Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2354
Parameters: 2 7 7 80 10 50 1000
Length:  26824

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
220--258
20
2.0
20
85
10
53
53
0
0
46
1.00
1095--1237
5
29.8
5
68
18
72
39
0
0
60
0.97
1088--1154
32
2.1
33
83
13
86
35
0
0
64
0.94
1140--1237
19
5.0
19
75
15
83
38
0
0
61
0.96
1094--1256
85
1.9
83
81
9
197
39
0
0
59
1.02
1409--1446
14
2.6
14
91
4
58
68
0
0
31
0.90
1835--1891
15
3.6
15
73
13
51
54
0
0
45
0.99
1818--1895
33
2.4
33
81
10
88
57
0
0
42
0.98
2064--2095
2
16.0
2
100
0
64
50
0
0
50
1.00
4347--4429
32
2.6
33
83
7
100
77
0
16
6
0.97
5295--5429
66
2.0
66
90
2
209
34
17
19
28
1.94
6482--6521
5
8.0
5
85
0
53
87
0
0
12
0.54
6482--6521
10
4.0
10
93
0
71
87
0
0
12
0.54
6596--6663
19
3.9
19
78
21
85
35
11
14
38
1.83
6617--6641
13
1.9
13
100
0
50
36
16
16
32
1.90
6598--6660
32
2.0
32
96
0
117
34
12
15
36
1.86
6703--6728
13
2.0
13
100
0
52
30
15
15
38
1.88
6683--6749
33
2.0
33
88
0
98
25
14
16
43
1.86
9090--9263
51
3.4
51
80
4
204
31
24
10
33
1.89
9247--9328
28
2.9
28
80
7
87
24
32
17
25
1.96
13147--13225
20
3.8
20
77
12
79
35
15
11
37
1.83
14675--14717
21
2.0
21
86
0
59
34
11
2
51
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14867--14905
11
3.7
10
90
10
60
25
7
0
66
1.18
14868--14906
10
3.5
11
93
6
62
23
7
0
69
1.14
16624--16763
53
2.7
51
85
2
181
32
14
11
42
1.81
18924--19258
131
2.6
129
82
6
408
28
21
10
40
1.85
19132--19247
53
2.2
51
78
11
128
29
23
9
37
1.86
19191--19833
78
8.2
78
78
7
507
28
21
11
39
1.88
19777--19829
28
2.0
27
88
7
81
22
39
16
20
1.92
20601--20939
169
2.0
171
90
3
533
25
23
17
33
1.96
23850--24103
79
3.2
78
79
3
269
35
12
22
29
1.91
23889--24101
78
2.7
79
81
5
265
37
10
21
30
1.88
26491--26546
20
2.8
20
94
0
103
51
10
12
25
1.71
26441--26597
70
2.2
71
89
1
244
43
12
16
26
1.84

Tables:   1

The End!