Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2371
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121851
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:385 original size:13 final size:13
Alignment explanation
Indices: 367--392 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
357 TACACAAAGT
367 ATGTATCGATACA
1 ATGTATCGATACA
380 ATGTATCGATACA
1 ATGTATCGATACA
393 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:390 original size:32 final size:33
Alignment explanation
Indices: 349--412 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
339 TAGCCAAACT
**
349 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
381 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
413 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2486 original size:13 final size:13
Alignment explanation
Indices: 2468--2508 Score: 82
Period size: 13 Copynumber: 3.2 Consensus size: 13
2458 TCTGGAAATT
2468 CAATGTATCGATA
1 CAATGTATCGATA
2481 CAATGTATCGATA
1 CAATGTATCGATA
2494 CAATGTATCGATA
1 CAATGTATCGATA
2507 CA
1 CA
2509 TTTTTCTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:2522 original size:20 final size:20
Alignment explanation
Indices: 2497--2561 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 20
2487 ATCGATACAA
2497 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
* *
2517 TGTATCAATACA------AT
1 TGTATCGATACATTTTTCTT
2531 -GTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
2550 TGTATCGATACA
1 TGTATCGATACA
2562 ATGTATCGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
13 10 0.29
14 1 0.03
19 1 0.03
20 22 0.65
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTT
Found at i:2528 original size:33 final size:33
Alignment explanation
Indices: 2484--2574 Score: 173
Period size: 33 Copynumber: 2.8 Consensus size: 33
2474 ATCGATACAA
2484 TGTATCGATACAATGTATCGATACATTTTTCTT
1 TGTATCGATACAATGTATCGATACATTTTTCTT
*
2517 TGTATCAATACAATGTATCGATACATTTTTCTT
1 TGTATCGATACAATGTATCGATACATTTTTCTT
2550 TGTATCGATACAATGTATCGATACA
1 TGTATCGATACAATGTATCGATACA
2575 CTGTATCTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATGTATCGATACATTTTTCTT
Found at i:2568 original size:13 final size:13
Alignment explanation
Indices: 2550--2587 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
2540 CATTTTTCTT
2550 TGTATCGATACAA
1 TGTATCGATACAA
*
2563 TGTATCGATACAC
1 TGTATCGATACAA
*
2576 TGTATCTATACA
1 TGTATCGATACA
2588 GGGGGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2742 original size:20 final size:20
Alignment explanation
Indices: 2699--2744 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2689 AAATCTTTTG
2699 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
2720 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
2740 CAAAA
1 CAAAA
2745 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:3061 original size:21 final size:20
Alignment explanation
Indices: 3019--3061 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
3009 GGCAGCACCA
* *
3019 CCAGGTCGCGACCGGCACTC
