Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2356
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 118393
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Found at i:5869 original size:13 final size:13
Alignment explanation
Indices: 5851--5876 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5841 ACATAATTGT
5851 TGTATCGATACAA
1 TGTATCGATACAA
5864 TGTATCGATACAA
1 TGTATCGATACAA
5877 AGCTACTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:14691 original size:19 final size:19
Alignment explanation
Indices: 14667--14729 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
14657 AAATAGTAAA
14667 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
14686 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
14699 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
14718 TGTATCGATACA
1 TGTATCGATACA
14730 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:14704 original size:13 final size:13
Alignment explanation
Indices: 14686--14743 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
14676 ACATAAGTGT
14686 TGTATCGATACAA
1 TGTATCGATACAA
14699 TGTATCGATACATAA
1 TGTATCGATAC--AA
14714 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
*
14731 TGTATCGCTACAA
1 TGTATCGATACAA
14744 AGCTACTTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:14706 original size:32 final size:32
Alignment explanation
Indices: 14665--14742 Score: 147
Period size: 32 Copynumber: 2.4 Consensus size: 32
14655 ACAAATAGTA
14665 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
14697 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
14729 AATGTATCGCTACA
1 AATGTATCGATACA
14743 AAGCTACTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:22673 original size:15 final size:15
Alignment explanation
Indices: 22661--22694 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
22651 AAGTAAACGC
22661 AAAAAAACAAAACAA
1 AAAAAAACAAAACAA
*
22676 AAAAAAAC-ACACAA
1 AAAAAAACAAAACAA
22690 AAAAA
1 AAAAA
22695 GTGCAAAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAACAA
Found at i:23038 original size:10 final size:9
Alignment explanation
Indices: 23019--23085 Score: 86
Period size: 9 Copynumber: 7.6 Consensus size: 9
23009 ATCTTCACAC
23019 AAAAAAA-A
1 AAAAAAACA
*
23027 AACAAAACAA
1 AAAAAAAC-A
23037 AAAAAAACA
1 AAAAAAACA
23046 AAAAAAAC-
1 AAAAAAACA
23054 AAAAAAACA
1 AAAAAAACA
23063 AAAAAAA-A
1 AAAAAAACA
23071 CAAAAAAACA
1 -AAAAAAACA
23081 AAAAA
1 AAAAA
23086 GAAAAAGGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
8 15 0.29
9 28 0.54
10 9 0.17
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:23041 original size:8 final size:8
Alignment explanation
Indices: 23022--23085 Score: 85
Period size: 8 Copynumber: 7.8 Consensus size: 8
23012 TTCACACAAA
23022 AAAAAAAC
1 AAAAAAAC
*
23030 AAAACAA-
1 AAAAAAAC
23037 AAAAAAAC
1 AAAAAAAC
23045 AAAAAAAAC
1 -AAAAAAAC
23054 AAAAAAAC
1 AAAAAAAC
23062 AAAAAAAAAC
1 --AAAAAAAC
23072 AAAAAAAC
1 AAAAAAAC
23080 AAAAAA
1 AAAAAA
23086 GAAAAAGGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
7 6 0.12
8 28 0.56
9 8 0.16
10 8 0.16
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:23042 original size:18 final size:18
Alignment explanation
Indices: 23019--23085 Score: 100
Period size: 18 Copynumber: 3.7 Consensus size: 18
23009 ATCTTCACAC
*
23019 AAAAAA-AAAACAAAACA
1 AAAAAACAAAAAAAAACA
*
23036 AAAAAAAACAAAAAAAACA
1 AAAAAACA-AAAAAAAACA
23055 AAAAAACAAAAAAAAACA
1 AAAAAACAAAAAAAAACA
23073 AAAAAACAAAAAA
1 AAAAAACAAAAAA
23086 GAAAAAGGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
17 6 0.13
18 24 0.52
19 16 0.35
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAACAAAAAAAAACA
Found at i:23048 original size:26 final size:25
Alignment explanation
Indices: 23017--23091 Score: 105
Period size: 27 Copynumber: 2.9 Consensus size: 25
23007 TAATCTTCAC
23017 ACAAAAAAAAAACAAAACAAAAAAAA
1 ACAAAAAAAAAA-AAAACAAAAAAAA
23043 ACAAAAAAAACAAAAAAACAAAAAAAA
1 AC-AAAAAAA-AAAAAAACAAAAAAAA
* *
23070 ACAAAAAAACAAAAAAGAAAAA
1 ACAAAAAAAAAAAAAACAAAAA
23092 GGAAAAACCC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
25 11 0.24
26 9 0.20
27 22 0.49
28 3 0.07
ACGTcount: A:0.88, C:0.11, G:0.01, T:0.00
Consensus pattern (25 bp):
ACAAAAAAAAAAAAAACAAAAAAAA
Found at i:23060 original size:27 final size:27
Alignment explanation
Indices: 23017--23085 Score: 115
Period size: 26 Copynumber: 2.6 Consensus size: 27
23007 TAATCTTCAC
*
23017 ACAAAAAAAA-AACAAAACAAAAAAAA
1 ACAAAAAAAACAAAAAAACAAAAAAAA
23043 ACAAAAAAAACAAAAAAACAAAAAAAA
1 ACAAAAAAAACAAAAAAACAAAAAAAA
23070 AC-AAAAAAACAAAAAA
1 ACAAAAAAAACAAAAAA
23086 GAAAAAGGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 24 0.59
27 17 0.41
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (27 bp):
ACAAAAAAAACAAAAAAACAAAAAAAA
Found at i:23098 original size:1 final size:1
Alignment explanation
Indices: 23019--23091 Score: 74
Period size: 1 Copynumber: 73.0 Consensus size: 1
23009 ATCTTCACAC
* * * * * * *
23019 AAAAAAAAAACAAAACAAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAACAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
23084 AAGAAAAA
1 AAAAAAAA
23092 GGAAAAACCC
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.89, C:0.10, G:0.01, T:0.00
Consensus pattern (1 bp):
A
Found at i:24205 original size:62 final size:62
Alignment explanation
Indices: 24035--24413 Score: 319
Period size: 62 Copynumber: 6.0 Consensus size: 62
24025 CTCTCTTCTT
* * * * *
24035 AAAGTCCATGACTAAGTGGCATCTCTTTTCT---AAGTCCACGACTCAATGGCATCTCTTTTCTT
1 AAAGTCCACGACTCAGTGGCAT-T-TTTTCTCCAAAGCCCACAACTCAGTGGCATCTCTTTTC--
24097 C
62 C
* * * *
24098 CAAGTCTACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTTTCC
1 AAAGTCCACGACTCAGTGGCA--TTTTTTCTCCAAAGCCCACAACTCAGTGGCATCTCTTTTCC
* *
24162 AAAGCCCACGACTCAGTGGCATTTTTTCTCCAAAGTCCACAACTCAGTGGCAATCTCTTTT-C
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAGCCCACAACTCAGTGGC-ATCTCTTTTCC
*
24224 AAAGTCCACGACTCAGTGGCATCTTTTTCCTTCAAAGCCCACAACTTC-GTGGCA-CTCTTTTTC
1 AAAGTCCACGACTCAGTGGCAT-TTTTT-CTCCAAAGCCCACAAC-TCAGTGGCATCTC-TTTT-
24287 CTTC
61 C--C
* * * * *
24291 TTAAAGTCCACGACTCAGTGGCATTTTGT-ACCAAA-CCCACGACTCAGTGGCATTTTTTTCTCC
1 --AAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAGCCCACAACTCAGTGGCATCTCTTT-TCC
* * * * *
24354 AAAATCCACAACTCTGTGGCATCTTTTTCCTGCAAAGCCCACAACTCCGT-GCA-CTCTTTT
1 AAAGTCCACGACTCAGTGGCAT-TTTTT-CTCCAAAGCCCACAACTCAGTGGCATCTCTTTT
24414 TCCTTTTAAG
Statistics
Matches: 264, Mismatches: 29, Indels: 47
0.78 0.09 0.14
Matches are distributed among these distances:
61 19 0.07
62 59 0.22
63 47 0.18
64 48 0.18
65 31 0.12
66 33 0.12
67 1 0.00
68 4 0.02
69 22 0.08
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.32
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAGCCCACAACTCAGTGGCATCTCTTTTCC
Found at i:24414 original size:33 final size:32
Alignment explanation
Indices: 24035--24501 Score: 317
Period size: 33 Copynumber: 14.7 Consensus size: 32
24025 CTCTCTTCTT
** *
24035 AAAGTCCATGACTAAGTGGCATCTCTTTT-CT-
1 AAAGTCCACAACTCAGTGGCATCT-TTTTCCTC
* * *
24066 -AAGTCCACGACTCAATGGCATCTCTTTTCTTC
1 AAAGTCCACAACTCAGTGGCATCT-TTTTCCTC
* * * *
24098 CAAGTCTACGACTCAGTGGCATCTTTTTTCTTC
1 AAAGTCCACAACTCAGTGGCATC-TTTTTCCTC
24131 AAAGTCCACAACTCAGTGGCATCTCTTTT-C-C
1 AAAGTCCACAACTCAGTGGCATCT-TTTTCCTC
* *
24162 AAAGCCCACGACTCAGTGGCAT-TTTTT-CTCC
1 AAAGTCCACAACTCAGTGGCATCTTTTTCCT-C
*
24193 AAAGTCCACAACTCAGTGGCAATCTCTTT--TC
1 AAAGTCCACAACTCAGTGGC-ATCTTTTTCCTC
*
24224 AAAGTCCACGACTCAGTGGCATCTTTTTCCTTC
1 AAAGTCCACAACTCAGTGGCATCTTTTTCC-TC
*
24257 AAAGCCCACAACTTC-GTGGCACTCTTTTTCCTTC
1 AAAGTCCACAAC-TCAGTGGCA-TCTTTTTCC-TC
* * *
24291 TTAAAGTCCACGACTCAGTGGCAT-TTTGTAC-C
1 --AAAGTCCACAACTCAGTGGCATCTTTTTCCTC
* * *
24323 AAA-CCCACGACTCAGTGGCAT-TTTTTTCTCC
1 AAAGTCCACAACTCAGTGGCATCTTTTTCCT-C
* *
24354 AAAATCCACAACTCTGTGGCATCTTTTTCCTGC
1 AAAGTCCACAACTCAGTGGCATCTTTTTCCT-C
* * *
24387 AAAGCCCACAACTCCGT-GCACTCTTTTTCCTTT
1 AAAGTCCACAACTCAGTGGCA-TCTTTTTCC-TC
* * * **
24420 TAAGTCTACAACTCCGTGGCA-CCCTTT--T-
1 AAAGTCCACAACTCAGTGGCATCTTTTTCCTC
* *
24448 -AAGCCCACAACTCGGTGGCAGTCTTTTTCCTTC
1 AAAGTCCACAACTCAGTGGCA-TCTTTTTCC-TC
* *
24481 TAAGTCCACAACTCCGTGGCA
1 AAAGTCCACAACTCAGTGGCA
24502 CCCTTTTAAG
Statistics
Matches: 358, Mismatches: 47, Indels: 59
0.77 0.10 0.13
Matches are distributed among these distances:
27 17 0.05
29 32 0.09
30 36 0.10
31 65 0.18
32 28 0.08
33 119 0.33
34 42 0.12
35 3 0.01
36 16 0.04
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.32
Consensus pattern (32 bp):
AAAGTCCACAACTCAGTGGCATCTTTTTCCTC
Found at i:24445 original size:27 final size:26
Alignment explanation
Indices: 24415--24562 Score: 143
Period size: 27 Copynumber: 5.2 Consensus size: 26
24405 CACTCTTTTT
24415 CCTTTTAAGTCTACAACTCCGTGGCAC
1 CCTTTTAAG-CTACAACTCCGTGGCAC
* *
24442 CCTTTTAAGCCCACAACTCGGTGGCAGTC
1 CCTTTTAAG-CTACAACTCCGTGGCA--C
* *
24471 TTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
1 -----CCTTTTAAG-CTACAACTCCGTGGCAC
24503 CCTTTTAAGCTCACAACTCCGTGGCAC
1 CCTTTTAAGCT-ACAACTCCGTGGCAC
24530 CCTTTTAAGCTCACAACTCCGTGGCAC
1 CCTTTTAAGCT-ACAACTCCGTGGCAC
*
24557 TCTTTT
1 CCTTTT
24563 TCCTTCAAAG
Statistics
Matches: 104, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
26 1 0.01
27 78 0.75
29 1 0.01
32 1 0.01
34 23 0.22
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.30
Consensus pattern (26 bp):
CCTTTTAAGCTACAACTCCGTGGCAC
Found at i:24485 original size:61 final size:61
Alignment explanation
Indices: 24388--24535 Score: 235
Period size: 61 Copynumber: 2.4 Consensus size: 61
24378 TTTTCCTGCA
* *
24388 AAGCCCACAACTCCGT-GCACTCTTTTTCCTTTTAAGTCTACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
* *
24448 AAGCCCACAACTCGGTGGCAGTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
* *
24509 AAGCTCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTT
24536 AAGCTCACAA
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
60 15 0.19
61 64 0.81
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.30
Consensus pattern (61 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
Found at i:24528 original size:88 final size:88
Alignment explanation
Indices: 24359--24596 Score: 293
Period size: 88 Copynumber: 2.6 Consensus size: 88
24349 TCTCCAAAAT
* * *
24359 CCACAACTCTGTGGCA-TCTTTTTCCTGCAAAGCCCACAACTCCGT-GCACTCTTTTTCCTTTTA
1 CCACAACTCCGTGGCACTCTTTTTCCTTCAAAGTCCACAACTCCGTGGCA--C-----CCTTTTA
24422 AGTCTACAACTCCGTGGCACCCTTTTAAGC
59 AGTCTACAACTCCGTGGCACCCTTTTAAGC
* * *
24452 CCACAACTCGGTGGCAGTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTTAAG-CTCA
1 CCACAACTCCGTGGCACTCTTTTTCCTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCT-A
24516 CAACTCCGTGGCACCCTTTTAAGC
65 CAACTCCGTGGCACCCTTTTAAGC
* ** *
24540 TCACAACTCCGTGGCACTCTTTTTCCTTCAAAGTCCATGACTCCGTGGCACCTTTTT
1 CCACAACTCCGTGGCACTCTTTTTCCTTCAAAGTCCACAACTCCGTGGCACCCTTTT
24597 CTTTTCTAAA
Statistics
Matches: 131, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
87 2 0.02
88 84 0.64
93 16 0.12
94 26 0.20
95 3 0.02
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (88 bp):
CCACAACTCCGTGGCACTCTTTTTCCTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCTAC
AACTCCGTGGCACCCTTTTAAGC
Found at i:24818 original size:92 final size:95
Alignment explanation
Indices: 24664--25650 Score: 1047
Period size: 92 Copynumber: 10.6 Consensus size: 95
24654 GTGGCATCAC
* * * *
24664 CTTTAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
* *
24729 GCTGGCCTTGAATCAGCACATT-G-CC-AC
66 GCTGGCCTTGAATCAGCATATTGGACCTAT
* * * * *
24756 CTTTAAGTCTAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
* *
24821 GCTGGCCTTGAATCAGCACATTGG--C-AC
66 GCTGGCCTTGAATCAGCATATTGGACCTAT
* * * * * *
24848 CTTTAAGTCCAATATAACTGGCCTTGAATTAGCATATTGGCACATTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
* * * *
24913 GTTGGCCTTAAATCAGCACATTGG--C-AC
66 GCTGGCCTTGAATCAGCATATTGGACCTAT
* * * *
24940 CTTTAAGTCCAATATAGCTAGCCATGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
25005 GCTGGCCTTGAATCAGCATATTGGCACCTTTAT
66 GCTGGCCTTGAATCAGCATATTGG-ACC--TAT
* * * *
25038 CTTTAAGTCCAATGCAGCTGGACTTGAATCAACAGATTGG---C---ATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
25097 GCTGGCCTTGAATCAGCATATTGGCACCTTTAT
66 GCTGGCCTTGAATCAGCATATTGG-ACC--TAT
25130 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
