Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2351
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 521823
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
File 4 of 4
Found at i:468449 original size:67 final size:66
Alignment explanation
Indices: 468299--468495 Score: 283
Period size: 67 Copynumber: 2.9 Consensus size: 66
468289 TCCTTTTTAT
*
468299 CCATCATTCCATGCCTTCATTTTT-TATTCCATGCCCATCATTCTATGCCTTCATTTTTTTTATT
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATG---T--TTTTTTTTATT
*
468363 CCATGC
61 TCATGC
*
468369 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATCCCATGTGTTTTTTTTATTTCAT
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGT-TTTTTTTTATTTCAT
468434 GC
65 GC
*
468436 CCGTCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCA--TTTTTTTTTATTTC
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTTTTTTTTTATTTC
468496 TTGATTTTCA
Statistics
Matches: 120, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
64 13 0.11
65 1 0.01
67 60 0.50
68 1 0.01
70 24 0.20
71 21 0.17
ACGTcount: A:0.17, C:0.29, G:0.06, T:0.48
Consensus pattern (66 bp):
CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTTTTTTTTTATTTCATG
C
Found at i:469164 original size:40 final size:41
Alignment explanation
Indices: 469107--469238 Score: 144
Period size: 42 Copynumber: 3.2 Consensus size: 41
469097 GTCCCACTTT
* *
469107 TTGAGGACAAAGAAAAAGGGAATGAAATAG-GTCCTGCTCC
1 TTGAGGACAAAGGAAAAGGGAAAGAAATAGTGTCCTGCTCC
* * *
469147 TTGAGGACAAAGGAAAAGAAGAAAAGGAA-AGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAG--GGAAAGAAATAGTGTCCTGCTCC
* *
469189 TTGAGGACAAAGTGAAAAAGGGAAAGAAGT-GTGTCCTGCTCT
1 TTGAGGACAAAG-G-AAAAGGGAAAGAAATAGTGTCCTGCTCC
469231 TTGAGGAC
1 TTGAGGAC
469239 TAAAAAGTGC
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
40 17 0.22
41 2 0.03
42 51 0.67
43 1 0.01
44 5 0.07
ACGTcount: A:0.39, C:0.13, G:0.30, T:0.19
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAGGGAAAGAAATAGTGTCCTGCTCC
Found at i:469316 original size:61 final size:60
Alignment explanation
Indices: 469221--469394 Score: 217
Period size: 61 Copynumber: 2.9 Consensus size: 60
469211 AAAGAAGTGT
* * * *
469221 GTCCTGCTCTTTGAGGACTAAAAAGTGCTACCAACTCGTGTGGTCTTTG-AAAAGAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTAGTGTGGGCTTTGAAAAAG-AAA-GC
* *
469282 GTCCTGCTCTTTGAGGACTG-GAAGATGCCACCAACTAGTGTGGGATTTGCAAAAAGAAAGC
1 GTCCTGCTCTTTGAGGACTGAAAAG-TGCCACCAACTAGTGTGGGCTTTG-AAAAAGAAAGC
* * *
469343 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAA
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTAGTGTGGGCTTTGAAA
469395 TGCGTCATGC
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
60 6 0.06
61 81 0.83
62 6 0.06
63 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (60 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTAGTGTGGGCTTTGAAAAAGAAAGC
Found at i:469507 original size:216 final size:210
Alignment explanation
Indices: 469225--469625 Score: 547
Period size: 216 Copynumber: 1.9 Consensus size: 210
469215 AAGTGTGTCC
* * * *
469225 TGCTCTTTGAGGACTAAAAAGTGCTACCAACTCGTGTGGTCTTTGAAAAGAAAAGGCGTCCTGCT
1 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
*
469290 CTTTGAGGACTG-GAAGATGCCACCAACTAGTGTGGGATTTGCAAAAAGAAAGCATCCTGCTCTT
66 CTTTGAGGACTGAAAAG-TGCCACCAACTAGTGTGGGATTTG---AAAG---GCATCCTGCTCTT
* * *
469354 TGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCCTTGAAATGCGTCATGCTCTTTGAGGACAA
124 TGAGGACTGGAAAA-TGCCACCAACTAGTGTGGGCCTTAAAAGGCGTCATGCTCTTTGAGGACAA
469418 AAAGGCGAAAGGAGAGAACGTCT
188 AAAGGCGAAAGGAGAGAACGTCT
* * *
469441 TGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-ACAAGAAGAAAGCATCCTGC
1 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAA-AAAGCATCCTGC
* * * *
469505 TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTTTTTGAGGA
65 TCTTTGAGGACTGAAAAGTGCCACCAACTAGTGTGGGATTTGAAAGGCATCCTGCTCTTTGAGGA
* *
469570 CTGGAAAATGCCACCAACTAGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAC
130 CTGGAAAATGCCACCAACTAGTGTGGGCCTTAAAAGGCGTCATGCTCTTTGAGGAC
469626 TGAATGGTGC
Statistics
Matches: 165, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
210 62 0.38
211 5 0.03
213 4 0.02
215 6 0.04
216 85 0.52
217 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (210 bp):
TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
CTTTGAGGACTGAAAAGTGCCACCAACTAGTGTGGGATTTGAAAGGCATCCTGCTCTTTGAGGAC
TGGAAAATGCCACCAACTAGTGTGGGCCTTAAAAGGCGTCATGCTCTTTGAGGACAAAAAGGCGA
AAGGAGAGAACGTCT
Found at i:469536 original size:61 final size:59
Alignment explanation
Indices: 469436--469803 Score: 426
Period size: 61 Copynumber: 6.3 Consensus size: 59
469426 AAGGAGAGAA
* *
469436 CGTCTTGCTCTTTGAGGACT-AGAAAGTGCCACCAACTTGTGTGGGCTTTACAAGAAGAAAG
1 CGTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTA-AAGAA-AAGG
*
469497 CATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT---G-AAAGG
1 CGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGG
* *
469552 CGTCCTGCTTTTTGAGGACTGGAAAA-TGCCACCAACTAGTGTGGGCTTT----AAAAGG
1 CGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGG
** *
469607 CGTCCTGCTCTTTGAGGACTGAATGGTGCCAACAACTTGTGTGGGCTTTGAAATGGAAAAGG
1 CGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--GAAAAGG
* *
469669 CATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGG
1 CGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--GAAAAGG
* *
469730 CGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGAGCTTT---G-AAAGG
1 CGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGG
469784 CGTCCTGCTCTTTGAGGACT
1 CGTCCTGCTCTTTGAGGACT
469804 AAAGGGTGAG
Statistics
Matches: 280, Mismatches: 16, Indels: 29
0.86 0.05 0.09
Matches are distributed among these distances:
54 28 0.10
55 89 0.32
56 6 0.02
57 1 0.00
61 129 0.46
62 27 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (59 bp):
CGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGG
Found at i:469568 original size:155 final size:161
Alignment explanation
Indices: 469275--469720 Score: 507
Period size: 155 Copynumber: 2.7 Consensus size: 161
469265 CTTTGAAAAG
* * * * *
469275 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAGATGCCACCAACTAGTGTGGGATTTGCAAAAAGAA
1 AAAA-GCGTCCTGCTCTTTGAGGACTGAAAG-TGCCACCAACTTGTGTGGGCTTTACAAGAAGAA
* *
469340 AGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAATGCGTCATGC
64 AGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCATGC
* *
469405 TCTTTGAGGAC-AAAAAG-GCGAA-A-G-GAG-
129 TCTTTGAGGACGAAAAAGCACCAACAGGTGAGT
* *
469432 AGAA-CGTCTTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTACAAGAAGAAA
1 AAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTACAAGAAGAAA
*
469496 GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
