Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2362

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4039
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32


Found at i:1092 original size:11 final size:12

Alignment explanation


    Indices: 1065--1091  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1055 AATAGAAAAC

                        
       1065 TTTTCATCACTT
          1 TTTTCATCACTT

                        
       1077 TTTTCATCACTT
          1 TTTTCATCACTT

               
       1089 TTT
          1 TTT

       1092 CTTTAGCCTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.15, C:0.22, G:0.00, T:0.63


Consensus pattern (12 bp):   
TTTTCATCACTT

Found at i:3086 original size:16 final size:16

Alignment explanation


    Indices: 3061--3111  Score: 84
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       3051 AAGAAAGAGC

                            
       3061 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

            *    *          
       3077 GAATATGCTAGTAAAT
          1 AAATACGCTAGTAAAT

                            
       3093 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               
       3109 AAA
          1 AAA

       3112 ATACTAGAAA


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   31  1.00

ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25


Consensus pattern (16 bp):   
AAATACGCTAGTAAAT
Done.