1 CCAGGTCACAACCGGCACTC
*
3039 CCAGGTCACAACCAGGCAGTC
1 CCAGGTCACAACC-GGCACTC
3060 CC
1 CC
3062 CACACTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.21, C:0.44, G:0.26, T:0.09
Consensus pattern (20 bp):
CCAGGTCACAACCGGCACTC
Found at i:4429 original size:38 final size:39
Alignment explanation
Indices: 4387--4473 Score: 90
Period size: 39 Copynumber: 2.3 Consensus size: 39
4377 TTTTTAGTAA
*
4387 AAGGGGAGAATGCATAAATTTGCTAAAATTA-TCTTA-TT
1 AAGGGGAGAATGCACAAATTTGCTAAAATTACT-TTAGTT
* * * *
4425 AAGGGGGATAATGTACGAATTTGTTAAAATTACTTTAGTT
1 AA-GGGGAGAATGCACAAATTTGCTAAAATTACTTTAGTT
4465 AA-GGGAGAA
1 AAGGGGAGAA
4474 AGAAAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
38 8 0.20
39 27 0.68
40 5 0.12
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (39 bp):
AAGGGGAGAATGCACAAATTTGCTAAAATTACTTTAGTT
Found at i:5109 original size:13 final size:13
Alignment explanation
Indices: 5091--5116 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5081 TGCACAAAGT
5091 ATGTATCGATACA
1 ATGTATCGATACA
5104 ATGTATCGATACA
1 ATGTATCGATACA
5117 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5119 original size:32 final size:33
Alignment explanation
Indices: 5073--5136 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
5063 GTAGCAAACT
* **
5073 TGTATCGATGCACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
5105 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
5137 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:6044 original size:62 final size:62
Alignment explanation
Indices: 5977--6320 Score: 406
Period size: 62 Copynumber: 5.6 Consensus size: 62
5967 CTTTTAACCT
* *
5977 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACACGAGTTGATGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
** * * * *
6039 TTTAGTCCTCAAAGAATAAGATGCTTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * *
6101 TTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCATAGCCCACACGAGTTGGTGGCAACC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * **
6163 TTTAGTCCTCAAAGAGCAGGATG-CTTTTT-TTTTCAAAGCCCATATGAGTTAGTGGTACTG
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * *
6223 TTTTGTCCTCAAAGAGCAGGACACCTTTTCCTTTTTAAAGCCCACATGAGTTGGT-GCTACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC-ACCC
* *
6285 TTTAGTCCTCAAAGAGCAGGCACTCCATTTTCTTTT
1 TTTAGTCCTCAAAGAGCAGG-ACGCCTTTTTCTTTT
6321 TTCCTTTGTC
Statistics
Matches: 241, Mismatches: 37, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
60 43 0.18
61 12 0.05
62 174 0.72
63 12 0.05
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (62 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
Found at i:6265 original size:122 final size:124
Alignment explanation
Indices: 5974--6304 Score: 425
Period size: 122 Copynumber: 2.7 Consensus size: 124
5964 CCCCTTTTAA
* * *
5974 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACACGAGTTGATGGCACCC
1 CCTTTT-GTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAACC
** * * *
6039 TTTAGTCCTCAAAGAATAAGATGCTTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