65 GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCATGCT
* * *
469561 TTTTGAGGACTGGAAAATGCCACCAACTAGTGTGGGCTTT
130 CTTTGAGGAC--GAAAAAG-CACCAAC-AG-GTGAG---T
* *
469601 AAAAGGCGTCCTGCTCTTTGAGGACTGAATGGTGCCAACAACTTGTGTGGGCTTTGA-AATGGAA
1 AAAA-GCGTCCTGCTCTTTGAGGACTGAA-AGTGCCACCAACTTGTGTGGGCTTT-ACAA--GAA
* *
469665 -AAGGCATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAA
61 GAAAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAA
469721 TGGAAAAGGC
Statistics
Matches: 247, Mismatches: 21, Indels: 28
0.83 0.07 0.09
Matches are distributed among these distances:
155 120 0.49
156 4 0.02
157 3 0.01
158 5 0.02
160 3 0.01
162 1 0.00
164 1 0.00
165 2 0.01
169 3 0.01
170 3 0.01
171 74 0.30
172 25 0.10
173 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (161 bp):
AAAAGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTACAAGAAGAAAG
CATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCATGCTC
TTTGAGGACGAAAAAGCACCAACAGGTGAGT
Found at i:469582 original size:55 final size:54
Alignment explanation
Indices: 469499--469808 Score: 377
Period size: 55 Copynumber: 5.4 Consensus size: 54
469489 GAAGAAAGCA
*
469499 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* ** * *
469554 TCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTAGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
469609 TCCTGCTCTTTGAGGACTGAATGGTGCCAACAACTTGTGTGGGCTTTGAAATGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAA-GGTGCCACCAACTTGTGTGGGC-TT----T-G-AAAGGCG
469671 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC-TT----T-G-AAAGGCG
*
469732 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
469786 TCCTGCTCTTTGAGGACTAAAGG
1 TCCTGCTCTTTGAGGACTGAAGG
469809 GTGAGAGAAG
Statistics
Matches: 231, Mismatches: 15, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
54 32 0.14
55 85 0.37
56 4 0.02
60 3 0.01
61 80 0.35
62 27 0.12
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:469994 original size:55 final size:55
Alignment explanation
Indices: 469824--470233 Score: 538
Period size: 55 Copynumber: 7.3 Consensus size: 55
469814 AGAAGAGAGT
*
469824 GTCCTGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGC
1 GTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAAG---GC
** * *
469884 ACCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCATTAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * *
469938 GTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAACGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
**
469993 GTCCTGCTCTTTGAGGACAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG---GC
* * *
470052 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTCTGTGGGCTTTAAAAGGA
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
*
470107 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * *
470161 GTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAGAGGT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
470216 GTCCTGCTCTTTGAGGAC
1 GTCCTGCTCTTTGAGGAC
470234 AAAAAGGCGA
Statistics
Matches: 312, Mismatches: 31, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
54 69 0.22
55 143 0.46
56 3 0.01
57 5 0.02
58 5 0.02
59 70 0.22
60 17 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
Found at i:470057 original size:114 final size:109
Alignment explanation
Indices: 469824--470240 Score: 541
Period size: 114 Copynumber: 3.7 Consensus size: 109
469814 AGAAGAGAGT
* **
469824 GTCCTGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGCACCC
1 GTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAAG---GCGTCC
**
469888 TGCTCTTTGAGGAC-TGAAGGTGCCACCAACTTGTGTGGGCATTAAAAGGC
60 TGCTCTTTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGC
* * * *
469938 GTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAACGGCGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
*
470003 TTGAGGACAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGC
66 TTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGC-TT-AAAAG---GC
* * *
470052 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTCTGTGGGCTTTAAAAGGAGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
**
470117 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGC
66 TTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGC
* * * *
470161 GTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAGAGGTGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
470226 TTGAGGACAAAAAGG
66 TTGAGGACAAAAAGG
470241 CGAAAGGAGA
Statistics
Matches: 268, Mismatches: 29, Indels: 17
0.85 0.09 0.05
Matches are distributed among these distances:
109 92 0.34
110 25 0.09
111 5 0.02
112 8 0.03
113 2 0.01
114 135 0.50
115 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (109 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
TTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGC
Found at i:470104 original size:169 final size:168
Alignment explanation
Indices: 469824--470636 Score: 729
Period size: 169 Copynumber: 5.0 Consensus size: 168
469814 AGAAGAGAGT
** *
469824 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGCACCCT
1 GTCCTGCTCTTTGAGGAC-AAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAAGAAAGCATCCT
* * *
469889 GCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCATTAAAAGGCGTCCTGCTCTTTGAA
64 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
* *
469953 GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAACGGC
129 GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
469993 GTCCTGCTCTTTGAGGACAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATCCTG
1 GTCCTGCTCTTTGAGGAC-AAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATCCTG
* *
470058 CTCTTTGAGGACTGAAAAGTGCCACCAACTTCTGTGGGCTTTAAAAGGAGTCCTGCTCTTTGAGG
65 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
470123 ACTGAAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGC
130 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * **
470161 GTCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACCTGTGTGGGCTTT---AAG-AGGTGTCCT
1 GTCCTGCTCTTTGAGGAC--AAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATCCT
* * * *
470221 GCTCTTTGAGGAC-AAAAAG-GCGA--AA-----G-GAG----AGAA--CGTCCTGCTCTTTGAG
64 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
*
470270 GACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAATC
129 GACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-G----C
* * ** * * * *
470316 GTCCTACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTAGGC-TTAAAAGGAGAAGGCGTCCT
1 GTCCTGCTCTTTGAGGACAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA--AGAAAGCATCCT
*
470380 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
64 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
* * * * *
