genome.fa.s2361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2361
Parameters: 2 7 7 80 10 50 1000
Length:  31572

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893--918	13	2.0	13	100	0	52	38	15	15	30	1.88
875--939	34	2.0	34	87	6	98	43	16	13	26	1.86
2829--2978	70	2.1	69	79	7	160	30	23	8	37	1.85
2993--3092	52	1.9	52	91	4	166	32	18	9	41	1.81
2893--3189	149	2.0	148	97	0	567	30	23	10	35	1.88
3045--3232	97	1.9	97	83	2	243	28	26	11	34	1.91
3821--3885	19	3.8	18	75	24	77	32	12	16	38	1.86
3823--3890	32	2.1	32	97	0	127	33	11	17	36	1.86
3842--3866	13	1.9	13	100	0	50	36	16	16	32	1.90
3938--3962	13	1.9	13	100	0	50	32	16	16	36	1.90
13864--13927	32	2.0	33	84	9	87	29	12	17	40	1.86
14356--14586	49	4.8	49	82	7	221	24	24	19	32	1.98
14356--14692	52	6.8	49	77	9	251	24	24	17	33	1.96
15251--15306	21	2.7	21	100	0	112	35	14	14	35	1.86
19264--19402	61	2.3	60	79	7	163	43	12	20	24	1.86
19347--20291	52	17.7	52	72	11	446	37	15	23	24	1.93
19333--19575	113	2.2	113	86	0	333	40	14	22	22	1.90
19444--19953	278	1.8	279	87	0	752	36	15	23	24	1.93
19614--19793	61	3.0	60	79	1	189	37	13	24	25	1.92
19734--20291	156	3.6	156	80	5	569	37	14	23	24	1.92
20303--20792	32	15.3	32	82	5	499	21	16	32	29	1.95
20305--20783	65	7.5	65	79	7	455	21	16	32	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20817--20969	32	4.5	33	82	5	166	42	10	27	19	1.84
20831--20969	66	2.1	68	82	8	169	43	9	27	20	1.82
20949--21039	30	3.0	29	72	20	78	23	16	36	24	1.94
22504--22616	55	2.0	56	96	1	210	30	3	30	35	1.75
29253--29376	31	4.0	31	73	4	106	16	25	30	26	1.97
28992--29554	180	3.1	179	87	0	793	19	24	27	28	1.99
28933--29465	87	6.0	87	66	16	304	21	24	25	28	1.99
29433--29554	31	3.9	31	82	2	147	14	25	31	27	1.95
29580--29674	39	2.4	40	85	3	120	38	10	31	18	1.85
30819--30857	16	2.4	16	86	0	51	12	0	2	84	0.72

Tables:   1

The End!