*
25189 GCTGGCCTTGAATCAGTATATTGGCACCTTTAT
66 GCTGGCCTTGAATCAGCATATTGG-ACC--TAT
** *
25222 CTTTAAGTCCAATGTAGCTAACCTTGAATCAGCACATTGGCACCTTTA-----AA-TCCAATATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
25281 GCTGGCCTTGAATCAGCATATTGGCACCTTTAT
66 GCTGGCCTTGAATCAGCATATTGG-ACC--TAT
*
25314 CTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACC----T-TTT-AGTCCAATATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
*
25373 GCTGGCTTTGAATCAGCATATTGGCACCTTTAT
66 GCTGGCCTTGAATCAGCATATTGG-ACC--TAT
* *
25406 CTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
25465 GCTGGCCTTGAATCAGCATATTGGCACCTTTAT
66 GCTGGCCTTGAATCAGCATATTGG-ACC--TAT
*
25498 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
25557 GCTGGCCTTGAATCAGCATATTGGCACCTTTAT
66 GCTGGCCTTGAATCAGCATATTGG-ACC--TAT
* * * *
25590 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TT-T-ATCTTTAAGTC
25651 TACTGTTGCT
Statistics
Matches: 815, Mismatches: 50, Indels: 51
0.89 0.05 0.06
Matches are distributed among these distances:
91 5 0.01
92 759 0.93
93 5 0.01
94 1 0.00
95 2 0.00
98 34 0.04
101 9 0.01
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (95 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATA
GCTGGCCTTGAATCAGCATATTGGACCTAT
Found at i:30782 original size:48 final size:50
Alignment explanation
Indices: 30701--30831 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 50
30691 ATTGGGCTTA
* * *
30701 TGCCAATGTGCTGATTTAAGGCCAGCGACATTGG-TCTTAAAGACAAA-G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGATCTTAAAGACAAAGG
* * * * *
30749 TGTCAGTATGCTGATTCAAGGCCAACGATATTGGATTTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGATCTTAAAGACAAAGG
* *
30799 TGCCAATATGCTGGTTCAAGGACAGCGATATTG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTG
30832 ACCTTAGAAG
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
48 28 0.41
49 11 0.16
50 29 0.43
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (50 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGATCTTAAAGACAAAGG
Found at i:30946 original size:29 final size:29
Alignment explanation
Indices: 30859--30953 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
30849 TACCAACTTG
* *
30859 TGTGGGCTTTTGAAAGGGTTG-CATCAACT
1 TGTGGGCTTTTGAAAGGG-TGCCACCGACT
* * *
30888 TGTGTGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGGTGCCACCGACT
30916 TGTGGGC-TTTGAAAGAGGTGCCACCGACT
1 TGTGGGCTTTTGAAAG-GGTGCCACCGACT
30945 TGTGGGCTT
1 TGTGGGCTT
30954 ACAGGGAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
27 6 0.11
28 18 0.33
29 29 0.54
30 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.34
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGGTGCCACCGACT
Found at i:30997 original size:34 final size:32
Alignment explanation
Indices: 30959--31153 Score: 133
Period size: 27 Copynumber: 6.2 Consensus size: 32
30949 GGCTTACAGG
*
30959 GAAAAGGGATGCCATGGAGGTGTAGG-CTTAAAAA
1 GAAAA-GG-TGCCACGGAGGTGT-GGACTTAAAAA
*
30993 GAAAAGGTGCCACGGAGTTGTGGACTT-AAAA
1 GAAAAGGTGCCACGGAGGTGTGGACTTAAAAA
* *
31024 G----GGTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAGGTGCCACGGAGGTGTGGAC-TTAAAAA
*
31053 GAAGAAAGGTGCCACGGAGTTGTGGACTT-AAAA
1 G-A-AAAGGTGCCACGGAGGTGTGGACTTAAAAA
* * * *
31086 G----GATGCCACGGAGTTATGGGCTTTAAAAA
1 GAAAAGGTGCCACGGAGGTGTGGAC-TTAAAAA
* *
31115 GAAAAAGGTGCCACGGAGTTGTGGACTTTCAAAA
1 G-AAAAGGTGCCACGGAGGTGTGGAC-TTAAAAA
31149 GAAAA
1 GAAAA
31154 ATATGCCACT
Statistics
Matches: 134, Mismatches: 11, Indels: 33
0.75 0.06 0.19
Matches are distributed among these distances:
27 36 0.27
28 4 0.03
29 10 0.07
31 7 0.05
32 15 0.11
33 11 0.08
34 32 0.24
35 19 0.14
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.20
Consensus pattern (32 bp):
GAAAAGGTGCCACGGAGGTGTGGACTTAAAAA
Found at i:31068 original size:35 final size:34
Alignment explanation
Indices: 31020--31177 Score: 168
Period size: 34 Copynumber: 4.8 Consensus size: 34
31010 TTGTGGACTT
* *
31020 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAG
31054 AAGAAAGGTGCCACGGAGTTGTGGAC-TT-AAAAG
1 AA-AAAGGTGCCACGGAGTTGTGGACTTTAAAAAG
* * *
31087 -----GATGCCACGGAGTTATGGGCTTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAG
*
31116 AAAAAGGTGCCACGGAGTTGTGGACTTTCAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAG
** * *
31150 AAAAATATGCCACTGACTTGTGGACTTT
1 AAAAAGGTGCCACGGAGTTGTGGACTTT
31178 TGAAGGTTGC
Statistics
Matches: 103, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
27 17 0.17
28 2 0.02
29 5 0.05
33 5 0.05
34 53 0.51
35 21 0.20
ACGTcount: A:0.34, C:0.14, G:0.30, T:0.23
Consensus pattern (34 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAG
Found at i:31073 original size:62 final size:61
Alignment explanation
Indices: 30960--31142 Score: 289
Period size: 62 Copynumber: 3.0 Consensus size: 61
30950 GCTTACAGGG
* * *
30960 AAAAGGGATGCCATGGAGGTGTAGGC-TTAAAAAG-AAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGGG-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
31020 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA-AAAGGTGCCACGGAGTTGTGGACTT
* *
31082 AAAAGGATGCCACGGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
31143 TCAAAAGAAA
Statistics
Matches: 115, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
59 15 0.13
60 15 0.13
61 26 0.23
62 59 0.51
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (61 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
Found at i:31132 original size:96 final size:97
Alignment explanation
Indices: 31020--31213 Score: 248
Period size: 96 Copynumber: 2.0 Consensus size: 97
31010 TTGTGGACTT
* * * *
31020 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAAGGTGCCACGGAGTTGTGGAC-TTAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAA-AAAGATGCCACGGACTTGTGGACTTTAA
*
31084 AAGGATGCCACGGAGTTATGGGCTTTA-AAAAG
65 AAGGATGCCACGGACTTATGGGCTTTAGAAAAG
* * * **
31116 AAAAAGGTGCCACGGAGTTGTGGACTTTCAAAAGAAAAATATGCCACTGACTTGTGGACTTTTGA
1 AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAGATGCCACGGACTTGTGGACTTTAAA
* * *
31181 AGGTTGCCACTGACTTGTGGGCTTTAGAAAAG
66 AGGATGCCACGGACTTATGGGCTTTAGAAAAG
31213 A
1 A
31214 TGCCACTGAC
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
95 19 0.23
96 58 0.70
97 6 0.07
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (97 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAGATGCCACGGACTTGTGGACTTTAAA
AGGATGCCACGGACTTATGGGCTTTAGAAAAG
Found at i:31189 original size:28 final size:28
Alignment explanation
Indices: 31157--31243 Score: 120
Period size: 28 Copynumber: 3.1 Consensus size: 28
31147 AAGAAAAATA
*
31157 TGCCACTGACTTGTGGACTTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
* * *
31185 TGCCACTGACTTGTGGGCTTTAGAAAAGA
1 TGCCACTGACTTGTGGGCTTTTG-AAGGT
*
31214 TGCCACTGACTTATGGGCTTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
31242 TG
1 TG
31244 AGGAACGTCT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
28 26 0.52
29 24 0.48
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTTGAAGGT
Found at i:32672 original size:11 final size:11
Alignment explanation
Indices: 32665--32712 Score: 69
Period size: 11 Copynumber: 4.3 Consensus size: 11
32655 TTGTTTTTTG
32665 TTTTTTTTTCT
1 TTTTTTTTTCT
32676 TTTTTTTCTTCT
1 TTTTTTT-TTCT
* *
32688 TTCTTTTCTCT
1 TTTTTTTTTCT
32699 TTTTTTTTTCT
1 TTTTTTTTTCT
32710 TTT
1 TTT
32713 GCGGAGGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 22 0.69
12 10 0.31
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:32682 original size:10 final size:10
Alignment explanation
Indices: 32648--32712 Score: 58
Period size: 10 Copynumber: 6.1 Consensus size: 10
32638 CATCTAGACC
* *
32648 TTTTTTGTTG
1 TTTTTTCTTT
*
32658 TTTTTTGTTT
1 TTTTTTCTTT
32668 TTTTTTCTTTT
1 TTTTTTC-TTT
32679 TTTTCTTCTTT
1 TTTT-TTCTTT
*
32690 CTTTTCTCTTTT
1 -TTTTTTC-TTT
32702 TTTTTTCTTT
1 TTTTTTCTTT
32712 T
1 T
32713 GCGGAGGATG
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
10 19 0.40
11 18 0.38
12 10 0.21
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.85
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:32694 original size:22 final size:22
Alignment explanation
Indices: 32658--32711 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
32648 TTTTTTGTTG
* *
32658 TTTTTTGTTT-TTTTTTCTTTT
1 TTTTTTCTTTCTTTTCTCTTTT
32679 TTTTCTTCTTTCTTTTCTCTTTT
1 TTTT-TTCTTTCTTTTCTCTTTT
32702 TTTTTTCTTT
1 TTTTTTCTTT
32712 TGCGGAGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 4 0.14
22 11 0.38
23 14 0.48
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (22 bp):
TTTTTTCTTTCTTTTCTCTTTT
Found at i:48102 original size:61 final size:61
Alignment explanation
Indices: 47859--48487 Score: 668
Period size: 61 Copynumber: 10.4 Consensus size: 61
47849 AACCTTTTAT
* * * * * *
47859 CCTTTCAGTCCTTAAAGCA-CATGATGTCTTTTTCTTTTAAAGCCCACATAAGTTGGCGGCA
1 CCTTTCAGTCCTCAAAG-AGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
47920 TCTTTTAGTCCTCGAAGAGCAAGGCACT-TCTTTT-CTGTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGC-AGG-A-TGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
47982 CATTTTAGTCCTTAAAGAGCAGGATG-CTTTTCCTTTTAAAGCTCATACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
48042 CCTTTCAGTCCTCAAAGAGCGGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
48103 CCTTTCAGTCCTCAAAAAGCATGATGCCTTTTCCTTTCAAAGCCCACACAATTTGGTGGGA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
** * * * * *
48164 CCTTTCAGTTATAAAAAAAG-AGGACGTCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCA
1 CCTTTCAGTCCT-CAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * **
48225 CCTTTCAATCCTCAAAGAGCATGACGCCTTTTCCTTTTAAAGCCCATGCAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * ** *
48286 CCTTTCAATTCTCAAAGAGCAAGATGTCTTTTTCTTTTAAATCCCACACAAGTCAGTGGTA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
48347 CCTTTCAGTCCTCAAAGAG-A-CAT--CTTTTCCTTTTAAAGCCCACATAAGTCGGTCGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
48404 CCTTTCAGTCCTTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTTGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
48465 GC-TTCTAGT-CTCCAAAGAGCAGG
1 CCTTTC-AGTCCT-CAAAGAGCAGG
48488 GCACTTCTTT
Statistics
Matches: 481, Mismatches: 72, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
57 46 0.10
58 1 0.00
59 10 0.02
60 60 0.12
61 307 0.64
62 49 0.10
63 7 0.01
64 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (61 bp):
CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:49163 original size:30 final size:30
Alignment explanation
Indices: 49122--49213 Score: 96
Period size: 30 Copynumber: 3.4 Consensus size: 30
49112 TCCTTCATTA
49122 TATCGATACATTCTGGGTTTTACCCAGATG
1 TATCGATACATTCTGGGTTTTACCCAGATG
* *
49152 TATCAATACA-------TTTT--CCA-TTG
1 TATCGATACATTCTGGGTTTTACCCAGATG
49172 TATCGATACATTCTGGGTTTTACCCAGATG
1 TATCGATACATTCTGGGTTTTACCCAGATG
49202 TATCGATACATT
1 TATCGATACATT
49214 TCTTAATGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 20
0.67 0.06 0.28
Matches are distributed among these distances:
20 11 0.23
21 3 0.06
23 4 0.08
27 4 0.08
29 3 0.06
30 23 0.48
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (30 bp):
TATCGATACATTCTGGGTTTTACCCAGATG
Found at i:49176 original size:50 final size:49
Alignment explanation
Indices: 49100--49214 Score: 185
Period size: 50 Copynumber: 2.3 Consensus size: 49
49090 TTCCACAATT
*
49100 TGTATCGATACATCCTTCATTATATCGATACATTCTGGGTTTTACCCAGA
1 TGTATCGATACAT-TTTCATTATATCGATACATTCTGGGTTTTACCCAGA
* *
49150 TGTATCAATACATTTTCCATTGTATCGATACATTCTGGGTTTTACCCAGA
1 TGTATCGATACATTTT-CATTATATCGATACATTCTGGGTTTTACCCAGA
49200 TGTATCGATACATTT
1 TGTATCGATACATTT
49215 CTTAATGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
49 2 0.03
50 58 0.97
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (49 bp):
TGTATCGATACATTTTCATTATATCGATACATTCTGGGTTTTACCCAGA
Found at i:49224 original size:50 final size:50
Alignment explanation
Indices: 49100--49234 Score: 184
Period size: 50 Copynumber: 2.7 Consensus size: 50
49090 TTCCACAATT
* *
49100 TGTATCGATACA-TCCTTCATTATATCGATACATTCTGGGTTTTACCCAGA
1 TGTATCGATACATTTCTT-ATTGTATCGATACATTCTGGGTTTTACCCAGA
* *
49150 TGTATCAATACATTT-TCCATTGTATCGATACATTCTGGGTTTTACCCAGA
1 TGTATCGATACATTTCT-TATTGTATCGATACATTCTGGGTTTTACCCAGA
* *
49200 TGTATCGATACATTTCTTAATGTATCGATGCATTC
