Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2367
Parameters: 2 7 7 80 10 50 1000
Length:  145604

Tables:   1   2   

This is table  2  of  2  ( 206 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78105--78181
3
25.3
3
74
12
68
35
1
1
62
1.12
79526--79569
21
2.1
21
100
0
88
40
9
9
40
1.68
79658--79697
2
20.0
2
100
0
80
0
50
0
50
1.00
79837--79948
15
6.9
15
70
20
66
41
0
2
55
1.14
79870--79948
16
4.7
16
69
25
56
46
0
1
51
1.08
80027--80061
15
2.2
17
90
10
56
45
0
0
54
0.99
80833--80858
6
4.3
6
100
0
52
0
15
0
84
0.62
80971--81008
18
2.2
17
90
4
58
60
0
0
39
0.97
87926--87974
3
16.7
3
87
12
75
32
0
0
67
0.91
89220--89268
3
16.7
3
87
12
75
32
0
0
67
0.91
90514--90562
3
16.7
3
87
12
75
32
0
0
67
0.91
91808--91856
3
16.7
3
87
12
75
32
0
0
67
0.91
93102--93150
3
16.7
3
87
12
75
32
0
0
67
0.91
93370--93625
117
2.2
119
79
5
261
35
19
13
32
1.90
93577--93820
110
2.2
110
81
1
283
34
13
14
38
1.85
94708--94746
18
2.3
17
83
12
53
30
5
0
64
1.15
95051--95082
14
2.4
14
90
10
50
78
0
0
21
0.76
95173--95227
28
1.9
30
85
7
78
49
1
1
47
1.23
95486--95540
16
3.7
14
79
13
65
65
0
1
32
1.03
96298--96364
32
2.1
32
81
15
77
50
2
0
46
1.16
96313--96387
40
2.0
38
84
10
100
50
0
0
49
1.00
96501--96543
13
3.1
14
80
10
52
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96507--96572
19
3.6
19
71
20
59
36
0
1
62
1.05
97570--97600
15
2.1
15
100
0
62
32
19
12
35
1.90
97868--97943
38
2.0
38
97
0
143
28
14
27
28
1.95
99752--99823
18
4.0
17
77
12
63
58
0
1
40
1.07
99790--99825
17
2.1
17
89
5
54
55
0
0
44
0.99
99773--99827
24
2.3
24
78
12
60
52
0
1
45
1.11
100777--100811
2
17.0
2
88
5
52
51
0
2
45
1.16
101217--101254
2
19.0
2
94
0
67
50
2
0
47
1.15
102862--102933
14
5.4
14
77
9
62
59
0
1
38
1.06
102941--102974
17
1.9
18
94
5
61
44
0
0
55
0.99
103902--103932
13
2.4
13
94
0
53
41
6
41
9
1.63
104017--104090
27
2.7
28
87
2
105
47
16
8
28
1.75
106960--107042
27
3.0
27
82
1
94
46
19
9
24
1.79
108395--108437
20
2.2
20
82
0
50
34
2
2
60
1.22
108453--108501
20
2.3
21
83
13
57
71
0
0
28
0.86
108453--108503
11
4.8
11
85
9
63
70
0
0
29
0.87
108961--109000
18
2.2
18
86
4
53
60
0
2
37
1.11
109252--109316
30
2.1
30
83
8
78
46
0
0
53
1.00
109265--109324
30
2.0
31
86
3
86
50
0
0
50
1.00
109517--109549
2
16.5
2
100
0
66
51
0
0
48
1.00
110545--110575
2
15.5
2
100
0
62
51
0
0
48
1.00
111272--111312
2
20.5
2
100
0
82
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112739--112788
20
2.5
21
78
15
52
34
2
6
58
1.34
112822--112879
21
2.8
21
73
23
59
43
1
6
48
1.40
115649--115691
22
2.0
22
90
4
70
48
9
4
37
1.56
116002--116049
20
2.3
20
76
13
53
41
4
2
52
1.32
116170--116211
15
2.6
17
77
14
52
52
0
4
42
1.22
116201--116273
20
3.4
21
72
20
71
49
2
0
47
1.15
116260--116311
24
2.1
26
85
7
72
48
3
1
46
1.31
116276--116368
47
2.0
47
81
12
111
45
1
2
51
1.20
116247--116347
20
4.7
20
72
13
58
46
1
1
49
1.24
116786--116816
15
2.1
15
94
5
55
58
0
0
41
0.98
116791--116879
25
3.6
24
74
17
67
59
1
0
39
1.05
118466--118512
4
11.8
4
100
0
94
76
0
0
23
0.78
118977--119015
20
1.9
19
90
10
60
46
0
35
17
1.49
120190--120243
21
2.4
23
75
9
58
37
7
1
53
1.40
120258--120294
19
2.0
18
89
5
56
62
2
5
29
1.31
120271--120340
32
2.2
32
84
5
88
52
4
2
40
1.36
120326--120393
33
2.2
30
80
15
75
52
2
1
42
1.25
121032--121060
2
14.5
2
100
0
58
48
0
0
51
1.00
123203--123241
20
1.9
21
94
5
71
38
17
7
35
1.79
129329--129353
13
1.9
13
100
0
50
40
16
12
32
1.84
129421--129447
13
2.1
13
100
0
54
40
14
14
29
1.86
130143--130179
15
2.4
16
82
17
51
54
0
0
45
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
130268--130310
19
2.1
21
87
8
63
51
2
0
46
1.13
130802--130935
17
7.5
17
73
15
85
40
0
1
58
1.07
130809--130933
7
17.9
7
66
22
50
40
0
1
58
1.08
130812--130963
5
31.2
5
66
19
65
37
0
1
60
1.10
130808--130871
26
2.6
25
79
16
62
40
0
1
57
1.08
130834--130943
30
3.7
29
78
14
100
40
0
0
59
1.04
130838--130942
14
6.9
16
67
23
57
40
0
0
58
1.05
130878--130971
24
3.9
24
73
6
66
32
2
1
63
1.13
131114--131158
3
15.0
3
100
0
90
33
0
0
66
0.92
132968--133005
13
2.7
14
84
12
51
55
0
0
44
0.99
133662--133742
30
2.9
30
73
14
75
53
0
2
44
1.14
133894--133934
21
2.0
20
85
4
55
63
0
0
36
0.95
134344--134375
2
16.0
2
100
0
64
0
50
0
50
1.00
136996--137034
6
6.5
6
96
0
60
74
0
0
25
0.82
140206--140238
3
11.0
3
100
0
66
66
0
0
33
0.92
141679--141713
2
17.5
2
100
0
70
48
0
0
51
1.00
141838--141983
72
2.0
72
95
0
265
32
6
36
24
1.80
142691--142725
2
17.5
2
100
0
70
48
0
0
51
1.00
144303--144353
23
2.2
23
79
6
59
56
0
0
43
0.99
145513--145575
32
2.0
32
84
3
83
44
17
7
30
1.77

Tables:   1   2

The End!