Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2366
Parameters: 2 7 7 80 10 50 1000
Length:  75091

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9767--9998
50
4.6
50
90
0
356
31
19
19
29
1.97
11890--12055
50
3.4
49
93
1
280
29
19
21
29
1.98
12401--12435
17
2.1
16
89
10
52
54
0
0
45
0.99
13756--13945
95
2.0
95
98
0
371
46
8
5
38
1.58
18657--18691
17
2.1
18
89
10
56
57
2
0
40
1.14
18958--19009
21
2.4
23
78
12
65
59
0
0
40
0.97
19607--19652
24
1.9
24
86
8
67
43
23
8
23
1.82
19645--19738
27
3.5
27
92
0
152
48
23
9
18
1.77
19611--19738
54
2.4
54
85
6
158
46
23
9
21
1.80
19633--19738
54
2.0
54
92
0
176
45
23
9
21
1.81
24469--24504
2
18.0
2
100
0
72
50
0
0
50
1.00
24989--25041
23
2.3
23
80
3
72
50
0
1
47
1.12
25976--26000
2
12.5
2
100
0
50
52
0
0
48
1.00
27065--27187
61
2.0
61
96
3
230
27
9
9
52
1.65
30080--30127
13
3.7
13
82
0
69
56
0
0
43
0.99
32569--32635
24
2.8
25
71
15
59
43
0
0
56
0.99
34846--34888
2
21.5
2
95
0
77
48
0
2
48
1.14
36052--36105
28
1.9
28
84
0
72
46
3
0
50
1.19
37467--37500
8
4.1
8
92
3
50
64
0
0
35
0.94
38364--38429
26
2.6
26
83
4
82
45
21
9
24
1.80
43351--43409
2
29.5
2
100
0
118
50
0
0
49
1.00
44198--44230
2
16.5
2
93
0
57
45
0
3
51
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44369--44466
10
10.1
10
73
16
73
69
3
0
27
1.03
44355--44466
20
5.5
20
68
21
72
69
2
0
27
1.02
44378--44474
49
2.0
50
84
11
130
70
3
0
26
1.02
44547--44590
6
7.5
6
94
5
81
84
0
0
15
0.63
44547--44590
17
2.5
18
92
7
81
84
0
0
15
0.63
44547--44590
23
1.9
23
100
0
88
84
0
0
15
0.63
44645--44724
18
4.7
18
73
14
80
70
0
2
27
1.01
44650--44725
8
9.2
9
77
17
60
71
0
2
26
1.00
44719--44786
18
3.7
18
70
27
61
29
0
1
69
0.98
44727--44804
38
2.0
39
85
11
108
25
1
1
71
1.01
47818--47864
26
1.9
23
87
12
67
48
0
0
51
1.00
49806--49882
29
2.5
31
83
10
95
45
0
0
54
0.99
50805--50837
17
1.9
17
100
0
66
36
0
15
48
1.45
53075--53118
13
3.4
13
87
0
61
34
6
38
20
1.79
53065--53121
13
4.4
13
81
0
51
36
7
38
17
1.77
55758--55817
31
1.9
32
86
3
86
40
8
0
51
1.32
57901--57946
25
1.9
25
86
8
69
47
0
0
52
1.00
58175--58303
65
2.0
66
95
1
233
33
3
18
44
1.68
58663--58705
14
3.3
14
81
12
56
32
0
0
67
0.91
58638--58715
25
2.9
28
76
18
76
38
1
0
60
1.05
59897--59973
29
2.5
31
83
10
95
45
0
0
54
0.99
60911--60943
17
1.9
17
100
0
66
36
0
15
48
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63191--63234
13
3.4
13
90
0
70
36
6
36
20
1.79
63300--63348
24
2.0
24
84
0
62
48
14
10
26
1.75
63322--63395
27
2.7
27
82
0
94
47
16
10
25
1.79
68279--68463
66
2.8
66
99
0
361
34
4
17
43
1.70
68472--68498
14
1.9
14
100
0
54
37
11
0
51
1.37
68798--68875
25
2.9
28
72
18
67
38
2
0
58
1.12
70050--70128
31
2.7
31
77
14
89
44
0
1
54
1.08
71068--71100
17
1.9
17
100
0
66
36
0
15
48
1.45
71105--71133
2
15.0
2
92
7
51
51
0
0
48
1.00
72735--72778
13
3.4
13
83
0
61
31
6
40
20
1.79
72866--72939
27
2.7
27
87
0
112
45
18
10
24
1.81
73030--73100
27
2.6
27
84
6
90
25
5
22
46
1.73
73197--73236
20
2.0
20
85
0
53
15
45
5
35
1.68

Tables:   1

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