470445 GAC-AAAAAG-GCGA--AA-----G-GAG----AGAA--C
129 GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* ** *
470469 GTCCTTCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCC
1 GTCCTGCTCTTTGAGGAC-AAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAA-AGAAAGCATCC
* * * * * *
470534 TACTTTTTGAAGACTG-AAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCATCCTGCTC
63 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT--TA--A-AAGGCGTCCTGCTC
* *
470598 TTTGAAGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
123 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
470637 GAAGAAAGGT
Statistics
Matches: 530, Mismatches: 58, Indels: 108
0.76 0.08 0.16
Matches are distributed among these distances:
148 40 0.08
149 5 0.01
150 8 0.02
151 1 0.00
153 21 0.04
154 67 0.13
155 44 0.08
156 5 0.01
158 3 0.01
159 42 0.08
160 15 0.03
161 6 0.01
162 3 0.01
163 9 0.02
164 19 0.04
165 5 0.01
166 1 0.00
168 79 0.15
169 128 0.24
171 2 0.00
173 7 0.01
174 1 0.00
175 19 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (168 bp):
GTCCTGCTCTTTGAGGACAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATCCTGC
TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
CTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
Found at i:470388 original size:59 final size:58
Alignment explanation
Indices: 470254--470447 Score: 236
Period size: 60 Copynumber: 3.3 Consensus size: 58
470244 AAGGAGAGAA
**
470254 CGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAT
1 CGTCCTGCTCTTTGAGGACT--GAAGTGCCACCAACTTGTGTGGGC-TTAAAAAGAGAAGG
* * * *
470315 CGTCCTACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTAGGCTTAAAAGGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGAA-GTGCCACCAACTTGTGTGGGCTTAAAAAGAGAAGG
*
470374 CGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT----TGA-AAGG
1 CGTCCTGCTCTTTGAGGACTG--AAGTGCCACCAACTTGTGTGGGCTTAAAAAGAGAAGG
470429 CGTCCTGCTCTTTGAGGAC
1 CGTCCTGCTCTTTGAGGAC
470448 AAAAAGGCGA
Statistics
Matches: 120, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
55 23 0.19
56 2 0.02
59 33 0.28
60 42 0.35
61 20 0.17
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (58 bp):
CGTCCTGCTCTTTGAGGACTGAAGTGCCACCAACTTGTGTGGGCTTAAAAAGAGAAGG
Found at i:470417 original size:214 final size:214
Alignment explanation
Indices: 470053--470641 Score: 936
Period size: 214 Copynumber: 2.8 Consensus size: 214
470043 AAAGAAAGCA
* *
470053 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTCTGTGGGCTTT-AAAAG-G--A-GTCCT
1 TCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAACGTCCT
* *
470112 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT---A--A-AAGGCGTCCTGCTCT
65 ACTTTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCT
* * *
470171 TTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACA
129 TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTGCTCTTTGAGGACA
470235 AAAAGGCGAAAGGAGAGAACG
194 AAAAGGCGAAAGGAGAGAACG
470256 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAATCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAA-CGTCCT
*
470321 ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTAGGCTTAAAAGGAGAAGGCGTCCTGCTCTT
65 ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCTT
470386 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTCCTGCTCTTTGAGGACAA
130 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTGCTCTTTGAGGACAA
470450 AAAGGCGAAAGGAGAGAACG
195 AAAGGCGAAAGGAGAGAACG
*
470470 TCCTTCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAA-CGTCCT
* *
470535 ACTTTTTGAAGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCATCCTGCTCTT
65 ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCTT
*
470600 TGAAGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGA
130 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGA
470642 AAGGTTGCTT
Statistics
Matches: 357, Mismatches: 14, Indels: 18
0.92 0.04 0.05
Matches are distributed among these distances:
203 43 0.12
204 6 0.02
205 1 0.00
207 1 0.00
208 25 0.07
209 18 0.05
211 1 0.00
213 1 0.00
214 258 0.72
215 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (214 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAACGTCCTA
CTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCTTT
GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTGCTCTTTGAGGACAAA
AAGGCGAAAGGAGAGAACG
Found at i:470563 original size:60 final size:61
Alignment explanation
Indices: 470491--470636 Score: 224
Period size: 60 Copynumber: 2.4 Consensus size: 61
470481 GAGGACTAGG
* *
470491 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCCTACTTTTTGAAGACTG-A
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAAGACTGAA
* * * *
470551 AGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAGAAGGCATCCTGCTCTTTGAAGACTGAA
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAAGACTGAA
470611 AAGTGCCACCAACTTGTGTGGGCTTT
1 AAGTGCCACCAACTTGTGTGGGCTTT
470637 GAAGAAAGGT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
59 30 0.39
60 45 0.58
61 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (61 bp):
AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCTACTCTTTGAAGACTGAA
Found at i:470607 original size:59 final size:58
Alignment explanation
Indices: 470470--470635 Score: 215
Period size: 60 Copynumber: 2.8 Consensus size: 58
470460 GGAGAGAACG
* * *
470470 TCCTTCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCG
1 TCCTACTCTTTGAAGACT--GAAGTGCCACCAACTTGTGTGGGC-TTAAAAAGAGAAAGCA
* * *
470531 TCCTACTTTTTGAAGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCA
1 TCCTACTCTTTGAAGACTGAA-GTGCCACCAACTTGTGTGGGCTTAAAAAGAGAAAGCA
*
470590 TCCTGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTGGGCTT
1 TCCTACTCTTTGAAGACTG--AAGTGCCACCAACTTGTGTGGGCTT
470636 TGAAGAAAGG
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
59 33 0.35
60 44 0.47
61 17 0.18
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (58 bp):
TCCTACTCTTTGAAGACTGAAGTGCCACCAACTTGTGTGGGCTTAAAAAGAGAAAGCA
Found at i:476799 original size:51 final size:50
Alignment explanation
Indices: 476677--476812 Score: 148
Period size: 51 Copynumber: 2.6 Consensus size: 50
476667 AAAATTAGTA
* * *
476677 TTTTAGAGATAACAACGGGGCTAGAGTATCCCCGATTATGGAAAAACGGTG
1 TTTTAGAAATAA-AACGGGGTTAGAGTATCCCCGATTATGGAAAAACGATG
* * *
476728 TTCTAAAAAATAAAATCGGGGTTAGAGTATCCCCGATTAT-GAAAAATTGATG
1 TT-TTAGAAATAAAA-CGGGGTTAGAGTATCCCCGATTATGGAAAAA-CGATG
* *
476780 TTTTAGAAATAAAACCGGGGTTGGAGTACCCCC
1 TTTTAGAAATAAAA-CGGGGTTAGAGTATCCCC
476813 TCGAAAATAA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
51 36 0.51
52 35 0.49
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (50 bp):
TTTTAGAAATAAAACGGGGTTAGAGTATCCCCGATTATGGAAAAACGATG
Found at i:476835 original size:79 final size:79
