
170917 CTTGTAAAGTCTGTCTTCGTGCCTCAAATGAGACAAACATGGATTC-AGGTAATGGCCTTCATTC
326 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTA-GTAATGACCTTCATTC
* * *
170981 ATTTTGTGATTTGGCACTATAAACACATTCTCTTAACATTAGGTTAAAGGATAATGATGATTTTC
390 ATTTTGTGATTAGGCACTATAAACACA-T-TCTTCACATTAGGATAAAGGATAATGATGATTTTC
*
171046 TTTTGCATGGAAATCTTTTCTTTAC
453 TTTTGCATGGAAATCTTTTCTTTGC
* * * * *
171071 C-TA-CTA---TAAAGTCAAAGTTCATCCCTCAAATAAGACAAGCATTGATTCTCATAACAGT-T
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * * * *
171130 CCCGTTTTTTTTCAAGATTGGGAACCAAAAACACGTTCCTTTCATTAGAATACCA-GACAATGAT
66 CCC-ATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATA-CATGACATTGAT
* ** * * *
171194 GCTTTGGTGATGCAAAAAAAGATTTTCTTTTCGCTGCTTTTGATAAAATCAAAGTTTGTCTCTTA
129 GCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
* * * * * *
171259 AATAAGAGAAGCTAAAATAGTCATACTAAACCATATTATTTTTAGGATTTGGCACCATAAACGTA
194 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTA
* * * * *
171324 ATCTTCGCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAAAGCTTTCTTCCCCCAAA
259 GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAA
* * * * *
171389 GTTTTGTAATGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTTGTAATGATCTTCATT
324 TTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
* * * * * * *
171454 CATTTTGTGATTAGGCACTATAAACACAGTCTCCACTTTAGGACAAGGGATAAGGATGATTTTTT
389 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA-TTTTC
*
171519 TTTTGCATGGAAATCTTTTTTTTGC
453 TTTTGCATGGAAATCTTTTCTTTGC
* * *
171544 CTTATTTACCTT-AAATCAAAGTTCAACCATTAAATAAGACAAGTATCGATTCTCGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* *
171608 -CCATTCTTTTCAAGAATGGGAACCCAAAAATACATTCCCTTCATTAGGATACATGACATTGATG
66 CCCATTTTTTTCAAGAATGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
*** * * *
171672 CTTTGGTGATGCAAAAATCCCTTTTCTTGCTACCATTTTTGATAAAAAT-AGAGTTTGTCTCTTA
130 CTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGAT-AAAATCAAAGTTTGTCTCTTA
* *
171736 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCTGGATTAGGCACCATAAACGTG
194 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTA
* *
171801 GTCTTCTCATAAGGATGCACGATATTTATGCTTTGGCTTTTAAAGAAAGGCTTTCTTCCCCCCAA
259 GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAA
* * * * *
171866 TTTTTGAAAAGTCTGACTTTGTGGCTCAAAAGAGACAAACATGGATTCTAGTAATGACCTTCACT
324 TTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
* *
171931 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGTTGATTTTCT
389 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCT
** *
171996 TTTGCAAAGAAATATTTTCTTTGC
454 TTTGCATGGAAATCTTTTCTTTGC
* *
172020 CTTATTTACCTTAACATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGT-T
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * * * * * *
172084 CCCATTTTTTTCAAGATTGGGAACTAAAAACACATTCCCTTTAATAGGATGCCTGACAATGATAC
66 CCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* *** * * * * * *
172149 TTTGGTGACGCAAAAAAAAAGCTTTTCCAACCATCATTTTTAATAGAATCAAAGTTTATCTCTTC
131 TTTGGTGATGC--AAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
* * * * *
172214 AATAAGAGAAGCTAGAATAGTCATACCAAACCTTGTTCTTTTCAAGATTTGGCAACATAAAAGTA
194 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTA
* * * *
172279 GTCTTCTCATAAGGTTGCACGATATTGATGCTTTGGTTTTGAAAGGAATGCTTTCTTCCCCCCAA
259 GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAA
** * *
172344 -TTTTGATACGGTCTGACTTCGTGCCTTAAATGAGACAAACATCGG-TTCTAGTAATGATCTTCA
324 TTTTTG-TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT-GGATTCTAGTAATGACCTTCA
* * * * * *
172407 TTTATTTTGTGATTAAGCACTATAAACACATTCTCCACATTAGGATACAGGATAAGGATAATTTT
387 TTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTT
**
172472 -TTTTAAATGGAAATCTTTTCTTTGC
452 CTTTTGCATGGAAATCTTTTCTTTGC
* * * * *
172497 CTTATTTACCTTAAATTCAAAGTTTAACCCTTAAATGAGACAAGCATCGATTCACGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* *
172562 -CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGC
66 CCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * *
172626 TTTGGTGACGTAGAAAAAGCTTTTCTTGCCACCGTTTTTTATAAAATCATAGTTTGCCTTTTAAA
131 TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAA
* * *
172691 TAAAAGAAGCTAGAATAGTCATACTAAACCTTGCTCTTTTCAGGATTAGGCACCATTAACGTAGT
196 TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGT
172756 CTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATT
261 CTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATT
* * * * * * *
172821 TTTATCAAGTCTGACTTCGTGGCTTAAATGAGACAAACATTGATTCTAGTAATGACATTCATTCT
326 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
* *
172886 TTTTGTGTTTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGG-TAATGATGATTTTCTTT
391 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* *
172950 TGCGTGGAAATCCTTTCTTTGC
456 TGCATGGAAATCTTTTCTTTGC
* * *
172972 CTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAACATCGATTTTCGTAACAGT-T
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * * * * *
173036 CCCATTTTTTTTCAAGATTAGGAACCAAAAACACGTTCCTTTTATTAGGATACAAGACAATGATG
66 CCCA-TTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* ** *
173101 CTTTGGTGATGCAAAAAAAGCGTTTCTTATCGCCGTTTTTGATAAAATCAAAGTTTGTCTCTTAA
130 CTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAA
* * *
173166 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTATTCTTTTTAGGATTTGGCACCATAAACGTAG
195 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAG
* * * *
173231 TCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAAAGCTTTCTTCCCCCAAAA
260 TCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAAT
* *
173296 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCATTC
325 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
* * * * *
173361 ATTTTGTGATTAGGCACTATAAACACAGTCTCCACTTTAGGACAAAGGATAAGGATGATTTTTTT
390 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA---TTTT
*
173426 TTTTTGCATGGAAATCTTTTCTTTGC
452 CTTTTGCATGGAAATCTTTTCTTTGC
* * * *
173452 CTTATTTACCTTAAAATCAAAGTTCAACCATTAAATAAGACAAGTATTGATTCTCGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* *
173517 -CCATTCTTTTCAAGAATGGGAACCAAAAATACATTCCCTTCATTAGGATACATGACATTGATGC
66 CCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* *
173581 TTTGGTGATGCAAAAAAACCTTTTCTTGCCACCCTTTTTGATAAAAAT-AAAGTTTGTCTCTTAA
131 TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGAT-AAAATCAAAGTTTGTCTCTTAA
*
173645 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCTGGATTAGGCACCATAAACGTAG
195 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAG
* * *
173710 TCTTCTCATAAGGATGAACGATATTTATGCTTTGG-CTTTAAAGAAAGGCTTTCTTCCCCCCAAT
260 TCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAAT
* * * * *
173774 TTTTGAAAAGTCTGACTTTGTGGCTCAAAAGAGACAAACATGGATTCTAGTAATGACCTTCACTC
325 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
* * *
173839 ATTTTGTGATTAGGCACTACAAACACATTCTTCACATTAGGTTAAAGGATAATGTTGATTTTCTT
390 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
** *
173904 TTGCAAAGAAATATTTTCTTTGC
455 TTGCATGGAAATCTTTTCTTTGC
* *
173927 CTTATTTACCTTAACATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGT-T
1 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * * * * *
173991 CCCATTTTTTTCAAGATTGGGAACTAAAAACACATTCCCTTTAATAGGATGCATGACAATGATAC
66 CCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
*** * * * * * *
174056 TTTGGTGATGCAAAAAAAAGCTTTTCCAACCATCATTTTTAATAGAATCAAAGTTTATCTCTTCA
131 TTTGGTGATGC-AAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAA
* * * * * *
174121 ATAAGTGAAGCTAGAATAGTCATACCAAACCTTGTTCTTTTTAGGATTTGGCAACATAAAAGTAG
195 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAG
* * * *
174186 TCTTCTCATAAGGTTGCACGATATTGATGCTTTGGTTTTGAAAGGAATGCTTTCTTCCCCCCAA-
260 TCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAAT
* * * *
174250 TTTTGATACAGTCTGACTTTGTGCCTTAAATGAGACAAACATCGG-TTCTAGTAATGATCTTCAT
325 TTTTG-TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT-GGATTCTAGTAATGACCTTCAT
* * * * *
174314 TCATTTTGTGA-TAAGCACTATAAACATATTCTCCACATTAGGATACAA-GATAAGGATAATTTT
388 TCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATA-AAGGATAATGATGATTTT
*
174377 -TTTTACATGGAAATCTTTTCTTTGC
452 CTTTTGCATGGAAATCTTTTCTTTGC
*
174402 CTTATTTACCTTAAATTCAAAGT
1 CTTATTTACCTTAAAATCAAAGT
174425 GATGAAAACC
Statistics
Matches: 3751, Mismatches: 507, Indels: 100
0.86 0.12 0.02
Matches are distributed among these distances:
471 1 0.00
472 72 0.02
473 45 0.01
474 298 0.08
475 822 0.22
476 721 0.19
477 933 0.25
478 565 0.15
479 202 0.05
480 91 0.02
481 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (477 bp):
CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
CCCATTTTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAA
TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGT
CTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATT
TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
TGCATGGAAATCTTTTCTTTGC
Found at i:173713 original size:955 final size:951
Alignment explanation
Indices: 169641--174424 Score: 6760
Period size: 955 Copynumber: 5.0 Consensus size: 951
169631 GTTCTCACCA
* * *
169641 CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACA-TTT
1 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * *
169705 ACCTTTTTTTTCAAG-ATAAGGAACCAAAAACACATTCCCTTCATTAGGATACATGATAATT-AT
66 -CCATTCTTTTCAAGAAT-GGGAACCAAAAACACATTCCCTTCATTAGGATACATGA-CATTGAT
* * * *
169768 GCTTTGGTCATGCAAAAAAAGCTTTTCTTGCTACCGTTTTTGATATAATAAAAGTTTGTCTCTTA
128 GCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
* * * * *
169833 AATAAGAAAAGCTAAAATAGTCCTACTAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACATA
193 AATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTA
* * * * * * *
169898 G-CTCCTCATAAGGATGCACAATATTGATGGTTTGGGTTTAAAAGAAATGCTTTCTTTCCCCCAA
258 GTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAA
* * ** * *
169962 TTTTTGTAAAGTCTGACTTCATACCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATT
323 TTTTTATAAAGTCTGACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
* * * *
170027 CATTTTGTGATTAGGCAGTATAAACACATT-TTCCACAATAGGATAAAGGATAAAGATGATTTTT
388 CATTTTGTGATTAGGCACTATAAACACATTCTT-CACATTAGGTTAAAGGATAATGATGA--TTT
* *
170091 TTTTTTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAA
450 TCTTTTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
170156 GACAAGCATCGATTCTCGTAACAG-TCTCCATTCTTTTCAAGAATGGAAACCAAAAACACATTCC
515 GACAAGCATCGATTCTCATAACAGTTC-CCATTTTTTTCAAGATTGGGAACCAAAAACACATTCC
* * * * * * *
170220 TTTCATTAGGATACATA-ACATTGATGCTTCGGTGACGCAGAAAAAGCTTTTCTTGCCACGGTTT
579 TTTTATTAGGATACA-AGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTT
* *
170284 TTGATAGAATCAAAGTTTTTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAGACCTTGTTCT
643 TTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCT
** ** * *
170349 TTTCCGGATGAGGCACCATAAACATAGTCTTCTCATAAGGATTCACGATATTGATGCTTTGGTTT
708 TTTTAGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTT
* * * *
170414 TTAAAGAAAGGCTTTCTTCTCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCCAATGAGACAAA
773 TGAAAGAAAAGCTTTCTTC-CCCCAAATTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAA
* * * *
170479 CATTGATTCTAGTAATGACCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTTCACATT
837 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATT
* * *
170544 AGGTTAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
902 AGGATAAAGGATAAGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
* *
170594 CTTATTTACCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * * *
170659 CCATTATTTTCAAGAATAGAAACC-AAAACACATTCTCTTCATTAGGATACATGACATTGATGCT
66 CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
**
170723 TTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTACCTCTTAAAT
131 TTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
* * * * *
170788 AAGAGAAGCTAGAATAGTCATACAAAACCTTGTTCTATTCAAGATTAGGCATCATAAGCGTAGTC
196 AAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTC
* * *
170853 TTCTCATAAGGATGCACGAAATTGATGCTTTGGTTTTTAAAGAAAGCCTTTCTTCCCCCCAATTC
261 TTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTT
* * * *
170918 TTGTAAAGTCTGTCTTCGTGCCTCAAATGAGACAAACATGGATTC-AGGTAATGGCCTTCATTCA
326 TTATAAAGTCTGACTTCGTGGCTCAAATGAGACAAACATGGATTCTA-GTAATGACCTTCATTCA
* *
170982 TTTTGTGATTTGGCACTATAAACACATTCTCTTAACATTAGGTTAAAGGATAATGATGATTTTCT
390 TTTTGTGATTAGGCACTATAAACACA-T-TCTTCACATTAGGTTAAAGGATAATGATGATTTTCT
* * * * *
171047 TTTGCATGGAAATCTTTTCTTTACC-TA-CTA---TAAAGTCAAAGTTCATCCCTCAAATAAGAC
453 TTTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * *
171107 AAGCATTGATTCTCATAACAGTTCCCGTTTTTTTTCAAGATTGGGAACCAAAAACACGTTCCTTT
518 AAGCATCGATTCTCATAACAGTTCCC-ATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTTT
* * * * ** * * *
171172 CATTAGAATACCAGACAATGATGCTTTGGTGATGCAAAAAAAGATTTTCTTTTCGCTGCTTTTGA
582 TATTAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGA
* * * * * *
171237 TAAAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAAAATAGTCATACTAAACCATATTATTTTT
647 TAGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTT
* *
171302 AGGATTTGGCACCATAAACGTAATCTTCGCATAAGGATGCACGATATTGATGCTTTGGTTTTGAA
712 AGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAA
* *
171367 AGAAAAGCTTTCTTCCCCCAAAGTTTTGTAATGTCTGACTTCGTGCCTCAAATGAGACAAACATT
777 AGAAAAGCTTTCTTCCCCCAAA-TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATG
* * *
171432 GATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAGTCTCCACTTTAGGA
841 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGA
* * *
171497 CAAGGGATAAGGATGATTTTTTTTTTGCATGGAAATCTTTTTTTTGC
906 TAAAGGATAAGGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGC
* *
171544 CTTATTTACCTT-AAATCAAAGTTCAACCATTAAATAAGACAAGTATCGATTCTCGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
*
171608 CCATTCTTTTCAAGAATGGGAACCCAAAAATACATTCCCTTCATTAGGATACATGACATTGATGC
66 CCATTCTTTTCAAGAATGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
*** * * *
171673 TTTGGTGATGCAAAAATCCCTTTTCTTGCTACCATTTTTGATAAAAAT-AGAGTTTGTCTCTTAA
130 TTTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGAT-AAAATCAAAGTTTGTCTCTTAA
* *
171737 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCTGGATTAGGCACCATAAACGTGG
194 ATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAG
* *
171802 TCTTCTCATAAGGATGCACGATATTTATGCTTTGGCTTTTAAAGAAAGGCTTTCTTCCCCCCAAT
259 TCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAAT
* * *
171867 TTTTGA-AAAGTCTGACTTTGTGGCTCAAAAGAGACAAACATGGATTCTAGTAATGACCTTCACT
324 TTTT-ATAAAGTCTGACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
*
171931 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGTTGATTTTCT
388 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCT
* * *
171996 TTTGCAAAGAAATATTTTCTTTGCCTTATTTACCTTAACATCAAAGTTCATCCCTTAAATAAGAC
453 TTTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* *
172061 AAGCATCGATTCTCATAACAGTTCCCATTTTTTTCAAGATTGGGAACTAAAAACACATTCCCTTT
518 AAGCATCGATTCTCATAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTTTT
* * ** * * ** * * *
172126 AATAGGATGCCTGACAATGATACTTTGGTGACGCAAAAAAAAAGCTTTTCCAACCATCATTTTTA
583 ATTAGGATACAAGACAATGATGCTTTGGTGATGC--AAAAAAAGCTTTTCTTACCACCGTTTTTG
* *
172191 ATAGAATCAAAGTTTATCTCTTCAATAAGAGAAGCTAGAATAGTCATACCAAACCTTGTTCTTTT
646 ATAGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTT
* * * * *
172256 CAAGATTTGGCAACATAAAAGTAGTCTTCTCATAAGGTTGCACGATATTGATGCTTTGGTTTTGA
711 TAGGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGA
* * * ** *
172321 AAGGAATGCTTTCTTCCCCCCAATTTTGATACGGTCTGACTTCGTGCCTTAAATGAGACAAACAT
776 AAGAAAAGCTTTCTTCCCCCAAATTTTG-TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT
* *
172386 CGG-TTCTAGTAATGATCTTCATTTATTTTGTGATTAAGCACTATAAACACATTCTCCACATTAG
840 -GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAG
* * **
172450 GATACAGGATAAGGAT-AATTTTTTTTAAATGGAAATCTTTTCTTTGC
904 GATAAAGGATAAGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
* * * *
172497 CTTATTTACCTTAAATTCAAAGTTTAACCCTTAAATGAGACAAGCATCGATTCACGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
*
172562 CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
66 CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * *
172627 TTGGTGACGTAGAAAAAGCTTTTCTTGCCACCGTTTTTTATAAAATCATAGTTTGCCTTTTAAAT
131 TTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
* * *
172692 AAAAGAAGCTAGAATAGTCATACTAAACCTTGCTCTTTTCAGGATTAGGCACCATTAACGTAGTC
196 AAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTC
172757 TTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTT
261 TTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTT
* * * * *
172822 TTATCAAGTCTGACTTCGTGGCTTAAATGAGACAAACATTGATTCTAGTAATGACATTCATTCTT
326 TTATAAAGTCTGACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
*
172887 TTTGTGTTTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGG-TAATGATGATTTTCTTTT
391 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTT
* * * * *
172951 GCGTGGAAATCCTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAA
456 GCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * *
173016 CATCGATTTTCGTAACAGTTCCCATTTTTTTTCAAGATTAGGAACCAAAAACACGTTCCTTTTAT
521 CATCGATTCTCATAACAGTTCCCA-TTTTTTTCAAGATTGGGAACCAAAAACACATTCCTTTTAT