65 TTTAGTCCTCAAAGAGCAGGATGCTTTTTTCTTTTCAAAGCCCACACGAGTTAGTGGCAC
* * * *
6099 CCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCATAGCCCACACGAGTTGGTGGCAACCT
1 CCTTTTGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAACCT
* * *
6164 TTAGTCCTCAAAGAGCAGGATGC-TTTTT-TTTTCAAAGCCCATATGAGTTAGTGGTAC
66 TTAGTCCTCAAAGAGCAGGATGCTTTTTTCTTTTCAAAGCCCACACGAGTTAGTGGCAC
** * * * * *
6221 TGTTTTGTCCTCAAAGAGCAGGACACCTTTTCCTTTTTAAAGCCCACATGAGTTGGT-GCTACCT
1 CCTTTTGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAACC-
6285 TTTAGTCCTCAAAGAGCAGG
65 TTTAGTCCTCAAAGAGCAGG
6305 CACTCCATTT
Statistics
Matches: 179, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
121 5 0.03
122 91 0.51
123 5 0.03
124 73 0.41
125 5 0.03
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (124 bp):
CCTTTTGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAACCT
TTAGTCCTCAAAGAGCAGGATGCTTTTTTCTTTTCAAAGCCCACACGAGTTAGTGGCAC
Found at i:6363 original size:42 final size:41
Alignment explanation
Indices: 6289--6637 Score: 191
Period size: 42 Copynumber: 8.5 Consensus size: 41
6279 CTACCTTTTA
* ** *
6289 GTCCTCAAAGAGCAGG-CAC-TCCATTTTCTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTTATTTCCTTTTTTCCTTT
* *
6328 GTCCTTAAGGAGCAGGACGCACTTTATTTCCTTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCA-TTTATTTCC-TTTTTTCCTTT
* * * *
6371 GTCCTCAAAGTGTAGGACACATTTCGTTCTCC-TTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTT-ATT-TCCTTTTTTCCTTT
* * * * *
6413 ATCCTTAAAGAGCAAGG-CACACCTCATTTCCTTCTTTTCCTTTT
1 GTCCTCAAAGAGC-AGGACGCA-TTTATTTCCTT-TTTTCC-TTT
* * * * *
6457 GTTCTCAAAGGGTAGGGCGCATTCCATTTCCTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCATT-TATTTCCTTTTTTCCTTT
* * * * *
6499 GTTCTCGAAGAGCATGACG----TACTT--TTTTTCCCTTT
1 GTCCTCAAAGAGCAGGACGCATTTATTTCCTTTTTTCCTTT
* *
6534 GTCCTCAAAGAGCAGGACAC-TTTACTTTTTCTTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTTA---TTTCCTTTTTTCCTTT
* * * *
6577 GTCTTTAAGGAGCAGGACCCATTTCA-TTCTCTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTT-ATTTC-CTTTTTTCCTTT
* *
6619 TTCCTCAAAGAGTAGGACG
1 GTCCTCAAAGAGCAGGACG
6638 TACTCCTTTT
Statistics
Matches: 235, Mismatches: 51, Indels: 45
0.71 0.15 0.14
Matches are distributed among these distances:
35 25 0.11
37 3 0.01
38 2 0.01
39 14 0.06
40 2 0.01
41 8 0.03
42 76 0.32
43 75 0.32
44 29 0.12
45 1 0.00
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (41 bp):
GTCCTCAAAGAGCAGGACGCATTTATTTCCTTTTTTCCTTT
Found at i:6442 original size:85 final size:86
Alignment explanation
Indices: 6282--6498 Score: 230
Period size: 85 Copynumber: 2.6 Consensus size: 86
6272 GTTGGTGCTA
* * * * *
6282 CCTTTTAGTCCTCAAAGAGCAGG-CAC--TCCATTTTCTTTTTTCCTTTGTCCTTAAGGAGCAGG
1 CCTTTT-GTCCTCAAAGGGTAGGACACATTCCATTTCCTTTTTTCCTTTATCCTTAAAGAGCAGG
* * * *
6344 ACGCACTTTATTTCCTTTTTTT
65 ACACACCTCATTTCCTTCTTTT
* * *
6366 CC-TTTGTCCTCAAAGTGTAGGACACATTTCGTTCTCC-TTTTTCCTTTATCCTTAAAGAGCAAG
1 CCTTTTGTCCTCAAAGGGTAGGACACATTCCATT-TCCTTTTTTCCTTTATCCTTAAAGAGC-AG