Alignment explanation
Indices: 476744--477049 Score: 513
Period size: 79 Copynumber: 3.9 Consensus size: 79
476734 AAAATAAAAT
* *
476744 CGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
476809 CCCCTCGAAAATAA
66 CCCCTCGAAAATAA
*
476823 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
* *
476888 CCCTTCGGAAATAA
66 CCCCTCGAAAATAA
* * * *
476902 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
476967 CCCCTCAAAAATAA
66 CCCCTCGAAAATAA
*
476981 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
477046 CCCC
66 CCCC
477050 GATTATGAAA
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 209 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGAAAATAA
Found at i:477053 original size:209 final size:209
Alignment explanation
Indices: 476823--477258 Score: 836
Period size: 209 Copynumber: 2.1 Consensus size: 209
476813 TCGAAAATAA
*
476823 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTAGAGTAT
*
476888 CCCTTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
66 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
476953 CGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
131 CGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
477018 TTTAGAGATAAAAC
196 TTTAGAGATAAAAC
477032 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTAGAGTAT
477097 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
66 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
* *
477162 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
131 CGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
477227 TTTAGAGATAAAAC
196 TTTAGAGATAAAAC
477241 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
477259 TCAGAAATAA
Statistics
Matches: 223, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
209 223 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (209 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTAGAGTAT
CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
CGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
TTTAGAGATAAAAC
Found at i:477057 original size:51 final size:51
Alignment explanation
Indices: 476981--477100 Score: 213
Period size: 51 Copynumber: 2.4 Consensus size: 51
476971 TCAAAAATAA
*
476981 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAAC
*
477032 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAAC
*
477083 CGGGGTTAGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
477101 TCGGAAATAA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAAC
Found at i:477059 original size:130 final size:130
Alignment explanation
Indices: 476902--477179 Score: 448
Period size: 130 Copynumber: 2.1 Consensus size: 130
476892 TCGGAAATAA
* *
476902 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTAGAGTAT
* * *
476967 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
66 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
** * *
477032 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTAGAGTAT
** *
477097 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAAC
66 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
477162 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
477180 TCGAAAATAA
Statistics
Matches: 136, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 136 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (130 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTAGAGTAT
CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
Found at i:477117 original size:79 final size:79
Alignment explanation
Indices: 477032--477618 Score: 967
Period size: 79 Copynumber: 7.4 Consensus size: 79
477022 GAGATAAAAC
* *
477032 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
477097 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * *
477111 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
477176 CCCCTCGAAAATAA
66 CCCCTCGGAAATAA
*
477190 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
477255 CCCCTCAGAAATAA
66 CCCCTCGGAAATAA
*
477269 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
477334 CCCCTCGAAAATAA
66 CCCCTCGGAAATAA
*
477348 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
477413 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * * * *
477427 CGGGGTTAGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAAGAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
477492 CCCCTCGAAAATAA
66 CCCCTCGGAAATAA
* * * *
477506 CGGGGTTGGAGTATCGCCAATTATGAAAAATTGATGTTTTAGAGATAAAACCGGAGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
477571 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* *
477585 CGGGATTGGAGTATCCCCGATTGTGAAAAATTGA
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGA
477619 GAAACTTAAC
Statistics
Matches: 468, Mismatches: 40, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 468 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGGAAATAA
Found at i:478895 original size:35 final size:35
Alignment explanation
Indices: 478830--479013 Score: 279
Period size: 35 Copynumber: 5.4 Consensus size: 35
478820 TCCTTTTTAT
478830 CCATCATTCCATGCCTTCA-TTTTTTATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
*
478864 CCATCATTCTATGCCTTCATTTTTTTATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
*
478899 CCATCATTCCATGCCTTCATTTTTATATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
* *
478934 CCATCATCCCATG--TGT--TTTTTTTATTTCATGC
1 CCATCATTCCATGCCT-TCATTTTTTTATTCCATGC
*
478966 CCATCATTCCATGCCTTCATTTTTATATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
479001 CCATCATTCCATG
1 CCATCATTCCATG
479014 TTTTTTTTAT
Statistics
Matches: 135, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
32 26 0.19
33 2 0.01
34 20 0.15
35 87 0.64
ACGTcount: A:0.18, C:0.30, G:0.07, T:0.45
Consensus pattern (35 bp):
CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
Found at i:478979 original size:67 final size:67
Alignment explanation
Indices: 478830--479026 Score: 303
Period size: 67 Copynumber: 2.9 Consensus size: 67
478820 TCCTTTTTAT
*
478830 CCATCATTCCATGCCTTCATTTTT-TATTCCATGCCCATCATTCTATGCCT-TCATTTTTTTATT
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATG--TGT--TTTTTTTATT
*
478893 CCATGC
62 TCATGC
*
478899 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATCCCATGTGTTTTTTTTATTTCAT
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTGTTTTTTTTATTTCAT
478964 GC
66 GC
478966 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCA--TGTTTTTTTTATTTC
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTGTTTTTTTTATTTC
479027 TTGATTTTCA
Statistics
Matches: 122, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
65 15 0.12
67 60 0.49
68 1 0.01
69 25 0.20
70 21 0.17
ACGTcount: A:0.18, C:0.29, G:0.06, T:0.47
Consensus pattern (67 bp):
CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTGTTTTTTTTATTTCAT
GC
Found at i:482497 original size:30 final size:30
Alignment explanation
Indices: 482452--482508 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
482442 TAATAGTTAT
*
482452 TTTTAAAAAATAAAAAAATTATTTTTAAAAA
1 TTTTAAAAAAT-AAAAAATTATCTTTAAAAA
*
482483 TTTT-AAAGATAAAAAATTATCTTTAA
1 TTTTAAAAAATAAAAAATTATCTTTAA
482509 TAGTTATCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 15 0.62
30 5 0.21
31 4 0.17
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (30 bp):
TTTTAAAAAATAAAAAATTATCTTTAAAAA
Found at i:482524 original size:15 final size:15
Alignment explanation
Indices: 482504--482535 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
482494 AAAAATTATC
482504 TTTAATAGTTATCCT
1 TTTAATAGTTATCCT
482519 TTTAATAGTTATCCT
1 TTTAATAGTTATCCT
482534 TT
1 TT
482536 AAACTTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (15 bp):
TTTAATAGTTATCCT
Found at i:482536 original size:14 final size:14
Alignment explanation
Indices: 482499--482537 Score: 62
Period size: 15 Copynumber: 2.8 Consensus size: 14
482489 AGATAAAAAA
482499 TTAT-CTTTAATAG
1 TTATCCTTTAATAG
482512 TTATCCTTTTAATAG
1 TTATCC-TTTAATAG
482527 TTATCCTTTAA
1 TTATCCTTTAA
482538 ACTTGTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.17
14 6 0.25
15 14 0.58
ACGTcount: A:0.28, C:0.13, G:0.05, T:0.54
Consensus pattern (14 bp):
TTATCCTTTAATAG
Found at i:482681 original size:16 final size:15
Alignment explanation
Indices: 482660--482693 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
482650 ATTATTTTTT
482660 TATCTTATTCTTAAAA
1 TATCTTATT-TTAAAA
*
482676 TATCTTATTTTATAA
1 TATCTTATTTTAAAA
482691 TAT
1 TAT
482694 AATTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (15 bp):
TATCTTATTTTAAAA
Found at i:484709 original size:20 final size:20
Alignment explanation
Indices: 484684--484808 Score: 142
Period size: 20 Copynumber: 5.8 Consensus size: 20
484674 TTTTCACAAT
484684 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
484704 TTGTATCGATACATTCTGGGTTTTACCCAA
1 TTGTATCGATACA-T-T--G--TT---C-A
*
484734 ATGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
484754 TTATATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
484774 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
484794 TTGTATCGATACATT
1 TTGTATCGATACATT
484809 CAGGCATTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 20
0.79 0.03 0.17
Matches are distributed among these distances:
20 66 0.73
21 2 0.02
22 1 0.01
24 3 0.03
26 3 0.03
28 1 0.01
29 2 0.02
30 13 0.14
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:487183 original size:28 final size:29
Alignment explanation
Indices: 487151--487227 Score: 113
Period size: 28 Copynumber: 2.7 Consensus size: 29
487141 ATTTTTCACA
* *
487151 ATCGGGGATACTCCAACTCTGTTATTT-C
1 ATCGGGGATACTCCAACCCCGTTATTTCC
487179 ATCGGGGATACTCCAACCCCGTTATTTCC
1 ATCGGGGATACTCCAACCCCGTTATTTCC
*
487208 A-AGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
487228 ATTTTATTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 43 0.96
29 2 0.04
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (29 bp):
ATCGGGGATACTCCAACCCCGTTATTTCC
Found at i:487268 original size:79 final size:78
Alignment explanation
Indices: 487185--487489 Score: 314
Period size: 79 Copynumber: 3.9 Consensus size: 78
487175 TTTCATCGGG
* *
487185 GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAATATTGAT
1 GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCGAT
*
487250 TTCTCACAACCGGA
66 TT-TCACAACAGGA
* ** * *
487264 GATACTCCAACCCCGTTATTTTGGC-A-GGGATACTCCAACCCCGGCTTTATTTCTAAAGCTTCG
1 GATACTCCAACCCCGTTA-TTT-CCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCG
**
487327 ATTTTCCACAATTGGA
64 ATTTT-CACAACAGGA
* * *
487343 GATACTCTAACCCCGTTATCTT-CGAGGGGATACTCCAACCCCGATTTTATTT-TCAAAACACCG
1 GATACTCCAACCCCGTTAT-TTCCAAGGGGATACTCCAACCCCGATTTTATTTCT-AAAACATCG
* * *
487406 ATTTTTTATAATCATG-
64 A-TTTTCACAA-CAGGA
* *** *
487422 GATGCTCCAACCTTATTATTTCCAAGGGGATACTCCAACCCCAATTTTATTTCTAAAACATCGAT
1 GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCGAT
487487 TTT
66 TTT
487490 TCATAATTAG
Statistics
Matches: 187, Mismatches: 28, Indels: 23
0.79 0.12 0.10
Matches are distributed among these distances:
77 1 0.01
78 10 0.05
79 165 0.88
80 10 0.05
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (78 bp):
GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCGAT
TTTCACAACAGGA
Found at i:487294 original size:107 final size:107
Alignment explanation
Indices: 487105--487306 Score: 287
Period size: 107 Copynumber: 1.9 Consensus size: 107
487095 TTCATCTCGA
* * * * *
487105 GGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTTCACAATCGGGGATACTCCAACTC
1 GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTCTCACAACCGGAGATACTCCAACCC
* * *
487170 TGTTATTTCATCGGGGATACTCCAACCCCGTTATTTCCAAGG
66 CGTTATTTCAGCAGGGATACTCCAACCCCGTTATTTCCAAGG
***
487212 GGATACTCCAACCCCGATTTTATTTCTAAAATATTGATTTCTCACAACCGGAGATACTCCAACCC
1 GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTCTCACAACCGGAGATACTCCAACCC
**
487277 CGTTATTTTGGCAGGGATACTCCAACCCCG
66 CGTTATTTCAGCAGGGATACTCCAACCCCG
487307 GCTTTATTTC
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
107 82 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (107 bp):
GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTCTCACAACCGGAGATACTCCAACCC
CGTTATTTCAGCAGGGATACTCCAACCCCGTTATTTCCAAGG
Found at i:487430 original size:158 final size:159
Alignment explanation
Indices: 487185--487510 Score: 360
Period size: 158 Copynumber: 2.1 Consensus size: 159
487175 TTTCATCGGG
* **
487185 GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAATATTGAT
1 GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCGAT
* * **
487250 TTCTCACAACCGGAGATACTCCAACCCCGTTATT-TTGGC-A-GGGATACTCCAACCCCGGCTTT
66 TTCTCACAACAGGAGATACTCCAA--CC-TTATTATTGCCAAGGGGATACTCCAACCCCAACTTT
* *
487312 ATTTCTAAAGCTTCGATTTTCCACAATT-GGA
128 ATTTCTAAAACATCGATTTTCCACAATTAGGA
* *
487343 GATACTCTAACCCCGTTATCTT-CGAGGGGATACTCCAACCCCGATTTTATTT-TCAAAACACCG
1 GATACTCCAACCCCGTTAT-TTCCAAGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCG
* * * * * * *
487406 ATTTTTTATAATCATG-GATGCTCCAACCTTATTATTTCCAAGGGGATACTCCAACCCCAATTTT
64 ATTTCTCACAA-CAGGAGATACTCCAACCTTATTATTGCCAAGGGGATACTCCAACCCCAACTTT
* * *
487470 ATTTCTAAAACATCGATTTTTCATAATTAGGG
128 ATTTCTAAAACATCGATTTTCCACAATTAGGA
487502 GATACTCCA
1 GATACTCCA
487511 GCCCTGTTGT
Statistics
Matches: 139, Mismatches: 22, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
155 5 0.04
156 5 0.04
157 2 0.01
158 113 0.81
159 14 0.10
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (159 bp):
GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCGAT
TTCTCACAACAGGAGATACTCCAACCTTATTATTGCCAAGGGGATACTCCAACCCCAACTTTATT
TCTAAAACATCGATTTTCCACAATTAGGA
Found at i:491430 original size:207 final size:207
Alignment explanation
Indices: 491075--491485 Score: 761
Period size: 207 Copynumber: 2.0 Consensus size: 207
491065 AGACAACGCC
*
491075 AGAGGCCCTATCTCTTCTGCCCAAATGCACCCTACCCGCCTGCCGTAATGCCTCCGCAACTAGTC
1 AGAGGCCCTATCTCTTCTGCCCAAATGCACCCTACCCGCCTGCCGCAATGCCTCCGCAACTAGTC
*
491140 TATGCCACAACTTACAACCCAACCTTCACAATTCCACCTGGCCCATCACAGAATCGCCCACCGCC
66 TATGCCACAACTTACAACCCAACCTTCACAATTCCACCAGGCCCATCACAGAATCGCCCACCGCC
*
491205 AAGCTATCAACCACAAGATCGTTGAAACACCACTCAACTAACTAATGGCACGCTAAATAATCGAG
131 AAGCTATCAACCACAAGATCGTCGAAACACCACTCAACTAACTAATGGCACGCTAAATAATCGAG
*
491270 GTGCAAATCAGT
196 GAGCAAATCAGT
*
491282 AGAGG-CCTAATCTCTTCTGCCCAAATGCACCCTACCTGCCTGCCGCAATGCCTCCGCAACTAGT
1 AGAGGCCCT-ATCTCTTCTGCCCAAATGCACCCTACCCGCCTGCCGCAATGCCTCCGCAACTAGT
491346 CTATGCCACAACTTACAACCCAACCTTCACAATTCCACCAGGCCCATCACAGAATCGCCCACCGC
65 CTATGCCACAACTTACAACCCAACCTTCACAATTCCACCAGGCCCATCACAGAATCGCCCACCGC
491411 CAAGCTATCAACCACAAGATCGTCGAAACACCACTCAACTAACTAATGGCACGCTAAATAATCGA
130 CAAGCTATCAACCACAAGATCGTCGAAACACCACTCAACTAACTAATGGCACGCTAAATAATCGA
491476 GGAGCAAATC
195 GGAGCAAATC
491486 GGTAAAAACC
Statistics
Matches: 198, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
206 3 0.02
207 195 0.98
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.18
Consensus pattern (207 bp):
AGAGGCCCTATCTCTTCTGCCCAAATGCACCCTACCCGCCTGCCGCAATGCCTCCGCAACTAGTC
TATGCCACAACTTACAACCCAACCTTCACAATTCCACCAGGCCCATCACAGAATCGCCCACCGCC
AAGCTATCAACCACAAGATCGTCGAAACACCACTCAACTAACTAATGGCACGCTAAATAATCGAG
GAGCAAATCAGT
Found at i:493953 original size:61 final size:59
Alignment explanation
Indices: 493887--494326 Score: 493
Period size: 61 Copynumber: 7.2 Consensus size: 59
493877 TTTAGCCCTT
* *
493887 TTTAGTCCTCAAATAGCAGGATGCTTTTTCTTTTCAAAGCCCACACCAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCTTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCA-CC
* * * ** * * *
493948 TTTAGTCCTCAAAGAGTAGGACGCATTTTCCTTTCGAAGCCCACATAAGTTGGTGGCGCTT
1 TTTAGTCCTCAAAGAGCAGGATGC-TTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-C
* * *
494009 TTCTAGTCCTCAAAGAGCAGGACGTCGTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACA
1 TT-TAGTCCTCAAAGAGCAGGATG-CTTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACC
* ** *
494071 TTCTAGTCCTCAAAGAGCAGGACGCCTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATC
1 TT-TAGTCCTCAAAGAGCAGGATG-CTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC
* * *
494132 TTCTAGTCCTCAAAGAGAAGGATGTTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATCT
1 TT-TAGTCCTCAAAGAGCAGGATGCTTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCA-CC
* * *
494194 TTTAGTCCTCAAAGAGCAGGATGTTTTTTCCTTTTAAAGTCCACACAAGCTGGTGGCACC
1 TTTAGTCCTCAAAGAGCAGGATGCTTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACC
* * * *
494254 TTTAGTCCTCAAAGAGCATGATGTCTTTTCCTTTTAAACCCCACACAAGTTGGTGGCACT
1 TTTAGTCCTCAAAGAGCAGGATG-CTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC
*
494314 TTTCAGTCTTCAA
1 TTT-AGTCCTCAA
494327 GAGGGAGGAC
Statistics
Matches: 327, Mismatches: 43, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
60 56 0.17
61 180 0.55
62 69 0.21
63 22 0.07
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (59 bp):
TTTAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC
Found at i:494452 original size:43 final size:43
Alignment explanation
Indices: 494340--494774 Score: 291
Period size: 43 Copynumber: 10.0 Consensus size: 43
494330 GGAGGACGCC
* * * *
494340 TTTTCCTTTTTTCCTTTTGTCTTCAAAGAGCAAGACGCACTTCA
1 TTTTCCTTTTCTCC-TTTGTCCTCAAAGAGCAGGACGCACTTTA
*
494384 TTTCTTTCTTTTC-CCTTTTGTCCTCAAAGAGCAGGACGCACTTTA
1 -TT-TTCCTTTTCTCC-TTTGTCCTCAAAGAGCAGGACGCACTTTA
* * * *
494429 TTTTCCTTTTCTCCATTATCCTCAAAGAGCAGGATGCACTTCA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTTA
* * * * *
494472 TTTCTTTCTTTTC-CTTTTTGTCCTTAAAAAGCAGGACACACTTTA
1 -TT-TTCCTTTTCTC-CTTTGTCCTCAAAGAGCAGGACGCACTTTA
*
494517 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGA--TACGTTTCA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCAC-TTT-A
* * * *
494560 -TTTCCTTTTTTTTCCTTTGTCCTCAAAGAGTAGGATGCACTTCA
1 TTTTCC--TTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTTA
* * * *
494604 -TTTCCTTCTTTTGCCTTCTAGTTCTCAAAGAGTATGACGCACTTTA
1 TTTTCCTT-TTCT-CCTT-T-GTCCTCAAAGAGCAGGACGCACTTTA
* * * * *
494650 TTCT-CTTTTTTCCTTTGTCCTCAAAAAGCAAGACACA-TTTA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTTA
* * * * * *
494691 ATTTCCTGTT-TCCTTTATCTTCAAA-AGGC-GAGATGCATTTTA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGA-GCAG-GACGCACTTTA
* **
494733 -TTTCCTTTTTTCCTTAATCCTCAAAGAGCAGGACGCCACTTT
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACG-CACTTT
494775 CCTTTTCTTT
Statistics
Matches: 314, Mismatches: 51, Indels: 52
0.75 0.12 0.12
Matches are distributed among these distances:
40 1 0.00
41 35 0.11
42 52 0.17
43 72 0.23
44 50 0.16
45 68 0.22
46 34 0.11
47 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (43 bp):
TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTTA
Found at i:494459 original size:88 final size:85
Alignment explanation
Indices: 494340--494774 Score: 376
Period size: 88 Copynumber: 5.0 Consensus size: 85
494330 GGAGGACGCC
* * * *
494340 TTTTCCTTTTTTCCTTTTGTCTTCAAAGAGCAAGACGCACTTCATTTCTTTCTTTTCCCTTTTGT
1 TTTTCCTTTTCTCC-TTTATCCTCAAAGAGCAAGATGCACTTCATTTCTTT-TTTT-CC-TTTGT
494405 CCTCAAAGAGCAGGACGCACTTTA
62 CCTCAAAGAGCAGGACGCACTTTA
* *
494429 TTTTCCTTTTCTCCATTATCCTCAAAGAGCAGGATGCACTTCATTTCTTTCTTTTCCTTTTTGTC
1 TTTTCCTTTTCTCCTTTATCCTCAAAGAGCAAGATGCACTTCATTTCTTT-TTTTCC--TTTGTC
* * *
494494 CTTAAAAAGCAGGACACACTTTA
63 CTCAAAGAGCAGGACGCACTTTA
* * * **
494517 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGATACGTTTCATTTCCTTTTTTTTCCTTTGTCC
1 TTTTCCTTTTCTCCTTTATCCTCAAAGAGCAAGATGCACTTCATTT-C-TTTTTTTCCTTTGTCC
* * *
494582 TCAAAGAGTAGGATGCACTTCA
64 TCAAAGAGCAGGACGCACTTTA
* * * * * *
494604 -TTTCCTTCTTTTGCCTTCTAGTTCTCAAAGAGTATGACGCACTTTA-TTCTCTTTTTTCCTTTG
1 TTTTCCTT-TTCT-CCTT-TA-TCCTCAAAGAGCAAGATGCACTTCATTTCT-TTTTTTCCTTTG
* * *
494667 TCCTCAAAAAGCAAGACACA-TTTA
61 TCCTCAAAGAGCAGGACGCACTTTA
* * * * * * * **
494691 ATTTCCTGTT-TCCTTTATCTTCAAA-AGGCGAGATGCATTTTATTTCCTTTTTTCCTTAATCCT
1 TTTTCCTTTTCTCCTTTATCCTCAAAGA-GCAAGATGCACTTCATTTCTTTTTTTCCTTTGTCCT
494754 CAAAGAGCAGGACGCCACTTT
65 CAAAGAGCAGGACG-CACTTT
494775 CCTTTTCTTT
Statistics
Matches: 283, Mismatches: 50, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
82 1 0.00
83 41 0.14
84 7 0.02
85 7 0.02
86 8 0.03
87 34 0.12
88 142 0.50
89 23 0.08
90 20 0.07
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (85 bp):