* * * *
173081 TAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCGTTTCTTATCGCCGTTTTTGATAA
585 TAGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAG
* *
173146 AATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTATTCTTTTTAGG
650 AATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTTAGG
173211 ATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGA
715 ATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGA
173276 AAAGCTTTCTTCCCCCAAAATTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGAT
780 AAAGCTTTCTTCCCCC-AAATTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGAT
* * * *
173341 TCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAGTCTCCACTTTAGGACAA
844 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAA
173406 AGGATAAGGATGATTTTTTTTTTTTGCATGGAAATCTTTTCTTTGC
909 AGGATAAGGATGA---TTTTTTTTTGCATGGAAATCTTTTCTTTGC
* * *
173452 CTTATTTACCTTAAAATCAAAGTTCAACCATTAAATAAGACAAGTATTGATTCTCGTAACAGTCT
1 CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
*
173517 CCATTCTTTTCAAGAATGGGAACCAAAAATACATTCCCTTCATTAGGATACATGACATTGATGCT
66 CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* *
173582 TTGGTGATGCAAAAAAACCTTTTCTTGCCACCCTTTTTGATAAAAAT-AAAGTTTGTCTCTTAAA
131 TTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGAT-AAAATCAAAGTTTGTCTCTTAAA
*
173646 TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCTGGATTAGGCACCATAAACGTAGT
195 TAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGT
* * *
173711 CTTCTCATAAGGATGAACGATATTTATGCTTTGG-CTTTAAAGAAAGGCTTTCTTCCCCCCAATT
260 CTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATT
* * *
173775 TTTGA-AAAGTCTGACTTTGTGGCTCAAAAGAGACAAACATGGATTCTAGTAATGACCTTCACTC
325 TTT-ATAAAGTCTGACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
* *
173839 ATTTTGTGATTAGGCACTACAAACACATTCTTCACATTAGGTTAAAGGATAATGTTGATTTTCTT
389 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTT
* * *
173904 TTGCAAAGAAATATTTTCTTTGCCTTATTTACCTTAACATCAAAGTTCATCCCTTAAATAAGACA
454 TTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* *
173969 AGCATCGATTCTCATAACAGTTCCCATTTTTTTCAAGATTGGGAACTAAAAACACATTCCCTTTA
519 AGCATCGATTCTCATAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTTTTA
* * * * ** * * *
174034 ATAGGATGCATGACAATGATACTTTGGTGATGCAAAAAAAAGCTTTTCCAACCATCATTTTTAAT
584 TTAGGATACAAGACAATGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * *
174099 AGAATCAAAGTTTATCTCTTCAATAAGTGAAGCTAGAATAGTCATACCAAACCTTGTTCTTTTTA
648 AGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTTA
* * *
174164 GGATTTGGCAACATAAAAGTAGTCTTCTCATAAGGTTGCACGATATTGATGCTTTGGTTTTGAAA
713 GGATTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAA
* * * * * *
174229 GGAATGCTTTCTTCCCCCCAATTTTGATACAGTCTGACTTTGTGCCTTAAATGAGACAAACATCG
778 GAAAAGCTTTCTTCCCCCAAATTTTG-TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACAT-G
* *
174294 G-TTCTAGTAATGATCTTCATTCATTTTGTGA-TAAGCACTATAAACATATTCTCCACATTAGGA
841 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGA
* *
174357 TACAA-GATAAGGAT-AATTTTTTTTACATGGAAATCTTTTCTTTGC
906 TA-AAGGATAAGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
*
174402 CTTATTTACCTTAAATTCAAAGT
1 CTTATTTACCTTAAAATCAAAGT
174425 GATGAAAACC
Statistics
Matches: 3402, Mismatches: 385, Indels: 91
0.88 0.10 0.02
Matches are distributed among these distances:
948 55 0.02
949 447 0.13
950 97 0.03
951 555 0.16
952 265 0.08
953 715 0.21
954 369 0.11
955 889 0.26
956 10 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (951 bp):
CTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGATGCAAAAAAAGCTTTTCTTGCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
AAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTC
TTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCCCCCAATTT
TTATAAAGTCTGACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTT
GCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
CATCGATTCTCATAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTTTTATT
AGGATACAAGACAATGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGA
ATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTTAGGA
TTTGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAA
AAGCTTTCTTCCCCCAAATTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTC
TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAG
GATAAGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
Found at i:176084 original size:42 final size:42
Alignment explanation
Indices: 176023--176154 Score: 178
Period size: 42 Copynumber: 3.1 Consensus size: 42
176013 TAGCCCTCAA
*
176023 AGAGA-AATAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAAT-AGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * *
176065 AGAGATAGTAGAGATAGGAGGGATGATAAGAGGAGAGACAAG
1 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* *
176107 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGGAGAGAAG
1 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGA-GAGACAAG
176150 A-AGAT
1 AGAGAT
176155 GGAAGAGTGA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 69 0.87
43 10 0.13
ACGTcount: A:0.45, C:0.02, G:0.43, T:0.09
Consensus pattern (42 bp):
AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:183094 original size:476 final size:476
Alignment explanation
Indices: 181205--185774 Score: 5910
Period size: 476 Copynumber: 9.6 Consensus size: 476
181195 CACATTCCCT
* * * *** * * *
181205 TCATTAGGATACATGATATTGATGCTTTGGTGACG-CAGAAATGCTCTCTTCCCCCCAAATTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* * *
181269 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTTGTAATGATCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
* * * * *
181334 GTGATTAGGCACTATAAACACATTC-TCTATATTAGGATAAAGGATAAGGATAATTTTCTGTTGC
131 GTGATTAGGCACTATAAACACATTCTTC-ACATTAGGTTAAAGGATAATGATGATTTTCTTTTGC
* * *
181398 ------A--TTTTCTTTGCCTTATTTACTTTAAAATCAATGTTCAACCCTTAAATAAGACAAGCA
195 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * * * *
181455 TCGATTCTCATAACAATCTCCC-TTCTTTTCAAGAATGGGAACAAAAAACACATTCCCTTCATTA
260 TCGATTCTCGTAACAGT-TCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * * * * *
181519 GGATACACGACATTGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTTTTGATAGAA
324 GGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAA
* * * * * * *
181584 TCAAAGTTTGACCCCTAAATAAGAGAAGCAAGACTAGTCTTTCTAAACCTTGTTCTTTTCAAGAT
389 TCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAAGAT
* * *
181649 TAGCCACTATAAACGTAGTCTTC
454 TTGGCACCATAAACGTAGTCTTC
* * * * * * *
181672 TCATAAGGATGCACGATATTGACGCTTTAGTTTTTAAAGAAAGGCTTTTTTCTCCCAAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* * * * * * *
181737 AAAAGTCTTACTTCATGCCTTAAATAAGACAAAGATGGATTCTAGTAATGATCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
* *
181802 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGACAATGGTGATTTTCTTTTGCA
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCA
*
181867 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
196 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * *
181932 CGATTCTCGTAACAGTTTCCATTTTTCTTTCAAGATTGGGAACCACAAACACATTCCCTTCATCA
261 CGATTCTCGTAACAGTTCCCA-TTTT-TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * * * *
181997 GGATAAATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTGCCGCCGTTTTGGATGGAA
324 GGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAA
* * *
182062 TCAAAGTTTGTCTCTTAAATAAGAAAAGCTAAAATAGTCATACTAAACCTTGTTCTTTTCAGGAT
389 TCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAAGAT
*
182127 TTGGCAGCATAAACGTAGTCTTC
454 TTGGCACCATAAACGTAGTCTTC
* * * *
182150 TCATAATGTTGCACAATATTGATGCTTTGGTTTTGAAAGGAATGCTTTCTTCCCCCCAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* * *
182215 TAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
* * * * * *
182280 GTGATTAGGCACTATAAACAAATTCTCCACATTAGGATACAA-GATAAGGATAATTTTTTTTTTG
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTA-AAGGATAATGATGA-TTTTCTTTTG
*
182344 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGC
194 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * ** * *
182409 ATCAATTCTCATAACAG-TCTCCATTCTTTTCAAGAATGGGAAGTAAAAACGCATTCCCTTTATT
259 ATCGATTCTCGTAACAGTTC-CCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT
* * * * * *
182473 AGGATACATGACATTGATGCTTTGGTGACGCAGAAAAAGCTTTTCTTGCCACCATTTTTTACAGA
323 AGGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGA
* * *
182538 ATCTAAGTTTGTCTCTTAAATAAGAGAAGCTAGATTAGTCATACTAAACCTTGTTCTTTTCAGGA
388 ATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAAGA
* * *
182603 TTAGGCACTATAAACGTAGTTTTC
453 TTTGGCACCATAAACGTAGTCTTC
* * * * * *
182627 TCATGAGGATGCACGATATTCATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCCTCCTAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* * * *
182692 AAAAGTCTGACTTCGTGCCTCAAATGAGACAAAGATTGATTCTAGTAATGACCTTCATTTATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
* *
182757 GTGATTAGGCACTATAAACACATTCCTCACATTAGGTTAAAGGATAATGGTGATTTTCTTTTGCA
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCA
*
182822 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AATAAGACAAGCAT
196 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * *
182886 CTATTCTCGTAACAGTTCCCACTTTTTTTCAAGATTGGGAACCAAAAACAGATTTCCTTCATTAG
261 CGATTCTCGTAACAGTTCCCA-TTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * ** * *
182951 GATACATGACAATGATGCTTTGGGGATGCAAAAAAAGCTTTTCTTACTGCTGTTTTCGATAGAAT
325 GATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAAT
* * *
183016 CAAAGTCTATCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAGGATT
390 CAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAAGATT
183081 TGGCACCATAAACGTAGTCTTC
455 TGGCACCATAAACGTAGTCTTC
* * * *
183103 TCATAAGGACGCATGATATTGATGCTTTGCTTTTGAAAGAAATGCTCTCTTCCCCCCAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
183168 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
*
183233 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTTCTTTTTC
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGA-TTTTCTTTTGC
* * * * *
183298 ATGGAAATCTTTTCTTTGCCTTACTTACCTTAAAATCAAAGTTCCTCCTTTAAATAGGATAAGCA
195 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
** *
183363 TCGATTCTCGTAACAGTTTTCATTTTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAG
260 TCGATTCTCGTAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * *
183428 GATACATGACAATGATGCTTTGGTGAGGCAAAAAAACCTTTTCTTACCGCCGTTTTTGATAGAAT
325 GATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAAT
* * *
183493 TAAAGTTTGTCTCCTAAATAAGAGAAGCTAGAATAGTCATGCTAAACCTTGTTC-TTTCAAGATT
390 CAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAAGATT
* *
183557 TGGCACCATAAATGTACTCTTC
455 TGGCACCATAAACGTAGTCTTC
* * * * * *
183579 CCATAAGGATGCATGATATTGATGTTTTGGTTTTGAAAGAAATGCTTTTTTCCCCCTATTTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
*
183644 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAACCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
* *
183709 GTGATTAGGCAATATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTTCTTTTTC
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGA-TTTTCTTTTGC
* * ** * *
183774 ATGGAAATCTTTTCTTTGCCTTACTTACCTTAAAATCAAAGTTCCTCTTTTAAATAGGATAAGCA
195 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
** *
183839 TCGATTCTCGTAACAGTTTTCATTTTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAG
260 TCGATTCTCGTAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * * * *
183904 GATATATGACAATGATGCTTTGGTGATGCAAAAAAACCTTTACTTACCGCCGTTTTTGATAGAAT
325 GATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAAT
* * *
183969 TAAAGTTTGTCTCCTAAATAAGAGAAGCTAGAATAGTCATGCTAAACCTTGTT-TATTTCAAGAT
390 CAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCT-TTTCAAGAT
* *
184033 TTGGCACCATAAATGTACTCTTC
454 TTGGCACCATAAACGTAGTCTTC
* * * *
184056 CCATAAGGATGCATGATATTGATGTTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCTAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* * * *
184121 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTTGTCATGATCTTCATT-ATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
* * * *
184185 GTGATTAGGCACTCTAAACACATTCTTTAGATTAGGTTAAAGGATAATGATGATTTTCTTTTTCA
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCA
* * *
184250 TGGAAATCTTTTCTTTGCC----TTACCTTAAAATCAAAGTTCCTCCTTTAAATAAGATAAGCAT
196 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
*
184311 CGATTCTCATAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
261 CGATTCTCGTAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* *
184376 ATGCATGACAATGATGCTTTGGTGATGCAAAAAGAA-CTTTTCTTACCACCGTTTTTGATAGAAT
326 ATACATGACAATGATGCTTTGGTGACGCAAAAA-AAGCTTTTCTTACCACCGTTTTTGATAGAAT
* * * * * * * *
184440 C-AAGTTTATCTATTAAATAAGACAAAC-ATGAGTAGTCATACTAATCCCTGTTTTTTTCAAGAT
390 CAAAGTTTGTCTCTTAAATAAGAGAAGCTA-GAATAGTCATACTAAACCTTGTTCTTTTCAAGAT
*
184503 TTGGCACCATAAACATAGTCTTC
454 TTGGCACCATAAACGTAGTCTTC
* * * * ** *
184526 CCCTAAAGG-TACACGATATTGACGCTTTGGTTTTCCAAGAAAAT-CTTT-TTCCCACCAATTTT
1 TCAT-AAGGATGCACGATATTGATGCTTTGGTTTTGAAAG-AAATGCTTTCTTCCCCCCAATTTT
* * * ** *
184588 TGTAAAATCTAACTTCGTGCCTCAATTGAGACAAACATGGATTCTAAAAATGACCTTCATTTATT
64 TGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATT
* * *
184653 TTGTGATTAGGCACTATAAACACATTCTTCACATTTTGATT-AAGGATAATGACGATTTT-TTTT
129 TTGTGATTAGGCACTATAAACACATTCTTCACA-TTAGGTTAAAGGATAATGATGATTTTCTTTT
* *
184716 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAATATGAAAGTTCATCCCTTAAATAAGACAAG
193 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * * * *
184781 CTTCGATTATCGTAACTG-TCTCCATTCTTTTGAAGATTGGGAACCAAAAACACATACCCTTCAT
258 CATCGATTCTCGTAACAGTTC-CCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAT
* * * ** *
184845 TAGGATACTTGAC-ATTATTGCTTTGTTGACGCAAAAAAAGCTTTTCTTACCACTATTTTTTATA
322 TAGGATACATGACAATGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* * * * * *
184909 GAATCAAAGTTTATCTCTTAAATAAGAAAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAA
386 GAATCAAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAA
* *
184974 GATTAGGCAGCATAAACGTAGTCTTC
451 GATTTGGCACCATAAACGTAGTCTTC
* ** * *
185000 TCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAGGGCTTTCTTCCCTCCAATTTTCG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* * * * *
185065 TAAAGTCGGACTTTGTGCCTCAAATAAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
* * * * *
185130 GTGATAAGGCACTATAAACACATTCTCCACATTAGGATCAAGGATAAGGATGATTTTCTTTTGCA
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCA
* * * **
185195 TGAAAATCTTTTCTTTGCCTTATTTATCTTAAAATCAAAGTTCATCCCTTAAATGAGGTAAGCAT
196 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * *
185260 TGATTCTCATAACAG-TCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAG
261 CGATTCTCGTAACAGTTC-CCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * * ** * * *
185324 GATACAAGACACTGATGCTTTGGTGACACAAAAAAAGAATTTCTTACCACCATTTTTGAAAGGAT
325 GATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAAT
* * * ** * *
185389 CAAAGTTTGTCTC-TAAATAAGACAAACATCAGGA-CCT-ATACTAATCCCTT-TTCTTTTTAAG
390 CAAAGTTTGTCTCTTAAATAAGAGAAGC-T-AGAATAGTCATACTAA-ACCTTGTTCTTTTCAAG
*
185450 ATTTGGCACTATAAACAG-AGTCTTC
452 ATTTGGCACCATAAAC-GTAGTCTTC
* * * * * * *
185475 TCATAAGGATACACTG-TATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTT
1 TCATAAGGATGCAC-GATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTT
* * * *
185539 GTAATGTCTGACTTCGTGTCTCGAATGAGACAAA-ATGGATT-TGAGTAAAGACCTTCATTCATT
65 GTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGACCTTCATTCATT
* * *
185602 TTGTGGTTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATTATTTTCTTTTG
129 TTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTG
* *
185667 CATGAAAATCTTTTCTTTCCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
194 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
185732 ATCGATTCTCGTAACATTTCCCATTCTTTTT-AAGATTAGGAAC
259 ATCGATTCTCGTAACAGTTCCCATT-TTTTTCAAGATTGGGAAC
185775 TGATGACAAC
Statistics
Matches: 3634, Mismatches: 416, Indels: 99
0.88 0.10 0.02
Matches are distributed among these distances:
467 26 0.01
468 133 0.04
469 92 0.03
470 150 0.04
471 172 0.05
472 9 0.00
473 149 0.04
474 285 0.08
475 317 0.09
476 1167 0.32
477 689 0.19
478 353 0.10
479 92 0.03
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTCTTTTGCA
TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
CGATTCTCGTAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
ATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATC
AAAGTTTGTCTCTTAAATAAGAGAAGCTAGAATAGTCATACTAAACCTTGTTCTTTTCAAGATTT
GGCACCATAAACGTAGTCTTC
Found at i:183394 original size:953 final size:949
Alignment explanation
Indices: 181205--185774 Score: 6091
Period size: 953 Copynumber: 4.8 Consensus size: 949
181195 CACATTCCCT
* * * *** * * *
181205 TCATTAGGATACATGATATTGATGCTTTGGTGACG-CAGAAATGCTCTCTTCCCCCCAAATTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
*
181269 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTTGTAATGATCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
* * *
181334 GTGATTAGGCACTATAAACACATTC-TCTATATTAGGATAAAGGATAAGGATAATTTTC--TGT-
131 GTGATTAGGCACTATAAACACATTCTTC-ACATTAGGATAAAGGATAAGGATGATTTTCTTTTTC