1 TGTATCGATACATTTCTTATTGTATCGATACATTC
49235 AGGTATTTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
50 72 0.97
51 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (50 bp):
TGTATCGATACATTTCTTATTGTATCGATACATTCTGGGTTTTACCCAGA
Found at i:49862 original size:43 final size:43
Alignment explanation
Indices: 49689--49854 Score: 199
Period size: 43 Copynumber: 3.9 Consensus size: 43
49679 AAAAATAAAG
* * * * * *
49689 GAAGTCTCCCGAGTCAAAGCTGACAAGCAGAC-AAAGGGTGAA
1 GAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTTAAGAGTGAA
* *
49731 GAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGGGTGAA
1 GAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTTAAGAGTGAA
* * *
49774 GAAGTCTTCAAGGTCAAAGCCGACAGGCAGACTTAAAAGTGAA
1 GAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTTAAGAGTGAA
* * *
49817 GAAGTCTCCAGGGTCAAAGCTGATAGGCAAACTTAAGA
1 GAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTTAAGA
49855 TTAAAGAATC
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 27 0.25
43 79 0.75
ACGTcount: A:0.37, C:0.19, G:0.28, T:0.16
Consensus pattern (43 bp):
GAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTTAAGAGTGAA
Found at i:49979 original size:44 final size:44
Alignment explanation
Indices: 49931--50053 Score: 151
Period size: 44 Copynumber: 2.8 Consensus size: 44
49921 ATGCGAATCG
* *
49931 TTTAACTAGGGTGGTAACCATACATCAAACAGGAAGGAGACA-AA
1 TTTAACTAGGGTGGTAACCATACATCAAACAGAAAGGA-AAATAA
* *
49975 TTTAACTAGGGTGATAACCATACATCAAATC-GAAATGAAAATAA
1 TTTAACTAGGGTGGTAACCATACATCAAA-CAGAAAGGAAAATAA
* * *
50019 TCTAACCAGGGTGGTAACCATACATCAGACAGAAA
1 TTTAACTAGGGTGGTAACCATACATCAAACAGAAA
50054 AGAGGAGAGT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 3 0.04
44 64 0.94
45 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (44 bp):
TTTAACTAGGGTGGTAACCATACATCAAACAGAAAGGAAAATAA
Found at i:50530 original size:92 final size:92
Alignment explanation
Indices: 50373--50694 Score: 372
Period size: 92 Copynumber: 3.5 Consensus size: 92
50363 TGGTCATGTA
* ** * * * *
50373 ATGCATCATTACCATCTAGTGGTGGAGAGAAA-GGGATATGATAGGGAATGAGTGGTCGGGATAT
1 ATGCATCAATACCATCTAGTGGTTTAGATAAAGGGGATATGATTGGGAATAAGTGGT-GCGATAT
50437 CCTTGCCCCAAGGATATTAGGCTTTGTG
65 CCTTGCCCCAAGGATATTAGGCTTTGTG
*
50465 ATGCATCAATACCATCTAGTGGTTTAG-TAAAGGGAATATGATTGGGAATAAGTGGTTGCGATAT
1 ATGCATCAATACCATCTAGTGGTTTAGATAAAGGGGATATGATTGGGAATAAGTGG-TGCGATAT
*
50529 CCTTGCCCCAAGGATATCAGGCTTTGTG
65 CCTTGCCCCAAGGATATTAGGCTTTGTG
* * * * *
50557 ATACATCAATACCATCTAGTGGTTTA-ATGAAGGGGATGTGATTGGGAATGTA-TGG-GCTG-GA
1 ATGCATCAATACCATCTAGTGGTTTAGATAAAGGGGATATGATTGGGAAT-AAGTGGTGC-GATA
* *
50618 -CCTTGCCCCAAGGAAATTAGGCTTGGTG
64 TCCTTGCCCCAAGGATATTAGGCTTTGTG
* * * *
50646 ATGTATCAATACCATCTAATGG-TTGGATGAAGGGGATATGATTGGGAAT
1 ATGCATCAATACCATCTAGTGGTTTAGATAAAGGGGATATGATTGGGAAT
50695 GTATAGACTC
Statistics
Matches: 201, Mismatches: 23, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
88 2 0.01
89 66 0.33
90 3 0.01
91 4 0.02
92 124 0.62
93 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (92 bp):
ATGCATCAATACCATCTAGTGGTTTAGATAAAGGGGATATGATTGGGAATAAGTGGTGCGATATC
CTTGCCCCAAGGATATTAGGCTTTGTG
Found at i:52951 original size:13 final size:13
Alignment explanation
Indices: 52933--52958 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52923 TTTCAACGAT
52933 TTGTATCGATACA
1 TTGTATCGATACA
52946 TTGTATCGATACA
1 TTGTATCGATACA
52959 CTGATCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:53932 original size:20 final size:20
Alignment explanation
Indices: 53895--53933 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
53885 ACAACCTTGA
*
53895 TCATGCATTTTTACCATGTT
1 TCATGCATTTATACCATGTT
*
53915 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
53934 CCAGCACCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
TCATGCATTTATACCATGTT
Found at i:57378 original size:79 final size:79
Alignment explanation
Indices: 57247--57726 Score: 379
Period size: 79 Copynumber: 6.1 Consensus size: 79
57237 TCATCTCGGG
** * * * *
57247 GATACTCTGACCCCGAGTTTT-TTTCTAAAATACTGATTTTTCACCATCGGGGATACTCGAACCC
1 GATACTCCAACCCC-AGTTTTATTTCTCAAACACCGATTTTTCACCATCGGGGATACTCTAACCC
* *
57311 CGTTATTTTCGCGGA
65 TGTTATTTTCGAGGA
57326 GATACTCCAACCCCAGTTTTATTT-TCAAGACACCGATTTTTCACCATCGGGGATACTCTAACCC
1 GATACTCCAACCCCAGTTTTATTTCTCAA-ACACCGATTTTTCACCATCGGGGATACTCTAACCC
57390 TGTTATTTTCGAAGG-
65 TGTTATTTTCG-AGGA
* * * ** * *
57405 GATACTCTAA-CCCTGATTTTATTTCTGAAACACTAATTTTTCATCATCGAGGATACTCTAACCC
1 GATACTCCAACCCCAG-TTTTATTTCTCAAACACCGATTTTTCACCATCGGGGATACTCTAACCC
* *
57469 TATTATTTTCGATGA
65 TGTTATTTTCGAGGA
* * * *** ** * * *
57484 GATACTCCAACCCCAATTTTATTTCTAAAATATTAATTTTTCATAATTGGTGATACT-TCAATCC
1 GATACTCCAACCCCAGTTTTATTTCTCAAACACCGATTTTTCACCATCGGGGATACTCT-AACCC
* * *
57548 TATTATTTTTGA-AA
65 TGTTATTTTCGAGGA
* * * * * * * *
57562 GAAACTTCAACCTCGATTTTTATTTCTTAAACATCGATTTTTCATCATCGGGGATACTCCAATCC
1 GATACTCCAACC-CCAGTTTTATTTCTCAAACACCGATTTTTCACCATCGGGGATACTCTAA-CC
57627 C-GTTATTTTCGAAGG-
64 CTGTTATTTTCG-AGGA
* * ** * **
57642 GATACTCTAACCCC-GATTTTA-TTCTAAAACATTGATTTTACATAATCGGGGATACTCTAACCC
1 GATACTCCAACCCCAG-TTTTATTTCTCAAACACCGATTTTTCACCATCGGGGATACTCTAACCC
57705 TGTTATTTTCGA-GA
65 TGTTATTTTCGAGGA
57719 GGATACTC
1 -GATACTC
57727 TGAGAGAATA
Statistics
Matches: 328, Mismatches: 56, Indels: 35
0.78 0.13 0.08
Matches are distributed among these distances:
76 1 0.00
77 4 0.01
78 78 0.24
79 225 0.69
80 20 0.06
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (79 bp):
GATACTCCAACCCCAGTTTTATTTCTCAAACACCGATTTTTCACCATCGGGGATACTCTAACCCT
GTTATTTTCGAGGA
Found at i:57539 original size:158 final size:158
Alignment explanation
Indices: 57245--57727 Score: 509
Period size: 158 Copynumber: 3.1 Consensus size: 158
57235 TTTCATCTCG
* * * * *
57245 GGGATACTCTGACCCCGAGTTTT-TTTCTAAAATACTGATTTTTCACCATCGGGGATACTCGAAC
1 GGGATACTCTAACCCTGAGTTTTATTTCTAAAACACTGATTTTTCATCATCGGGGATACTCCAA-
** * * ** **
57309 CCCGTTATTTTCGCGGAGATACTCCAACCCCAGTTTTATTT-TCAAGACACCGATTTTTCACCAT
65 CCCGTTATTTTCGAAGAGATACTCCAACCCCAATTTTATTTCT-AAAACATTGATTTTTCATAAT
57373 CGGGGATACTCTAACCCTGTTATTTTCGAA
129 CGGGGATACTCTAACCCTGTTATTTTCGAA
* * * *
57403 GGGATACTCTAACCCTGA-TTTTATTTCTGAAACACTAATTTTTCATCATCGAGGATACTCTAAC
1 GGGATACTCTAACCCTGAGTTTTATTTCTAAAACACTGATTTTTCATCATCGGGGATACTCCAAC
* * * * *
57467 CCTATTATTTTCGATGAGATACTCCAACCCCAATTTTATTTCTAAAATATTAATTTTTCATAATT
66 CC-GTTATTTTCGAAGAGATACTCCAACCCCAATTTTATTTCTAAAACATTGATTTTTCATAATC
* * * *
57532 GGTGATACT-TCAATCCTATTATTTTTGAA
130 GGGGATACTCT-AACCCTGTTATTTTCGAA
* * * *
57561 -AGAAACT-TCAA-CCTCGATTTTTATTTCTTAAACA-TCGATTTTTCATCATCGGGGATACTCC
1 GGGATACTCT-AACCCT-GAGTTTTATTTCTAAAACACT-GATTTTTCATCATCGGGGATACTCC
* * * *
57622 AATCCCGTTATTTTCGAAGGGATACTCTAACCCCGATTTTA-TTCTAAAACATTGATTTTACATA
63 AA-CCCGTTATTTTCGAAGAGATACTCCAACCCCAATTTTATTTCTAAAACATTGATTTTTCATA
57686 ATCGGGGATACTCTAACCCTGTTATTTTCG-A
127 ATCGGGGATACTCTAACCCTGTTATTTTCGAA
57717 GAGGATACTCT
1 G-GGATACTCT
57728 GAGAGAATAT
Statistics
Matches: 267, Mismatches: 45, Indels: 25
0.79 0.13 0.07
Matches are distributed among these distances:
156 5 0.02
157 61 0.23
158 196 0.73
159 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (158 bp):
GGGATACTCTAACCCTGAGTTTTATTTCTAAAACACTGATTTTTCATCATCGGGGATACTCCAAC
CCGTTATTTTCGAAGAGATACTCCAACCCCAATTTTATTTCTAAAACATTGATTTTTCATAATCG
GGGATACTCTAACCCTGTTATTTTCGAA
Found at i:58796 original size:44 final size:44
Alignment explanation
Indices: 58747--58831 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
58737 CACAACTATG
58747 AGCATTAATAAAAG-GGCAAATGCAAATGAAACT-ATGCAAATACA
1 AGCATTAAT-AAAGTGGCAAATGCAAATGAAA-TGATGCAAATACA
* * *
58791 AGCATTAGTAAAGTGGCAAATGCATATTAAATGATGCAAAT
1 AGCATTAATAAAGTGGCAAATGCAAATGAAATGATGCAAAT
58832 GCCAATGTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 5 0.14
44 31 0.86
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (44 bp):
AGCATTAATAAAGTGGCAAATGCAAATGAAATGATGCAAATACA
Found at i:58896 original size:87 final size:88
Alignment explanation
Indices: 58800--58973 Score: 210
Period size: 87 Copynumber: 2.0 Consensus size: 88
58790 AAGCATTAGT
* * * * * * *
58800 AAAGTGGCAAATGCATATTAAATGATGCAAATGCCAAT-GTCATCT-GAATGCAAATGTATGTAA
1 AAAGGGGCAAACGCATATGAAATGATGCAAATACC-ATCGTAATCTAAAATGCAAATGTAGGTAA
58863 AATGA-TACAAATGCAAACATCAAC
65 AAT-ACTACAAATGCAAACATCAAC
* * *
58887 AAAGGGGCAAACGCATATGCAATGATGCAAATACCATCGTAATCTAAAATGCAAATGTAGGTGAG
1 AAAGGGGCAAACGCATATGAAATGATGCAAATACCATCGTAATCTAAAATGCAAATGTAGGTAAA
*
58952 ATACTACAAATGCAATCATCAA
66 ATACTACAAATGCAAACATCAA
58974 TAGAATGATA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
86 2 0.03
87 37 0.51
88 34 0.47
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.22
Consensus pattern (88 bp):
AAAGGGGCAAACGCATATGAAATGATGCAAATACCATCGTAATCTAAAATGCAAATGTAGGTAAA
ATACTACAAATGCAAACATCAAC
Found at i:58991 original size:88 final size:87
Alignment explanation
Indices: 58807--59008 Score: 205
Period size: 88 Copynumber: 2.3 Consensus size: 87
58797 AGTAAAGTGG
* * * * *
58807 CAAATGCATATTAAATGATGCAAATGCCAATGTCATCTGAATGCAAATGTATGTAAAATGATACA
1 CAAATGCATATGAAATGATGCAAATACCAATGTAATCTAAATGCAAATGTAGGTAAAATGATACA
*
58872 AATGCAAACATCAACAAAGGGG
66 AATGCAAACATCAACAAAGGGA
* * * *
58894 CAAACGCATATGCAATGATGCAAATACC-ATCGTAATCTAAAATGCAAATGTAGGTGAGAT-ACT
1 CAAATGCATATGAAATGATGCAAATACCAAT-GTAATCT-AAATGCAAATGTAGGTAAAATGA-T
* * *
58957 ACAAATGCAATCATCAATAGAA-TGA
63 ACAAATGCAAACATCAACA-AAGGGA
*
58982 TAAATGCATATGAAAAT-ATGCAAATAC
1 CAAATGCATATG-AAATGATGCAAATAC
59009 TAATCCAGTC
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
86 2 0.02
87 31 0.33
88 56 0.60
89 5 0.05
ACGTcount: A:0.46, C:0.15, G:0.16, T:0.23
Consensus pattern (87 bp):
CAAATGCATATGAAATGATGCAAATACCAATGTAATCTAAATGCAAATGTAGGTAAAATGATACA
AATGCAAACATCAACAAAGGGA
Found at i:60027 original size:35 final size:35
Alignment explanation
Indices: 59956--60045 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 35
59946 GGATGCACCA
* *
59956 TTTTTCATTTTCTTCATTTTTACTATCTACACTTTTC
1 TTTTTCA-TTTCTT-TTTTTTCCTATCTACACTTTTC
* *
59993 TTTTTCATTTCTTGTTTTTTCCT-TCTTCAGTTTTC
1 TTTTTCATTTCTT-TTTTTTCCTATCTACACTTTTC
60028 -TTTTC-TTTCTTTTTTTTC
1 TTTTTCATTTCTTTTTTTTC
60046 TTTTTTTTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
32 7 0.15
33 6 0.12
34 5 0.10
35 10 0.21
36 13 0.27
37 7 0.15
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.69
Consensus pattern (35 bp):
TTTTTCATTTCTTTTTTTTCCTATCTACACTTTTC
Found at i:60050 original size:9 final size:9
Alignment explanation
Indices: 60023--60053 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
60013 CCTTCTTCAG
60023 TTTTCTTTT
1 TTTTCTTTT
*
60032 CTTTCTTTT
1 TTTTCTTTT
60041 TTTTCTTTT
1 TTTTCTTTT
60050 TTTT
1 TTTT
60054 TAGAGGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:62194 original size:23 final size:23
Alignment explanation
Indices: 62168--62222 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
62158 CAAGGGTTAG
* *
62168 TGAAAAATATAAACAACATATAT
1 TGAAAAATATAAAAAACATATAA
** *
62191 TGAAATTTATAAAAAATATATAA
1 TGAAAAATATAAAAAACATATAA
62214 T-AAAAATAT
1 TGAAAAATAT
62223 CGGGGATTAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (23 bp):
TGAAAAATATAAAAAACATATAA
Found at i:63753 original size:155 final size:154
Alignment explanation
Indices: 63527--64476 Score: 720
Period size: 155 Copynumber: 6.1 Consensus size: 154
63517 TATCTGATAC
* * *
63527 CCCTAAAAGACTTAAAAAGGA-TAGA-AATGGCATGGACCTATCCTAAATGCCCACCTTC-GACA
1 CCCTAAAGGACTTAAAAA-GACTAGAGAA-GGGATGAACCTATCCTAAATGCCCACCTTCAG-CA
** *
63589 TAAAAGCGGACTTGGTGACAACCTAGGAGT-TGTTTCTAAAAAATTAT-AAAATGTCCCTACGAG
63 TAAAAGCGGACCCGGTGACAACCTAGGAGTCTGTTT-TAAAAAATTATGAAAAT-ACCCTA-GAG
*
63652 TATACCTTCGACGTAAAAGTATCCCAACAA
125 GATACCTTCGACGTAAAAGTATCCCAACAA
*
63682 CCCTAAAGGATTTAAAAAGACTAGAGAAGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAA
1 CCCTAAAGGACTTAAAAAGACTAGAGAAGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAA
** * * ** *
63747 AAGCGGACCTAGTGACAACCTAGGAAT-TGGTTCTAAAAAATTACAAAAATACCCTTATAGGTAT
66 AAGCGGACCCGGTGACAACCTAGGAGTCT-GTTTTAAAAAATTATGAAAATACCC-TAGAGG-AT
** ***
63811 ACCTTCGACAAAAAAGTATCCTGGCAA
128 ACCTTCGACGTAAAAGTATCCCAACAA
*
63838 CCCTAAAGGACTTAAAAAGACTAGAGATA-GGATGAACCTATCCTAAATGCCCACCTTC-GACAA
1 CCCTAAAGGACTTAAAAAGACTAGAGA-AGGGATGAACCTATCCTAAATGCCCACCTTCAG-CAT