TTTTCCTTTTCTCCTTTATCCTCAAAGAGCAAGATGCACTTCATTTCTTTTTTTCCTTTGTCCTC
AAAGAGCAGGACGCACTTTA
Found at i:494589 original size:132 final size:127
Alignment explanation
Indices: 494341--494747 Score: 364
Period size: 132 Copynumber: 3.1 Consensus size: 127
494331 GAGGACGCCT
*
494341 TTTCCTT-TTTTCC-TTTTGTCTTCAAAGAGCAAGACGCACTTCATTTCTTTCTTTTC-CCTTTT
1 TTTCCTTCTTTTCCTTTTTGTCTT-AAAGAGCAAGACGCACTT--TAT-TTTCTTTTCTCC-TTT
494403 GTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TTTTCTCCATTATCCTCAAAGAGCAGGATGCA
61 GTCCTCAAAGAGCAGGA--CACTTTA-TTTCCTTTTTCTCCATTATCCTCAAAGAGCAGGATGCA
494467 CTTCA
123 CTTCA
* * * *
494472 TTTCTTTCTTTTCCTTTTTGTCCTTAAAAAGCAGGACACACTTTATTTTCCTTTTCTCCTTTGTC
1 TTTCCTTCTTTTCCTTTTTGT-CTTAAAGAGCAAGACGCACTTTATTTT-CTTTTCTCCTTTGTC
* * * * *
494537 CTCAAAGAGCAGGATACGTTTCATTTCCTTTTTTTTCCTTTGTCCTCAAAGAGTAGGATGCACTT
64 CTCAAAGAGCAGGACAC-TTT-ATTTCC-TTTTTCTCCATTATCCTCAAAGAGCAGGATGCACTT
494602 CA
126 CA
* * * * * * *
494604 TTTCCTTCTTTTGCCTTCTAGTTCTCAAAGAGTATGACGCACTTTATTCTCTTTTTTCCTTTGTC
1 TTTCCTTCTTTT-CCTTTTTG-TCTTAAAGAGCAAGACGCACTTTATTTTCTTTTCTCCTTTGTC
* * * * * *
494669 CTCAAAAAGCAAGACACATTTAATTTCC-TGTT-TCCTTTATCTTCAAA-AGGC-GAGATGCATT
64 CTCAAAGAGCAGGACAC-TTT-ATTTCCTTTTTCTCCATTATCCTCAAAGA-GCAG-GATGCACT
*
494730 TTA
125 TCA
494733 TTTCCTT-TTTTCCTT
1 TTTCCTTCTTTTCCTT
494748 AATCCTCAAA
Statistics
Matches: 232, Mismatches: 31, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
127 4 0.02
128 6 0.03
129 32 0.14
130 14 0.06
131 35 0.15
132 89 0.38
133 48 0.21
134 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (127 bp):
TTTCCTTCTTTTCCTTTTTGTCTTAAAGAGCAAGACGCACTTTATTTTCTTTTCTCCTTTGTCCT
CAAAGAGCAGGACACTTTATTTCCTTTTTCTCCATTATCCTCAAAGAGCAGGATGCACTTCA
Found at i:497076 original size:28 final size:30
Alignment explanation
Indices: 497044--497118 Score: 115
Period size: 28 Copynumber: 2.7 Consensus size: 30
497034 ATTTTTCACA
497044 ATCGGGGATACTCCAACCCTGTTA-TTTC-
1 ATCGGGGATACTCCAACCCTGTTACTTTCG
497072 ATCGGGGATACTCCAACCC-GTTACTTTCG
1 ATCGGGGATACTCCAACCCTGTTACTTTCG
497101 A--GGGGATACTCCAACCCT
1 ATCGGGGATACTCCAACCCT
497119 AGCTTTATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
27 20 0.45
28 23 0.52
29 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCTGTTACTTTCG
Found at i:497186 original size:106 final size:106
Alignment explanation
Indices: 496996--497302 Score: 302
Period size: 106 Copynumber: 2.9 Consensus size: 106
496986 TTTTCATCTC
* * *
496996 GGGGATACCCCAACCCTAGTCTCATTTCTGAAATACCAATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCTAGTCTCATTTCTAAAATACCAATTTGTCACAATCGGGGATACTCCAAC
** * *
497061 CCTGTTATTTCATCGGGGATACTCCAACCCGTTA-CTTTCGA
66 CCCATTATTTCAGCAGGGATACTCCAACCCGTTATC-TTCGA
* **
497102 GGGGATACTCCAACCCTAG-CTTTATTTCTAAAATATTAATTTGTCACAA-CTGGGGATACTCCA
1 GGGGATACTCCAACCCTAGTC-TCATTTCTAAAATACCAATTTGTCACAATC-GGGGATACTCCA
**
497165 ACCCCATTATTTTGGCAGGGATACTCCAACCCGTTATCTTCGA
64 ACCCCATTATTTCAGCAGGGATACTCCAACCCGTTATCTTCGA
* * * ** * * *
497208 GGGGATACTCCAACCCT-GATTTTATTT-TCAAAACACTGATTT-TCTATAATCAGGGATGCTCC
1 GGGGATACTCCAACCCTAG-TCTCATTTCT-AAAATACCAATTTGTC-ACAATCGGGGATACTCC
** * *
497270 AACCCTGTTATTTCCGAAGGGATACTCCAACCC
63 AACCCCATTATTTCAGCAGGGATACTCCAACCC
497303 CGATTTTATT
Statistics
Matches: 169, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
105 6 0.04
106 161 0.95
107 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (106 bp):
GGGGATACTCCAACCCTAGTCTCATTTCTAAAATACCAATTTGTCACAATCGGGGATACTCCAAC
CCCATTATTTCAGCAGGGATACTCCAACCCGTTATCTTCGA
Found at i:497212 original size:27 final size:28
Alignment explanation
Indices: 497153--497223 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 28
497143 TGTCACAACT
* *
497153 GGGGATACTCCAACCCCATTATTTTGGCA
1 GGGGATACTCCAA-CCCATTATCTTCGCA
*
497182 -GGGATACTCCAACCCGTTATCTTCG-A
1 GGGGATACTCCAACCCATTATCTTCGCA
497208 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
497224 TGATTTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 25 0.66
28 12 0.32
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCATTATCTTCGCA
Found at i:497298 original size:79 final size:79
Alignment explanation
Indices: 497180--497355 Score: 250
Period size: 79 Copynumber: 2.2 Consensus size: 79
497170 ATTATTTTGG
* *
497180 CAGGGATACTCCAACCC-GTTATCTTCGAGGGGATACTCCAACCCTGATTTTATTT-TCAAAACA
1 CAGGGATACTCCAACCCTGTTATCTTCGAAGGGATACTCCAACCCCGATTTTATTTCT-AAAACA
*
497243 CTGATTTTCTATAAT
65 CTGATTTTCCATAAT
* *
497258 CAGGGATGCTCCAACCCTGTTAT-TTCCGAAGGGATACTCCAACCCCGATTTTATTTCTAAAATA
1 CAGGGATACTCCAACCCTGTTATCTT-CGAAGGGATACTCCAACCCCGATTTTATTTCTAAAACA
497322 CTGATTTTCCATAAT
65 CTGATTTTCCATAAT
*
497337 CAGGGGATACTCCAGCCCT
1 CA-GGGATACTCCAACCCT
497356 ATTGTCATCT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
78 18 0.21
79 54 0.62
80 15 0.17
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (79 bp):
CAGGGATACTCCAACCCTGTTATCTTCGAAGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
TGATTTTCCATAAT
Found at i:498619 original size:4 final size:4
Alignment explanation
Indices: 498605--498634 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
498595 TCAATCGATT
498605 TAAA GTAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA -TAAA TAAA TAAA TAAA TAAA TAAA T
498635 GCATCATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:502199 original size:20 final size:20
Alignment explanation
Indices: 502174--502244 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
502164 AGACATAATG
*
502174 TATCGATACATTGCAGAATA
1 TATCGATACATTGCAAAATA
* *
502194 TATCGATACATT-CATACATG
1 TATCGATACATTGCA-AAATA
* *
502214 TATCGATATATTGAAAAATA
1 TATCGATACATTGCAAAATA
502234 TATCGATACAT
1 TATCGATACAT
502245 CTAGGTAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.05
20 38 0.93
21 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (20 bp):
TATCGATACATTGCAAAATA
Found at i:502217 original size:40 final size:39
Alignment explanation
Indices: 502167--502244 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
502157 GATAAAAAGA
* *
502167 CATAATGTATCGATACATTGCAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
*
502206 CATACATGTATCGATATATTGAAAAATATATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
502245 CTAGGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:504684 original size:17 final size:17
Alignment explanation
Indices: 504664--504703 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
504654 ATTATCTTTT
* *
504664 TTTTTTAATTTGTTTGA
1 TTTTATAATTTATTTGA
*
504681 TTTTATATTTTATTTGA
1 TTTTATAATTTATTTGA
504698 TTTTAT
1 TTTTAT
504704 TTTATTCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.72
Consensus pattern (17 bp):
TTTTATAATTTATTTGA
Found at i:504691 original size:22 final size:22