* * * * *
181395 -T-G-CA--TTTTCTTTGCCTTATTTACTTTAAAATCAATGTTCAACCCTTAAATAAGACAAGCA
195 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCA
* * *
181455 TCGATTCTCATAACAATCTCCCTTCTTTTCAAGAATGGGAACAAAAAACACATTCCCTTCATTAG
260 TCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAG
* * * * *
181520 GATACACGACATTGATGCTTTGGTGATGCAGAAAAAGCTTTTCTTGCCACCATTTTTGATAGAAT
325 GATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAAT
* * * * *
181585 CAAAGTTTGACCCCTAAATAAGAGAAGCAAGACTAGTCTTTCTAAACCTTGTTCTTTTCAAGATT
390 CAAAGTTTGTCTCCTAAATAAGAGAAGC-AGATTAGTCATACTAAACCTTGTTCTTTTCAAGATT
* * * * *
181650 AGCCACTATAAACGTAGTCTTCTCATAAGGATGCACGATATTGACGCTTTAGTTTTTAAAGAAAG
454 TGGCACTATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * * * *
181715 GCTTTTTTCTCCCAAATTTTTGAAAAGTCTTACTTCATGCCTTAAATAAGACAAAGATGGATTCT
519 GC-TTTTTC-CCCCAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCT
*
181780 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGG
582 AGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGG
* *
181845 ACAATGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTC
647 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTC
* *
181910 ATCCCTTAAATAAGACAAACATCGATTCTCGTAACAGTTTCCATTTTTCTTTCAAGATTGGGAAC
712 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCA-TTTT-TTTCAAGATTGGGAAC
* * *
181975 CACAAACACATTCCCTTCATCAGGATAAATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTT
775 CAAAAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTT
* * * * *
182040 CTTGCCGCCGTTTTGGATGGAATCAAAGTTTGTCTCTTAAATAAGAAAAGCTAAAATAGTCATAC
840 CTTACCGCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAGCTAGAATAGTCATAC
* *
182105 TAAACCTTGTTCTTTTCAGGATTTGGCAGCATAAACGTAGTCTTC
905 TAAACCTTGTTCTTTTCAAGATTTGGCACCATAAACGTAGTCTTC
* * * *
182150 TCATAATGTTGCACAATATTGATGCTTTGGTTTTGAAAGGAATGCTTTCTTCCCCCCAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
*
182215 TAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
* * * *
182280 GTGATTAGGCACTATAAACAAATTCTCCACATTAGGATACAA-GATAAGGATAATTTTTTTTTTG
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGATA-AAGGATAAGGATGATTTTCTTTTT-
* *
182344 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGC
194 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGC
* ** * *
182409 ATCAATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAAGTAAAAACGCATTCCCTTTATTA
259 ATCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTA
* * * * *
182474 GGATACATGACATTGATGCTTTGGTGACGCAGAAAAAGCTTTTCTTGCCACCATTTTTTACAGAA
324 GGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAA
* * *
182539 TCTAAGTTTGTCTCTTAAATAAGAGAAGCTAGATTAGTCATACTAAACCTTGTTCTTTTCAGGAT
389 TCAAAGTTTGTCTCCTAAATAAGAGAAGC-AGATTAGTCATACTAAACCTTGTTCTTTTCAAGAT
* * * * *
182604 TAGGCACTATAAACGTAGTTTTCTCATGAGGATGCACGATATTCATGCTTTGGTTTTTAAAGAAA
453 TTGGCACTATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAA
* * *
182669 GGCTTTCTTCCTCCTAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGAGACAAAGATTGATTC
518 GGCTTT-TTCC-CCCAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTC
* *
182734 TAGTAATGACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCCTCACATTAGGTTAAAG
581 TAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAG
*
182799 GATAATGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
646 GATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* *
182864 TATCCCTT-AATAAGACAAGCATCTATTCTCGTAACAGTTCCCACTTTTTTTCAAGATTGGGAAC
711 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCA-TTTTTTTCAAGATTGGGAAC
* * * *
182928 CAAAAACAGATTTCCTTCATTAGGATACATGACAATGATGCTTTGGGGATGCAAAAAAAGCTTTT
775 CAAAAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTT
* * * * *
182993 CTTACTGCTGTTTTCGATAGAATCAAAGTCTATCTCTTAAATAAGAGAAGCTAGAATAGTCATAC
840 CTTACCGCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAGCTAGAATAGTCATAC
*
183058 TAAACCTTGTTCTTTTCAGGATTTGGCACCATAAACGTAGTCTTC
905 TAAACCTTGTTCTTTTCAAGATTTGGCACCATAAACGTAGTCTTC
* * * *
183103 TCATAAGGACGCATGATATTGATGCTTTGCTTTTGAAAGAAATGCTCTCTTCCCCCCAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* *
183168 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
* *
183233 GTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAATGATGATTTTTCTTTTTC
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGATGA-TTTTCTTTTTC
* * * *
183298 ATGGAAATCTTTTCTTTGCCTTACTTACCTTAAAATCAAAGTTCCTCCTTTAAATAGGATAAGCA
195 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCA
* * * * * *
183363 TCGATTCTCGTAACAGTTTTCATTTTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAG
260 TCGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAG
* * * *
183428 GATACATGACAATGATGCTTTGGTGAGGCAAAAAAACCTTTTCTTACCGCCGTTTTTGATAGAAT
325 GATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAAT
* * *
183493 TAAAGTTTGTCTCCTAAATAAGAGAAGCTAGAATAGTCATGCTAAACCTTGTTC-TTTCAAGATT
390 CAAAGTTTGTCTCCTAAATAAGAGAAGC-AGATTAGTCATACTAAACCTTGTTCTTTTCAAGATT
* * * * * * *
183557 TGGCACCATAAATGTACTCTTCCCATAAGGATGCATGATATTGATGTTTTGGTTTTGAAAGAAAT
454 TGGCACTATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAAG
* *
183622 GCTTTTTTCCCCCTATTTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCT
519 GC-TTTTTCCCCC-AATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCT
* *
183687 AGTAATAACCTTCATTCATTTTGTGATTAGGCAATATAAACACATTCTTCACATTAGGTTAAAGG
582 AGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGG
* *
183752 ATAATGATGATTTTTCTTTTTCATGGAAATCTTTTCTTTGCCTTACTTACCTTAAAATCAAAGTT
647 ATAATGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* ** * * **
183817 CCTCTTTTAAATAGGATAAGCATCGATTCTCGTAACAGTTTTCATTTTTTTCAAGATTGGGAACC
711 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTCAAGATTGGGAACC
* * * * *
183882 AAAAACACATTTCCTTCATTAGGATATATGACAATGATGCTTTGGTGATGCAAAAAAACCTTTAC
776 AAAAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTC
* * * * *
183947 TTACCGCCGTTTTTGATAGAATTAAAGTTTGTCTCCTAAATAAGAGAAGCTAGAATAGTCATGCT
841 TTACCGCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAGCTAGAATAGTCATACT
* *
184012 AAACCTTGTT-TATTTCAAGATTTGGCACCATAAATGTACTCTTC
906 AAACCTTGTTCT-TTTCAAGATTTGGCACCATAAACGTAGTCTTC
* * * *
184056 CCATAAGGATGCATGATATTGATGTTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCTAATTTTTG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* *
184121 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTTGTCATGATCTTCATT-ATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
* * * * *
184185 GTGATTAGGCACTCTAAACACATTCTTTAGATTAGGTTAAAGGATAATGATGATTTTCTTTTTCA
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGATGATTTTCTTTTTCA
* *
184250 TGGAAATCTTTTCTTTGCC----TTACCTTAAAATCAAAGTTCCTCCTTTAAATAAGATAAGCAT
196 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCAT
* *
184311 CGATTCTCATAACAGT-TCCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
261 CGATTCTCATAACAGTCT-CCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAG
* * *
184375 GATGCATGACAATGATGCTTTGGTGATGCAAAAAGAA-CTTTTCTTACCACCGTTTTTGATAGAA
325 GATACATGACAATGATGCTTTGGTGACGCAAAAA-AAGCTTTTCTTACCACCATTTTTGATAGAA
* ** * * * * * *
184439 TC-AAGTTTATCTATTAAATAAGACAAACATGAGTAGTCATACTAATCCCTGTTTTTTTCAAGAT
389 TCAAAGTTTGTCTCCTAAATAAGAGAAGCA-GATTAGTCATACTAAACCTTGTTCTTTTCAAGAT
* * * * * * **
184503 TTGGCACCATAAACATAGTCTTCCCCTAAAGG-TACACGATATTGACGCTTTGGTTTTCCAAGAA
453 TTGGCACTATAAACGTAGTCTTCTCAT-AAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAA
** * *
184567 AATCTTTTTCCCACCAATTTTTGTAAAA-TCTAACTTCGTGCCTCAATTGAGACAAACATGGATT
517 AGGCTTTTTCCC-CCAATTTTTG-AAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATT
** * * *
184631 CTAAAAATGACCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTTCACATTTTGATT-A
580 CTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACA-TTAGGTTAA
* * *
184695 AGGATAATGACGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAATATGAAAG
644 AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * * * *
184759 TTCATCCCTTAAATAAGACAAGCTTCGATTATCGTAACTG-TCTCCATTCTTTTGAAGATTGGGA
709 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTC-CCATTTTTTTCAAGATTGGGA
* * * *
184823 ACCAAAAACACATACCCTTCATTAGGATACTTGAC-ATTATTGCTTTGTTGACGCAAAAAAAGCT
773 ACCAAAAACACATTCCCTTCATTAGGATACATGACAATGA-TGCTTTGGTGACGCAAAAAAAGCT
* ** * *
184887 TTTCTTACCACTATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGAAAAACTAGAATAGTCA
837 TTTCTTACCGCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAGCTAGAATAGTCA
* * * * *
184952 TACTAATCCCTATTCTTTTCAAGATTAGGCAGCATAAACGTAGTCTTC
902 TACTAAACCTTGTTCTTTTCAAGATTTGGCACCATAAACGTAGTCTTC
* ** * *
185000 TCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAGGGCTTTCTTCCCTCCAATTTTCG
1 TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
* * *
185065 TAAAGTCGGACTTTGTGCCTCAAATAAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
66 TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
* * * *
185130 GTGATAAGGCACTATAAACACATTCTCCACATTAGGATCAAGGATAAGGATGATTTTCTTTTGCA
131 GTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGATGATTTTCTTTTTCA
* * * *
185195 TGAAAATCTTTTCTTTGCCTTATTTATCTTAAAATCAAAGTTCATCCCTTAAATGAGGTAAGCAT
196 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCAT
*
185260 TGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGG
261 CGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGG
* * * ** * *
185325 ATACAAGACACTGATGCTTTGGTGACACAAAAAAAGAATTTCTTACCACCATTTTTGAAAGGATC
326 ATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATC
* * * * * *
185390 AAAGTTTGTCT-CTAAATAAGACAA--ACATCAGGACCTATACTAATCCCTT-TTCTTTTTAAGA
391 AAAGTTTGTCTCCTAAATAAGAGAAGCAGATTA-G-TC-ATACTAA-ACCTTGTTCTTTTCAAGA
* * *
185451 TTTGGCACTATAAACAG-AGTCTTCTCATAAGGATACACTG-TATTGATGCTTTGGTTTCGCAAG
452 TTTGGCACTATAAAC-GTAGTCTTCTCATAAGGATGCAC-GATATTGATGCTTTGGTTTTGAAAG
* * * * *
185514 AAAGGTTTTTTTCCCACCAATTTTTGTAATGTCTGACTTCGTGTCTCGAATGAGACAAA-ATGGA
515 AAAGG-CTTTTTCCC-CCAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGA
* * *
185578 TT-TGAGTAAAGACCTTCATTCATTTTGTGGTTAGGCACTATAAACACATTCTTCACATTAGGAT
578 TTCT-AGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTT
* * *
185642 AAAGGATAATGATTATTTTCTTTTGCATGAAAATCTTTTCTTTCCCTTATTTACCTTAAAATCAA
642 AAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
* *
185707 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACATTTCCCATTCTTTTT-AAGATTAG
707 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATT-TTTTTCAAGATTGG
185771 GAAC
771 GAAC
185775 TGATGACAAC
Statistics
Matches: 3207, Mismatches: 364, Indels: 103
0.87 0.10 0.03
Matches are distributed among these distances:
943 4 0.00
944 348 0.11
945 111 0.03
946 292 0.09
947 234 0.07
948 20 0.01
949 302 0.09
950 152 0.05
951 40 0.01
952 244 0.08
953 908 0.28
954 79 0.02
955 473 0.15
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (949 bp):
TCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG
TAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
GTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAGGATGATTTTCTTTTTCA
TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCAT
CGATTCTCATAACAGTCTCCATTCTTTTCAAGAATGGGAACCAAAAACACATTCCCTTCATTAGG
ATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATC
AAAGTTTGTCTCCTAAATAAGAGAAGCAGATTAGTCATACTAAACCTTGTTCTTTTCAAGATTTG
GCACTATAAACGTAGTCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTTGAAAGAAAGGC
TTTTTCCCCCAATTTTTGAAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGTTAAAGGATAA
TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
CTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCCATTTTTTTCAAGATTGGGAACCAAAAA
CACATTCCCTTCATTAGGATACATGACAATGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACC
GCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAGCTAGAATAGTCATACTAAACC
TTGTTCTTTTCAAGATTTGGCACCATAAACGTAGTCTTC
Found at i:190829 original size:41 final size:42
Alignment explanation
Indices: 190744--190844 Score: 177
Period size: 41 Copynumber: 2.4 Consensus size: 42
190734 TTCTTCTTTC
* *
190744 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
190786 CTCCTCCTATCATCCCTCCTATCT-TACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
190827 CTCCTCCTATCATCCCTC
1 CTCCTCCTATCATCCCTC
190845 GTCTCTCTTC
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
41 34 0.60
42 23 0.40
ACGTcount: A:0.11, C:0.47, G:0.02, T:0.41
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
Found at i:193376 original size:475 final size:474
Alignment explanation
Indices: 192480--194080 Score: 2048
Period size: 475 Copynumber: 3.4 Consensus size: 474
192470 TCATCAGGAA
* * * *
192480 CCAAAAACATAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTT
1 CCAAAAACACATTTCCTTCATTAGGATACATGACATTAATGCTTTGGTGATGCAAAAAAAGCTTT
* * * * ** * *
192545 TCTTACCACCGTTTTTTATAGAATCAATGTTTACCTCTCAAAAACCAAAAACTAGAATAGTCATA
66 TCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAAAAGACAAACTAGAAGAGTCATA
* * * ** * * *
192610 CTAATCCCTGTTCTTTTCAGGATAAGGCACCATAAATTTAGTCTTCTCATAAGGATATACGATAT
131 CTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTAATAAGGATACACTATAT
* * * *
192675 TGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCCCTAATTTTTGTAAAGTCTGACTCCGTGC
196 TGATGCTTTGG-TTTCACAAGAAA-GCTTTTTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGC
* * * * * * *
192739 CTCAAATGAGACAAACATTGATTCTTGTAATTATCTTCATTCATTTTGGGATTAGACACTATAAA
259 CTTAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTTTGTGATTAGACACTATAAA
* * * * *
192804 CACCTTCTCCTCGTTAGGATAAATGTTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
324 CACATTCTCCAC-TTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * *
192869 CCTATTTACCATAAAATCAAAGTTCATCCCTTAAATATGGCAAGCATCGAGTCTCGTAACGGTCT
388 CCTATTTACCATAAAATCAAAGTTCTTCCCTTAAATATGGCAAGCATCGATTCTCGTAACAGTCT
* *
192934 GCATTCTTTTCTAGATTGGGAG
453 CCATTCTTTTCAAGATTGGGAG
* * * **
192956 CCAAAAACACATTTCCATCATTAGGATACATGACATTAATGCTATGGTGACGCAAAAAACTCTTT
1 CCAAAAACACATTTCCTTCATTAGGATACATGACATTAATGCTTTGGTGATGCAAAAAAAGCTTT
*
193021 TCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC-ATGAAGAGTCAT
66 TCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAAAAGACAAACTA-GAAGAGTCAT
* * * *
193085 ACTAGTCCCAATTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACTATA
130 ACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTAATAAGGATACACTATA
* *
193150 CTGATGCTTTGGTTTCACAAGAAAGATTTTTTCCCACTAATTTTTGTAAAGTCTAACTTCGT-CT
195 TTGATGCTTTGGTTTCACAAGAAAGCTTTTTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGC-
* *
193214 CTTAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTTAGTGATTAGGCACTATAAA
259 CTTAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTTTGTGATTAGACACTATAAA
* * *
193279 CACATTCTCCACATTAGCATAAAGGGTAATGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGC
324 CACATTCTCCAC-TTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * *
193344 CCTATTTACCATAAAATCAAAGTTCTTCCCTTAAAAATGGCAAGCATTGATTCTCATAACAGTCT
388 CCTATTTACCATAAAATCAAAGTTCTTCCCTTAAATATGGCAAGCATCGATTCTCGTAACAGTCT
* * * *
193409 CCTTTCTTTCCAAGATTGAGAA
453 CCATTCTTTTCAAGATTGGGAG
* * *
193431 CCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTT
1 CCAAAAACACATTTCCTTCATTAGGATACATGACATTAATGCTTTGGTGATGCAAAAAAAGCTTT
* * * **
193496 TCTTGCCATCGTTTTTGATAAAATCAAAGTTTATCTCTTAAGTAAGACAAACATA-AAGAGTCAT
66 TCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAAAAGACAAAC-TAGAAGAGTCAT
** **
193560 ACTAATCCCTATTCTTTTCGTGATTAGGCACCATAAACGTAGTCTTCTTTTAAGGATACA-TGAT
130 ACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTAATAAGGATACACT-AT
* * * * *
193624 ATTTATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCGCACCAATTTTTGTAAAGTCTAACATCGTG
194 ATTGATGCTTTGGTTTCACAAG-AAAGCTTTTTTCCCACTAATTTTTGTAAAGTCTAACTTCGTG
* * * *
193689 CCTTAAATGAGACAAACATGGGTTCTAAAAATGACCTTTATTCATTTTGTGATTAGCCACTATAA
258 CCTTAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTTTGTGATTAGACACTATAA
*
193754 ACACATTCTCCACTTAGGATAAAGGATTATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
323 ACACATTCTCCACTTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * *
193819 CTTATTTACCTTAAAATGAAAGTT-TATCCCTTAAATAAGACAAGCATCGATTTTCGTAACTA-T
388 CCTATTTACCATAAAATCAAAGTTCT-TCCCTTAAATATGGCAAGCATCGATTCTCGTAAC-AGT
*
193882 CTCCATTCTTTTCAAGATTGGAAG
451 CTCCATTCTTTTCAAGATTGGGAG
* * * *
193906 CCAAAAACACA-TTCCTTTCATTAGGATACATGACATTATTGCTTTGCTGATGCAGAAAATGCTT
1 CCAAAAACACATTTCC-TTCATTAGGATACATGACATTAATGCTTTGGTGATGCAAAAAAAGCTT
* * * * * * * * * *
193970 TTCTTACCACCATTTTTTATAGAATTAAAATTTGTCTCTTAAATAATAGAAACTAGAATAGTCAC
65 TTCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAAAAGACAAACTAGAAGAGTCAT
* *
194035 ACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTT
130 ACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTT
194081 TTCAATTTTG
Statistics
Matches: 973, Mismatches: 140, Indels: 25
0.86 0.12 0.02
Matches are distributed among these distances:
474 8 0.01
475 673 0.69
476 290 0.30
477 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (474 bp):
CCAAAAACACATTTCCTTCATTAGGATACATGACATTAATGCTTTGGTGATGCAAAAAAAGCTTT
TCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAAAAGACAAACTAGAAGAGTCATA
CTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTAATAAGGATACACTATAT
TGATGCTTTGGTTTCACAAGAAAGCTTTTTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCT
TAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTCATTTTGTGATTAGACACTATAAACA
CATTCTCCACTTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
ATTTACCATAAAATCAAAGTTCTTCCCTTAAATATGGCAAGCATCGATTCTCGTAACAGTCTCCA
TTCTTTTCAAGATTGGGAG
Found at i:194474 original size:419 final size:419
Alignment explanation
Indices: 193667--194499 Score: 1142
Period size: 419 Copynumber: 2.0 Consensus size: 419
193657 TCGCACCAAT
* * *
193667 TTTTGTAAAGTCTAACATCGTGCCTTAAATGAGACAAACATGGGTTCTAAAAATGACCTTTATTC
1 TTTTGTAAAGTCTAACATCGTGCCTCAAATGAGACAAACATGGATTCTAAAAATGACCTTCATTC
* *
193732 ATTTTGTGATTAGCCACTATAAACACATTCTCCACTTAGGATAAAGGATTATGATGATTTTCTTT
66 ATTTTGGGATTAGCCACTATAAACACATTCTCCACGTAGGATAAAGGATTATGATGATTTTCTTT
* * *
193797 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATGAAAGTTTATCCCTTAAATAAGACAA
131 TACATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
193862 GCATCGATTTTCGTAACTATCTCCATTCTTTTCAAGATTGGAAGCCAAAAACACATTCCTTTCAT
196 GCATCGATCTTCATAACTATCTCCATTCTTTTCAAGATTGGAAGCCAAAAACACATTCCTTTCAT
* * * * *
193927 TAGGATACATGACATTATTGCTTTGCTGATGCAGAAAATGCTTTTCTTACCACCATTTTTTATAG
261 TAGGATACATGACATTAATGCTATGCTGACGCAAAAAATGCTTTTCTTACCACCATTTTTGATAG
* * * * ***
193992 AATTAAAATTTGTCTCTTAAATAATAGAAACTAGAATAGTCACACTAATCCTTGTTCTTTTCAAG
326 AATCAAAATTTGTCTCTTAAATAAGACAAACTAGAAGAGTCACACTAATCCAAATTCTTTTCAAG
*
194057 ATTAGGCACCATAAACGTAGTCTTTTCAA
391 ATTAGGCACCATAAACATAGTCTTTTCAA
* * ** *
194086 TTTTGTAAAGTCTGAC-TGCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATT
1 TTTTGTAAAGTCTAACAT-CGTGCCTCAAATGAGACAAACATGGATTCTAAAAATGACCTTCATT
* * * * *
194150 CATTTTGGGATTAGGCACTATAAACACCTTCTCCTCAGTAGGATAAATG-TTATTGATTATTTTC
65 CATTTTGGGATTAGCCACTATAAACACATTCTCCAC-GTAGGATAAAGGATTA-TGATGATTTTC
*
194214 TTTTACATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGG
128 TTTTACATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * *
194279 TAAGCATCGAGTCTT-ATAA-TAGTCTCCATTCTTTTCTAGATTGGGAA-CCAAAAACACGTTCC
193 CAAGCATCGA-TCTTCATAACTA-TCTCCATTCTTTTCAAGATT-GGAAGCCAAAAACACATTCC
* * *
194341 -TTCATTAGGATACATGACATTAATGCTATGGTGACGCAAAAAACT-CTTTTCTTACCATCGTTT
255 TTTCATTAGGATACATGACATTAATGCTATGCTGACGCAAAAAA-TGCTTTTCTTACCACCATTT
* * * *
194404 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATGCAAATTT
319 TTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCACACTAATCCAAATTC
194468 TTTTCAAGATTAGGCACCATAAACATAGTCTT
383 TTTTCAAGATTAGGCACCATAAACATAGTCTT
194500 CTAACAAGGA
Statistics
Matches: 362, Mismatches: 44, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
418 2 0.01
419 226 0.62
420 127 0.35
421 7 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (419 bp):
TTTTGTAAAGTCTAACATCGTGCCTCAAATGAGACAAACATGGATTCTAAAAATGACCTTCATTC
ATTTTGGGATTAGCCACTATAAACACATTCTCCACGTAGGATAAAGGATTATGATGATTTTCTTT
TACATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
GCATCGATCTTCATAACTATCTCCATTCTTTTCAAGATTGGAAGCCAAAAACACATTCCTTTCAT
TAGGATACATGACATTAATGCTATGCTGACGCAAAAAATGCTTTTCTTACCACCATTTTTGATAG
AATCAAAATTTGTCTCTTAAATAAGACAAACTAGAAGAGTCACACTAATCCAAATTCTTTTCAAG
ATTAGGCACCATAAACATAGTCTTTTCAA
Found at i:194935 original size:894 final size:895
Alignment explanation
Indices: 193191--194974 Score: 2514
Period size: 894 Copynumber: 2.0 Consensus size: 895
193181 TCCCACTAAT
* *
193191 TTTTGTAAAGTCTAACTTCGTCTCTTAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTC
1 TTTTGTAAAGTCTAACTGCGTCTCTCAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTC
* *
193256 ATTTAGTGATTAGGCACTATAAACACATTCTCCACATTAGCATAAAGGGTAATGATGATTTTCTT
66 ATTTAGGGATTAGGCACTATAAACACATTCTCCACAGTAGCATAAAGGGTAATGATGATTTTCTT
* * *
193321 TTGCGTGGAAATCTTTTCTTTGCCCTATTTACCATAAAATCAAAGTTCTTCCCTTAAAAATGGCA
131 TTACATGGAAATCTTTTCTTTGCCCTATTTACCATAAAATCAAAGTTCATCCCTTAAAAATGGCA
* * * *
193386 AGCATTGATTCTCATAACAGTCTCCTTTCTTTCCAAGATTGAGAACCAAAAACACATTCCCTTCT
196 AGCATCGAGTCTCATAACAGTCTCCATTCTTTCCAAGATTGAGAACCAAAAACACATTCCCTTCA
* * * *
193451 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTGCCATCGTTTTTGATA
261 TTAGGATACATGACATTAATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCATCGTTTTTGATA
* ** **
193516 AAATCAAAGTTTATCTCTTAAGTAAGACAAACATAAAGAGTCATACTAATCCCTATTCTTTTCGT
326 AAATCAAAGTTTATCTCTTAAATAAGACAAACATAAAGAGTCATACTAATCCAAATTCTTTTCAA
* *** *
193581 GATTAGGCACCATAAACGTAGTCTTCTTTTAAGGATACATGATATTTATGCTTTGGTTTCGCAAG
391 GATTAGGCACCATAAACATAGTCTTCTAACAAGGATACATGATATTTATGCTTTGGTTTCACAAG
* * * * *
193646 AAAAGCTTTTTTCGCACCAATTTTTGTAAAGTCTAACATCGTGCCTTAAATGAGACAAACATGGG
456 AAAAGCTTTTTTCCCACCAATTTTTCTAAAGTCTAACATCGTGCCTCAAATGAGACAAAAATGGA
*
193711 TTCTAAAAATGACCTTTATTCATTTTGTGATTAGCCACTATAAACACATTCTCCACTTAGGATAA
521 TTCTAAAAATGACCTTCATTCATTTTGTGATTAGCCACTATAAACACATTCTCCACTTAGGATAA
* * *
193776 AGGATTATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATGAAAG
586 AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCTTATTTACCTTAAAATCAAAG
* * *
193841 TTTATCCCTTAAATAAGACAAGCATCGATTTTCGTAACTATCTCCATTCTTTTCAAGATTGGAAG
651 TTCATCCCCTAAATAAGACAACCATCGATTTTCGTAACTATCTCCATTCTTTTCAAGATTGGAAG
* * *
193906 CCAAAAACACATTCCTTTCATTAGGATACATGACATTATTGCTTTGCTGATGCAGAAAATGCTTT
716 CCAAAAACACATTCCTTTCATTAGGATACAAGACATTATTGCTTTGCTAATGCAAAAAATGCTTT
* * * * * *
193971 TCTTACCACCATTTTTTATAGAATTAAAATTTGTCTCTTAAATAATAGAAACTAGAATAGTCACA
781 TCTTACCACCACTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACTAGAAGAGTCACA
* * *
194036 CTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTTTCAA
846 CTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCAA
* * * *
194086 TTTTGTAAAGTCTGACTGCGTGC-CTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATT
1 TTTTGTAAAGTCTAACTGCGT-CTCTCAAATGAGACAAACATGGATTCTAGAAATGACCTTCATT
* * * * * * * *
194150 CATTTTGGGATTAGGCACTATAAACACCTTCTCCTCAGTAGGATAAATGTTATTGATTATTTTCT
65 CATTTAGGGATTAGGCACTATAAACACATTCTCCACAGTAGCATAAAGGGTAATGATGATTTTCT
* *
194215 TTTACATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAA-GG
130 TTTACATGGAAATCTTTTCTTTGCCCTATTTACCATAAAATCAAAGTTCATCCCTTAAA-AATGG
* * * * * * *
194279 TAAGCATCGAGTCTTATAATAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACGTT-CCTT
194 CAAGCATCGAGTCTCATAACAGTCTCCATTCTTTCCAAGATTGAGAACCAAAAACACATTCCCTT
**
194343 CATTAGGATACATGACATTAATGCTATGGTGACGCAAAAAACTCTTTTCTTACCATCGTTTTTGA
259 CATTAGGATACATGACATTAATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCATCGTTTTTGA
* * * * *
194408 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATGCAAATTTTTTTC
324 TAAAATCAAAGTTTATCTCTTAAATAAGACAAACATAAAGAGTCATACTAATCCAAATTCTTTTC
194473 AAGATTAGGCACCATAAACATAGTCTTCTAACAAGGATACACT-ATATTGT-TGCTTTGGTTTCA
389 AAGATTAGGCACCATAAACATAGTCTTCTAACAAGGATACA-TGATATT-TATGCTTTGGTTTCA
* * * *
194536 CAAGAAAGGC-TTTTTCCCACCAATTTTTCTAACGTCTGACTTCGTGCCTCAAATGAGACAAAAA
452 CAAGAAAAGCTTTTTTCCCACCAATTTTTCTAAAGTCTAACATCGTGCCTCAAATGAGACAAAAA
** * *
194600 TGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAG
517 TGGATTCTAAAAATGACCTTCATTCATTTTGTGATTAGCCACTATAAACACATTCTCCAC-TTAG
*
194665 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCTTCTTTACCTTAAAAT
581 GATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCTTATTTACCTTAAAAT
194730 CAAAGTTCATCCCCTAAATAAGACAACCATCGATTCTT-GTAA-TAGT-TCCCATTCTTTTCAAG
646 CAAAGTTCATCCCCTAAATAAGACAACCATCGATT-TTCGTAACTA-TCT-CCATTCTTTTCAAG
* *
194792 ATTGGGAA-CCAAAAACACATTCCTTTCTTTAGGATACAAGACATTGA-TGCTTTGGTAATGCAA
708 ATT-GGAAGCCAAAAACACATTCCTTTCATTAGGATACAAGACATT-ATTGCTTTGCTAATGCAA
* ** *
194855 AAAATGCTTTTCTCT-CTACTGCTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGT
771 AAAATGCTTTTCT-TACCACCACTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAAC-T
* * *
194919 -GAAGATTCATACTAATCCCTATTTTTTTCAAGATTAGGCACCATAAACATAGTCTT
834 AGAAGAGTCACACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
194975 CTCATACAGA
Statistics
Matches: 782, Mismatches: 95, Indels: 25
0.87 0.11 0.03
Matches are distributed among these distances:
893 104 0.13
894 447 0.57
895 228 0.29
896 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (895 bp):
TTTTGTAAAGTCTAACTGCGTCTCTCAAATGAGACAAACATGGATTCTAGAAATGACCTTCATTC
ATTTAGGGATTAGGCACTATAAACACATTCTCCACAGTAGCATAAAGGGTAATGATGATTTTCTT
TTACATGGAAATCTTTTCTTTGCCCTATTTACCATAAAATCAAAGTTCATCCCTTAAAAATGGCA
AGCATCGAGTCTCATAACAGTCTCCATTCTTTCCAAGATTGAGAACCAAAAACACATTCCCTTCA
TTAGGATACATGACATTAATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCATCGTTTTTGATA
AAATCAAAGTTTATCTCTTAAATAAGACAAACATAAAGAGTCATACTAATCCAAATTCTTTTCAA
GATTAGGCACCATAAACATAGTCTTCTAACAAGGATACATGATATTTATGCTTTGGTTTCACAAG
AAAAGCTTTTTTCCCACCAATTTTTCTAAAGTCTAACATCGTGCCTCAAATGAGACAAAAATGGA
TTCTAAAAATGACCTTCATTCATTTTGTGATTAGCCACTATAAACACATTCTCCACTTAGGATAA
AGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCTTATTTACCTTAAAATCAAAG
TTCATCCCCTAAATAAGACAACCATCGATTTTCGTAACTATCTCCATTCTTTTCAAGATTGGAAG
CCAAAAACACATTCCTTTCATTAGGATACAAGACATTATTGCTTTGCTAATGCAAAAAATGCTTT
TCTTACCACCACTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACTAGAAGAGTCACA
CTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCAA
Found at i:195634 original size:475 final size:472
Alignment explanation
Indices: 194082--195914 Score: 2312
Period size: 475 Copynumber: 3.9 Consensus size: 472
194072 CGTAGTCTTT
* *
194082 TCAA-TTTTGTAAAGTCTGACTGCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTT
1 TCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * * * * * *
194146 CATTCATTTTGGGATTAGGCACTATAAACACCTTCTCCTCAGTAGGATAAATGTTATTGATTATT
66 CATTCATTTTGGGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATATTGATGATT
* *
194211 TTCTTTTACATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA
131 TTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATA
** * * * *
194276 AGGTAAGCATCGAGTCTTATAATAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACGTT-C
196 AGACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
* ** * *
194340 CTTCATTAGGATACATGACATTAATGCTATGGTGACGCAAAAAACTCTTTTCTTACCATCGTTTT
261 CTTCATTAGGATACATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTATCA-CG-CTT
* **
194405 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATGCAAATTTT
324 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTTT
* * *
194469 TTTCAAGATTAGGCACCATAAACATAGTCTTCTAACAAGGATACACTATATTGTTGCTTTGG-TT
388 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTT
* *
194533 TCACAAGAAAGGCTTTTTCCC
453 TGA-AAGAAAGGATTTTTCCC
* * * * *
194554 ACCAATTTTTCTAACGTCTGACTTCGTGCCTCAAATGAGACAAAAATGGATTCTAGTAATGACCT
1 -TCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* *
194619 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGAT
65 TCATTCATTTTGGGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATATTGATGAT
* *
194684 TTTCTTTTGCATGGAAATCTTTTCCTTGCCTTCTTTACCTTAAAATCAAAGTTCATCCCCTAAAT
130 TTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAAT
*
194749 AAGACAACCATCGATTCTTGTAATAGT-TCCCATTCTTTTCAAGATTGGGAACCAAAAACACATT
195 AAGACAAGCATCGATTCTTGTAATAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATT
* * * * * * * *
194813 CCTTTCTTTAGGATACAAGACATTGATGCTTTGGTAATGCAAAAAATGCTTTTC-TCTCTACTGC
259 CCCTTCATTAGGATACATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTATC-AC-GC
*
194877 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGT-GAAGATTCATACTAATCCCTAT
322 -TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TAGAAGAGTCATACTAATCCCTAT
*
194941 TTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATACA-GATACCCTATATTGATGCTTTG
385 TTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATA-AGGATACACTATATTGATGCTTTG
*
195005 GTTTTGCAAGAAAGGCATTTTTCCC
449 GTTTTGAAAGAAAGG-ATTTTTCCC
* * * * *
195030 ACTAATTTTTGTAAAGTTTGACTTCGTGCCTCAATTGAGACAAATATGGATTCTAGTATTGGA-C
1 TC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GATC
* *
195094 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAGTGATGA
64 TTCATTCATTTTGGGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATATTGATGA
* * * * *
195159 TTTTATTTTGCATGAAAATATTTTCTTTGCCTTATTTGCCTTGAAATCAAAGTTCATCCCCTAAA
129 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAA
* * *
195224 TAAGACAAGCATTGATT-TTCGTAATACTCTCCATTCTTTTCAAGATTGAGAACCAAAAACACAT
194 TAAGACAAGCATCGATTCTT-GTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
* * ** * * *
195288 TCCCTTCATTAGTATAGATGACATTTTTGCTTTGGTGATGCAAAAAAAGCTTTTCTTATCAC-CA
258 TCCCTTCATTAGGATACATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTATCACGCT
* * * * * *
195352 TT-ATAGAAACAACA-TATGTCTCTTAGATAAGAGAAACTAGAACAGTGATACTAATCCCTATTT
323 TTGATAGAATCAA-AGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTA-TT
* ** * * * *
195415 TTTTTCTTAGGATTAGGCACCATAAATGTAGTCTCCTCATAAGGATACACGATACTGATACTTTG
386 TTTTTC--AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTG
*
195480 GTTTTGAAAGAAAGGTTTTCTTTCCC
449 GTTTTGAAAGAAAGG-ATT-TTTCCC
* * * *
195506 TCAATTTTTTTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATTTT
1 TCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * * * *
195571 CATTCATTTTGGGATTAGGCAATATAAACACCTT-TTCCTCATTAGGATAAATGTTATTGATGAT
66 CATTCATTTTGGGATTAGGCACTATAAACACATTCTT-CACATTAGGATAAAGGATATTGATGAT
* * *
195635 TTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT
130 TTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAAT
* * * * * *
195700 AAGGCAAGCATCGATTCTTGTAAAAGTCTCTATTCTTTTCAAGATTGGGAACCAAAATCACTTTT
195 AAGACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTC
* *
195765 CCTTCATTAGGATACATGACATTGATGCTATGGTGACGCAAAAAAAACTTTTCTTA-CTACCGTT
260 CCTTCATTAGGATACATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTATC-A-CG-C
* *
195829 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCGTACTAATCCCTATA
322 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATT
** *
195893 TTTTTCGCGATTGGGCACCATA
386 TTTTTCAAGATTAGGCACCATA
195915 GATGATGAAA
Statistics
Matches: 1176, Mismatches: 151, Indels: 63
0.85 0.11 0.05
Matches are distributed among these distances:
471 1 0.00
472 47 0.04
473 15 0.01
474 235 0.20
475 502 0.43
476 312 0.27
477 6 0.01
478 11 0.01
479 47 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (472 bp):
TCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
CATTCATTTTGGGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATATTGATGATT
TTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCCTAAATA
AGACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
CTTCATTAGGATACATGACATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTATCACGCTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTTTTTT
CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACTATATTGATGCTTTGGTTTTGA
AAGAAAGGATTTTTCCC
Found at i:202030 original size:42 final size:42
Alignment explanation
Indices: 201984--202102 Score: 159
Period size: 42 Copynumber: 2.8 Consensus size: 42
201974 TTCTTCTCTC
* * * *
201984 CTCCTCCTGTCATTCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
*
202026 CTCCTCCTATAATCCCTCC-CATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTC-TCTCTACTATCTCTCCTATCT
* *
202068 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
202103 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.01
42 65 0.97
43 1 0.01
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:204921 original size:42 final size:42
Alignment explanation
Indices: 204866--204984 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
204856 TTCTTCTCTC
* *
204866 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
204908 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
204950 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
204985 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:204925 original size:12 final size:11
Alignment explanation
Indices: 204899--204974 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
204889 TCTATTATCT
*
204899 CTCCTGTCTCTC
1 CTCCTATCTC-C
204911 CTCCTATCATCC
1 CTCCTATC-TCC
204923 CTCCTATCT--
1 CTCCTATCTCC
*
204932 CTACTATCT--
1 CTCCTATCTCC
*
204941 CTCCTGTCTCTC
1 CTCCTATCTC-C
204953 CTCCTATCATCC
1 CTCCTATC-TCC
*
204965 CTCCTCTCTC
1 CTCCTATCTC
204975 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:204926 original size:24 final size:24
Alignment explanation
Indices: 204890--204975 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
204880 CCTCCTCTCT
* *
204890 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
204914 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
204935 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
204956 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
204976 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:204950 original size:18 final size:18
Alignment explanation
Indices: 204881--204951 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
204871 CCTGTCATCC
* *
204881 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
204899 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
204921 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
204941 CTCCTGTCTCT
1 CTCCTGTCTCT
204952 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:207472 original size:476 final size:473
Alignment explanation
Indices: 206574--208099 Score: 2143
Period size: 476 Copynumber: 3.2 Consensus size: 473
206564 GGTTTTCATC
* *