*** * * * * * *
63901 AAAAAAAGACTCGGTGACAACCTAAGAGT-TGGTTCTAATAAATTACGAAAATACCCCTATAGGA
64 AAAAGCGGACCCGGTGACAACCTAGGAGTCT-GTTTTAAAAAATTATGAAAATA-CCCTAGAGGA
* ***
63965 TACCTTCGACGTGAAAGTATCCC-TGTA
127 TACCTTCGACGTAAAAGTATCCCAACAA
** * ** * * *
63992 CCCTTAATA-GACTTAAAAAGGTTTA-A-AATGGGATGAACCTATCCTATATATCTATCTTCGGC
1 CCC-TAA-AGGACTTAAAAA-GACTAGAGAA-GGGATGAACCTATCCTAAATGCCCACCTTCAGC
* ** * * ** *
64054 ATAAAAGCGGACCAC-GTTACAAGTTAAGACTCAATTTTAAAAAATTATGAAAATGTCCCTA-AG
62 ATAAAAGCGGACC-CGGTGACAACCTAGGAGTCTGTTTTAAAAAATTATGAAAAT-ACCCTAGA-
** * *
64117 GGATACCTTTAACGTAAAAGTA-CCCGA-TA
124 GGATACCTTCGACGTAAAAGTATCCCAACAA
* * *
64146 CCCTTAAAGGACTTAAAAAGAATTATAG-AGGG-TGAACCTGTCCTAAATGCCCACCTTCAGCAT
1 CCC-TAAAGGACTTAAAAAG-ACTAGAGAAGGGATGAACCTATCCTAAATGCCCACCTTCAGCAT
* * * * * * *
64209 GAAAGCAGACCCGGTGATAACCTAGGACTCTATTTTAAAAATTTATGAAAATACCCTTAGGGGAT
64 AAAAGCGGACCCGGTGACAACCTAGGAGTCTGTTTTAAAAAATTATGAAAATACCC-TAGAGGAT
* * * * *
64274 ACCTTTGACGTGAAAGTATCTCAATAC
128 ACCTTCGACGTAAAAGTATCCCAACAA
* * * * *
64301 CCCTAAAGGACTTTAAAAGGACTATAAAAAAGG-TGAACCTATCCTAAA-GACCTACCTTCAGCA
1 CCCTAAAGGAC-TTAAAAAGACTA-GAGAAGGGATGAACCTATCCTAAATG-CCCACCTTCAGCA
* * * * * *
64364 TAAAAGCGAACCCGGTGATAACTTAGGAGTCGGTTTTAAAAAATCATGAAAATACCCCTAGGGGA
63 TAAAAGCGGACCCGGTGACAACCTAGGAGTCTGTTTTAAAAAATTATGAAAATA-CCCTAGAGGA
* * * ***
64429 TATCTTCGACGTAGAAGTA-CCCGATGC
127 TACCTTCGACGTAAAAGTATCCCAACAA
64456 CCCTAAAGGACTTCAAAAAGA
1 CCCTAAAGGACTT-AAAAAGA
64477 TTTTTAAAGT
Statistics
Matches: 648, Mismatches: 111, Indels: 72
0.78 0.13 0.09
Matches are distributed among these distances:
152 4 0.01
153 90 0.14
154 52 0.08
155 250 0.39
156 245 0.38
157 7 0.01
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (154 bp):
CCCTAAAGGACTTAAAAAGACTAGAGAAGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAA
AAGCGGACCCGGTGACAACCTAGGAGTCTGTTTTAAAAAATTATGAAAATACCCTAGAGGATACC
TTCGACGTAAAAGTATCCCAACAA
Found at i:64097 original size:311 final size:307
Alignment explanation
Indices: 63494--64371 Score: 733
Period size: 311 Copynumber: 2.8 Consensus size: 307
63484 AAACGCCCAT
* * * * * *
63494 AGGGAATACCTTTAACATAAAAGTATCTGATACCCCTAAAAGACTTAAAAAGGATAGAAAT-GGC
1 AGGG-ATACCTTCAACAAAAAAGTACCCGATA-CCCTAAAGGACTTAAAAA-GATAGAGATAGG-
* * *** * * *
63558 ATGGACCTATCCTAAATGCCCACCTTCGACATAAAAGCGGACTTGGTGACAACCTAGGAGTTGTT
62 ATGAACCTATCCTAAATGCCCACCTTCGACAAAAAAAAAGACTCGGTGACAACCTAAGAGTTGGT
* ** *
63623 TCTAAAAAATTATAAAATGTCCCTACGAGTATACCTTCGACGTAAAAGTATCCCAACAACCCTAA
127 TCTAAAAAATTAGAAAATACCCCTACGAGGATACCTTCGACGTAAAAGTATCCCAACAACCCTAA
* *
63688 AGGATTTAAAAAGACTAGAGAAGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCGG
192 AGGACTTAAAAAGACTAGAGAAGGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAAGCGG
* ***
63753 ACCTAGTGACAACCTAGGAATTGGTTCTAAAAAATTACAAAAAT-ACCCTTA
257 ACCTAGTGACAACCTAAGAATCAATTCTAAAAAATTACAAAAATGACCC-TA
* * *
63804 TAGGTATACCTTCGACAAAAAAGTATCCTGGCA-ACCCTAAAGGACTTAAAAAGACTAGAGATAG
1 -AGGGATACCTTCAACAAAAAAGTA-CC-CG-ATACCCTAAAGGACTTAAAAAGA-TAGAGATAG
63868 GATGAACCTATCCTAAATGCCCACCTTCGACAAAAAAAAAGACTCGGTGACAACCTAAGAGTTGG
61 GATGAACCTATCCTAAATGCCCACCTTCGACAAAAAAAAAGACTCGGTGACAACCTAAGAGTTGG
* * * ***
63933 TTCTAATAAATTACGAAAATACCCCTA-TAGGATACCTTCGACGTGAAAGTATCCC-TGTACCCT
126 TTCTAAAAAATTA-GAAAATACCCCTACGAGGATACCTTCGACGTAAAAGTATCCCAACAACCC-
** * * * * *
63996 TAATA-GACTTAAAAAGGTTTA-A-AATGGGATGAACCTATCCTATATATCTATCTTCGGCATAA
189 TAA-AGGACTTAAAAA-GACTAGAGAA-GGGATGAACCTATCCTAAATACCCACCTTCAGCATAA
* ** * * ** *
64058 AAGCGGACC-ACGTTACAAGTTAAGACTCAATTTTAAAAAATTATGAAAATGTCCCTA
251 AAGCGGACCTA-GTGACAACCTAAGAATCAATTCTAAAAAATTACAAAAATGACCCTA
* ** * *
64115 AGGGATACCTTTAACGTAAAAGTACCCGATACCCTTAAAGGACTTAAAAAGAATTATAG--AGGG
1 AGGGATACCTTCAACAAAAAAGTACCCGATACCC-TAAAGGACTTAAAAAG-A-TAGAGATAGGA
* ** ** * * * * *
64178 TGAACCTGTCCTAAATGCCCACCTTC-AGCATGAAAGCAGACCCGGTGATAACCTAGGACTCT-A
63 TGAACCTATCCTAAATGCCCACCTTCGA-CAAAAAAAAAGACTCGGTGACAACCTAAGAGT-TGG
* * * * * * * * *
64241 TTTTAAAAATTTATGAAAATACCCTTA-GGGGATACCTTTGACGTGAAAGTATCTCAATACCCCT
126 TTCTAAAAAATTA-GAAAATACCCCTACGAGGATACCTTCGACGTAAAAGTATCCCAACAACCCT
* * * * * *
64305 AAAGGACTTTAAAAGGACTATAAAAAAGG-TGAACCTATCCTAAAGACCTACCTTCAGCATAAAA
190 AAAGGAC-TTAAAAAGACTA-GAGAAGGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAA
64369 GCG
253 GCG
64372 AACCCGGTGA
Statistics
Matches: 456, Mismatches: 88, Indels: 48
0.77 0.15 0.08
Matches are distributed among these distances:
307 3 0.01
308 112 0.25
309 61 0.13
310 53 0.12
311 205 0.45
312 21 0.05
313 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.24
Consensus pattern (307 bp):
AGGGATACCTTCAACAAAAAAGTACCCGATACCCTAAAGGACTTAAAAAGATAGAGATAGGATGA
ACCTATCCTAAATGCCCACCTTCGACAAAAAAAAAGACTCGGTGACAACCTAAGAGTTGGTTCTA
AAAAATTAGAAAATACCCCTACGAGGATACCTTCGACGTAAAAGTATCCCAACAACCCTAAAGGA
CTTAAAAAGACTAGAGAAGGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAAGCGGACCT
AGTGACAACCTAAGAATCAATTCTAAAAAATTACAAAAATGACCCTA
Found at i:64475 original size:156 final size:154
Alignment explanation
Indices: 63472--64475 Score: 624
Period size: 156 Copynumber: 6.5 Consensus size: 154
63462 CTAAGTTCAA
** * * * * * * * *
63472 AAAAAATTATGAAAACGCCCATAGGGAATACCTTTAACATAAAAGTATCTGATACCCCTAAAAGA
1 AAAAAATTATGAAAATACCCCTAGGGGATACCTTTGACGTAGAAGTACCCGATACCCCTAAAGGA
* * * *
63537 CTTAAAAAGG-A-TAGAAATGGCATGGACCTATCCTAAATGCCCACCTTC-GACATAAAAGCGGA
66 CTTAAAAAGGAATTAAAAAAGG--TGAACCTATCCTAAATGCCCACCTTCAG-CATAAAAGCAGA
** * * *
63599 CTTGGTGACAACCTAGGAGTTG-TTTCT
128 CCCGGTGATAACCTAGGACTCGATTT-T
** * * * * * * *
63626 AAAAAATTAT-AAAATGTCCCTACGAGTATACCTTCGACGTAAAAGTATCCCAACAACCCTAAAG
1 AAAAAATTATGAAAATACCCCTA-GGGGATACCTTTGACGTAGAAGTA-CCCGATACCCCTAAAG
* * * * *
63690 GATTTAAAAA-G-ACTAGAGAAGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCGG
64 GACTTAAAAAGGAATTA-AAAAAGG-TGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCAG
** * * * * *
63753 ACCTAGTGACAACCTAGGAATTGGTTCT
127 ACCCGGTGATAACCTAGGACTCGATTTT
** * * * * ** * * ** *
63781 AAAAAATTACAAAAATACCCTTATAGGTATACCTTCGACAAAAAAGTATCCTGGCAACCCTAAAG
1 AAAAAATTATGAAAATACCCCTA-GGGGATACCTTTGACGTAGAAGTA-CCCGATACCCCTAAAG
* * * * **
63846 GACTTAAAAA-G-ACTAGAGATAGGATGAACCTATCCTAAATGCCCACCTTC-GACAAAAAAAAA
64 GACTTAAAAAGGAATTA-AAAAAGG-TGAACCTATCCTAAATGCCCACCTTCAG-CATAAAAGCA
* * * * * * *
63908 GACTCGGTGACAACCTAAGAGTTGGTTCT
126 GACCCGGTGATAACCTAGGACTCGATTTT
* * ** * *
63937 AATAAATTACGAAAATACCCCTATAGGATACCTTCGACGT-GAAAGTATCCCTG-TACCCTTAAT
1 AAAAAATTATGAAAATACCCCTAGGGGATACCTTTGACGTAG-AAGTA-CCC-GATACCCCTAA-
* ** * ** * * * *
64000 A-GACTTAAAAAGG-TTTAAAATGGGATGAACCTATCCTATATATCTATCTTCGGCATAAAAGCG
62 AGGACTTAAAAAGGAATTAAAAAAGG-TGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCA
* * ** * *
64063 GACCAC-GTTACAAGTTAAGACTCAATTTT
126 GACC-CGGTGATAACCTAGGACTCGATTTT
** * * * *
64092 AAAAAATTATGAAAATGTCCCTAAGGGATACCTTTAACGTAAAAGTACCCGATACCCTTAAAGGA
1 AAAAAATTATGAAAATACCCCTAGGGGATACCTTTGACGTAGAAGTACCCGATACCCCTAAAGGA
* * * * *
64157 CTTAAAAA-GAATTATAGAGGGTGAACCTGTCCTAAATGCCCACCTTCAGCATGAAAGCAGACCC
66 CTTAAAAAGGAATTAAAAAAGGTGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCAGACCC
*
64221 GGTGATAACCTAGGACTCTATTTT
131 GGTGATAACCTAGGACTCGATTTT
* * * *
64245 AAAAATTTATGAAAATACCCTTAGGGGATACCTTTGACGT-GAAAGTATCTCAATACCCCTAAAG
1 AAAAAATTATGAAAATACCCCTAGGGGATACCTTTGACGTAG-AAGTA-CCCGATACCCCTAAAG
* * *
64309 GACTTTAAAAGGACTATAAAAAAGGTGAACCTATCCTAAA-GACCTACCTTCAGCATAAAAGC-G
64 GACTTAAAAAGGAAT-TAAAAAAGGTGAACCTATCCTAAATG-CCCACCTTCAGCATAAAAGCAG
* * *
64372 AACCCGGTGATAACTTAGGAGTCGGTTTT
127 -ACCCGGTGATAACCTAGGACTCGATTTT
* * * *
64401 AAAAAATCATGAAAATACCCCTAGGGGATATCTTCGACGTAGAAGTACCCGATGCCCCTAAAGGA
1 AAAAAATTATGAAAATACCCCTAGGGGATACCTTTGACGTAGAAGTACCCGATACCCCTAAAGGA
64466 CTTCAAAAAG
66 CTT-AAAAAG
64476 ATTTTTAAAG
Statistics
Matches: 682, Mismatches: 141, Indels: 52
0.78 0.16 0.06
Matches are distributed among these distances:
152 1 0.00
153 101 0.15
154 82 0.12
155 236 0.35
156 261 0.38
157 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.24
Consensus pattern (154 bp):
AAAAAATTATGAAAATACCCCTAGGGGATACCTTTGACGTAGAAGTACCCGATACCCCTAAAGGA
CTTAAAAAGGAATTAAAAAAGGTGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCAGACCC
GGTGATAACCTAGGACTCGATTTT
Found at i:70241 original size:24 final size:23
Alignment explanation
Indices: 70205--70272 Score: 73
Period size: 24 Copynumber: 2.9 Consensus size: 23
70195 GAGTTCCCTT
** *
70205 AAAAAAATGACAAAAAAAAAACC
1 AAAAAAAACACAAAAAAAAAAAC
*
70228 AAAAGTAAACACAAAAAAACAAAAC
1 AAAA-AAAACACAAAAAAA-AAAAC
*
70253 AAAAAAAACACACAAAAAAA
1 AAAAAAAACACAAAAAAAAA
70273 GTGTAAAGGC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
23 6 0.16
24 23 0.62
25 8 0.22
ACGTcount: A:0.79, C:0.15, G:0.03, T:0.03
Consensus pattern (23 bp):
AAAAAAAACACAAAAAAAAAAAC
Found at i:70252 original size:15 final size:14
Alignment explanation
Indices: 70234--70272 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
70224 AACCAAAAGT
70234 AAACACAAAAAAACA
1 AAACA-AAAAAAACA
70249 AAACAAAAAAAAC-
1 AAACAAAAAAAACA
*
70262 ACACAAAAAAA
1 AAACAAAAAAA
70273 GTGTAAAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.43
14 8 0.35
15 5 0.22
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (14 bp):
AAACAAAAAAAACA
Found at i:70252 original size:26 final size:25
Alignment explanation
Indices: 70214--70272 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
70204 TAAAAAAATG
* *
70214 ACAAAAAAAAAACCAAAAGTAAACAC
1 ACAAAAAAAAAAACAAAA-AAAACAC
*
70240 A-AAAAAACAAAACAAAAAAAACAC
1 ACAAAAAAAAAAACAAAAAAAACAC
70264 ACAAAAAAA
1 ACAAAAAAA
70273 GTGTAAAGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 7 0.25
25 20 0.71
26 1 0.04
ACGTcount: A:0.80, C:0.17, G:0.02, T:0.02
Consensus pattern (25 bp):
ACAAAAAAAAAAACAAAAAAAACAC
Found at i:70539 original size:18 final size:16
Alignment explanation
Indices: 70516--70573 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 16
70506 TTTTCCAAAC
*
70516 ACAAAAAAAGAGAGAAAA
1 ACAAAAAAA-A-AAAAAA
*
70534 ACAAAAAAAACAAAAA
1 ACAAAAAAAAAAAAAA
70550 ACAACAAAAAAAACAAAA
1 ACAA-AAAAAAAA-AAAA
70568 ACAAAA
1 ACAAAA
70574 CAGAAAATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 8 0.23
17 10 0.29
18 17 0.49
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (16 bp):
ACAAAAAAAAAAAAAA
Found at i:70542 original size:9 final size:9
Alignment explanation
Indices: 70530--70568 Score: 69
Period size: 9 Copynumber: 4.2 Consensus size: 9
70520 AAAAAGAGAG
70530 AAAAACAAA
1 AAAAACAAA
70539 AAAAACAAA
1 AAAAACAAA
70548 AAACAACAAA
1 AAA-AACAAA
70558 AAAAACAAA
1 AAAAACAAA
70567 AA
1 AA
70569 CAAAACAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 20 0.69
10 9 0.31
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Found at i:70542 original size:19 final size:18
Alignment explanation
Indices: 70530--70568 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
70520 AAAAAGAGAG
70530 AAAAACAAAAAAAACAAA
1 AAAAACAAAAAAAACAAA
70548 AAACAACAAAAAAAACAAA
1 AAA-AACAAAAAAAACAAA
70567 AA
1 AA
70569 CAAAACAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAACAAAAAAAACAAA
Found at i:70562 original size:12 final size:11
Alignment explanation
Indices: 70530--70580 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
70520 AAAAAGAGAG
70530 AAAAACAAAAA-
1 AAAAA-AAAAAC
*
70541 AAACAAAAAAC
1 AAAAAAAAAAC
70552 AACAAAAAAAAC
1 AA-AAAAAAAAC
*
70564 AAAAACAAAAC
1 AAAAAAAAAAC
70575 AGAAAA
1 A-AAAA
70581 TCTCGGTGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 5 0.15
11 15 0.44
12 14 0.41
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:71643 original size:31 final size:30
Alignment explanation
Indices: 71577--72076 Score: 334
Period size: 30 Copynumber: 15.7 Consensus size: 30
71567 ATACCTTCTT
* * **
71577 AAAGTCCAAGACTCAGTGGCATTTTGTCCC
1 AAAGTCCACGACTCAGTGGCATTTTTTTTC
71607 AAAGTCCACGACTCAGTGGCATTTTTTTTCC
1 AAAGTCCACGACTCAGTGGCATTTTTTTT-C
* * *
71638 AAAGTCCACAACTCAGTGGCAATCTCTTTTC
1 AAAGTCCACGACTCAGTGGC-ATTTTTTTTC
*
71669 AAAGTCCACGACTCAGTGGCATATCTTTCCTTC
1 AAAGTCCACGACTCAGTGGCAT-T-TTT-TTTC
* * * *
71702 AAAGTCCACGACTCAATGGCGTCCCTTTTTCCTG
1 AAAGTCCACGACTCAGTGGCAT---TTTTT-TTC
* * * *
71736 TAAGTCCACGACTCAGTGGTATCTCTTTTC
1 AAAGTCCACGACTCAGTGGCATTTTTTTTC
* * *
71766 TAAGTCCACGACTCCGTGGCACCTTTTTCTTC