Alignment explanation
Indices: 504666--504708 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
504656 TATCTTTTTT
504666 TTTTAATTTG-TTTGATTTTATA
1 TTTT-ATTTGATTTGATTTTATA
*
504688 TTTTATTTGATTTTATTTTAT
1 TTTTATTTGATTTGATTTTAT
504709 TCTCATTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (22 bp):
TTTTATTTGATTTGATTTTATA
Found at i:509335 original size:36 final size:36
Alignment explanation
Indices: 509282--509355 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
509272 TAAGAAGAAA
*
509282 GTCCGTGGAGCAGTATGCGATACTCTATATGTCCAC
1 GTCCGTGGAACAGTATGCGATACTCTATATGTCCAC
*
509318 GTCCGTGGAACATTATGCGATACTCTATATGTCCAC
1 GTCCGTGGAACAGTATGCGATACTCTATATGTCCAC
509354 GT
1 GT
509356 TTCTAGAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (36 bp):
GTCCGTGGAACAGTATGCGATACTCTATATGTCCAC
Found at i:510625 original size:2 final size:2
Alignment explanation
Indices: 510618--510654 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
510608 TGTTCCAATT
510618 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
510655 CAAAATACCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:517646 original size:24 final size:23
Alignment explanation
Indices: 517615--517665 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
517605 TTTTTTTTGT
517615 TTAA-ATTT-AAATTTAATTTTAA
1 TTAATATTTCAAATTTAA-TTTAA
*
517637 TATAATATTTCAAATTTGATTTAA
1 T-TAATATTTCAAATTTAATTTAA
517661 TTAAT
1 TTAAT
517666 TTTTTACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 1 0.04
23 7 0.28
24 10 0.40
25 7 0.28
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
TTAATATTTCAAATTTAATTTAA
Found at i:518747 original size:34 final size:33
Alignment explanation
Indices: 518684--518747 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
518674 AGTAAAAATT
*
518684 AATTTAATTTAAATATTATTTAAATAATAAAAA
1 AATTTAATTTAAATATTATATAAATAATAAAAA
*
518717 AATTTATTTATAAATATTAATATAAA-AATAA
1 AATTTAATT-TAAATATT-ATATAAATAATAA
518748 TTTTTTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 8 0.30
34 13 0.48
35 6 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (33 bp):
AATTTAATTTAAATATTATATAAATAATAAAAA
Found at i:519315 original size:15 final size:16
Alignment explanation
Indices: 519295--519327 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
519285 GATTTTTTTA
519295 TTAAAATAAAAAA-TT
1 TTAAAATAAAAAAGTT
519310 TTAAAATAAAAAAGTT
1 TTAAAATAAAAAAGTT
519326 TT
1 TT
519328 TTATTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
TTAAAATAAAAAAGTT
Found at i:519329 original size:18 final size:17
Alignment explanation
Indices: 519290--519330 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 17
519280 AAGGAGATTT
519290 TTTTATTAAAATAAAAAA
1 TTTT-TTAAAATAAAAAA
519308 --TTTTAAAATAAAAAA
1 TTTTTTAAAATAAAAAA
519323 GTTTTTTA
1 -TTTTTTA
519331 TTATAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
15 13 0.65
16 2 0.10
18 5 0.25
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
TTTTTTAAAATAAAAAA
Found at i:519477 original size:130 final size:125
Alignment explanation
Indices: 519312--519570 Score: 373
Period size: 130 Copynumber: 2.0 Consensus size: 125
519302 AAAAAATTTT
519312 AAAATAAAAAAGTTTTTTATTATAATTTTTAATAAAATAAAAGATAATATTTAA-TAAAGTTTAA
1 AAAATAAAAAAGTTTTTTATTATAATTTTTAATAAAATAAAAG---ATATTTAACT-AA-TTTAA
* * *
519376 AAAATTTACATTAACAAATT-AAA-ATTAATTATTATATTTTTATAAAATTAAAAAATTTTAAAA
61 AAAATTTACATAAAAAAATTAAAATATTAATTATTAT-GTTTT-TAAAA-TAAAAAATTTTAAAA
519439 TAA
123 TAA
*
519442 AAAATAAAAAAAG-TTTTTATTATAATTTTTAATAAAATAAAAGATATTTAACTAATTTTAAAAA
1 AAAAT-AAAAAAGTTTTTTATTATAATTTTTAATAAAATAAAAGATATTTAACTAATTTAAAAAA
519506 TTTACATAAAAAAATTAAAATATTAATTATTATGTTTTTAAAATAAAAAATTTTAAAATAA
65 TTTACATAAAAAAATTAAAATATTAATTATTATGTTTTTAAAATAAAAAATTTTAAAATAA
519567 AAAA
1 AAAA
519571 ATTTTTATTA
Statistics
Matches: 121, Mismatches: 4, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
125 22 0.18
126 27 0.22
127 17 0.14
128 13 0.11
130 35 0.29
131 7 0.06
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (125 bp):
AAAATAAAAAAGTTTTTTATTATAATTTTTAATAAAATAAAAGATATTTAACTAATTTAAAAAAT
TTACATAAAAAAATTAAAATATTAATTATTATGTTTTTAAAATAAAAAATTTTAAAATAA
Found at i:519559 original size:15 final size:16
Alignment explanation
Indices: 519541--519575 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
519531 ATTATTATGT
519541 TTTTAAAAT-AAAAAA
1 TTTTAAAATAAAAAAA
519556 TTTTAAAATAAAAAAA
1 TTTTAAAATAAAAAAA
519572 TTTT
1 TTTT
519576 TATTATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TTTTAAAATAAAAAAA
Found at i:519583 original size:17 final size:17
Alignment explanation
Indices: 519540--519577 Score: 62
Period size: 15 Copynumber: 2.4 Consensus size: 17
519530 AATTATTATG
519540 TTTTTAAAAT-AAAAAA
1 TTTTTAAAATAAAAAAA
519556 -TTTTAAAATAAAAAAA
1 TTTTTAAAATAAAAAAA
519572 TTTTTA
1 TTTTTA
519578 TTATAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 9 0.45
16 6 0.30
17 5 0.25
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTTTAAAATAAAAAAA
Found at i:520436 original size:92 final size:90
Alignment explanation
Indices: 520294--520748 Score: 490
Period size: 92 Copynumber: 5.0 Consensus size: 90
520284 TAATGTATGA
* * *
520294 ATTGTAAATATCAGATTATAAGGATTAGACTAATGCATGAATTATATTTGAGAAACAGATTCTTT
1 ATTGTAAATATCAGACTGTAAGGATTAGACTAATGCATGAATTATATTTGAGAATCAGATTCTTT
*
520359 TTTATAGAAAAAAAGAAAATTTGATTG
66 TTTATA-AAAAAAA-AAAAGTTGATTG
* *
520386 ATTGTAAATATCAGACTGTAAGAATTAGATTAATGCATGAATTATATTTGAGAATCAGATTCTTT
1 ATTGTAAATATCAGACTGTAAGGATTAGACTAATGCATGAATTATATTTGAGAATCAGATTCTTT
520451 TTTATAAAAAAAGAAAAAAAGTTGATTG
66 TTTAT--AAAAA-AAAAAAAGTTGATTG
* * * * * **
520479 AATGTAAATATTAAACTGCAAGGATTAGACTAATGCATGAGTTATATCAGAGAATCAGATTC-TT
1 ATTGTAAATATCAGACTGTAAGGATTAGACTAATGCATGAATTATATTTGAGAATCAGATTCTTT
* *
520543 TTT-TAAAGAAAAAAAAGTTGATTA
66 TTTATAAAAAAAAAAAAGTTGATTG
* * * * * * **
520567 AGTATAAATGTCAGA-TGCAAGGATTAAACTAATACATGAATTATATAAGAGAATC-GCATTC-T
1 ATTGTAAATATCAGACTGTAAGGATTAGACTAATGCATGAATTATATTTGAGAATCAG-ATTCTT
* * *
520629 TTTTATAGAAAATAAAAAGTTAATTG
65 TTTTATAAAAAAAAAAAAGTTGATTG
* ** * *
520655 ATTGTAAATGTCAGACTGTAAATATTAAACTAATGCATGAATTATATTTGAGAATCAAATT-TCT
1 ATTGTAAATATCAGACTGTAAGGATTAGACTAATGCATGAATTATATTTGAGAATCAGATTCT-T
* * *
520719 TTTTATAAAAAGCAGAAAAGTTAATTG
65 TTTTATAAAAA-AAAAAAAGTTGATTG
520746 ATT
1 ATT
520749 TTACATGTTA
Statistics
Matches: 309, Mismatches: 44, Indels: 21
0.83 0.12 0.06
Matches are distributed among these distances:
86 1 0.00
87 45 0.15
88 53 0.17
89 41 0.13
90 11 0.04
91 16 0.05
92 70 0.23
93 68 0.22
94 4 0.01
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.35
Consensus pattern (90 bp):
ATTGTAAATATCAGACTGTAAGGATTAGACTAATGCATGAATTATATTTGAGAATCAGATTCTTT
TTTATAAAAAAAAAAAAGTTGATTG
Done.