206574 ACCTTCATTCATTTTGTGATTAGGCACTACAAACACGTTCTTCACATTAGGATAAAGGATAATGA
1 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGA
*
206639 TGATTTTCTTTTACATGGAAATCTTTTATTTGCCTTATTTACCTTAAAATCAAAGTTCGTCCATT
66 TGATTTTCTTTTACATGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAGTTCGTCC-TT
* * * * *
206704 AAATAAGACAAGCATCGATTCTCGCAACTATCTCCATTCTTTCCAAGATTGGGAGCCAAAAACAC
130 AAATAAGACAAGCATCGATTCTCG-TACTATCTCCAATCTTTTCAAGATTGGGAACAAAAAACAC
206769 -ATTCCCTTCATTAGGATACATGACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCAC
194 AATT-CCTTCATTAGGATACATGACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCAC
* * * *
206833 CGTTTTTCATAAAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAAAGTCATACTAATCCCT
258 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCATACTAATCCAT
* *
206898 ATTCTTTTC-GTGATTAGGCACCATAGACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
323 ATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTT
** ** *
206962 TGGTTTCACAAGAAATGTTTTTTTCCCACCAATTTTTATAAAGTCTAACTTCAAGCCTCAAATAA
387 TGGTTTCACAAGAAA-GGCTTTTTCCCACCAATTTTTATAAAGTCTAACTTCGTGCCTCAAATGA
* *
207027 GACAAACATGGATTCTGGAAATG
451 GACAAACATGGATTCTAGTAATG
*
207050 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCATATTAGGATAAAGGATAATGA
1 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGA
*
207115 TGATTTTCTTTTACATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCGTCGCTT
66 TGATTTTCTTTTACATGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAGTTCGTC-CTT
* *
207180 AAATAAGACAAGCATCGATTCTTGTAGCTATCTCCAGTCTTTTCAAGATTGGGAACAAAAAACAC
130 AAATAAGACAAGCATCGATTCTCGTA-CTATCTCCAATCTTTTCAAGATTGGGAACAAAAAACAC
*
207245 AATT-CTCTCATTAGGATACATGACATTATTGCTTTAGTGACGCAAAAAAAGCTTTTCTTACCAC
194 AATTCCT-TCATTAGGATACATGACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCAC
* * * * *
207309 CGTTTTTGATAGAATCAAAATTTGTCTCTTAAACAAGAGAAAC-TAGAATAGTCATACTAATCCT
258 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAAAGTCATACTAATCCA
* * * *
207373 TGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCCTT-TGATAAGGATCCACGATATTGATGCT
322 TATTCTTTTCAGGATTAGGCACCATAAACATAGT-CTTCTAATAAGGATACACGATATTGATGCT
* * * *
207437 TTGGATTTGA-AAGAAAGGCTTTCTTCCCCCCAATTTTTATAATGTCTCACTAT-GTGCCTCAAA
386 TTGG-TTTCACAAGAAAGGCTTT-TTCCCACCAATTTTTATAAAGTCTAACT-TCGTGCCTCAAA
** *
207500 TGAGACAAACATTAAATCTAGTAATG
448 TGAGACAAACATGGATTCTAGTAATG
* * * * * * * *
207526 ATCTTCATTCATTTTAG-AATTAGGCACTATAAACACCTTTTTCTCATTAGGATAAATGTTATTG
1 ACCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * * *
207590 ATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTATTAACCTTAAAATCAAAGTTCATCCCG
65 ATGATTTTCTTTTACATGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAGTTCGT-CCT
* * * * *
207655 TAAATAAGGCAAGCATCGAGTCTCGTAATAGTCTCCAATCTTTTCTAGATTAGGAACAAAAAACA
129 TAAATAAGACAAGCATCGATTCTCGTACTA-TCTCCAATCTTTTCAAGATTGGGAACAAAAAACA
* * * * *
207720 CAATTCCTTTATAAGGATACATGACATTAATGCTATGGTGACGCAAAAAATGCTTTTCTTACCAC
193 CAATTCCTTCATTAGGATACATGACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCAC
* * *
207785 CGTTTTTGGTAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCATAATAATCCCA
258 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCATACTAAT-CCA
* * * *
207850 AATT-TTTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACTATATTGATGCTC
322 TATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTT
* *
207914 TGGTTTCACAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAG
387 TGGTTTCACAAGAAAGGCTTTTTCCCACCAATTTTTATAAAGTCTAACTTCGTGCCTCAAATGAG
207979 ACAAACATGGATTCTAGTAATG
452 ACAAACATGGATTCTAGTAATG
*
208001 ACCTTCATTAATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGA
1 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGA
* *
208066 AGATTTTCTTTTGCATGGAAATCTTTTTTTTGCC
66 TGATTTTCTTTTACATGGAAATCTTTTTTTTGCC
208100 GTAAAATCAA
Statistics
Matches: 930, Mismatches: 100, Indels: 41
0.87 0.09 0.04
Matches are distributed among these distances:
474 2 0.00
475 161 0.17
476 745 0.80
477 22 0.02
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (473 bp):
ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGA
TGATTTTCTTTTACATGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAGTTCGTCCTTA
AATAAGACAAGCATCGATTCTCGTACTATCTCCAATCTTTTCAAGATTGGGAACAAAAAACACAA
TTCCTTCATTAGGATACATGACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGT
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCATACTAATCCATATT
CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGT
TTCACAAGAAAGGCTTTTTCCCACCAATTTTTATAAAGTCTAACTTCGTGCCTCAAATGAGACAA
ACATGGATTCTAGTAATG
Found at i:213383 original size:12 final size:11
Alignment explanation
Indices: 213361--213436 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
213351 AGAGAAAGAA
*
213361 GAGAGAGGAGG
1 GAGATAGGAGG
213372 GATGATAGGAGG
1 GA-GATAGGAGG
*
213384 AGAGACAGGA--
1 -GAGATAGGAGG
*
213394 GAGATAGTA--
1 GAGATAGGAGG
213403 GAGATAGGAGG
1 GAGATAGGAGG
213414 GATGATAGGAGG
1 GA-GATAGGAGG
*
213426 AGAGACAGGAG
1 -GAGATAGGAG
213437 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:213393 original size:24 final size:24
Alignment explanation
Indices: 213360--213445 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
213350 AAGAGAAAGA
*
213360 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
213384 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
213402 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
213426 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
213446 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:213412 original size:42 final size:42
Alignment explanation
Indices: 213351--213469 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
213341 TAGCCCTCAA
* *
213351 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
213393 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
213435 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
213470 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:215975 original size:27 final size:30
Alignment explanation
Indices: 215937--215991 Score: 89
Period size: 27 Copynumber: 1.9 Consensus size: 30
215927 TTTTTTTTTC
215937 AAGAATACAAAAA-A-A-AAAAAAAAAAGA
1 AAGAATACAAAAAGAGAGAAAAAAAAAAGA
215964 AAGAATACAAAAAGAGAGAAAAAAAAAA
1 AAGAATACAAAAAGAGAGAAAAAAAAAA
215992 CCAGTATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 13 0.52
28 1 0.04
29 1 0.04
30 10 0.40
ACGTcount: A:0.82, C:0.04, G:0.11, T:0.04
Consensus pattern (30 bp):
AAGAATACAAAAAGAGAGAAAAAAAAAAGA
Found at i:215977 original size:15 final size:15
Alignment explanation
Indices: 215937--215983 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
215927 TTTTTTTTTC
215937 AAGAATACAAAAA-A
1 AAGAATACAAAAAGA
*
215951 AA-AA-AAAAAAAGA
1 AAGAATACAAAAAGA
215964 AAGAATACAAAAAGA
1 AAGAATACAAAAAGA
*
215979 GAGAA
1 AAGAA
215984 AAAAAAAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
12 6 0.22
13 5 0.19
14 4 0.15
15 12 0.44
ACGTcount: A:0.79, C:0.04, G:0.13, T:0.04
Consensus pattern (15 bp):
AAGAATACAAAAAGA
Found at i:215990 original size:15 final size:15
Alignment explanation
Indices: 215952--215991 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
215942 TACAAAAAAA
215952 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
215967 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
215982 AAAAAAAAAA
1 AAAAAAAAAA
215992 CCAGTATTTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:218114 original size:12 final size:11
Alignment explanation
Indices: 218092--218198 Score: 68
Period size: 12 Copynumber: 10.0 Consensus size: 11
218082 AGAGAAAGAA
*
218092 GAGAGAGGAGG
1 GAGATAGGAGG
218103 GATGATAGGAGG
1 GA-GATAGGAGG
*
218115 AGAGACAGGA--
1 -GAGATAGGAGG
*
218125 GAGATAGTA--
1 GAGATAGGAGG
218134 GAGATAGGAGG
1 GAGATAGGAGG
218145 GATGATAGGAGG
1 GA-GATAGGAGG
*
218157 AGAGACAGGA--
1 -GAGATAGGAGG
*
218167 GAGATAGTA--
1 GAGATAGGAGG
218176 GAGATAGGAGG
1 GAGATAGGAGG
218187 GATGATAGGAGG
1 GA-GATAGGAGG
218199 AAAGACAGGA
Statistics
Matches: 78, Mismatches: 9, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
9 30 0.38
11 6 0.08
12 38 0.49
13 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.48, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:218126 original size:9 final size:9
Alignment explanation
Indices: 218112--218185 Score: 64
Period size: 9 Copynumber: 8.6 Consensus size: 9
218102 GGATGATAGG
*
218112 AGGAGAGAC
1 AGGAGAGAT
218121 AGGAGAGAT
1 AGGAGAGAT
*
218130 AGTAGAGAT
1 AGGAGAGAT
*
218139 AGGAGGGAT
1 AGGAGAGAT
* *
218148 --GATAG-G
1 AGGAGAGAT
*
218154 AGGAGAGAC
1 AGGAGAGAT
218163 AGGAGAGAT
1 AGGAGAGAT
*
218172 AGTAGAGAT
1 AGGAGAGAT
218181 AGGAG
1 AGGAG
218186 GGATGATAGG
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 43 0.86
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:218142 original size:18 final size:18
Alignment explanation
Indices: 218115--218230 Score: 63
Period size: 18 Copynumber: 5.8 Consensus size: 18
218105 TGATAGGAGG
218115 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
218133 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
218157 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
218175 AGAGATAGGAGGGATGATAGG
1 AGAGACAGGA--GA-GATAGT
*
218196 AGGAAAGACAGGAGAGATAAT
1 A-G--AGACAGGAGAGATAGT
*
218217 -GAGAGAGGAGAGAT
1 AGAGACAGGAGAGAT
218231 GATAGGAGGA
Statistics
Matches: 76, Mismatches: 10, Indels: 25
0.68 0.09 0.23
Matches are distributed among these distances:
17 12 0.16
18 20 0.26
19 1 0.01
20 4 0.05
21 16 0.21
22 5 0.07
24 18 0.24
ACGTcount: A:0.43, C:0.03, G:0.43, T:0.11
Consensus pattern (18 bp):
AGAGACAGGAGAGATAGT
Found at i:218143 original size:42 final size:42
Alignment explanation
Indices: 218082--218241 Score: 250
Period size: 42 Copynumber: 3.8 Consensus size: 42
218072 TAGCCCTCAA
* *
218082 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
218124 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
218166 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAAAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
218208 AGAGATAAT-GAGAGAGGAGAGATGATAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
218242 GAGAGAAGAA
Statistics
Matches: 110, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 22 0.20
42 88 0.80
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:227673 original size:15 final size:17
Alignment explanation
Indices: 227647--227689 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
227637 TCCATCTTCT
227647 TCTCTCCTC-CTCCTATCA
1 TCTCTCCTCTCT-C-ATCA
*
227665 TCTCTCCTCTCTCATTA
1 TCTCTCCTCTCTCATCA
227682 TCTCTCCT
1 TCTCTCCT
227690 GTCTTTCCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 11 0.48
18 10 0.43
19 2 0.09
ACGTcount: A:0.09, C:0.47, G:0.00, T:0.44
Consensus pattern (17 bp):
TCTCTCCTCTCTCATCA
Found at i:227711 original size:12 final size:11
Alignment explanation
Indices: 227696--227802 Score: 68
Period size: 12 Copynumber: 10.0 Consensus size: 11
227686 TCCTGTCTTT
227696 CCTCCTATCATC
1 CCTCCTATC-TC
227708 CCTCCTATCT-
1 CCTCCTATCTC
*
227718 -CTACTATCT-
1 CCTCCTATCTC
*
227727 -CTCCTGTCTC
1 CCTCCTATCTC
227737 TCCTCCTATCATC
1 -CCTCCTATC-TC
227750 CCTCCTATCT-
1 CCTCCTATCTC
*
227760 -CTACTATCT-
1 CCTCCTATCTC
*
227769 -CTCCTGTCTC
1 CCTCCTATCTC
227779 TCCTCCTATCATC
1 -CCTCCTATC-TC
*
227792 CCTCCTCTCTC
1 CCTCCTATCTC
227803 TTCTTTCTCT
Statistics
Matches: 78, Mismatches: 9, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
9 30 0.38
11 4 0.05
12 40 0.51
13 4 0.05
ACGTcount: A:0.11, C:0.48, G:0.02, T:0.39
Consensus pattern (11 bp):
CCTCCTATCTC
Found at i:227741 original size:42 final size:42
Alignment explanation
Indices: 227653--227812 Score: 250
Period size: 42 Copynumber: 3.8 Consensus size: 42
227643 TTCTTCTCTC
* * *
227653 CTCCTCCTATCATCTCTCCTCTCTC-ATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
*
227694 TTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
227736 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
* * *
227778 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
227813 TTGAGGGCTA
Statistics
Matches: 110, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 22 0.20
42 88 0.80
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
Found at i:227778 original size:9 final size:9
Alignment explanation
Indices: 227709--227782 Score: 64
Period size: 9 Copynumber: 8.6 Consensus size: 9
227699 CCTATCATCC
227709 CTCCTATCT
1 CTCCTATCT
*
227718 CTACTATCT
1 CTCCTATCT
*
227727 CTCCTGTCT
1 CTCCTATCT
*
227736 CTCCT-CCT
1 CTCCTATCT
* *
227744 AT-C-ATCC
1 CTCCTATCT
227751 CTCCTATCT
1 CTCCTATCT
*
227760 CTACTATCT
1 CTCCTATCT
*
227769 CTCCTGTCT
1 CTCCTATCT
227778 CTCCT
1 CTCCT
227783 CCTATCATCC
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 43 0.86
ACGTcount: A:0.11, C:0.45, G:0.03, T:0.42
Consensus pattern (9 bp):
CTCCTATCT
Found at i:230465 original size:475 final size:475
Alignment explanation
Indices: 229424--230639 Score: 1597
Period size: 475 Copynumber: 2.6 Consensus size: 475
229414 GTTTTCATCA
229424 CGTAAT-GCTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
1 CGTAATAG-TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * *
229488 GACACTATTGCTTTGGTAACGCAAAAAAAGCTTTTCTGATCACCGTTTTTGATAGAATCAAAATT
65 GACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAATT
*
229553 TATCTCTTAAATAGGAAAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
130 TATCTCTTAAATAAGAAAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * *
229618 ATAAACGTAGTCTTTTCATAAGGGTAC-ATGATATTGATGCTTTGGTTTTGAAAGAAAAGCTTTC
195 ATAAACGTAGTCTTCTCATAAGGATACAAT-ATATTGATGCTTTGG-TTTCAAAGAAAAGCTTTC
*
229682 TCCCCCTAAATTTTTGTAAAGTCTGACTGCGTGCCTCAAATAAGACAAACATTGATTCTAGTAAT
258 TCCCCC-AAATTTTTGTAAAGTCTGACTGCGTGCCTCAAATAAGACAAACATGGATTCTAGTAAT
* * * *
229747 GACCTTCACTCATTTTGTGATTAGGCATTATAAACACGTTCTTCACATTAGGATAAAGGATAATG
322 GACCTTCACTCATTTTGTGATTAGGCACTATAAACACATGCTCCACATTAGGATAAAGGATAATG
* * * *
229812 ATGACTTTCTTTTGCATGAAAAATCTTTTCTTCGCCTTATTTACCTTAAAATCAAAGTTCACCCC
387 ATGACTTTCTATTACAAGAAAAATCTTTTCTTCACCTTATTTACCTTAAAATCAAAGTTCACCCC
* *
229877 TTAAATACGAGAAGCAACGATTCT
452 TTAAATAAGACAAGCAACGATTCT
* * *
229901 TGTAATAGT-TCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACAA
1 CGTAATAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
** * *** *
229965 GACATTGA-TGCTTTGCCGACGCAAAAAATGCTTTTCTTACCATTATTTTTGATAGAATCAAAGT
65 GACATT-ATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAAT
* * * * * *
230029 TTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCAATT-TATGTCATGATTAGGC
129 TTATCTCTTAAATAAGAAAAACTA-GAATAGTCATACTAATCCCTATTCT-TTTCAGGATTAGGC
* * * * * *
230092 ACCATAAACATAGTCTTCACTTTAGGATACAATATATTGATGCTTTAGTTTCACAAGAAAGGCTT
192 ACCATAAACGTAGTCTTCTCATAAGGATACAATATATTGATGCTTTGGTTTCA-AAGAAAAGCTT
* * * *
230157 TTTCCCACC-AATTTTTGTAAAGTCTGACTTCGTGCCTCCAATGAGACAAACATGGATTCTAGTA
256 TCTCCC-CCAAATTTTTGTAAAGTCTGACTGCGTGCCTCAAATAAGACAAACATGGATTCTAGTA
* *
230221 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATGCTCCGCATTAGGATAAAGGATAA
320 ATGACCTTCACTCATTTTGTGATTAGGCACTATAAACACATGCTCCACATTAGGATAAAGGATAA
* * **
230286 TGATGATTTTCTATTACAAG-AAAATCTTTTCTTTACCTTATTTACCTTAAAATCAAAGTTCGTC
385 TGATGACTTTCTATTACAAGAAAAATCTTTTCTTCACCTTATTTACCTTAAAATCAAAGTTCACC
**
230350 CCTTAAATAAGACAAGCATTGATTCT
450 CCTTAAATAAGACAAGCAACGATTCT
* * * * *
230376 CGTAGCT-GTCTCCGTTCTTTTCAAGATTTGGAACCAGAAACACATTCCCTTCATAAGGATACAT
1 CGTA-ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * *
230440 GACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTGCGACCGCTTTTGACAGAATCAAAATT
65 GACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAATT
* * * * *
230505 TATCTCATAAATAAGAGAAACTAGAATAGTAATAAC-AATCCCTGTTCTTTTCAGGATTAGGTAC
130 TATCTCTTAAATAAGAAAAACTAGAATAGTCAT-ACTAATCCCTATTCTTTTCAGGATTAGGCAC
** * * *
230569 CATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGGAATGCTTTC
194 CATAAACGTAGTCTTCTCATAAGGATACAATATATTGATGCTTTGG-TTTCAAAGAAAAGCTTTC
230634 TCCCCC
258 TCCCCC
230640 CCCCCCATTG
Statistics
Matches: 631, Mismatches: 93, Indels: 33
0.83 0.12 0.04
Matches are distributed among these distances:
474 3 0.00
475 266 0.42
476 143 0.23
477 213 0.34
478 6 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (475 bp):
CGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATG
ACATTATTGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAATTT
ATCTCTTAAATAAGAAAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
TAAACGTAGTCTTCTCATAAGGATACAATATATTGATGCTTTGGTTTCAAAGAAAAGCTTTCTCC
CCCAAATTTTTGTAAAGTCTGACTGCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGACC
TTCACTCATTTTGTGATTAGGCACTATAAACACATGCTCCACATTAGGATAAAGGATAATGATGA
CTTTCTATTACAAGAAAAATCTTTTCTTCACCTTATTTACCTTAAAATCAAAGTTCACCCCTTAA
ATAAGACAAGCAACGATTCT
Found at i:235678 original size:42 final size:42
Alignment explanation
Indices: 235623--235741 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
235613 TTCTTCTCTC
* *
235623 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
235665 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
235707 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
235742 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:235682 original size:12 final size:11
Alignment explanation