1 AAAGTCCACGACTCAGTGGCA--TTTTTTTTC
* * *
71798 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTCTTC
1 AAAGTCCACGACTCAGTGGCA----TTT-TTT-TTC
* * * *
71834 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
1 AAAGTCCACGACTCAGTGGCA-T-TTTTT--TTC
* * * *
71868 AAAGCCCACAACTCTGTGGCACTTTTTTTTTT
1 AAAGTCCACGACTCAGTGGCA--TTTTTTTTC
*
71900 AAAGTCCACAACTCAGTGGCATCTTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAT-TTTTT-TTC
* * *
71932 AAAAGTCCATGACTCAGTGGCATTTTGTCTC
1 -AAAGTCCACGACTCAGTGGCATTTTTTTTC
* * *
71963 AAAGTCCATGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATTTTTTTTC
*
71993 AAAGTCCACGACTCAGTGGCATCATTTTCTTC
1 AAAGTCCACGACTCAGTGGCAT--TTTTTTTC
* * * **
72025 AAAGTTCATGACTTAGTGGCATCTTTCCTTC
1 AAAGTCCACGACTCAGTGGCAT-TTTTTTTC
* *
72056 AAAGTCCACTACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
72077 CCCTTTTTCC
Statistics
Matches: 387, Mismatches: 61, Indels: 43
0.79 0.12 0.09
Matches are distributed among these distances:
30 99 0.26
31 73 0.19
32 85 0.22
33 47 0.12
34 55 0.14
35 4 0.01
36 24 0.06
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATTTTTTTTC
Found at i:71838 original size:36 final size:36
Alignment explanation
Indices: 71771--71930 Score: 180
Period size: 32 Copynumber: 4.7 Consensus size: 36
71761 TTTTCTAAGT
*
71771 CCACGACTCCGTGGCACC---TT-TTTCTTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTCTTCAAAGC
71803 CCACAACTCCGTGGCACCTTTTTCTTTCTTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTCTTCAAAGC
*
71839 CCACAACTCCGTGGCACTCTTTTTC---CTTTAAAGC
1 CCACAACTCCGTGGCAC-CTTTTTCTTTCTTCAAAGC
* *
71873 CCACAACTCTGTGGCA-CTTTTT-TTT-TT-AAAGT
1 CCACAACTCCGTGGCACCTTTTTCTTTCTTCAAAGC
* *
71905 CCACAACTCAGTGGCATCTTTTTCTT
1 CCACAACTCCGTGGCACCTTTTTCTT
71931 CAAAAGTCCA
Statistics
Matches: 113, Mismatches: 5, Indels: 18
0.83 0.04 0.13
Matches are distributed among these distances:
32 42 0.37
33 8 0.07
34 25 0.22
35 2 0.02
36 29 0.26
37 7 0.06
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (36 bp):
CCACAACTCCGTGGCACCTTTTTCTTTCTTCAAAGC
Found at i:71877 original size:34 final size:33
Alignment explanation
Indices: 71575--72286 Score: 394
Period size: 34 Copynumber: 22.1 Consensus size: 33
71565 AAATACCTTC
* *
71575 TTAAAGTCCA-AGACTCAGTGGCAT-TTTGTCC-
1 TTAAAGTCCACA-ACTCCGTGGCATCTTTTTCCT
* * *
71606 -CAAAGTCCACGACTCAGTGGCAT-TTTTT--T
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* *
71635 TCCAAAGTCCACAACTCAGTGGCAATCTCTTTT-C-
1 T-TAAAGTCCACAACTCCGTGGC-ATCT-TTTTCCT
* * * *
71669 --AAAGTCCACGACTCAGTGGCATATCTTTCCT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* * ** *
71700 TCAAAGTCCACGACTCAATGGCGTCCCTTTTTCCT
1 TTAAAGTCCACAACTCCGTGGCAT--CTTTTTCCT
* * * *
71735 GT-AAGTCCACGACTCAGTGGTATCTCTTTT-C-
1 TTAAAGTCCACAACTCCGTGGCATCT-TTTTCCT
* *
71766 -T-AAGTCCACGACTCCGTGGCACCTTTTT-CT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* * *
71796 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTCT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTC---CT
* *
71832 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTAAAGTCCACAACTCCGTGGCA-TCTTTTTCCT
* * **
71866 TTAAAGCCCACAACTCTGTGGCA-CTTTTTTTT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
*
71898 TTAAAGTCCACAACTCAGTGGCATCTTTTT-CT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* ** * *
71930 TCAAAAGTCCATGACTCAGTGGCAT-TTTGT-C-
1 T-TAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* ** * *
71961 TCAAAGTCCATGACTCAGTGGCAT-TTTGT-C-
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* * * *
71991 TCAAAGTCCACGACTCAGTGGCATCATTTT-CT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* * ** **
72023 TCAAAGTTCATGACTTAGTGGCATC--TTTCCT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* * *
72054 TCAAAGTCCACTACTCCGTGGCACCCTTTTTCCCT
1 TTAAAGTCCACAACTCCGTGGCA-TCTTTTT-CCT
* *
72089 TTTAAGTCCACAACTCCGTGGCATCCTTGTTCCT
1 TTAAAGTCCACAACTCCGTGGCAT-CTTTTTCCT
* ** *
72123 TTTAAGTCCACAACTATGTGGCATCCTTGTTCCT
1 TTAAAGTCCACAACTCCGTGGCAT-CTTTTTCCT
* *
72157 TTTAAGTCCACAACTCCGTGGCATCCTTGTTCCT
1 TTAAAGTCCACAACTCCGTGGCAT-CTTTTTCCT
* *
72191 TTTAAGTCCACAACTCCGTGGCATCCTTGTTCCT
1 TTAAAGTCCACAACTCCGTGGCAT-CTTTTTCCT
* * *
72225 TTTAAGTCCACAATTTCGTGGCA-C-----CCT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
* *
72252 TTTAAGTCCACAACTCCGTGGCATCTTTCTCCT
1 TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
72285 TT
1 TT
72287 TCAAAAGCCC
Statistics
Matches: 582, Mismatches: 60, Indels: 76
0.81 0.08 0.11
Matches are distributed among these distances:
27 24 0.04
28 1 0.00
29 8 0.01
30 103 0.18
31 64 0.11
32 89 0.15
33 56 0.10
34 170 0.29
35 35 0.06
36 25 0.04
37 7 0.01
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.34
Consensus pattern (33 bp):
TTAAAGTCCACAACTCCGTGGCATCTTTTTCCT
Found at i:72260 original size:27 final size:27
Alignment explanation
Indices: 72222--72274 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
72212 CATCCTTGTT
* *
72222 CCTTTTAAGTCCACAATTTCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
72249 CCTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCA
72275 TCTTTCTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:72394 original size:21 final size:21
Alignment explanation
Indices: 72370--72437 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
72360 ACATAGCTGG
72370 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* *
72391 CCTTTAAGTC--CA-ATATGGCTGG
1 CCTTGAA-TCAGCATAT-TGGC--A
72413 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
72434 CCTT
1 CCTT
72438 TATCTTTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 12 0.33
22 8 0.22
23 6 0.17
24 2 0.06
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:72428 original size:22 final size:22
Alignment explanation
Indices: 72365--72428 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
72355 GTCCAACATA
72365 GCTGGCCTTGAATCAGCATATTG
1 GCTGGCCTTGAATCAGCATA-TG
* *
72388 GC--ACCTTTAAGTC--CAATATG
1 GCTGGCCTTGAA-TCAGC-ATATG
72408 GCTGGCCTTGAATCAGCATAT
1 GCTGGCCTTGAATCAGCATAT
72429 TGGCACCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 13
0.65 0.08 0.27
Matches are distributed among these distances:
20 5 0.16
21 11 0.35
22 12 0.39
23 3 0.10
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (22 bp):
GCTGGCCTTGAATCAGCATATG
Found at i:72449 original size:92 final size:92
Alignment explanation
Indices: 72337--73005 Score: 946
Period size: 92 Copynumber: 7.0 Consensus size: 92
72327 CACAAGTTGG
* ** *
72337 TGGCACCTTTAGCTTTAAGTCCAACATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCC
1 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
*
72402 AATATGGCTGGCCTTGAATCAGCATAT
66 AATATAGCTGGCCTTGAATCAGCATAT
*
72429 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCATCTCACCTTTA
1 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CACCTTTA
72494 AGTCCAATATAGCTGGCCTTGAATCAGCATAT
61 AGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
72526 TGGCACCTTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
1 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
72591 AATATAGCTGGCCTTGAATCAGCATAT
66 AATATAGCTGGCCTTGAATCAGCATAT
* *
72618 TGGCACATTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
1 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
72683 AATATAGCTGGCCTTGAATCAGCATAT
66 AATATAGCTGGCCTTGAATCAGCATAT
* * * *
72710 TGGCACC-TTGTCTTTAAGACCAATGTCGCTGGCCTTGACTCAGCACATTGGCACCTCACCTTTA
1 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CACCTTTA
*
72774 AGCCCAATATAGCTGGCCTTGAATCAGCATAT
61 AGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
72806 TGGCACCTTCATCTTTAAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTT
1 TGGCACCTTTATCTTT-AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CACCTTT
*
72871 AAGTCCAATATAGTTGGCCTTGAATCAGCATAT
60 AAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
72904 TGG-AGCCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TGGCA-CCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
* *
72968 TAAGTCCAATATTGCTGGCCTTGACTCAGCATAT
59 TAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
73002 TGGC
1 TGGC
73006 GCTTTCATAA
Statistics
Matches: 529, Mismatches: 28, Indels: 33
0.90 0.05 0.06
Matches are distributed among these distances:
91 39 0.07
92 186 0.35
96 47 0.09
97 131 0.25
98 126 0.24
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (92 bp):
TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
AATATAGCTGGCCTTGAATCAGCATAT
Found at i:72464 original size:49 final size:49
Alignment explanation
Indices: 72337--73005 Score: 826
Period size: 49 Copynumber: 14.1 Consensus size: 49
72327 CACAAGTTGG
* *
72337 TGGCACCTTTAGCTTTAAGTCCAACATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
72386 TGGCA-C-----CTTTAAGTCCAATATGGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72429 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72478 TGGCATC-TCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72526 TGGCACCTTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
72575 TGGCA-C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * * *
72618 TGGCACATTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
72667 TGGCA-C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * * * * *
72710 TGGCACC-TTGTCTTTAAGACCAATGTCGCTGGCCTTGACTCAGCACAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72758 TGGCACC-TCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72806 TGGCACCTTCATCTTTAAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTTATCTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72856 TGGCACC-TCACCTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72904 TGG-AGCCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
1 TGGCA-CCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72953 TGGCACCTTCATCTTTAAGTCCAATATTGCTGGCCTTGACTCAGCATAT
1 TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
73002 TGGC
1 TGGC
73006 GCTTTCATAA
Statistics
Matches: 541, Mismatches: 56, Indels: 46
0.84 0.09 0.07
Matches are distributed among these distances:
43 120 0.22
44 2 0.00
47 1 0.00
48 158 0.29
49 222 0.41
50 38 0.07
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (49 bp):
TGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
Found at i:72657 original size:189 final size:188
Alignment explanation
Indices: 72337--73005 Score: 992
Period size: 189 Copynumber: 3.5 Consensus size: 188
72327 CACAAGTTGG
** *
72337 TGGCACCTTTAGCTTTAAGTCCAACATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCC
1 TGGCACCTTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
*
72402 AATATGGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTG
66 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTG
*
72467 AATTAGCACATTGGCATCTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
131 AATCAGCACATTGGCA-CTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
72526 TGGCACCTTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
1 TGGCACCTTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
* *
72591 AATATAGCTGGCCTTGAATCAGCATATTGGCACATTTAGCTTTAAGTCCAATGTAGCTGGCCTTG
66 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTG
72656 AATCAGCACATTGG----CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
131 AATCAGCACATTGGCACTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* * *
72710 TGGCACC-TT-GTCTTTAAGACCAATGTCGCTGGCCTTGACTCAGCACATTGGCACCTCACCTTT
1 TGGCACCTTTAG-CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CACCTTT
* *
72773 AAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAAGTCCAATGTAGCT
60 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT-AAGTCCAATGTAGCT
*
72838 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATA
124 GGCCTTGAATCAGCACATTGGCA-CTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
72903 T
188 T
* *
72904 TGG-AGCCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TGGCA-CCTTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
* *
72968 TAAGTCCAATATTGCTGGCCTTGACTCAGCATATTGGC
59 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
73006 GCTTTCATAA
Statistics
Matches: 438, Mismatches: 21, Indels: 35
0.89 0.04 0.07
Matches are distributed among these distances:
182 1 0.00
183 39 0.09
184 47 0.11
188 52 0.12
189 173 0.39
190 2 0.00
193 1 0.00
194 45 0.10
195 40 0.09
196 38 0.09