6429 G-CACACCTCATTTCCTTCTTTT
64 GACACACCTCATTTCCTTCTTTT
* * *
6451 CCTTTTGTTCTCAAAGGGTAGGGCGCATTCCATTTCCTTTTTTCCTTT
1 CCTTTTGTCCTCAAAGGGTAGGACACATTCCATTTCCTTTTTTCCTTT
6499 GTTCTCGAAG
Statistics
Matches: 109, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
82 14 0.13
83 6 0.06
84 2 0.02
85 47 0.43
86 40 0.37
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.42
Consensus pattern (86 bp):
CCTTTTGTCCTCAAAGGGTAGGACACATTCCATTTCCTTTTTTCCTTTATCCTTAAAGAGCAGGA
CACACCTCATTTCCTTCTTTT
Found at i:6529 original size:86 final size:84
Alignment explanation
Indices: 6308--6636 Score: 214
Period size: 85 Copynumber: 4.0 Consensus size: 84
6298 GAGCAGGCAC
* * * *
6308 TCCATTTTCTTTTTTCCTTTGTCCTTAAGGAGCAGGACGCACTTTATTTCCTTTTTTTCCTTTGT
1 TCCATTTCCTTTTTTCCTTTGTCC-TAAAGAGCAAGACGCACTTTATTTCCTTCTTTTCCTTTGT
*
6373 CCTCAAAGTGTAGGACACAT
65 CCTCAAAGGGTAGGACACAT
* * * * * * *
6393 TTCGTTCTCC-TTTTTCCTTTATCCTTAAAGAGCAAGGCACACCTCATTTCCTTCTTTTCCTTTT
1 TCCATT-TCCTTTTTTCCTTTGTCC-TAAAGAGCAAGACGCACTTTATTTCCTTCTTTTCC-TTT
* * *
6457 GTTCTCAAAGGGTAGGGCGCAT
63 GTCCTCAAAGGGTAGGACACAT
* * * *
6479 TCCATTTCCTTTTTTCCTTTGTTCTCGAAGAGCATGACGTAC-TT-TTT--TTC----CCTTTGT
1 TCCATTTCCTTTTTTCCTTTGTCCT-AAAGAGCAAGACGCACTTTATTTCCTTCTTTTCCTTTGT
* * *
6536 CCTCAAAGAGCAGGACACTT
65 CCTCAAAGGGTAGGACACAT
** * * * * *
6556 TACTTTTTCTTTTTTTCCTTTGTCTTTAAGGAGCAGGACCCA-TTTCA-TTCTCTT-TTTTCCTT
1 T-CCATTTCCTTTTTTCCTTTGTC-CTAAAGAGCAAGACGCACTTT-ATTTC-CTTCTTTTCCTT
* *
6618 TTTCCTCAAAGAGTAGGAC
62 TGTCCTCAAAGGGTAGGAC
6637 GTACTCCTTT
Statistics
Matches: 185, Mismatches: 43, Indels: 32
0.71 0.17 0.12
Matches are distributed among these distances:
77 20 0.11
78 32 0.17
79 3 0.02
82 5 0.03
84 3 0.02
85 72 0.39
86 50 0.27
ACGTcount: A:0.18, C:0.25, G:0.14, T:0.44
Consensus pattern (84 bp):
TCCATTTCCTTTTTTCCTTTGTCCTAAAGAGCAAGACGCACTTTATTTCCTTCTTTTCCTTTGTC
CTCAAAGGGTAGGACACAT
Found at i:10061 original size:79 final size:80
Alignment explanation
Indices: 9926--10098 Score: 183
Period size: 79 Copynumber: 2.2 Consensus size: 80
9916 TCCACCATCA
* * **
9926 GGGATACTCCAA-CCTTAGTCTTATTTTCAAAACATCGATTTTTTACAATCGAGGATACTCCAAC
1 GGGATACTCCAACCCTGAGTCTTATTTTCAAAACACCGATTTTCCACAATCGAGGATACTCCAAC
* ***
9990 CCCGTTATTTTTGAG
66 CCCGCTATTTCCAAG
* * * *
10005 GGGATACTCCAACCCTGA-TTTTA-TTTCTAAAACACCGATTTTCCATC-ATCGGGGATACTGCG
1 GGGATACTCCAACCCTGAGTCTTATTTTC-AAAACACCGATTTTCCA-CAATCGAGGATACTCCA
*
10067 ACCTCGCTATTTCCAAG
64 ACCCCGCTATTTCCAAG
10084 GGGATACTCCAACCC
1 GGGATACTCCAACCC
10099 CATTTTTATC
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
78 4 0.05
79 69 0.88
80 5 0.06
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (80 bp):
GGGATACTCCAACCCTGAGTCTTATTTTCAAAACACCGATTTTCCACAATCGAGGATACTCCAAC
CCCGCTATTTCCAAG
Found at i:11886 original size:154 final size:157
Alignment explanation
Indices: 11698--12039 Score: 381
Period size: 155 Copynumber: 2.2 Consensus size: 157
11688 TGGATAAGAA
*** *
11698 GAACGTGTTTTTGTTGCCAAATTGTGAAAAATTAAATATT-CATACGA-AATCTATGTTTGTCTT