Indices: 235656--235731 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
235646 TCTATTATCT
*
235656 CTCCTGTCTCTC
1 CTCCTATCTC-C
235668 CTCCTATCATCC
1 CTCCTATC-TCC
235680 CTCCTATCT--
1 CTCCTATCTCC
*
235689 CTACTATCT--
1 CTCCTATCTCC
*
235698 CTCCTGTCTCTC
1 CTCCTATCTC-C
235710 CTCCTATCATCC
1 CTCCTATC-TCC
*
235722 CTCCTCTCTC
1 CTCCTATCTC
235732 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:235683 original size:24 final size:24
Alignment explanation
Indices: 235647--235732 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
235637 CCTCCTCTCT
* *
235647 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
235671 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
235692 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
235713 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
235733 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:235707 original size:18 final size:18
Alignment explanation
Indices: 235638--235708 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
235628 CCTGTCATCC
* *
235638 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
235656 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
235678 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
235698 CTCCTGTCTCT
1 CTCCTGTCTCT
235709 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:239815 original size:475 final size:474
Alignment explanation
Indices: 238038--242497 Score: 5058
Period size: 475 Copynumber: 9.4 Consensus size: 474
238028 ATATTCTTCG
* * * * * *
238038 TTCTTTTCTAGATTAGGAGCAAAAAACACATTTCCTTCATTAGGATACATGACATTAATGCTATG
1 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
* *
238103 GTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
66 GTGATGCAAAAAAAGCTTTTCTTACCATCG--TTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * *
238168 ACAAACTTGAAGAGTCATACTAAT-CCTAAATT-TTTTCAAGATTAGGCACCATAAACGTAGTTT
129 ACAAACATGAAGAGTCATACTAATCCCT--ATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * *
238231 TCTAATAAGGATACTCTG-TATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACCAATTT
192 TCTCATAAGGATAC-ATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTT
* * *
238294 TTGTAAAGCCTAACTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGACCTTCATTCAT
256 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
*
238359 TTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
321 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* *
238424 GCATGGAAGTCTTTTTTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAA
386 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAA
* *
238489 C-TTCGATTCTTGTAACAATCTCCA
451 CATT-GATTCTCGTAACAGTCTCCA
* * * * * *
238513 TT-TTGTTAAAGATTGGGTACCAAAAACACGTTTCCTTCATTAGGATACATGACATTGATGTTTT
1 TTCTT-TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTT
* * * *
238577 GGTGACGCAAAAAAAGCTTTTCTTCCCACCAT-TTTTGATAGAATAAAAATTTGTCTCTTAAATA
65 GGTGATGCAAAAAAAGCTTTTCTT---ACCATCGTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * ***
238641 AGAGAAACTAT-AATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAATGCAGTC
127 AGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * * *
238705 TTCTCACAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCTCCAATTT
191 TTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTT
** * * * * *
238770 TTGTATTGTCTGACTGCGTGCCTCAAATGAGGCAAACATTGATTCTAGTAATGATCTTCTTTCAT
256 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
* * * * * * * * *
238835 TTTGGGATTAGGCACTATAAACTCCTTCTCCTCATTAGGATAAATGTTATTAATGATTTTCTTTT
321 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * * * *
238900 GCATTGAAATCTTTTCTTTGCCCTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGGCAAG
386 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAA
* * * * *
238965 CATCGAGTCTCGCAATAGTCTTCA
451 CATTGATTCTCGTAACAGTCTCCA
* * * * *
238989 TTCTTTTCTAGATTGGGAACCAAAAACAAATTTCCTTCATTAGGATACATGATATTAATGCTATG
1 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
* * * *
239054 GTTATGCAAAAAATGCTTTT-TTAACCACCGTTTTTGACT-GAATTAAAGTTTGTCTCTTAAATA
66 GTGATGCAAAAAAAGCTTTTCTT-ACCATCG--TTTGA-TAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
239117 AGACAAACATAAAGAGCCTTACTAATCCCATTTTTTTTTTCAAGATTAGGCACCATAAACATAGT
127 AGACAAACATGAAGAGTCATACTAATCCC--TATTCTTTTCAAGATTAGGCACCATAAACATAGT
* *
239182 CTTCTAATAAGGATACACT-ATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACCAAT
190 CTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAAT
* * * * *
239245 TTTTGTAATGTCTCACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTACTTACCGTCATTC
254 TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTC
239310 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
319 ATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC-T
* * * *
239375 TTTGCGTGGAAGTCTTTTTTTTGCC-TATTTACCTTAAAATCAAAGTTCAACCCTTAAATGAGAC
383 TTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGAC
*
239439 AAACATTGATTCTCGTAACAATCTCCA
448 AAACATTGATTCTCGTAACAGTCTCCA
* *
239466 TT-TTGTTCAAGATTGGGTACCAAAAACACGA-TCCCTTCATTAGGATACATGACATTGATGCTT
1 TTCTT-TTCAAGATTGGGAACCAAAAACAC-ATTCCCTTCATTAGGATACATGACATTAATGCTT
*
239529 TGGTGATGCAAAAAAAGCTTTCCTTAACCATCG-TTGATAGAATCAAAGTTTGTCTCTTAAATAA
64 TGGTGATGCAAAAAAAGCTTTTCTT-ACCATCGTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
239593 GACAAACATGAAGAGTCATACTAACCCCTATTCCTTTCAAGATTTGGCACCATAAAACATAGTCT
128 GACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCAT-AAACATAGTCT
* * *
239658 TCTCATAAGGATACATGATATTGGTACTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTT
192 TCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * * * *
239723 TGTAAAGTCTAATTTCGTGCCTCAATTGACACAAATATGGATTCTAGTATTGGA-CTTCTTTCAT
257 TGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCAT
* * *
239787 GTTGTGATTAGGCACTGTAAACACATTCTTCACATTAGGATAAAGGATAATTATGATTTTCTTTT
321 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* *
239852 GCATTGAAATCTTTTCTTCGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAG
386 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAA-
* *
239917 A-ATTGATTCTCATAACAATCTCCA
450 ACATTGATTCTCGTAACAGTCTCCA
* * *
239941 TTCTTTTCAAGAATGGGAAACAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
1 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
*
240006 GTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
66 GTGATGCAAAAAAAGCTTTTCTTACCATCG--TTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * **
240071 ACAAACATGAAGAGTCATACTAATCCCTATTCCTTTCAATATTTGGCAGAATAAAGCATAGTCTT
129 ACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAA-CATAGTCTT
* * * *
240136 CTCATAAGGATACAAGATATTGATGCTTTGGTTTTGCGAGAAAAGCTTTTTTCCCACCAATTTTT
193 CTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
* * * * *
240201 GTAAAGTCTAACTTCATGCCTCAATTGAGACAAATATGGATTCTAGTATTGGA-CTTCATTCATT
258 GTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCATT
* *
240265 TTGTGATTAGGCACTGTAAACACATTCTTCACATTAGGATAAAGGATAATTATGATTTTCTTTTG
322 TTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
* * * * *
240330 CATGGAAATATTTCCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGATAAAC
387 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAAC
* * *
240395 ATCGATTCTCGTAACTGT-TTCA
452 ATTGATTCTCGTAACAGTCTCCA
* * * * *
240417 TTCTTTTCAAGATTGGGAACCAAAAACACATTTCGTTCATTAGCG-TACATGACACTATTACTTT
1 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG-GATACATGACATTAATGCTTT
* ** * *
240481 GGTAACACAAAAAAAGCTTTTCTTACCA-CTGTTTTTGATAGAATCAAAATTTGTGTCTTAAATA
65 GGTGATGCAAAAAAAGCTTTTCTTACCATC-G--TTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
240545 AGAGAAAC-TAGAATAGTCATACTAATCCCTGTTCTTTTCACGATTAGACACCA-AAAGCGTAGT
127 AGACAAACAT-GAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAA-CATAGT
* * * * * * *
240608 CTTCTCATAGGGATACACGATATTGATACTTTGGTTTTGAAAGAAAGGCTTTCTTCCCTCCAATT
190 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATT
** **
240673 TTTGTAAAGTCTGACAGCGTGCCTCAAATGAGACAAACATGGATTCTTCTAATGACCTTCATTCA
255 TTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCA
* ** * *
240738 ATTTGTGATTAGGCGTTATAAACTCATTCTTCACATTAGGATAAAGGATAATGACGATTTTCTTT
320 TTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
*
240803 TGCATGGAAATCTTTTCTTTGCCTTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAA
385 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAA
* *
240868 ACATTGATTCTTGTAATAGTAC-CCA
450 ACATTGATTCTCGTAACAGT-CTCCA
* * * * * * *
240893 TTCTTTTCGAGATTGGGAACAAAAAACATATTCCCTTCATTAGGATGCATGAAATTATTGCTTTT
1 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
* * * * ** * * * * *
240958 GTGACGCAAAAAAAAAACACTTT-TTACCCCTTTTTTGATGGATTCAAA-TTGTGTAT-TTCTAG
66 GTGATGC--AAAAAAAGC-TTTTCTTA-CCATCGTTTGATAGAATCAAAGTT-TGTCTCTT-AAA
* * * * * * * * * **
241020 CAAGAGAAAC-TAGAACACTCATACTAGTCCTTGTTCTTTTCAGGATTAGACAAAATAAACATAG
125 TAAGACAAACAT-GAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAG
* * *** * * *
241084 TCTTCTCAAAAGGATACATGATATTGATGCTTTGGTTTTGTTGGAAAAGCATTCTTCCTC-CCAA
189 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-CACCAA
* * * *
241148 TTTTTGTAAAG--T--CTTCATGCCTCAAATGAGACAAACATTGATTCAAGTAATGATCTTCATT
253 TTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
* * * * * * * * *
241209 CATTTTGGGATTAGGCGCTACAAACACCTTCTCCGCATTAGGATAAATGTTATTGATGATTTT-T
318 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCT
* * * * * * *
241273 TTT-CATAGAAATCTTTTCTCTGCCCTATTTACCATAAAATCAAAGTTCATCACTTAAATAAGGC
383 TTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGAC
* * *
241337 AAGCATTGATTCTCATAATAGTCTCCA
448 AAACATTGATTCTCGTAACAGTCTCCA
* * * * *
241364 TTCTTTTTAAGATTGGGGACCAAAAACACATTCCTTTCATTAGGATACATGACATAAATGCTATG
1 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
* * * *
241429 GTGATGCAAAAAATGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
66 GTGATGCAAAAAAAGCTTTTCTTACCATC--GTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* ** * *
241494 AC-AACATGAAGAATCATACTAATCCCTATGATTTTCAATATTCGGCACCATAAACATAGTCTTC
129 ACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * *
241558 TCATAAGGATACACT-ATATTGATGCTTTGCTTTCACAACAAAGGCTTTTTTTCC-CTAATTTTT
194 TCATAAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
* *
241621 GTAAAGTCTGACTTCGTGCCTTAAATGAGACAAACATAGATTCTAGTAATGACCTTCATTCATTT
258 GTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTT
* * *
241686 TGTGATTAGGCAATACAAACACATTCTTCACATTATGATAAAGGATAATGATGATTTTCTTTTGC
323 TGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
* * * *
241751 ATGGAAATCTTTACTTTGCCTTATTTACCTTAAAATCAAAGTTCGTCCCTTAAATAAGACAAGCA
388 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAACA
* * **
241816 TCGATTCTAGTAACTA-TCTCTG
453 TTGATTCTCGTAAC-AGTCTCCA
*
241838 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-ATTAGGATACATGACATTATTGCTTTG
1 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
* * * *
241902 GTGATGCAAAAAAAGCTTTTGTTACCATCATTTTTGATAGAATCAAAATTTGTCTCTTAAATATG
66 GTGATGCAAAAAAAGCTTTTCTTACCATC--GTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
241967 AGAAAC-TAGAATAGTCATACTAATCCC-AGTTCTTTTTAGGATTAGGCACCATAAACATAGTCT
129 ACAAACAT-GAAGAGTCATACTAATCCCTA-TTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * * * *
242030 TCTCATAAGGATACACGATACTAATGTTTTGGTTTTC-AAAGAAAGGCGTTCTTCCCACCAATTT
192 TCTCATAAGGATACATGATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTT
* * * * * ** *
242094 TTGCAATGTTTGACTGCGTGCCTCAAATGAGACAAACATTGATTCCGGTAATGATCTTCATTCAT
256 TTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCAT
* * * * * * * * * *
242159 TTTGGGATTACGCACTATTAATACCTTCTCCTCATTAGGATAAATGCTATTGATGATTTTCTTTT
321 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * * * * * * *
242224 GCATGAAAATCTTTTCTTTGCCCTATTAACCTTAAAATCAAAGTTCATACCTCAAATAAGGCAAG
386 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAA
* * * *
242289 CATCGAGTCTCGTAATAGTCCCCA
451 CATTGATTCTCGTAACAGTCTCCA
* * * ** * *
242313 CTCTTTTCTAGATTTGGAACCAAAAA-ACCATTTTCTTCATTAGGATACATGACAATAATGCTAT
1 TTCTTTTCAAGATTGGGAACCAAAAACA-CATTCCCTTCATTAGGATACATGACATTAATGCTTT
* *
242377 GGTGA--CATAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
65 GGTGATGCA-AAAAAA-GCTTTTCTTACCATCG--TTTGATAGAATCAAAGTTTGTCTCTTAAAT
** *
242440 AAGACAAACATGAAGAGTTGTACTAAT-CCTAATGT-TTTTCAAGGTTAGGCACCATAAA
126 AAGACAAACATGAAGAGTCATACTAATCCCT-AT-TCTTTTCAAGATTAGGCACCATAAA
242498 TGATGACAAC
Statistics
Matches: 3391, Mismatches: 509, Indels: 169
0.83 0.13 0.04
Matches are distributed among these distances:
468 20 0.01
469 96 0.03
470 26 0.01
471 138 0.04
472 101 0.03
473 208 0.06
474 286 0.08
475 999 0.29
476 659 0.19
477 731 0.22
478 122 0.04
479 5 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (474 bp):
TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
GTGATGCAAAAAAAGCTTTTCTTACCATCGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
ATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
AAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGT
GATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG
GAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAACATTG
ATTCTCGTAACAGTCTCCA
Found at i:240223 original size:952 final size:944
Alignment explanation
Indices: 238059--242497 Score: 5130
Period size: 952 Copynumber: 4.7 Consensus size: 944
238049 ATTAGGAGCA
* * *
238059 AAAAACACATTTCCTTCATTAGGATACATGACATTAATGCTATGGTGATGCAAAAAATGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTT-
238124 TTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAAGAGTCATACT
64 TTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACT
* * * *
238189 AAT-CCTAAATT-TTTTCAAGATTAGGCACCATAAACGTAGTTTTCTAATAAGGATACTCTG-TA
128 AATCCCT--ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC-GATA
* *
238251 TTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGCCTAACTTCGTGCC
190 TTGATGCTTTGGTTTTACAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCC
* *
238316 TCAAATGAGACAAACATGAATTCTAGTAATGACCTTCATTCATTTTGTAATTAGGCACTATAAAC
255 TCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
238381 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAGTCTTTTTTTTGCC
320 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
238446 TTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAAC-TTCGATTCTTGTAACAATCT
385 -TATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATT-GATTCTCGTAACAGTCT
* * * * *
238510 CCATTTTGTTAAAGATTGGGTACCAAAAACACGTTTCCTTCATTAGGATACATGACATTGATGTT
448 CCATTTT-TTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTAATGCT
** * *
238575 TTGGTGACGCAAAAAAAGCTTTTCTTCCCACCATTTTTGATAGAATAAAAATTTGTCTCTTAAAT
512 TTGGTGACGCAAAAAAAGCTTTTCTT---ACCATCGTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
238640 AAGAGAAACTAT-AATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAATGC--A
574 AAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAA-ACATA
* * *
238702 GTCTTCTCACAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCTCCAA
637 GTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTCGAAAGAAAGGCTTTCTTCCCTCCAA
** * * * *
238767 TTTTTGTATTGTCTGACTGCGTGCCTCAAATGAGGCAAACATTGATTCTAGTAATGATCTTCTTT
702 TTTTTGTAAAGTCTGACTGCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
* * * * * * * * *
238832 CATTTTGGGATTAGGCACTATAAACTCCTTCTCCTCATTAGGATAAATGTTATTAATGATTTTCT
767 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCT
* * *
238897 TTTGCATTGAAATCTTTTCTTTGCCCTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGGC
832 TTTGCATGGAAATCTTTTCTTTGCCTTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGAC
* * ** * * * * *
238962 AAGCATCGAGTCTCGCAATAGTCTTCATTCTTTTCTAGATTGGGAACC
897 AAGAATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAAAC
* * * * * *
239010 AAAAACAAATTTCCTTCATTAGGATACATGATATTAATGCTATGGTTATGCAAAAAATGCTTTTT
1 AAAAACACATTCCCTTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTTT
* * * *
239075 TAACCACCGTTTTTGACT-GAATTAAAGTTTGTCTCTTAAATAAGACAAACATAAAGAGCCTTAC
65 T-ACCACCGTTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATAC
* * * *
239139 TAATCCCATTTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACTATA
127 TAATCCC--TATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * *
239204 TTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCAATTTTTGTAATGTCTCACTTCGTGCC
190 TTGATGCTTTGGTTTTACAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCC
* * *
239269 TCAAATGAGACAAACATGGATTCTAGTACTTACCGTCATTCATTTTGTGATTAGGCACTATAAAC
255 TCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * *
239334 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTTGCGTGGAAGTCTTTTTTTTGC
320 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGC
* *
239399 CTATTTACCTTAAAATCAAAGTTCAACCCTTAAATGAGACAAACATTGATTCTCGTAACAATCTC
384 CTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATTGATTCTCGTAACAGTCTC
* * *
239464 CATTTTGTTCAAGATTGGGTACCAAAAACACGA-TCCCTTCATTAGGATACATGACATTGATGCT
449 CATTTT-TTCAAGATTGGGAACCAAAAACAC-ATTTCCTTCATTAGGATACATGACATTAATGCT
* *
239528 TTGGTGATGCAAAAAAAGCTTTCCTTAACCATCGTTGATAGAATCAAAGTTTGTCTCTTAAATAA
512 TTGGTGACGCAAAAAAAGCTTTTCTT-ACCATCGTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
239593 GACAAACATGAAGAGTCATACTAACCCCTATTCCTTTCAAGATTTGGCACCATAAAACATAGTCT
576 GACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAAACATAGTCT
* * * * * *
239658 TCTCATAAGGATACATGATATTGGTACTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTT
641 TCTCATAAGGATACACGATATTGATACTTTGGTTTCGAAAGAAAGGCTTTCTTCCCTCCAATTTT
* * * * * * * *
239723 TGTAAAGTCTAATTTCGTGCCTCAATTGACACAAATATGGATTCTAGTATTGGA-CTTCTTTCAT
706 TGTAAAGTCTGACTGCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCAT
* * *
239787 GTTGTGATTAGGCACTGTAAACACATTCTTCACATTAGGATAAAGGATAATTATGATTTTCTTTT
770 TTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * *
239852 GCATTGAAATCTTTTCTTCGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAG
835 GCATGGAAATCTTTTCTTTGCCTTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAG
* *
239917 AATTGATTCTCATAACAATCTCCATTCTTTTCAAGAATGGGAAAC
900 AATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAAAC
239962 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACATGACATT-ATGCTTTGGTGATGCAAAAAAAGCTTTT-
240027 TTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACT
64 TTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGAAGAGTCATACT
* * * ** *
240092 AATCCCTATTCCTTTCAATATTTGGCAGAATAAAGCATAGTCTTCTCATAAGGATACAAGATATT
128 AATCCCTATTCTTTTCAAGATTAGGCACCATAAA-CATAGTCTTCTCATAAGGATACACGATATT
* * * *
240157 GATGCTTTGGTTTTGCGAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCATGCCT
192 GATGCTTTGGTTTTACAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCT
* * * *
240222 CAATTGAGACAAATATGGATTCTAGTATTGGA-CTTCATTCATTTTGTGATTAGGCACTGTAAAC
256 CAAATGAGACAAACATGGATTCTAGTAAT-GACCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * *
240286 ACATTCTTCACATTAGGATAAAGGATAATTATGATTTTCTTTTGCATGGAAATATTTCCTTTGCC
320 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
240351 TTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGATAAACATCGATTCTCGTAACTGT-TT
385 -TATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATTGATTCTCGTAACAGTCTC
* * * *
240415 CATTCTTTTCAAGATTGGGAACCAAAAACACATTTCGTTCATTAGCG-TACATGACACTATTACT
449 CATT-TTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATTAG-GATACATGACATTAATGCT
* * * *
240479 TTGGTAACACAAAAAAAGCTTTTCTTACCA-CTGTTTTTGATAGAATCAAAATTTGTGTCTTAAA
512 TTGGTGACGCAAAAAAAGCTTTTCTTACCATC-G---TTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * * *
240543 TAAGAGAAAC-TAGAATAGTCATACTAATCCCTGTTCTTTTCACGATTAGACACCA-AAAGCGTA
573 TAAGACAAACAT-GAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAAACATA
* *
240606 GTCTTCTCATAGGGATACACGATATTGATACTTTGGTTTTGAAAGAAAGGCTTTCTTCCCTCCAA
637 GTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTCGAAAGAAAGGCTTTCTTCCCTCCAA
* **
240671 TTTTTGTAAAGTCTGACAGCGTGCCTCAAATGAGACAAACATGGATTCTTCTAATGACCTTCATT
702 TTTTTGTAAAGTCTGACTGCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATT
* ** * *
240736 CAATTTGTGATTAGGCGTTATAAACTCATTCTTCACATTAGGATAAAGGATAATGACGATTTTCT
767 CATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCT
240801 TTTGCATGGAAATCTTTTCTTTGCCTTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGAC
832 TTTGCATGGAAATCTTTTCTTTGCCTTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGAC
* ** * * *
240866 AA-ACATTGATTCTTGTAATAGTAC-CCATTCTTTTCGAGATTGGG-AAC
897 AAGA-ATCGATTCTCATAACAAT-CTCCATTCTTTTCAAGATTGGGAAAC
* * * * * * *
240913 AAAAAACATATTCCCTTCATTAGGATGCATGAAATTATTGCTTTTGTGACGCAAAAAAAAAACAC
1 -AAAAACACATTCCCTTCATTAGGATACATGACATTA-TGCTTTGGTGATGC--AAAAAAAGC-T
* * * * * ** * * *
240978 TTTTTACC-CCTTTTTTGATGGATTCAAA-TTGTGTAT-TTCTAGCAAGAGAAACTAGAACACTC
61 TTTTTACCACCGTTTTTGATAGAATCAAAGTT-TGTCTCTT-AAATAAGACAAACT-GAAGAGTC
* * * * * ** * *
241040 ATACTAGTCCTTGTTCTTTTCAGGATTAGACAAAATAAACATAGTCTTCTCAAAAGGATACATGA
123 ATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
**** * * *
241105 TATTGATGCTTTGGTTTTGTTGGAAAAGCATTCTTCCTC-CCAATTTTTGTAAAG--T--CTTCA
188 TATTGATGCTTTGGTTTTACAAGAAAGGC-TTTTTCC-CACCAATTTTTGTAAAGTCTAACTTCG
* * * * * *
241165 TGCCTCAAATGAGACAAACATTGATTCAAGTAATGATCTTCATTCATTTTGGGATTAGGCGCTAC
251 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * * *
241230 AAACACCTTCTCCGCATTAGGATAAATGTTATTGATGATTTT-TTTT-CATAGAAATCTTTTCTC
316 AAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * * *
241293 TGCCCTATTTACCATAAAATCAAAGTTCATCACTTAAATAAGGCAAGCATTGATTCTCATAATAG
381 TG-CCTATTTACCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATTGATTCTCGTAACAG
* * *
241358 TCTCCATTCTTTTTAAGATTGGGGACCAAAAACACA-TTCCTTTCATTAGGATACATGACATAAA
445 TCTCCATT-TTTTCAAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGATACATGACATTAA
* * * ** *
241422 TGCTATGGTGATGCAAAAAATGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTTATCTCTT
508 TGCTTTGGTGACGCAAAAAAAGCTTTTCTT---ACCATCGTTGATAGAATCAAAGTTTGTCTCTT
* ** * *
241487 AAATAAGAC-AACATGAAGAATCATACTAATCCCTATGATTTTCAATATTCGGCACCAT-AAACA
570 AAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAAACA
* * * * *
241550 TAGTCTTCTCATAAGGATACACTATATTGATGCTTTGCTTTC-ACAACAAAGGCTTTTTTTCCCT
635 TAGTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTCGA-AAGAAAGGC-TTTCTTCCCT
* * *
241614 --AATTTTTGTAAAGTCTGACTTCGTGCCTTAAATGAGACAAACATAGATTCTAGTAATGACCTT
698 CCAATTTTTGTAAAGTCTGACTGCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTT
* * *
241677 CATTCATTTTGTGATTAGGCAATACAAACACATTCTTCACATTATGATAAAGGATAATGATGATT
763 CATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATT
* * * *
241742 TTCTTTTGCATGGAAATCTTTACTTTGCCTTATTTACCTTAAAATCAAAGTTCGTCCCTTAAATA
828 TTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTAACCTTAAAATCAAAGTTCATCCCTTAAATG
* * ** *
241807 AGACAAGCATCGATTCT-AGTAACTATCTCTGTTCTTTTCAAGATTGGGAACC
893 AGACAAGAATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGAAAC
241859 AAAAACACATTCCCTT-ATTAGGATACATGACATTATTGCTTTGGTGATGCAAAAAAAGCTTTTG
1 AAAAACACATTCCCTTCATTAGGATACATGACATTA-TGCTTTGGTGATGCAAAAAAAGCTTTT-
* * * * * *
241923 TTACCATCATTTTTGATAGAATCAAAATTTGTCTCTTAAATATGAGAAACTAGAATAGTCATACT
64 TTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACT-GAAGAGTCATACT
* * *
241988 AATCCC-AGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACT
128 AATCCCTA-TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * * * * * * *
242052 AATGTTTTGGTTTT-CAAAGAAAGGCGTTCTTCCCACCAATTTTTGCAATGTTTGACTGCGTGCC
192 GATGCTTTGGTTTTAC-AAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCC
* ** * * * * *
242116 TCAAATGAGACAAACATTGATTCCGGTAATGATCTTCATTCATTTTGGGATTACGCACTATTAAT
255 TCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * * * * *
242181 ACCTTCTCCTCATTAGGATAAATGCTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
320 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-C
* * * * * * * *
242246 CTATTAACCTTAAAATCAAAGTTCATA-CCTCAAATAAGGCAAGCATCGAGTCTCGTAATAGTCC
384 CTATTTACCTTAAAATCAAAGTTCA-ACCCTTAAATAAGACAAACATTGATTCTCGTAACAGTCT
* * * * *
242310 CCACTCTTTTCTAGATTTGGAACCAAAAA-ACCATTTTCTTCATTAGGATACATGACAATAATGC
448 CCA-TTTTTTCAAGATTGGGAACCAAAAACA-CATTTCCTTCATTAGGATACATGACATTAATGC
* ** * * *
242374 TATGGTGACATAAAAAATGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
511 TTTGGTGACGCAAAAAAAGCTTTTCTTACCATCG---TTGATAGAATCAAAGTTTGTCTCTTAAA
** *
242439 TAAGACAAACATGAAGAGTTGTACTAAT-CCTAATGT-TTTTCAAGGTTAGGCACCATAAA
573 TAAGACAAACATGAAGAGTCATACTAATCCCT-AT-TCTTTTCAAGATTAGGCACCATAAA
242498 TGATGACAAC
Statistics
Matches: 3007, Mismatches: 400, Indels: 162
0.84 0.11 0.05
Matches are distributed among these distances:
941 3 0.00
942 14 0.00
943 133 0.04
944 35 0.01
945 228 0.08
946 161 0.05
947 222 0.07
948 98 0.03
949 182 0.06
950 78 0.03
951 354 0.12
952 962 0.32
953 493 0.16
954 41 0.01
955 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (944 bp):
AAAAACACATTCCCTTCATTAGGATACATGACATTATGCTTTGGTGATGCAAAAAAAGCTTTTTT
ACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTGAAGAGTCATACTAAT
CCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
CTTTGGTTTTACAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTATTTA
CCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATTGATTCTCGTAACAGTCTCCATTTTT
TCAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTAATGCTTTGGTGACG
CAAAAAAAGCTTTTCTTACCATCGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
AAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAAACATAGTCTTCTCATAAGG
ATACACGATATTGATACTTTGGTTTCGAAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCT
GACTGCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAG
GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATC
TTTTCTTTGCCTTATTAACCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAGAATCGATTCTC
ATAACAATCTCCATTCTTTTCAAGATTGGGAAAC
Found at i:243174 original size:42 final size:42
Alignment explanation
Indices: 243084--243174 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
243074 CACACTGATT
*
243084 TTTCTCTCCTGTCTCTCCTCCTATCATCCCTCCTATTTCTAC
1 TTTCTCTCCTGTCTCTCCTCCTATCATCCCTCCTATCTCTAC
* * *
243126 TATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTC
1 TTTCTCTCCTGTCTCTCCTCCTATCATCCCTCCTATCTCTAC
243168 TTTCTCT
1 TTTCTCT
243175 TTGAGGGCTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.08, C:0.44, G:0.02, T:0.46
Consensus pattern (42 bp):
TTTCTCTCCTGTCTCTCCTCCTATCATCCCTCCTATCTCTAC
Found at i:250186 original size:477 final size:476
Alignment explanation
Indices: 244789--255404 Score: 12714
Period size: 476 Copynumber: 22.4 Consensus size: 476
244779 GTTTTCATCA
* * *
244789 ATAAACATAGTCTTCTCATACGAATACACT-ATATTGATGCTTTGCTTTCACAAGAAAGGCTTTT
1 ATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* **
244853 TTCCCTCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACTTACATGGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
244918 GACATTCATTCATTTTGTGATTAGGCAGTATAAATACATTCTTCACATTAGGATAAAGGACAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * *
244983 ATGATTTTCTTTTGCATGAAAATTTTTTCTCTGCCTTATTTACCATAAAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * * * * * * *
245048 TGAATGAGACGAGCATCGATTCTCGTTAACAATCGCTATTCTTTTCAAGATTGGGAACTAAAAAC
260 TAAATAAGACAAGCATCGATTCTCG-TAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * * *
245113 ACATTCTCTTCATTAGGACAAATGACGTTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCA
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCA
* * * * *
245178 TCGTTTTTGATAAAATC-AAAGTT-TCTCTTAAATAAGACAAACATGAAGAGTCATACTAACCCC
389 CCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * *
245241 TATTCCTTTCATGATTTGGCACC
454 TATTCTTTTCAAGATTAGGCACC
* ** *
245264 ATAAAATATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
1 AT-AAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* * * * *
245329 TTCCCACCAATTTTTGGAAAGTCTAACTTCGTGCCTCAATTGAGACAAATATGGATTCTAGTATT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
245394 GGA-CTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTTCACATTAGGATATAGGATAAT
130 -GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* * *
245458 GATGATTTTCTTTTGCATGAAAATATTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
* * *
245523 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCCTTCGTTTCAAGATTGGGAACCAAAAAC
259 TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * * *
245588 ACGTTCCCTTCATTAGGATACATGACA--AATTGCTTTGTTGATGCAAAAAAAGCTTTTCTTACC
324 ACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTACC
* * *
245651 ATCGTTTTTAATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCC
388 ACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* *
245716 CTATGT-TTTTTAAGATTAAGCACC
453 CTAT-TCTTTTCAAGATTAGGCACC
* * * * *
245740 ATAAACAAAGCCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTC
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTT
* * * * * *
245804 TTCCC-CCTAATTTTTGTAAACTCTAACTTCATGCCTTAAATAAGACAAACATTGATTCTAGTAA
65 TTCCCACC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * * * * ** * * *
245868 TGATCTTCATTCATTTTGGGATTAGGCATTACAAACACCTTCTCCTGATTAGGATAAATGTTACT
129 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* ** * * * *
245933 GATAAAATT-TTTGGCATGGAAATCTTTTCTCTGCCCTATTTACCTTAAAATCAAAGTTAATCCC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
* * * * *
245997 TTAAATAAGACAAGCATCGATTCTCGT--TAGTGTTCATTATTTTCAAGATTTGGAGCCAAAAAC
259 TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * *
246060 ACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGATGCAAAAAATAGCTTTTCTAACC
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAA-AGCTTTTCTTACC
* * * * * *
246125 ACCATTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATATTCAGACTAATCC
388 ACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
*
246190 CTATTCTTTTCAAGATTTGGCACC
453 CTATTCTTTTCAAGATTAGGCACC
* * * *
246214 ATAAACATAGTCTTCTCATAAGTATACATGATATCGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
* * * * * *
246279 TCCAACCAATTTTTGTAAAGTCTAACTTTGGGTCTCAAATGAGACAAACATGGATTCTAGTATTG
66 TCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-
246344 GA-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * *
246408 ATGTTTTTCTTTTGCATGGAAATCTGTTCTTTGCCTTATTTGCCTTAAAACCAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * * *
246473 TAAATAAGACAAGCATCAATTCTTGT--TAGTCTTCATTATTTTCAAGATTGGGAACCAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* *
246536 CATTCCCTTCATTAGGATACATGACATT-ATTGCTTTGGTGACGCAAAATAAGCTTTTCTTATCA
325 CATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCA
* ** * *
246600 ACAATTTTGATAGAATCAAAATTTGTCT-TTGAAATTAGAGAAAC-TAGAATAGTCATACTAATC
389 CCGTTTTTGATAGAATCAAAATTTGTCTCTT-AAATAAGACAAACAT-GAATAGTCATACTAATC
* *
246663 CTTGTTCTTTTCAAGATTAGGCACC
452 CCTATTCTTTTCAAGATTAGGCACC
* * * * * *
246688 ACAAACATAGTCTTCTCATAAGGGTACATGATATTGATGCTTTGATTTTGA-AAGAAAGGCCTTC
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTG-GTTTCACAAGAAAGGCTTTT
* * * * *
246752 TTCCCCCCAATTTTCGTAAAG--T--CTTCATGCCTCAAATGAGACAAACATTGACTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * * * * * ** * * * *
246813 GATCTTCTTTCATTTTGGGGTTAGGCACAACAAACACCTTCTCCTCAAAAGGCTAAATGTTATTG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * *
246878 ATGATTTT-TTTTGCATCGAAATCTTTTCTCTACCCTATTTACCTTAAAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* *
246942 TAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAATCA
260 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* * ** ** * * *
247007 CATTCCTTTCATTAGGAGACATGACATAAATGCTACGGTGACGCGAAAAATGCTTTTCTTACTAC
325 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCAC
* * * *
247072 CGTTTTGGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTGATCCCT
390 CGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCT
* *
247137 CTGT-TTTTCAAGATTAAGCACC
455 AT-TCTTTTCAAGATTAGGCACC
247159 ATAAACATAGTCTTCTCATAAGGATACACT-ATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
1 ATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
** * *
247223 TTCCCACCAATTTTTGTAAAGTCTGACTTCAAGCCTCAAATGAGACAAAAATAGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
247288 GACCTTCATTCATTTTGTGATTAGGCACTAT-AACGATATTCTTCATATTAGGATAAAGGATAAT
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAAC-ACATTCTTCACATTAGGATAAAGGATAAT
247352 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAATCAAAGTTCATCC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTT-AAAATCAAAGTTCATCC
* ** *
247417 CTTAAATAAGACAAGCATCGATTCTAGTAACT-GTCTCTGTTCTTTTCAAGAATGGGAA-C----
258 CTTAAATAAGACAAGCATCGATTCTCGTAA-TAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
* *
247476 -CA-A------TCATTAGGATACATGACATTGTTGCTTTGGTGATGCAAAAAAAGCTTTTCTTAC
322 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTAC
* * * * *
247533 CACCATTTTTGATAGAGTCAAAATTTGTGTCTTAAATAAGAGAAAC-TAGAATAGTGATACTAAT
387 CACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAATAGTCATACTAAT
*
247597 -CCTAGTTCTTTTCAGGATTAGGCACC
451 CCCTA-TTCTTTTCAAGATTAGGCACC
* * * *
247623 ATAAACGTAGTCTTCACATAAGGATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTT
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTT
* * *
247687 TTCCC-CCAATTTTTGTAATGTCTGACTGT-GTGCCTCATATGAGACAAACATTGG-TTTTAGTA
65 TTCCCACCAATTTTTGTAAAGTCTGACT-TCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTA
* * * * * * *
247749 ATAATCTTCTTTCATCTTGGGATTAGGCACTATAAACACCATCTCTT--CATTAGGATAAATGTT
128 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACA-CAT-TCTTCACATTAGGATAAAGGAT
* * * * * * *
247812 ATTGATGATTTTCTTTTACAGGGAAATCTTTTCTTTGCCCTATTAATCTTATAATCAAAGTTCAT
191 AATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAT
* * * * * *
247877 CCCTTAAATAAGGCAAGCATCGAGTCTCGCAATAATCTCCATTCTTTTCTAGATTGGGAACAAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * * ** * *
247942 AACACATTTCCTTTATTAGGATACAAGATATTAATGCTATGGCAACGCAAAAAATGTTTTTCTTA
321 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTA
* * * *
248007 CCACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAAT
386 CCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
248072 CCCTATT-TTTCTCAAGATTAGGCACC
451 CCCTATTCTTT-TCAAGATTAGGCACC
* *
248098 ATAAAAATAGTCTTCTCATAAGGATACACT-ATATTGATGCTTTAGTTTCACAAGAAAGGC-TTT
1 ATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* ** *
248161 TTCCCACCACTTTTTGTAAAGTCTGACTTTTTGCCTCAAATGAGACAAACATGGATTCTAGCAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
248226 G-CCTTCATTCAATTTGTGATTAGGCACTATAAATACATTCTTCACATTAGGATAAAGGATAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* *