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (188 bp):
TGGCACCTTTAGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTG
AATCAGCACATTGGCACTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
Found at i:72719 original size:21 final size:21
Alignment explanation
Indices: 72651--72719 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
72641 ATGTAGCTGG
*
72651 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCATATTGGCA
* ** *
72672 CCTTTAAGTCCAATATAGCTGG--
1 CCTTGAA-T-CAGCATA-TTGGCA
72694 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
72715 CCTTG
1 CCTTG
72720 TCTTTAAGAC
Statistics
Matches: 34, Mismatches: 9, Indels: 10
0.64 0.17 0.19
Matches are distributed among these distances:
19 3 0.09
20 5 0.15
21 12 0.35
22 7 0.21
23 4 0.12
24 3 0.09
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:73775 original size:19 final size:18
Alignment explanation
Indices: 73750--73817 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
73740 AATTCAACGA
73750 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
73768 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
73784 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
73800 TATTGTATCGATACATAA
1 T-TTGTATCGATACATAA
73818 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
18 1 0.02
19 27 0.63
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:73788 original size:32 final size:32
Alignment explanation
Indices: 73752--73814 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
73742 TTCAACGATT
*
73752 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
73784 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
73815 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:73789 original size:13 final size:13
Alignment explanation
Indices: 73771--73795 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73761 ACATAAGTGT
73771 TGTATCGATACAA
1 TGTATCGATACAA
73784 TGTATCGATACA
1 TGTATCGATACA
73796 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:79372 original size:41 final size:41
Alignment explanation
Indices: 79243--79372 Score: 93
Period size: 41 Copynumber: 3.1 Consensus size: 41
79233 TGAGATCAAG
*
79243 CCGATAGGTAAATAAAGGATAAA-AAGTTGACCGAGATTAAA
1 CCGATAGGTAAAT-AAGGATAAAGAAGTTGACCGAGATTAGA
* * * * ** * * * * * *
79284 TCAACAAGTCAACGAGGGGTAAAGAA-TTTACTCGAGACTGGG
1 CCGATAGGT-AAATAAGGATAAAGAAGTTGAC-CGAGATTAGA
*
79326 TCGATAGGTAAATAAGGATAAAGAAGTTGACCGAGATTAGA
1 CCGATAGGTAAATAAGGATAAAGAAGTTGACCGAGATTAGA
79367 CCGATA
1 CCGATA
79373 AGTTAACAAA
Statistics
Matches: 60, Mismatches: 25, Indels: 8
0.65 0.27 0.09
Matches are distributed among these distances:
41 40 0.67
42 20 0.33
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.20
Consensus pattern (41 bp):
CCGATAGGTAAATAAGGATAAAGAAGTTGACCGAGATTAGA
Found at i:79574 original size:168 final size:166
Alignment explanation
Indices: 79168--79929 Score: 654
Period size: 168 Copynumber: 4.5 Consensus size: 166
79158 CAGATAGGTA
* * * * * *
79168 AACAAAGGATAAAAAAGTTGATC-GAAATTGGACTAACAAGTCAACAAAATATAGAAAGAAGTAC
1 AACAAAGGATAAAGAAGTTGACCAG-GATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTAC
* * * * * * * * **
79232 TTGAGATCAAGCCGATAGGTAAATAAAGGATAAAAAGTTGACCGAGATTAAATCAACAAGTCAAC
65 CTGGGACCAAGCC-ACAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAATTGACAAGTCAAC
* * * *
79297 GAGGGGT-AAAGAATTTACTCGAGACTGGGTCGATAGGT
129 GAAGGATAAAAG-ATTTACTCGAGACTAGGTCGATGGGT
* * * * *
79335 AA-ATAAGGATAAAGAAGTTGACC-GAGATTAGACCGATAAGTTAACAAAAGATAGAAGGGAGTA
1 AACA-AAGGATAAAGAAGTTGACCAG-GATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTA
* *
79398 CCTGGGACCAAGCCACCAGGTGAATGAAGGATAACAAGTTAACCAAGATTAAACTGACAAGTCAA
64 CCTGGGACCAAGCCA-CAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAATTGACAAGTCAA
* * *
79463 TGAAGGATAAAAGATATACTCGAGACTAGGTCAATGGGT
128 CGAAGGATAAAAGATTTACTCGAGACTAGGTCGATGGGT
* * * * *
79502 GAACAAAAGATAAGGAAGTTGACCAGGATTGGACCGACAAGTTAACAAAAGATAGAAAGAAGTAC
1 -AACAAAGGATAAAGAAGTTGACCAGGATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTAC
* ** * * *
79567 TTGGGACCAAGATGATAGGTGAATGAAAGATAAAAAGTTAACCAGGATTAAATTGACAAGTCAAC
65 CTGGGACCAAG-CCACAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAATTGACAAGTCAAC
* * * * * *
79632 GAAGGGTAAAGGATTTACTTGGGACTAGGTCGTTGGTT
129 GAAGGATAAAAGATTTACTCGAGACTAGGTCGATGGGT
* * * *
79670 AAACAAAGGATAAAAAAGTTAACTAGGATTAGACTAACAAGTCAACAAAAGATAGAAAGAAGTAC
1 -AACAAAGGATAAAGAAGTTGACCAGGATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTAC
* * * * * **
79735 CTGGGACCAAGCTAACAAGTGAATGAAGGATAACAAGTTGATCGGGATTAAATTGACAAGTCAAC
65 CTGGGACCAAGC-CACAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAATTGACAAGTCAAC
* * * * ***
79800 AAAGGATAAAAAATTTAC-CGAGGACTGGGCCGGCAGGT
129 GAAGGATAAAAGATTTACTCGA-GACTAGGTCGATGGGT
* *** * * * * *
79838 AAACAAA-GATAAAGAAGTAGATTGGGATTGGACCGATAAGTCAACAAAAGATAAAAAAAAAAGT
1 -AACAAAGGATAAAGAAGTTGACCAGGATTAGACCAACAAGTCAACAAAAGAT--AGAAAGAAGT
* * *
79902 ACCTTGGATCAAGCCGACAAGTGAATGA
63 ACCTGGGACCAAGCC-ACAGGTGAATGA
79930 TGAATGAAGG
Statistics
Matches: 484, Mismatches: 99, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
166 2 0.00
167 165 0.34
168 282 0.58
169 35 0.07
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.19
Consensus pattern (166 bp):
AACAAAGGATAAAGAAGTTGACCAGGATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTACC
TGGGACCAAGCCACAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAATTGACAAGTCAACGA
AGGATAAAAGATTTACTCGAGACTAGGTCGATGGGT
Found at i:79613 original size:84 final size:84
Alignment explanation
Indices: 79198--79807 Score: 278
Period size: 84 Copynumber: 7.3 Consensus size: 84
79188 ATCGAAATTG
* * * * ** *
79198 GACTAACAAGTCAACAAAATATAGAAAGAAGTACTTGAGATCAAGCCGATAGGTAAAT-AAAGGA
1 GACTGACAAGTCAACAAAAGATAGAAAGAAGTACTTGGGACCAAGGTGATAGGTGAATGAAA-GA
*
79262 TAAAAAGTTGACC-GAGATTA
65 TAAAAAGTTAACCAG-GATTA
* * * ** * * * * ** * *
79282 -AATCAACAAGTCAACGAGGGGT--AAAGAATTTACTCGAGA-CTGGGTCGATAGGTAAAT-AAG
1 GACT-GACAAGTCAACAAAAGATAGAAAGAA-GTACTTGGGACCAAGGT-GATAGGTGAATGAAA
*
79342 GATAAAGAAGTTGACC-GAGATTA
63 GATAAA-AAGTTAACCAG-GATTA
* * * * * * ** * *
79365 GACCGATAAGTTAACAAAAGATAGAAGGGAGTACCTGGGACCAA-GCCACCAGGTGAATGAAGGA
1 GACTGACAAGTCAACAAAAGATAGAAAGAAGTACTTGGGACCAAGGTGA-TAGGTGAATGAAAGA
* *
79429 TAACAAGTTAACCAAGATTA
65 TAAAAAGTTAACCAGGATTA
* ** * * * * * * **
79449 AACTGACAAGTCAATGAAGGATA-AAAGATA-TACTCGAGA-CTAGGTCAATGGGTGAACAAAAG
1 GACTGACAAGTCAACAAAAGATAGAAAGA-AGTACTTGGGACCAAGGT-GATAGGTGAATGAAAG
* * *
79511 ATAAGGAAGTTGACCAGGATTG
64 ATAA-AAAGTTAACCAGGATTA
* * *
79533 GACCGACAAGTTAACAAAAGATAGAAAGAAGTACTTGGGACCAAGATGATAGGTGAATGAAAGAT
1 GACTGACAAGTCAACAAAAGATAGAAAGAAGTACTTGGGACCAAGGTGATAGGTGAATGAAAGAT
79598 AAAAAGTTAACCAGGATTA
66 AAAAAGTTAACCAGGATTA
* * * * * * ** * * * **
79617 AATTGACAAGTCAACGAAGGGTA-AAGGATTTACTTGGGA-CTAGGTCG-TTGGTTAAACAAAGG
1 GACTGACAAGTCAACAAAAGATAGAAAGAAGTACTTGGGACCAAGGT-GATAGGTGAATGAAA-G
*
79679 ATAAAAAAGTTAACTAGGATTA
64 AT-AAAAAGTTAACCAGGATTA
* * * * * * *
79701 GACTAACAAGTCAACAAAAGATAGAAAGAAGTACCTGGGACCAAGCTAACAAGTGAATGAAGGAT
1 GACTGACAAGTCAACAAAAGATAGAAAGAAGTACTTGGGACCAAGGTGATAGGTGAATGAAAGAT
* * * *
79766 AACAAGTTGATCGGGATTA
66 AAAAAGTTAACCAGGATTA
* * *
79785 AATTGACAAGTCAACAAAGGATA
1 GACTGACAAGTCAACAAAAGATA
79808 AAAAATTTAC
Statistics
Matches: 378, Mismatches: 124, Indels: 48
0.69 0.23 0.09
Matches are distributed among these distances:
82 29 0.08
83 91 0.24
84 188 0.50
85 56 0.15
86 14 0.04
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.19
Consensus pattern (84 bp):
GACTGACAAGTCAACAAAAGATAGAAAGAAGTACTTGGGACCAAGGTGATAGGTGAATGAAAGAT
AAAAAGTTAACCAGGATTA
Found at i:79807 original size:336 final size:335
Alignment explanation
Indices: 79194--79810 Score: 819
Period size: 336 Copynumber: 1.8 Consensus size: 335
79184 GTTGATCGAA
* * * *
79194 ATTGGACTAACAAGTCAACAAAATATAGAAAGAAGTACTTGAGATCAAGCCGATAGGTAAATAAA
1 ATTGGACCAACAAGTCAACAAAAGATAGAAAGAAGTACTTGAGACCAAGACGATAGGTAAATAAA
* * *
79259 GGATAAAAAGTTGACCGAGATTAAATCAACAAGTCAACGAGGGGTAAAGAATTTACTCGAGACTG
66 GGATAAAAAGTTAACCGAGATTAAATCAACAAGTCAACGAAGGGTAAAGAATTTACTCGAGACTA
* * * * * * *
79324 GGTCGATAGGTAAATAAGGATAAAGAAGTTGACCGAGATTAGACCGATAAGTTAACAAAAGATAG
131 GGTCGATAGGTAAAAAAGGATAAAAAAGTTAACAGAGATTAGACCAACAAGTCAACAAAAGATAG
* * * *
79389 AAGGGAGTACCTGGGACCAAGCCACCAGGTGAATGAAGGATAACAAGTTAACCAAGATTAAACTG
196 AAAGAAGTACCTGGGACCAAGCCAACAAGTGAATGAAGGATAACAAGTTAACCAAGATTAAACTG
**
79454 ACAAGTCAATGAAGGATAAAAGATATACTCGAGACTAGGTCAATGGGTGAACAAAAGATAAGGAA
261 ACAAGTCAACAAAGGATAAAAGATATACTCGAGACTAGGTCAATGGGTGAACAAAAGATAAGGAA
79519 GTTGACCAGG
326 GTTGACCAGG
* * * * *
79529 ATTGGACCGACAAGTTAACAAAAGATAGAAAGAAGTACTTGGGACCAAGATGATAGGTGAATGAA
1 ATTGGACCAACAAGTCAACAAAAGATAGAAAGAAGTACTTGAGACCAAGACGATAGGTAAAT-AA
** * * *
79594 A-GATAAAAAGTTAACC-AGGATTAAATTGACAAGTCAACGAAGGGTAAAGGATTTACTTGGGAC
65 AGGATAAAAAGTTAACCGA-GATTAAATCAACAAGTCAACGAAGGGTAAAGAATTTACTCGAGAC
* *
79657 TAGGTCG-TTGGTTAAACAAAGGATAAAAAAGTTAACTAG-GATTAGACTAACAAGTCAACAAAA
129 TAGGTCGATAGG-TAAA-AAAGGATAAAAAAGTTAAC-AGAGATTAGACCAACAAGTCAACAAAA
* * * **
79720 GATAGAAAGAAGTACCTGGGACCAAGCTAACAAGTGAATGAAGGATAACAAGTTGATCGGGATTA
191 GATAGAAAGAAGTACCTGGGACCAAGCCAACAAGTGAATGAAGGATAACAAGTTAACCAAGATTA
*
79785 AATTGACAAGTCAACAAAGGATAAAA
256 AACTGACAAGTCAACAAAGGATAAAA
79811 AATTTACCGA
Statistics
Matches: 239, Mismatches: 38, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
334 4 0.02
335 116 0.49
336 118 0.49
337 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.19
Consensus pattern (335 bp):
ATTGGACCAACAAGTCAACAAAAGATAGAAAGAAGTACTTGAGACCAAGACGATAGGTAAATAAA
GGATAAAAAGTTAACCGAGATTAAATCAACAAGTCAACGAAGGGTAAAGAATTTACTCGAGACTA
GGTCGATAGGTAAAAAAGGATAAAAAAGTTAACAGAGATTAGACCAACAAGTCAACAAAAGATAG
AAAGAAGTACCTGGGACCAAGCCAACAAGTGAATGAAGGATAACAAGTTAACCAAGATTAAACTG
ACAAGTCAACAAAGGATAAAAGATATACTCGAGACTAGGTCAATGGGTGAACAAAAGATAAGGAA
GTTGACCAGG
Found at i:79848 original size:335 final size:333
Alignment explanation
Indices: 79163--79890 Score: 836
Period size: 335 Copynumber: 2.2 Consensus size: 333
79153 CTAAGCAGAT
* * ** *
79163 AGGTAAACAAAGGATAAAAAAGTTGATCGAAATTGGACTAACAAGTCAACAAAATATAGAAAGAA
1 AGGTAAACAAA-GATAAAGAAGTTGATCG-GATTGGACCGACAAGTCAACAAAAGATAGAAAGAA
* * *
79228 GTACTTGAGATCAAGCCGATAGGTAAATAAAGGATAAAAAGTTGACCGAGATTAAATCAACAAGT
64 GTACTTGAGACCAAGACGATAGGTAAATAAAGGATAAAAAGTTAACCGAGATTAAATCAACAAGT
* * * * * *
79293 CAACGAGGGGTAAAGAATTTACTCGAGACTGGGTCGATAGGTAAATAAGGATAAAGAAGTTGACC
129 CAACGAAGGGTAAAGAATTTACTCGAGACTAGGTCGATAGGTAAAAAAGGATAAAAAAGTTAACA
* * * * * * *
79358 GAGATTAGACCGATAAGTTAACAAAAGATAGAAGGGAGTACCTGGGACCAAGCCACCAGGTGAAT
194 GAGATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTACCTGGGACCAAGCCAACAAGTGAAT
** *
79423 GAAGGATAACAAGTTAACCAAGATTAAACTGACAAGTCAATGAAGGATAAAAGATATACTCGAGA
259 GAAGGATAACAAGTTAACCAAGATTAAACTGACAAGTCAACAAAGGATAAAAAATATACTCGAGA
* *
79488 CTAGGTCAAT
324 CTAGGCCAAC
* * * * *
79498 GGGTGAACAAAAGATAAGGAAGTTGACCAGGATTGGACCGACAAGTTAACAAAAGATAGAAAGAA
1 AGGTAAAC-AAAGATAAAGAAGTTGATC-GGATTGGACCGACAAGTCAACAAAAGATAGAAAGAA
* * * **
79563 GTACTTGGGACCAAGATGATAGGTGAATGAAA-GATAAAAAGTTAACC-AGGATTAAATTGACAA
64 GTACTTGAGACCAAGACGATAGGTAAAT-AAAGGATAAAAAGTTAACCGA-GATTAAATCAACAA
* * * *
79626 GTCAACGAAGGGTAAAGGATTTACTTGGGACTAGGTCG-TTGGTTAAACAAAGGATAAAAAAGTT
127 GTCAACGAAGGGTAAAGAATTTACTCGAGACTAGGTCGATAGG-TAAA-AAAGGATAAAAAAGTT
* *
79690 AACTAG-GATTAGACTAACAAGTCAACAAAAGATAGAAAGAAGTACCTGGGACCAAGCTAACAAG
190 AAC-AGAGATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTACCTGGGACCAAGCCAACAAG
* * ** * *
79754 TGAATGAAGGATAACAAGTTGATCGGGATTAAATTGACAAGTCAACAAAGGATAAAAAATTTAC-
254 TGAATGAAGGATAACAAGTTAACCAAGATTAAACTGACAAGTCAACAAAGGATAAAAAATATACT
* **
79818 CGAGGACTGGGCCGGC
319 CGA-GACTAGGCCAAC
* * *
79834 AGGTAAACAAAGATAAAGAAGTAGATTGGGATTGGACCGATAAGTCAACAAAAGATA
1 AGGTAAACAAAGATAAAGAAGTTGA-TCGGATTGGACCGACAAGTCAACAAAAGATA
79891 AAAAAAAAAG
Statistics
Matches: 325, Mismatches: 59, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
334 4 0.01
335 180 0.55
336 140 0.43
337 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.19
Consensus pattern (333 bp):
AGGTAAACAAAGATAAAGAAGTTGATCGGATTGGACCGACAAGTCAACAAAAGATAGAAAGAAGT
ACTTGAGACCAAGACGATAGGTAAATAAAGGATAAAAAGTTAACCGAGATTAAATCAACAAGTCA
ACGAAGGGTAAAGAATTTACTCGAGACTAGGTCGATAGGTAAAAAAGGATAAAAAAGTTAACAGA