1 GAACGTGTTTTTGTTGCCAAA-TCACAAAAATTAAAGATTAC-TACGACAATCTATGTTTGTCTT
* * * * *
11761 ATATGACGTACAAACTTTCATTCTAAGGAAAAGAATAAAAAG-AAATCTTTTC-TTGGAAACCAA
64 ATATGACATACAAACCTTCATTCTAAAGAAAAGAATAAAAAGAAAAACTTTTCATAGGAAACCAA
** *
11824 AGCATCAAT-TTGTGTATCCCAAAGAAAT
129 AGCATCAATATCATATATCCCAAAGAAAT
* * *
11852 GAACGTGTTTTTGTTGCTAAATCACACAAAATTAAAGATTACTATGACAATCTGTGTTTGTCTTA
1 GAACGTGTTTTTGTTGCCAAATCACA-AAAATTAAAGATTACTACGACAATCTATGTTTGTCTTA
** * * ** *
11917 TATGACATATGAACCTTGATTCTAAAGAAAATAATGGAAAGAAAAACTTTTCATAGGAAACCGAA
65 TATGACATACAAACCTTCATTCTAAAGAAAAGAATAAAAAGAAAAACTTTTCATAGGAAACCAAA
* *
11982 GCATCAATATCATATATCCCAATGAAGT
130 GCATCAATATCATATATCCCAAAGAAAT
*
12010 GAACAT-TTTCTTGTTGCCAAATCACAAAAA
1 GAACGTGTTT-TTGTTGCCAAATCACAAAAA
12040 AAAATTGGAG
Statistics
Matches: 155, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
153 2 0.01
154 36 0.23
155 49 0.32
156 9 0.06
157 25 0.16
158 34 0.22
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (157 bp):
GAACGTGTTTTTGTTGCCAAATCACAAAAATTAAAGATTACTACGACAATCTATGTTTGTCTTAT
ATGACATACAAACCTTCATTCTAAAGAAAAGAATAAAAAGAAAAACTTTTCATAGGAAACCAAAG
CATCAATATCATATATCCCAAAGAAAT
Found at i:12706 original size:157 final size:157
Alignment explanation
Indices: 12517--12805 Score: 397
Period size: 157 Copynumber: 1.8 Consensus size: 157
12507 AAAATTCATG
* * *
12517 TTTGTCTTATATGACAGACGAACTTTAATTTTATA-AAAAATGATGAG-AAAAAAGCTTTTCTTT
1 TTTGTCTTATATGACAGACAAACTTTAATTTTA-AGAAAAATGATAAGCAAAAAAGCCTTTC-TT
* *
12580 GGAAACCAAAG-AATCAATA-TAATGTATCTTAACGAGAAAAATGTGTTTTTGTTGCCAAATCAT
64 GGAAACCAAAGAAAT-AATACT-ATGTATCTTAACAAGAAAAATGTGTTTTTGTTGACAAATCAT
12643 GAAAAATTGAATATTCTTATGGGAATCCGCT
127 GAAAAATTGAATATTCTTATGGGAATCCGCT
* * * * *
12674 TTTGTTTTATATGATAGATAAACTTTGATTTTAAGGAAAATGATAAGCAAAAAAGCCTTTCTTGG
1 TTTGTCTTATATGACAGACAAACTTTAATTTTAAGAAAAATGATAAGCAAAAAAGCCTTTCTTGG
* * *
12739 AAACCAAAGAAATAATACTGTGTATCTTAATAAGGAAAATGTGTTTTTGTTGACAAATCATGAAA
66 AAACCAAAGAAATAATACTATGTATCTTAACAAGAAAAATGTGTTTTTGTTGACAAATCATGAAA
12804 AA
131 AA
12806 ACTAAAGATT
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
156 1 0.01
157 98 0.85
158 16 0.14
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (157 bp):
TTTGTCTTATATGACAGACAAACTTTAATTTTAAGAAAAATGATAAGCAAAAAAGCCTTTCTTGG
AAACCAAAGAAATAATACTATGTATCTTAACAAGAAAAATGTGTTTTTGTTGACAAATCATGAAA
AATTGAATATTCTTATGGGAATCCGCT
Found at i:13272 original size:158 final size:157
Alignment explanation
Indices: 13086--14232 Score: 729
Period size: 158 Copynumber: 7.3 Consensus size: 157
13076 GAAATATATT
* * *
13086 TTTGTCTTATATGATGGATGAACTTTGATTCTAAGGAAAATGATAGGAAGAAAAGCTTTTCCTAG
1 TTTGTCTTATATGACGTATGAACTTTGATTCTAAGGAAAATGATAGGAAGAAAAGCTTTTCTTAG
** * **
13151 AAATTGAAGCATCAATATCATGTATCCTAATAAAAAGAATGTGTTTTTGTTGTCAAATCACAAAA
66 AAA-CAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTTTGTTGTCAAATCACAAAA
*
13216 AAATTGGAGATTACTATGAGAATCAGTG
130 AAATTGGAGATTATTATGAGAATCAGTG
* * * * **
13244 TTTGTCTTATATGACGTATGAACGTTGATTCTAAGAAAAATAATGGGAAGAAAAGCTTTTCATGG
