Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2360
Parameters: 2 7 7 80 10 50 1000
Length:  52590

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
872--1126
138
1.8
139
81
4
318
28
9
14
47
1.75
4606--4818
76
2.8
76
75
14
188
31
18
8
41
1.81
5019--5067
23
2.2
22
81
3
53
18
4
12
65
1.41
6125--6501
188
2.0
188
94
1
666
37
12
14
35
1.85
9260--9306
20
2.3
20
78
7
51
23
6
6
63
1.41
9980--10028
16
3.0
16
79
11
55
32
0
4
63
1.13
10896--10920
13
1.9
13
100
0
50
84
0
0
16
0.63
11152--11208
22
2.5
22
80
11
62
52
0
1
45
1.11
13810--13863
22
2.5
21
78
6
63
55
5
0
38
1.23
14548--14593
21
2.2
21
88
3
67
43
0
8
47
1.34
15147--15179
16
2.1
16
88
5
50
54
0
24
21
1.45
15363--15408
23
2.1
21
84
8
56
39
0
0
60
0.97
18196--18239
18
2.4
19
81
7
56
47
0
0
52
1.00
18188--18235
18
2.5
19
80
13
53
50
0
0
50
1.00
18168--18224
30
1.9
29
86
10
80
45
0
0
54
0.99
18512--18561
20
2.4
21
83
3
66
58
0
0
42
0.98
18834--18866
14
2.3
15
94
5
59
54
0
0
45
0.99
19355--19402
13
3.7
13
80
0
51
31
4
2
62
1.26
19590--19620
3
10.3
3
100
0
62
67
0
0
32
0.91
19675--19764
30
3.3
27
71
17
78
57
0
1
41
1.06
20086--20132
23
2.0
24
88
8
71
65
8
4
21
1.37
20735--20777
9
4.4
9
78
16
50
2
13
0
83
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20736--20782
19
2.5
17
83
16
58
2
17
0
80
0.80
20735--20773
21
1.9
20
89
5
60
2
15
0
82
0.79
20907--21019
59
1.9
59
83
5
149
49
7
11
30
1.68
21765--21820
23
2.4
24
82
8
62
0
21
0
78
0.75
22149--22192
2
23.0
2
88
9
65
52
0
0
47
1.00
22226--22260
18
1.9
18
100
0
70
45
0
14
40
1.45
23553--23596
20
2.2
20
84
8
54
45
18
9
27
1.79
25171--25214
18
2.4
18
84
0
52
45
2
36
15
1.59
28105--28155
24
2.2
23
82
10
59
35
5
13
45
1.68
29418--29528
47
2.3
48
79
8
120
35
13
10
40
1.80
29596--29626
16
1.9
16
93
0
53
41
29
0
29
1.56
33442--33467
3
8.7
3
100
0
52
30
34
0
34
1.58
36284--36350
35
1.9
35
96
0
125
28
10
2
58
1.46
36542--36603
21
2.8
22
71
17
56
58
3
0
38
1.15
36871--36910
21
2.0
20
85
5
53
55
7
10
27
1.60
37475--37510
18
1.9
18
88
5
54
55
0
0
44
0.99
37724--37762
19
2.1
19
86
13
55
58
0
0
41
0.98
38915--38954
3
13.3
3
100
0
80
32
35
0
32
1.58
41481--41546
2
33.0
2
100
0
132
0
50
0
50
1.00
46113--46156
20
2.1
21
87
4
63
38
0
0
61
0.96
47023--47062
16
2.4
16
87
4
53
72
2
2
22
1.09
47226--47263
18
2.2
18
86
13
53
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47246--47285
20
2.0
20
85
0
53
52
0
0
47
1.00
47270--47318
16
2.8
16
85
14
62
61
2
0
36
1.08
48069--48093
11
2.3
11
100
0
50
40
0
0
60
0.97
48257--48287
2
15.5
2
100
0
62
48
0
0
51
1.00
49493--49532
14
2.9
15
85
10
50
50
0
0
50
1.00
49530--49554
8
3.1
8
100
0
50
28
0
0
72
0.86
49701--49731
12
2.6
12
94
0
53
87
0
6
6
0.68
51182--51266
16
4.9
17
79
12
93
57
1
1
40
1.14
51212--51266
17
3.4
16
80
11
67
63
0
0
36
0.95

Tables:   1

The End!