GATTAGACCAACAAGTCAACAAAAGATAGAAAGAAGTACCTGGGACCAAGCCAACAAGTGAATGA
AGGATAACAAGTTAACCAAGATTAAACTGACAAGTCAACAAAGGATAAAAAATATACTCGAGACT
AGGCCAAC
Found at i:80053 original size:42 final size:42
Alignment explanation
Indices: 79975--80092 Score: 112
Period size: 42 Copynumber: 2.8 Consensus size: 42
79965 GCAAATAAAG
* ** * ** **
79975 AGATGAAGAAGTCCCCTAGGTCTGAGCCGATAGGCAGACGGA
1 AGATGAAAAAGTCTTCTAGGTCTAAGCCGACGGGCAGACAAA
* * * *
80017 GGATGAAGAAGTC-TCTCGGGTCTAAGTCGACGGGCAGACAAA
1 AGATGAAAAAGTCTTCT-AGGTCTAAGCCGACGGGCAGACAAA
80059 AGATGAAAAAGTCTTCTAGGTCTAAGCCGACGGG
1 AGATGAAAAAGTCTTCTAGGTCTAAGCCGACGGG
80093 TAGGCAGTTG
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.03
42 56 0.92
43 3 0.05
ACGTcount: A:0.31, C:0.19, G:0.32, T:0.17
Consensus pattern (42 bp):
AGATGAAAAAGTCTTCTAGGTCTAAGCCGACGGGCAGACAAA
Found at i:83602 original size:20 final size:20
Alignment explanation
Indices: 83560--83613 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
83550 TTCTACGATT
* *
83560 TGTATCGATACAATTAGTGAA
1 TGTATCGATAC-ATAAATGAA
83581 TGTATCGATACATAAATGAA
1 TGTATCGATACATAAATGAA
*
83601 TGCATCGATACAT
1 TGTATCGATACAT
83614 GCCTAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAATGAA
Found at i:83684 original size:20 final size:20
Alignment explanation
Indices: 83659--83736 Score: 68
Period size: 20 Copynumber: 3.8 Consensus size: 20
83649 CTGCCAAGGA
*
83659 AATGTATCGATACATTAGTC
1 AATGTATCGATACATTACTC
* *
83679 AATGTATCGATATA-TGCTTAC
1 AATGTATCGATACATTAC-T-C
*
83700 AATTGTATCGATACATTTCTC
1 AA-TGTATCGATACATTACTC
* *
83721 ATTGTATTGATACATT
1 AATGTATCGATACATT
83737 CTGGACTTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
19 1 0.02
20 27 0.57
21 5 0.11
22 12 0.26
23 2 0.04
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (20 bp):
AATGTATCGATACATTACTC
Found at i:87486 original size:19 final size:19
Alignment explanation
Indices: 87462--87503 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
87452 TTTCTTGTGG
87462 CAACCTCGAACACACATCT
1 CAACCTCGAACACACATCT
87481 CAACCTCGAACACACATCT
1 CAACCTCGAACACACATCT
87500 CAAC
1 CAAC
87504 AAATTAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.38, C:0.43, G:0.05, T:0.14
Consensus pattern (19 bp):
CAACCTCGAACACACATCT
Found at i:91902 original size:52 final size:52
Alignment explanation
Indices: 91832--91952 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
91822 GAAAATTTAT
*
91832 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* * *
91884 TTGCATGTATTGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
91936 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
91953 AAGATCGGTG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:91965 original size:52 final size:52
Alignment explanation
Indices: 91832--91972 Score: 178
Period size: 52 Copynumber: 2.7 Consensus size: 52
91822 GAAAATTTAT
*
91832 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGC
* * *** *
91884 TTGCATGTATTGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
*
91936 CTGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
91973 ATGTATCGAT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 4 0.05
52 72 0.95
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:91979 original size:13 final size:13
Alignment explanation
Indices: 91961--91985 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91951 CAAAGATCGG
91961 TGTATCGATACAA
1 TGTATCGATACAA
91974 TGTATCGATACA
1 TGTATCGATACA
91986 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:92072 original size:33 final size:33
Alignment explanation
Indices: 92027--92093 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
92017 AGTAGCTTAA
92027 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* * ***
92060 ATTGTATTGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
92093 A
1 A
92094 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:93852 original size:19 final size:19
Alignment explanation
Indices: 93828--93866 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
93818 TCATCAGGAC
93828 AATTGTGTTTAGGTTATTT
1 AATTGTGTTTAGGTTATTT
93847 AATTGTGTTTAGGTTATTT
1 AATTGTGTTTAGGTTATTT
93866 A
1 A
93867 GGCTTAGCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (19 bp):
AATTGTGTTTAGGTTATTT
Found at i:96514 original size:94 final size:97
Alignment explanation
Indices: 96395--96598 Score: 245
Period size: 97 Copynumber: 2.1 Consensus size: 97
96385 AATAGGACTG
* * *
96395 GAGTATCCCCTCAGAGGAATAGGGTTGGAATAT-CCCAATAATAATAATTTAGGCAAAAAA-AGA
1 GAGTATCCCCTCAGAAGAATAGGGTTGGAATATCCCCAATAATAACAATTTAGGCAAAAAACAAA
* *
96458 TTT-AATCTTGACAAGTTTTAAAATGGGGTTA
66 TTTAAATCTTAACAAGTTTAAAAATGGGGTTA
* * * * * * * *
96489 GAGTATCCTCTCGGAAGAATGGGGTTGGAGTATCCCCGATGATGACAATTTAGGTAAAAAACAAA
1 GAGTATCCCCTCAGAAGAATAGGGTTGGAATATCCCCAATAATAACAATTTAGGCAAAAAACAAA
*
96554 TTTAAATCTTAACAAGTTTAAAAATGGGATT-
66 TTTAAATCTTAACAAGTTTAAAAATGGGGTTA
96585 GTAGTATCCCCTCA
1 G-AGTATCCCCTCA
96599 AAAAAAATGG
Statistics
Matches: 90, Mismatches: 16, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
94 28 0.31
95 22 0.24
96 6 0.07
97 34 0.38
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (97 bp):
GAGTATCCCCTCAGAAGAATAGGGTTGGAATATCCCCAATAATAACAATTTAGGCAAAAAACAAA
TTTAAATCTTAACAAGTTTAAAAATGGGGTTA
Found at i:96591 original size:97 final size:94
Alignment explanation
Indices: 96377--96622 Score: 251
Period size: 94 Copynumber: 2.6 Consensus size: 94
96367 TTTAATTTTT
* * * * * * *
96377 AGTTGAAAAATAGGACTGGAGTATCCCCTCAGAGGAATAGGGTTGGAATAT-CCCAATAATAATA
1 AGTTTAAAAATGGGA-TTGAGTATCCCCTCAGAAGAATGGGGTTGGAGTATCCCCAATAATAACA
* *
96441 ATTTAGGCAAAAAAAGATTTAATCTTGACA
65 ATTTAGGCAAAAAAAAATTTAATCTTAACA
* * * * * * *
96471 AGTTTTAAAATGGGGTTAGAGTATCCTCTCGGAAGAATGGGGTTGGAGTATCCCCGATGATGACA
1 AGTTTAAAAATGGGATT-GAGTATCCCCTCAGAAGAATGGGGTTGGAGTATCCCCAATAATAACA
*
96536 ATTTAGGTAAAAAACAAATTTAAATCTTAACA
65 ATTTAGGCAAAAAA-AAATTT-AATCTTAACA
* * *
96568 AGTTTAAAAATGGGATTGTAGTATCCCCTCAAAAAAAATGGAGTTGGAGTATCCC
1 AGTTTAAAAATGGGATTG-AGTATCCCCTC-AGAAGAATGGGGTTGGAGTATCCC
96623 AAAAATTAAT
Statistics
Matches: 122, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
93 1 0.01
94 39 0.32
95 22 0.18
96 6 0.05
97 34 0.28
98 20 0.16
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (94 bp):
AGTTTAAAAATGGGATTGAGTATCCCCTCAGAAGAATGGGGTTGGAGTATCCCCAATAATAACAA
TTTAGGCAAAAAAAAATTTAATCTTAACA
Found at i:110257 original size:52 final size:52
Alignment explanation
Indices: 110172--110296 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
110162 ATATGAAAAG
* *
110172 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
110224 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
110276 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
110297 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:110309 original size:52 final size:51
Alignment explanation
Indices: 110172--110316 Score: 211
Period size: 52 Copynumber: 2.8 Consensus size: 51
110162 ATATGAAAAG
*
110172 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
110224 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
110276 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
110317 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:110323 original size:13 final size:13
Alignment explanation
Indices: 110305--110329 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110295 CAAAGATCAG
110305 TGTATCGATACAA
1 TGTATCGATACAA
110318 TGTATCGATACA
1 TGTATCGATACA
110330 TGTGAGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:110400 original size:33 final size:33
Alignment explanation
Indices: 110358--110420 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
110348 GCTTAAATTG
110358 TATCGATACAAAAAAATATGTATCGATACATTA
1 TATCGATACAAAAAAATATGTATCGATACATTA
* ***
110391 TATCGATACAACATTTTATGTATCGATACA
1 TATCGATACAAAAAAATATGTATCGATACA
110421 AATCGTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (33 bp):
TATCGATACAAAAAAATATGTATCGATACATTA
Found at i:111363 original size:22 final size:22
Alignment explanation
Indices: 111298--111363 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 22
111288 GATGTCAATG
111298 TGCTGATTCAAGGCCAGCTATA
1 TGCTGATTCAAGGCCAGCTATA
*
111320 T--TGGACTTAAAGGTGCCA---ATA
1 TGCT-GA-TTCAA-G-GCCAGCTATA
111341 TGCTGATTCAAGGCCAGCTATA
1 TGCTGATTCAAGGCCAGCTATA
111363 T
1 T
111364 TGGACTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 18
0.62 0.04 0.34
Matches are distributed among these distances:
19 4 0.12
20 2 0.06
21 10 0.30
22 11 0.33
23 2 0.06
24 4 0.12
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (22 bp):
TGCTGATTCAAGGCCAGCTATA
Found at i:111375 original size:22 final size:22
Alignment explanation
Indices: 111307--111375 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
111297 GTGCTGATTC
111307 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
* ** *
111329 AAGGTGCCA-ATATGCT-GA-TTC
1 AA-G-GCCAGCTATATTGGACTTA
111350 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
111372 AAGG
1 AAGG
111376 TGAGGTGCCA
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 4 0.12
20 5 0.15
21 6 0.18
22 10 0.29
23 5 0.15
24 4 0.12
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (22 bp):
AAGGCCAGCTATATTGGACTTA
Found at i:111455 original size:49 final size:49
Alignment explanation
Indices: 111293--111845 Score: 697
Period size: 49 Copynumber: 11.7 Consensus size: 49
111283 AAAAGGATGT
*
111293 CAATGTGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
111336 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* **
111384 CAATGTGTTGATTCAAATCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
111433 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
111482 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
111525 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
111574 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT--A-A--AA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
111617 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
111666 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
111709 TAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
111758 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
111810 CAATATACTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
111846 GAAGGGTTGC
Statistics
Matches: 447, Mismatches: 35, Indels: 47
0.84 0.07 0.09
Matches are distributed among these distances:
43 146 0.33
44 4 0.01
45 3 0.01
46 4 0.01
47 3 0.01
48 46 0.10
49 203 0.45
52 38 0.09
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:111555 original size:92 final size:92
Alignment explanation
Indices: 111284--111796 Score: 749
Period size: 92 Copynumber: 5.5 Consensus size: 92
111274 AAGATGATAA
* * *
111284 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATATGCTGATT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATT
* *
111349 CAAGGCCAGCTATATTGGACTTAAAGGT
65 CAAGGCCAGCTACATTGGACTTAAAGAT
* * **
111377 -GAGGTGCCAATGTGTTGATTCAAATCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT----A--AAGGTGCCAATGTGC
*
111441 TGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
60 TGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * *
111474 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
111539 AAGGCCAGCTACATTGGACTTAAAGAT
66 AAGGCCAGCTACATTGGACTTAAAGAT
* * *
111566 GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATGTGCTGATTC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
111631 AAGGCCAGCTACATTGGACTTAAAGAT
66 AAGGCCAGCTACATTGGACTTAAAGAT
* * * * * *
111658 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCTAATGTGCTGATTC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
111723 AAGGCCAGCTACATTGGACTTAAAGAT
66 AAGGCCAGCTACATTGGACTTAAAGAT
*
111750 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
111797 ATGGAAAAGG
Statistics
Matches: 380, Mismatches: 33, Indels: 15
0.89 0.08 0.04
Matches are distributed among these distances:
91 33 0.09
92 265 0.70
94 1 0.00
95 1 0.00
97 44 0.12
98 36 0.09
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTC
AAGGCCAGCTACATTGGACTTAAAGAT
Found at i:111889 original size:33 final size:35
Alignment explanation
Indices: 111845--111913 Score: 124
Period size: 33 Copynumber: 2.0 Consensus size: 35
111835 TATTGGGCTT
111845 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