248290 ATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCTTATTTACCTTATAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
** * *
248355 TAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCTTTTGAAGATTGGGAACCAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* * * *
248420 CA-TCCCTGCATTAGGATACATGACGTTGATGCTTTGGTGATGCAACAAAAGCTTTTCTTACCAC
325 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCAC
* *
248484 CATTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCC
390 CGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAATAGTCATACTAATCCC
* *
248548 TATTCTTCTCACGATTAGGCACC
454 TATTCTTTTCAAGATTAGGCACC
* * * *
248571 ATAAACGTAGTCTTCTCGTAAGGATACATGATATTAATGCTTTGGTTT----AGAAAGGCTTTCT
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
* * * * * *
248632 TCCCCCCAATTTTTGCAAAGTCCGACTAT-GAGCCTCAAAAGAAACAAACATGGATTCTAGTAAT
66 TCCCACCAATTTTTGTAAAGTCTGACT-TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * *
248696 GACCTTCATTCATTTTGTGCTTAGGCATTATAAACCCATTCTTCACATTAGGATAAAAGATAATT
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
*
248761 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCA
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* *
248826 TAAATAAGACAAGCATCGATTCTTGTAATAGT-TCTCATTCTTTTCAAGATTGGGAATCAAAAAC
260 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTC-CATTCTTTTCAAGATTGGGAACCAAAAAC
* * * *
248890 A-ATTCCCATCATTGGGATACATGACATT-ATTGCTTTGGTGACGCAACAAAAGCTTTTCTTACA
324 ACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTACC
* * *
248953 ACTGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATC
388 ACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAATAGTCATACTAATC
* *
249017 CCTGTTCTTTTCAGGATTAGGCACC
452 CCTATTCTTTTCAAGATTAGGCACC
* * * *
249042 ATAAACATAGTCTTCACATAAGGATACACGATATTGATGCTTTGGTTTTAAAAGAAAGGCTTTCT
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-T
* * * * * * *
249107 TCCCCCCCAATTTTGGTAATGCCTGACTGCGTGCCTC-AAT-AGACAAGGACATTGATTCTAGTA
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAA--ACATGGATTCTAGTA
* * * * * * * * *
249170 ATGATCTTCTTTCATTTTGGGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGTTAT
128 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAA
* * * * *
249235 TTATGATTTTCTTTTCCATAGAAATCTTTTCTTTGCCTTATTAACCTTAAAATCAAACTTCATCC
193 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
* * * * * * *
249300 CTTAAATAAGGCAAGCTTCGAGTCTCGT-ATAGTCTTCATTTTTTTCTAGAATGGGAA-CAAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAA
* * * *
249363 TCACATTTCCTTCATTAGGATACATGACACT-AGTGCTATGGTGACGCAAAAAATGCTTTTCTTA
323 -CACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTA
* * * * * *
249427 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAAGAGTCCTATTAAT
386 CCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
*
249492 CCCAATT-TTTTCCAAGATTAGGCACC
451 CCCTATTCTTTT-CAAGATTAGGCACC
* *
249518 ATAAACATAGTCGTCTAATAAGGATACACT-ATATTGATGCTTTGGTTTCACAAGAAAGGC-TTT
1 ATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
*
249581 TTCCCACCAATTTTTGTAAAGTCTGACTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
249646 GACCTTTATTCATTTTGTGATTAGGCACGATAAACACAATCTTCACATTAGGATAAAGGATAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * *
249711 ACGATTTTCTTTTGCATGGAAATCTTTTGTTTGCCTTATTTACCTAAAAATCAAAGTTTATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * * * * *
249776 CAAA-AGAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCAAGAATGGAAACCAAAAAC
260 TAAATA-AGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
*
249840 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCA
* * * *
249905 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCAAACTAACCCC
389 CCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* *
249970 TATTCCTTTCAAGATTTGGCACC
454 TATTCTTTTCAAGATTAGGCACC
* * *
249993 ATAAAACATAGTTTTCTCATAAGGATACATGATATTGATACTTTGGTTTCACAAGAAAAGCTTTT
1 AT-AAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* * * *
250058 TTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTTAATTGAGACAAATATGGATTCTAGT-AT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
250122 CGGA-CTTCATTCATTTTCTGATTAGGCACTTTAAACACATTCTTCACATTAGGATAAAGGATAA
130 --GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAA
* * * * * * * *
250186 TTATGATTTTCTTTTGCACGAAAATATTTCCATTGCCTTATTTACCTTAAAATCAAAATTCAACC
193 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
* * *
250251 CTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCTTTTCAAAATTGGGAACCAAATA
258 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAA-A
* *
250316 A-ACATTCCCTTCATTAGCATACATGACATT-ATTGCTTTGGTGACGCAAAAAAAAACTTTTCTT
322 ACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGC-AAAAAAAGCTTTTCTT
**
250379 ACCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGAGTAAC-TAGAATAGTCATACTA
385 ACCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAATAGTCATACTA
* *
250443 ATCCTTATTCTTTTCATGATTAGGCACC
449 ATCCCTATTCTTTTCAAGATTAGGCACC
* * * * * * *
250471 ATAGACGTAGTCCTT-TCATACGGATACACGATATTGATGATTTGGTTTTGA-AACAAAGGCTTT
1 ATAAACATAGT-CTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTT
* * * * * * * *
250534 TTTCCCCCCAATTTTTGCAAAGTCCGACTGCATACCTTAAATGAGACAAACATAGATTCTAGTAA
64 TTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
250599 TGACCTTCATTCATTTTGTGATTGGGCATTATAAACCCATTCTTCACATTAGGATAAAGGATAAT
129 TGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* *
250664 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTGT-TTTACCTTAAAATCAAGGTTCTTCC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTACCTTAAAATCAAAGTTCATCC
* **
250728 CTTAAATAAGACAAGCATCGATTCTTGTAATAGT-TCCCATTCTTTTCAAGATTGAAAACCAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAA
* * * ** * *
250792 ACACATTCCCATCATTAGGATACAAGAAATTCTTGCTTTGGTGATGCAAAAAAAGCTTTTTTTAC
322 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTAC
* * * * *
250857 CACCATTTTTGATAGATTCAAAATATGTCTCTCAAATAAGAGAAAC-TAGAATCA-TCATACTAA
387 CACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAAT-AGTCATACTAA
* * * *
250920 TCCTTGTTCTTTTTAGGATTAGG----
450 TCCCTATTCTTTTCAAGATTAGGCACC
* ** * * *
250943 -----C--AGTCTTCTCATAAAGATACGCGATATTGATCCTTTGGTTTTGA-AAGAAATGCTTTC
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTT-
* * *
251000 TTTCTC-CCAATCTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAAACATGAATTCTAGTA
64 TTTCCCACCAAT-TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * *
251064 ATGACCTTCATTCATTTTGTGATTAGGCATTATAAACACATTTTTCACATTAAGATAAAGAATAA
128 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAA
*
251129 TGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
193 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
* * * * * *
251194 CTTAAATAAGGCAAGCATCGAGTCTCGTAATAGTCTTCATTTTTTTTCTAGAATGGGAA-CAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA-TTCTTTTCAAGATTGGGAACCAAAA
* * * *
251258 ATCACATTTCCTTCATTAGGATACATGACATTAATGCTATGGTGACGCAAAAAATGCTTTTCTTA
322 A-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTA
* * *
251323 CCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAAT
386 CCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * *
251388 CCCAATTTTTTTTGAAGATTAGGCACC
451 CCCTA-TTCTTTTCAAGATTAGGCACC
* *
251415 ATAAACATAGTCTTCTAATAAAGATACACT-ATATTGATGCTTTGGTTTCACAAGAAAGGC-TTT
1 ATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* * * *
251478 TTCCCACCAATTTTTGCAAAGCCTGACATCGTGCCTCAAATGAAACAAACATGGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
251543 GACTTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCTTCACATTAGGATAAAGGATAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * * *
251608 ACGATTTTCTTTTGCGTGGAAATCTTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCTT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * * * * ** *
251673 TAAATGAGACAAGCATCGATTCTTGAAACAATCTCCATTCTGCTCAATATTGGGAACCAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* * * *
251738 CATTCTCTTCATTAGGATACTTGACATTGATGCTTTGATGACGCAAAAATAGCTTTTCTTACCAC
325 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCAC
* * * * *
251803 CATTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCTT
390 CGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCT
* *
251868 ATTCCTTTCAAGATTTGGCACC
455 ATTCTTTTCAAGATTAGGCACC
* * * * * ** *
251890 ATAAAACATAGTCTTCTCAAAAAGATACATGATATTAATGCTATGATTTCGTAGGAATA-GCTTT
1 AT-AAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAA-AGGCTTT
* * * ** *
251954 TTTCCCACCAATTTTTGTGAAGTCTAACTTCGTGCCTCAATTGAGACAATTATGGATTCTAGTAT
64 TTTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
*
252019 TGGA-CTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTTCACATTAGGATAAAGGATAA
129 T-GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAA
* * * *
252083 TGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCATTGTTTGCCTTAAAATCAAAGTTCATCC
193 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
* * * * *
252148 CCTAAATAACACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAA
* *
252213 CACATTCCCTTCATTAGGATACATGACATT-ATTGCTTTGTTGACACAAAAAAAGCTTTTCTTAC
323 CACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTAC
** *
252277 CTTCGTTGTTGATAGAATCAAAATTTGTCTCTTAAATAA-A-AGAAC-TAGAATAGTCATACTAA
387 CACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACA-AACAT-GAATAGTCATACTAA
* * **
252339 TCCCTGTTCTTTTCAGGGGTAGGCACC
450 TCCCTATTCTTTTCAAGATTAGGCACC
* * * * * *
252366 ATAAACGTAGTCTTCTC------ATACACGATCTTGATGCTTTGGCTTTGA-AAGAAATGCTTTC
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTT
* * * * * ** *
252424 TCCCCCCCAATTTTTGCAAAGTCTCACTTCGTGCTTCAAATGAGACAAATTTTGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
252489 GACCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTTCACATTAGGATAAATGATAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* *
252554 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATGAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* ** *
252619 TAAAAAAGACAAGCATCGATTCTTATAATAGT-TCCCATTGTTTTCAAGATTGGGAACCAAAAAC
260 TAAATAAGACAAGCATCGATTCTCGTAATAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAAC
* * *
252683 ACATTCCCTTCTTTAGGATACATGACACT-ATTGCTTTGGTGACGTAAAAAAAGCTTTTCTTACC
324 ACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTACC
* * *
252747 ACCGTTTTTGATAGAATCAAAATTTATCTCGTAAATAAGAGAAAC-TAGAATAGTCATACTAATC
388 ACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAATAGTCATACTAATC
* * *
252811 CCTGTTCTTTTCAGGATTAGGCACT
452 CCTATTCTTTTCAAGATTAGGCACC
** * * * * *
252836 ATAAATGTAGTCTTCTCATAAGGATACACGATACTGATGTTTTGGTTTTGA-AAGAAAGGCTTTC
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTT
* * * * * *
252900 TTCCCCCCAATTTTTG-AAACGTC-CAATTGTGTGCCTCAAACGAGACAAACATTGATTCTAGTA
65 TTCCCACCAATTTTTGTAAA-GTCTGACTT-CGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * *** *
252963 ATGATCTTCTTTCATTTTGTGATTAGGCACTATAAACTTC-TTCTCCTCATTAGGATAAATTTTC
128 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAAC-ACATTCTTCACATTAGGATAAAGGATA
* ** * * * *
253027 TTGATGGGTTTCTTTTTCGTGGAAATCTTTTCTTTGCCCTATTAACCTTAAAATCAAAGTTCATC
192 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
* * * *
253092 CCTTAAATAAGGA-AAGCATCGAGTCTCGCAATAGTCTCCATTCTTTTCTAGATTGGGAGCCAAA
257 CCTTAAATAA-GACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * *
253156 AACACATTTCCTTCATTAGGATACATGACAGTAATGCTATGGTGACGCAAAAAATGTTTTTCTTA
321 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTA
* * * * * * * *
253221 CCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACACACATAAAGAGTCCTAGTAAT
386 CCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
*
253286 CCCAATT-TTTTCCAAGATTAGGCACC
451 CCCTATTCTTTT-CAAGATTAGGCACC
*
253312 ATAAACATAGTCTTCTAATAAGGATACACT-ATATTGATGCTTTGGTTTCACAAGAAAGGC-TTT
1 ATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
*
253375 TTCCCACCAATTTTTGTAAAGTCTGACTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
253440 GACCTTCATTCATTTTGTGATTAGGCACGATAAACACAATCTTCACATTAGGATAAAGGATAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * *
253505 ACGATTTTCTTTTGCATGGAAATCTTTTGTTTGCCTTATTTACCTAAAAATCAAAGTTTATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * * * * *
253570 CAAA-AGAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCAAGAATGGAAACCAAAAAC
260 TAAATA-AGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
*
253634 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCA
* * * *
253699 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAGTCAAACTAACCCC
389 CCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* *
253764 TATTCCTTTCAAGATTTGGCACC
454 TATTCTTTTCAAGATTAGGCACC
* * * *
253787 ATAAAACATAGTTTTCTCATAAGAATACATGATATTGATACTTTGGTTTCACAAGAAAAGCTTTT
1 AT-AAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* * * * *
253852 TTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTTAATTGAGACAAATATGGATTCTAGT-AT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
253916 CGAACTTCATTCTTTTTCTGATTAGGCACTTTAAACACATTCTTCACATTAGGATAAAGGATAAT
130 -GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAAT
* * * * * * *
253981 TATGATTTTCTTTTGCACGAAAATATTTCCTTTGCCTTATTTACCTTAAAATCAAAATTCAACCC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
* * * * *
254046 TTAAATAAGGCAAACATCGATTCTCATAATTGTCTCCATTCTTTTCAAAATTGGGAACCAAATAA
259 TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAA-AA
* * * *
254111 -ACATTCCCTTTATTAGCATACATGACACT-ATTGCTTTGGTGACGCAAAAAAAACTTTTCTTAC
323 CACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGACGCAAAAAAAGCTTTTCTTAC
**
254174 CACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGAGTAAC-TAGAATAGTCATACTAAT
387 CACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAATAGTCATACTAAT
* *
254238 CCTTATTCTTTTCACGATTAGGCACC
451 CCCTATTCTTTTCAAGATTAGGCACC
* * * * * *
254264 ATAAACGTAGTCTTTTCATAGGGATACACGATATTGATGCTTTGGTTTTGA-AACAAAGGCTTTT
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTT
* * ** * * * * *
254328 TTCCCCCCAATTTTTGCAAAGTCCAACTGCGTACCTTAAATAAGACAAACATAGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
254393 GACCTTCATTCATTTTGTGATTGGGCATTATAAACCCATTTTTCACATTAGGATAAAGGATAATG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * *
254458 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTTTTTACCTTAAAATCAAGGTTCTTCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* *
254523 TAAATAAGACAAGCATCGATTCTTGTAATAGT-TCCCATTCTTTTCAAGATTGGAAACCAAAAAC
260 TAAATAAGACAAGCATCGATTCTCGTAATAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAAC
* * * *
254587 ACATTCCCATCATTAGGATACAAGAAATTCTTGCTTTGGTGACTTTTGGTGACGCAAAAAAAAGC
324 ACATTCCCTTCATTAGGATACATG--A------CATTGATG-C-TTTGGTGACGC-AAAAAAAGC
* * * *
254652 TTTT-TTGACCACCATTTTTGATAGATTCAAAATTTGTCTCTCAAATAAGAGAAAC-TAGAATCA
378 TTTTCTT-ACCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAAT-A
* * * *
254715 -TCATACTAATCCTTGTTCTTTTTAGGATTAGG----
440 GTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
* ** * *
254747 -----C--AGTCTTCTCATAAAGATACGCGATATTGATCCTTTGGTTTTGA-AAGAAAGGCTTTC
1 ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTT-
* * * *
254804 TTTCTC-CCAATCTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGAATTCTAGTA
64 TTTCCCACCAAT-TTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * *
254868 ATGACTTTCATTCATTTTGTGATTAGGCATTATAAACACATTTTTCACATTAAGATAAA-GAGTA
128 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGA-TA
254932 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
192 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
* * * * * *
254997 CCTTAAATAAGGCAAGCATCGAGTCTCGTAATAGTCTTCATTTTTTTTCTAGAATGGGAA-CAAA
257 CCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA-TTCTTTTCAAGATTGGGAACCAAA
* * * *
255061 AATCACATTTCCTTCATTAGGATACATGACATTAATGCTATGGTGACGCAAAAAATGCTTTTCTT
321 AA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTT
* * *
255126 ACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAA
385 ACCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * *
255191 TCCCAATTTTTTTTGAAGATTAGGCACC
450 TCCCTA-TTCTTTTCAAGATTAGGCACC
* *
255219 ATAAACATAGTCTTCTAATAAAGATACACT-ATATTGATGCTTTGGTTTCACAAGAAAGGC-TTT
1 ATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* * * * *
255282 TTCCCACTAATTTTTGCAAAGCCTGACATCGTGCCTCAAATGAAACAAACATGGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
255347 GACTTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCTTCACATTAGGATAAAG
130 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
255405 TGATGACAAC
Statistics
Matches: 8686, Mismatches: 1221, Indels: 465
0.84 0.12 0.04
Matches are distributed among these distances:
461 1 0.00
462 63 0.01
463 136 0.02
464 184 0.02
465 58 0.01
466 211 0.02
467 193 0.02
468 48 0.01
469 431 0.05
470 222 0.03
471 581 0.07
472 66 0.01
473 195 0.02
474 903 0.10
475 1275 0.15
476 1914 0.22
477 1836 0.21
478 178 0.02
479 81 0.01
484 4 0.00
485 1 0.00
486 13 0.00
487 91 0.01
488 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
ATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
TCCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT
AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACC
GTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTA
TTCTTTTCAAGATTAGGCACC
Done.