genome.fa.s2368.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2368
Parameters: 2 7 7 80 10 50 1000
Length:  123445

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1697--1773	31	2.5	31	100	0	154	38	18	12	29	1.88
1844--1868	13	1.9	13	100	0	50	32	16	16	36	1.90
1816--1887	33	2.2	33	95	2	128	33	19	13	33	1.91
1823--1888	19	3.8	18	74	25	70	33	18	13	34	1.90
1924--2000	21	3.7	21	85	3	102	36	16	11	35	1.86
2753--2839	26	3.2	26	65	15	68	21	18	32	27	1.97
2706--3617	55	16.0	55	82	10	1018	24	20	28	26	1.99
2706--3617	171	5.3	171	90	5	1276	24	20	28	26	1.99
3349--3435	28	3.1	28	63	21	74	26	19	26	27	1.99
4607--4692	1	86.0	1	74	0	64	0	3	10	86	0.70
4608--4681	20	3.6	19	82	14	85	0	4	9	86	0.69
4608--4692	11	7.9	10	83	15	91	0	3	10	85	0.70
4619--4692	17	4.2	17	79	16	71	0	1	12	86	0.63
17157--17233	27	2.8	27	86	5	102	25	19	31	23	1.98
17072--17333	103	2.5	104	86	5	350	28	16	29	25	1.97
17317--17438	51	2.3	52	83	8	142	31	10	22	35	1.88
21377--21401	5	5.0	5	100	0	50	20	0	0	80	0.72
30982--31011	2	15.0	2	100	0	60	50	0	0	50	1.00
33417--33480	20	3.2	20	73	8	67	53	3	10	32	1.52
35852--37252	28	48.8	28	83	6	1499	26	17	26	29	1.97
37219--37604	28	14.0	27	82	5	382	32	15	27	24	1.95
37143--37604	56	8.3	56	80	6	424	31	14	27	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37219--37601	83	4.6	79	79	7	354	32	15	27	25	1.95
49071--49300	76	3.0	76	82	6	243	27	17	11	43	1.83
49273--49450	75	2.3	76	83	3	207	30	23	10	35	1.88
50488--50513	13	2.0	13	100	0	52	30	15	15	38	1.88
50468--50535	33	2.1	33	89	8	104	35	14	16	33	1.89
52702--52775	36	2.1	36	100	0	148	58	2	14	24	1.50
57697--57730	18	1.9	17	88	5	50	32	29	11	26	1.92
59299--59324	13	2.0	13	100	0	52	30	15	15	38	1.88
59279--59346	33	2.1	32	91	8	111	35	16	16	32	1.91
61474--61593	28	4.3	28	76	7	102	53	6	6	33	1.53
61756--61814	29	2.0	29	93	0	100	35	11	8	44	1.72
61963--62015	20	2.7	19	82	8	61	28	15	18	37	1.91
64010--64066	17	3.2	17	76	13	69	56	0	0	43	0.99
64015--64089	19	4.0	20	75	16	79	56	0	0	44	0.99
65164--65200	18	2.1	18	100	0	74	67	0	0	32	0.91
65154--65212	18	3.5	17	80	17	61	66	0	0	33	0.92
65177--65231	11	5.2	11	78	8	51	65	0	0	34	0.93
67430--67471	21	2.0	22	86	13	61	50	0	0	50	1.00
68682--68719	3	12.7	3	94	0	67	31	0	2	65	1.06
69095--69124	2	15.0	2	100	0	60	0	50	0	50	1.00
79527--79560	13	2.6	13	95	0	59	41	32	0	26	1.56
81533--81607	20	3.8	20	80	0	96	33	13	12	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81533--81610	40	2.0	39	89	2	120	33	12	12	41	1.82
82559--82584	13	2.0	13	100	0	52	38	15	15	30	1.88
84197--84230	12	2.8	12	90	0	50	41	0	35	23	1.55
88732--88770	13	3.0	13	84	0	51	30	12	15	41	1.85
88892--88943	21	2.5	19	73	14	50	34	21	3	40	1.71
89045--89069	13	1.9	13	100	0	50	36	16	8	40	1.77
91346--91371	13	2.0	13	100	0	52	38	15	15	30	1.88
91958--92236	139	2.0	139	98	0	540	27	18	18	34	1.95
97556--97628	34	2.1	34	100	0	146	31	39	10	17	1.85
97736--99546	28	65.0	28	83	4	1871	26	31	15	26	1.96
97736--99192	82	17.7	82	86	2	1739	25	31	15	27	1.95
97751--99192	138	10.5	137	86	2	1867	25	31	15	27	1.95
100156--100230	20	3.8	20	80	0	96	33	13	12	41	1.81
100156--100233	40	2.0	39	89	2	120	33	12	12	41	1.82
105164--105214	21	2.4	21	90	0	75	41	25	19	13	1.88
106765--106794	12	2.5	12	94	0	51	93	3	3	0	0.42
107837--110000	28	77.6	28	85	4	2409	26	31	15	26	1.96
107837--110000	138	15.5	139	86	3	2384	26	31	15	26	1.96
109609--110153	32	18.2	31	79	9	487	30	31	18	20	1.96
109590--110153	152	3.8	149	86	6	712	29	30	18	20	1.97
110726--110796	20	3.5	20	80	0	88	33	12	12	40	1.81
113861--113903	21	2.0	21	100	0	86	23	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119623--119667	22	2.0	22	95	0	81	31	26	4	37	1.76

Tables:   1

The End!