111879 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
111913 A
1 A
111914 TGGAGAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:111988 original size:34 final size:34
Alignment explanation
Indices: 111919--112541 Score: 644
Period size: 34 Copynumber: 18.8 Consensus size: 34
111909 AGGAATGGAG
*
111919 AAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--GAA
111953 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
111987 AAA-AGTGCCACGGAGTTGTGGGC-TTAGAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
112019 AAAGAGTGCCACGTAGTTGTGGGCTTT-AAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
112052 AAAGAGTGCCACGGAGTCGTGGAC-TTAAAAG--
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
*
112083 ---G-GTGCCACGGAGTTGTGGGC-TTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAGAA
* *
112113 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
112146 AAAGAGTGCCACGTAGTTGTGGGCTTT-AAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
112179 AAAGAGTGCCACGGAGTCGTGGAC-TTAAAAG--
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
112210 ---G-GTGCCACGGAGTTGTGGGC-TTAGAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
112239 AAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAG-A-GTGCCACGGAGTTGTGGGCTTT-AAAA--GAA
112278 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
112313 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAACAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAA-AGAA
*
112348 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-GAA
*
112382 AAA-AGTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
* *
112416 GAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
*
112450 GAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
* * *
112484 GAA-TGTGCCACGGAGTTGTGGGCTTT-AAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
* *
112516 AAAG-GTGCCACGAAGTTGTGGACTTT
1 AAAGAGTGCCACGGAGTTGTGGGCTTT
112542 GAGCAGAGAT
Statistics
Matches: 519, Mismatches: 36, Indels: 70
0.83 0.06 0.11
Matches are distributed among these distances:
27 43 0.08
28 5 0.01
32 42 0.08
33 130 0.25
34 180 0.35
35 72 0.14
36 11 0.02
37 29 0.06
38 1 0.00
39 6 0.01
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
Found at i:112089 original size:27 final size:27
Alignment explanation
Indices: 112051--112110 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
112041 GCTTTAAAGG
*
112051 AAAAGAGTGCCACGGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
* *
112078 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
*
112105 AGAAGG
1 AAAAGG
112111 AAAAAGAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.15, G:0.38, T:0.18
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTCGTGGACTT
Found at i:112148 original size:127 final size:129
Alignment explanation
Indices: 111952--112536 Score: 669
Period size: 127 Copynumber: 4.4 Consensus size: 129
111942 TTAAAAGGGA
* *
111952 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA-AGTGCCACGGAGTTGTGGGCTTAGAA
1 AAAAGGGTGCCACGGAGTTGTGGGC-TTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
*
112016 GGAAAAGAGTGCCACGTAGTTGTGGGCTTT-AAAGGAAAAGAGTGCCACGGAGTCGTGGAC-TT-
65 GGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAAAGAAAAGAGTGCCACGGAGTCGTGGACTTTG
112078 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAA
*
112143 GGAAAAGAGTGCCACGTAGTTGTGGGCTTT-AAAGGAAAAGAGTGCCACGGAGTCGTGGAC-TT-
65 GGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAAAGAAAAGAGTGCCACGGAGTCGTGGACTTTG
112205 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGG-AAAAGAAGGTGCCACGGAGTTGTGGGCTTTG
1 AAAAGGGTGCCACGGAGTTGTGGGCTTA-AAGGAAAAAG-A-GTGCCACGGAGTTGTGGGC-TT-
* * *
112269 AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAA-AGGTGCCACGGAGTTGTG
61 AGAA-GG-AAAAGAGTGCCACGTAGTTGTGGGCTTTAAAAAGAAAAGA-GTGCCACGGAGTCGTG
*
112333 GGCTTTG
123 GACTTTG
* *
112340 AAACAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA-AGTGCCACAGAGTTGTGGG
1 AAA-AG-----GGTGCCACGGAGTTGTGGGCTTAAAG--GAAAAAGAGTGCCACGGAGTTGTGGG
* * *
112404 CTTTGAAAAGAAGAAG-GTGCCACAG-AGTTGTGGGCTTTGAAAAGAAGAAG-GTGCCACGGAGT
58 CTTAG-AAGGAA-AAGAGTGCCAC-GTAGTTGTGGGCTTTAAAAAGAA-AAGAGTGCCACGGAGT
* *
112466 TGTGGGCTTTG
119 CGTGGACTTTG
*
112477 AAAAGAAGAATGTGCCACGGAGTTGTGGGCTTTAAAGG-AAAAG-GTGCCACGAAGTTGTGG
1 AAAAG--G---GTGCCACGGAGTTGTGGGC-TTAAAGGAAAAAGAGTGCCACGGAGTTGTGG
112537 ACTTTGAGCA
Statistics
Matches: 412, Mismatches: 16, Indels: 54
0.85 0.03 0.11
Matches are distributed among these distances:
125 3 0.01
126 37 0.09
127 122 0.30
128 19 0.05
129 2 0.00
130 3 0.01
131 2 0.00
132 28 0.07
133 28 0.07
134 21 0.05
135 4 0.01
136 22 0.05
137 61 0.15
138 7 0.02
139 4 0.01
140 21 0.05
141 23 0.06
142 1 0.00
143 4 0.01
ACGTcount: A:0.32, C:0.13, G:0.36, T:0.20
Consensus pattern (129 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAG
GAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAAAGAAAAGAGTGCCACGGAGTCGTGGACTTTG
Found at i:112216 original size:27 final size:27
Alignment explanation
Indices: 112178--112237 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
112168 GCTTTAAAGG
*
112178 AAAAGAGTGCCACGGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
* *
112205 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
*
112232 AGAAGG
1 AAAAGG
112238 AAAAGAAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.15, G:0.38, T:0.18
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTCGTGGACTT
Found at i:112568 original size:31 final size:31
Alignment explanation
Indices: 112533--112795 Score: 377
Period size: 31 Copynumber: 8.3 Consensus size: 31
112523 CCACGAAGTT
*
112533 GTGGACTTTGAGCAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
112564 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
* *
112595 GTGGACTTTAAAAAGGAAAAGA-TGCCACTGAGTC
1 GTGGACTTT---GA-GAAGAGATTGCCACTGAGTC
*
112629 GTGGACTTTGAGCAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
112660 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
* *
112691 GTGGACTTTAAAAAGGAAAAGA-TGCCACTGAGTC
1 GTGGACTTT---GA-GAAGAGATTGCCACTGAGTC
*
112725 GTGGACTTTGAGCAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
112756 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
112787 GTGGACTTT
1 GTGGACTTT
112796 AAAAAGGTAT
Statistics
Matches: 209, Mismatches: 13, Indels: 20
0.86 0.05 0.08
Matches are distributed among these distances:
30 10 0.05
31 143 0.68
34 44 0.21
35 12 0.06
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (31 bp):
GTGGACTTTGAGAAGAGATTGCCACTGAGTC
Found at i:112626 original size:34 final size:33
Alignment explanation
Indices: 111919--112799 Score: 424
Period size: 34 Copynumber: 26.9 Consensus size: 33
111909 AGGAATGGAG
*
111919 AAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGGAA
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAA--G-A
* * *
111953 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGA
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* * * * *
111986 AAAAAGTGCCACGGAGTTGTGGGC-TTAGAAGGA
1 AAAGATTGCCACTGAGTTGTGGACTTTA-AAAGA
* * *
112019 AAAGAGTGCCAC-GTAGTTGTGGGCTTTAAAGGA
1 AAAGATTGCCACTG-AGTTGTGGACTTTAAAAGA
* * *
112052 AAAGAGTGCCACGGAGTCGTGGAC-TTAAAAG-
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* * * *
112083 ---G-GTGCCACGGAGTTGTGGGC-TTAGAAGGAA
1 AAAGATTGCCACTGAGTTGTGGACTTTA-AAAG-A
* * * *
112113 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGA
1 AAAGATTGCCACTGAGTTGTGGACTTTA-AAAGA
* * *
112146 AAAGAGTGCCAC-GTAGTTGTGGGCTTTAAAGGA
1 AAAGATTGCCACTG-AGTTGTGGACTTTAAAAGA
* * *
112179 AAAGAGTGCCACGGAGTCGTGGAC-TTAAAAG-
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* * * *
112210 ---G-GTGCCACGGAGTTGTGGGC-TTAGAAGGA
1 AAAGATTGCCACTGAGTTGTGGACTTTA-AAAGA
* * *
112239 AAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAG-A-TTGCCACTGAGTTGTGGACTTT-AAAA--G-A
* * *
112278 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGA
1 AAAGATTGCCACTGAGTTGTGGACTTT-AAAAGA
* * *
112312 AAA-AGGTGCCACGGAGTTGTGGGCTTTGAAACAGA
1 AAAGA-TTGCCACTGAGTTGTGGACTTT-AAA-AGA
* *
112347 AAA-AGGTGCCACGGAGTTGTGGAC-TTAAAGATGA
1 AAAGA-TTGCCACTGAGTTGTGGACTTTAAA-A-GA
* * * *
112381 AAAAAGTGCCACAGAGTTGTGGGCTTTGAAAAGA
1 AAAGATTGCCACTGAGTTGTGGACTTT-AAAAGA
* * *
112415 AGAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAGA
1 A-AAGATTGCCACTGAGTTGTGGACTTT-AAAAGA
* * *
112449 AGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGA
1 A-AAGATTGCCACTGAGTTGTGGACTTT-AAAAGA
* * * *
112483 AGA-ATGTGCCACGGAGTTGTGGGCTTTAAAGGA
1 AAAGAT-TGCCACTGAGTTGTGGACTTTAAAAGA
* * *
112516 AAAG-GTGCCAC-GAAGTTGTGGACTTT--GAGC
1 AAAGATTGCCACTG-AGTTGTGGACTTTAAAAGA
* * *
112546 AGAGATTGCCACTGAGTCGTGGACTTT--GAGA
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* *
112577 AGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGA
1 AAAGATTGCCACTGAGTTGTGGACTTT-AAAA-GA
* * *
112612 AAAGA-TGCCACTGAGTCGTGGACTTT--GAGC
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* * *
112642 AGAGATTGCCACTGAGTCGTGGACTTT--GAGA
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* *
112673 AGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGA
1 AAAGATTGCCACTGAGTTGTGGACTTT-AAAA-GA
* * *
112708 AAAGA-TGCCACTGAGTCGTGGACTTT--GAGC
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* * *
112738 AGAGATTGCCACTGAGTCGTGGACTTT--GAGA
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
* *
112769 AGAGATTGCCACTGAGTCGTGGACTTTAAAA
1 AAAGATTGCCACTGAGTTGTGGACTTTAAAA
112800 AGGTATTTGA
Statistics
Matches: 742, Mismatches: 51, Indels: 109
0.82 0.06 0.12
Matches are distributed among these distances:
27 40 0.05
28 8 0.01
30 14 0.02
31 153 0.21
32 37 0.05
33 137 0.18
34 225 0.30
35 81 0.11
36 13 0.02
37 27 0.04
38 2 0.00
39 5 0.01
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (33 bp):
AAAGATTGCCACTGAGTTGTGGACTTTAAAAGA
Found at i:112631 original size:65 final size:62
Alignment explanation
Indices: 112533--112797 Score: 363
Period size: 65 Copynumber: 4.2 Consensus size: 62
112523 CCACGAAGTT
* *
112533 GTGGACTTTGAGCAGAGATTGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGACTTTAAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTC
* *
112595 GTGGACTTTAAAAAGGAAAAGA-TGCCACTGAGTCGTGGACTTTGAGCAGAGATTGCCACTGAGT
1 GTGGACTTT---AA-GAAGAGATTGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGT
112659 C
62 C
* * *
112660 GTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGAAAAGA-TGCCACTGAGT
1 GTGGACTTTAAGAAGAGATTGCCACTGAGTCGTGGACTTT---GA-GAAGAGATTGCCACTGAGT
112724 C
62 C
* *
112725 GTGGACTTTGAGCAGAGATTGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGACTTTAAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTC
112787 GTGGACTTTAA
1 GTGGACTTTAA
112798 AAAGGTATTT
Statistics
Matches: 180, Mismatches: 13, Indels: 20
0.85 0.06 0.09
Matches are distributed among these distances:
61 12 0.07
62 54 0.30
65 104 0.58
66 10 0.06
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (62 bp):
GTGGACTTTAAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTC
Found at i:112633 original size:96 final size:96
Alignment explanation
Indices: 112455--112802 Score: 558
Period size: 96 Copynumber: 3.6 Consensus size: 96
112445 AAGAAGAAGG
* * * * * * *
112455 TGCCACGGAGTTGTGGGCTTTGAAAAGAAGAATGTGCCACGGAGTTGTGGGCTTT--AAAGGAAA
1 TGCCACTGAGTCGTGGACTTTGAGAAG-AG-AT-TGCCACTGAGTCGTGGACTTTAAAAAGGAAA
* *
112518 AGGTGCCAC-GAAGTTGTGGACTTTGAGCAGAGAT
63 AGATGCCACTG-AGTCGTGGACTTTGAGCAGAGAT
112552 TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGAAAAGA
112617 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
66 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
112648 TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGAAAAGA
112713 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
66 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
112744 TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGG
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGG
112803 TATTTGAAGA
Statistics
Matches: 239, Mismatches: 9, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
94 18 0.08
95 2 0.01
96 195 0.82
97 24 0.10
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (96 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAAAAAGGAAAAGA
TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
Done.