1 TTTGTCTTATATGACGTATGAACTTTGATTCTAAGGAAAATGATAGGAAGAAAAGCTTTTC-TTA
* * * * * * ** * * *
13309 GAAACTAAATCATCGATATCATCTATTCTAAAGAAGAGAACAT-ATTTTGTT-ACAAATCATAAA
65 GAAAC-AAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTTTGTTGTCAAATCACAAA
* * *
13372 AAAAGTTAGAGATTATTATGAGAATCTGAG
129 AAAA-TTGGAGATTATTATGAGAATCAGTG
* * * * * *
13402 TTTATTTTATATGATAG-ACGGACTTTGATTCTAAGGAAAATGATAGGGAA-AAAAGCTTTACTT
1 TTTGTCTTATATGA-CGTATGAACTTTGATTCTAAGGAAAATGATA-GGAAGAAAAGCTTTTC-T
* * * ** * * * *
13465 TGGAAACCAATGCATCAAAATTGTGTATCCTAACGAGAAGAATGTAG-TTTTATTGCCAAATCAT
63 TAGAAA-CAAAGCATCAATATCATGTATCCTAATGAGGAGAATGT-GTTTTTGTTGTCAAATCA-
* * * * ** *
13529 GAAAAACA-TGAAGATGATTACAAGAATCCA-TA
125 CAAAAAAATTGGAGATTATTATGAGAAT-CAGTG
* * * * * * * *
13561 TTTGTCTTATTTGAAGTATGAACTTTAATTATAA-GAAATATGTTAGAAAGAAAAG-ATTTGTTA
1 TTTGTCTTATATGACGTATGAACTTTGATTCTAAGGAAA-ATGATAGGAAGAAAAGCTTTTCTTA
* * ** * ** *
13624 GGAAACCAAAACATCGATATTGTGCATCCTAATGAGGAGAACATGTTTTTGTT-TTAAATCACAA
65 -GAAA-CAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTTTGTTGTCAAATCACAA
* *
13688 AAAAATTGGAGATTTTTATGAGAATCATTG
128 AAAAATTGGAGATTATTATGAGAATCAGTG
* * * * ** * * * * * *
13718 TTTGTCTCATATAAGGGACAAACTTTGATTCTAGGGAAAAAG-TTGAGATGAAACG-TTTTTTTA
1 TTTGTCTTATATGACGTATGAACTTTGATTCTAAGGAAAATGATAG-GAAGAAAAGCTTTTCTTA
* ** * *
13781 GAAAATCAAAGCATCAATATCATCTATCAAAATGAGGTA-AATGTGTTTTTATTG-CTAACTCAC
65 G-AAA-CAAAGCATCAATATCATGTATCCTAATGAGG-AGAATGTGTTTTTGTTGTC-AAATCAC
* ** * *
13844 AAAAAGATTTAAGATTATTAAGAAAATCCA-TG
126 AAAAAAATTGGAGATTATTATGAGAAT-CAGTG
* * * **
13876 TTTATTTTATATGACAG-ATGAACTTTGATTCTATA-AAAAATGAT-GAGAAGAAAAAATTTTCT
1 TTTGTCTTATATGAC-GTATGAACTTTGATTCTA-AGGAAAATGATAG-GAAGAAAAGCTTTTCT
* * * ** **
13938 TAGGAAATCAAGGAATCAATATAATGTATCCTAATGAGGAGAACATGTTTTTGTTACCAAATCAC
63 TA-GAAA-CAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTTTGTTGTCAAATCAC
* * * *
14003 -AAAAGATTGAATATTCTTATGAGAATTC-GTG
126 AAAAAAATTGGAGATTATTATGAGAA-TCAGTG
*** * * * * *
14034 TTTGTCTTATATGATAAACGAAATTTGATTCTAATGAAAATGATGGGAAAAAAAAGCTTTT-TTG
1 TTTGTCTTATATGACGTATGAACTTTGATTCTAAGGAAAATGATAGG-AAGAAAAGCTTTTCTT-
* * * *
14098 GGAAACCATAGCATCAATATCATGCT-T-CTAATGAGGAGAATGTGTTTTTGTTGTGAAATCACG
64 AGAAA-CAAAGCATCAATATCATG-TATCCTAATGAGGAGAATGTGTTTTTGTTGTCAAATCACA
* * *
14161 AAAAAATTAGAGATTACTATGAGAATCCGTG
127 AAAAAATTGGAGATTATTATGAGAATCAGTG
* * * *
14192 TTTGTCTTGTATGACATATGAACCTTGATTCTAAAGAAAAT
1 TTTGTCTTATATGACGTATGAACTTTGATTCTAAGGAAAAT
14233 AATGAGAAAT
Statistics
Matches: 749, Mismatches: 198, Indels: 84
0.73 0.19 0.08
Matches are distributed among these distances:
156 11 0.01
157 146 0.19
158 415 0.55
159 161 0.21
160 10 0.01
161 6 0.01
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.33
Consensus pattern (157 bp):
TTTGTCTTATATGACGTATGAACTTTGATTCTAAGGAAAATGATAGGAAGAAAAGCTTTTCTTAG
AAACAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTTTGTTGTCAAATCACAAAAA
AATTGGAGATTATTATGAGAATCAGTG
Found at i:14437 original size:20 final size:20
Alignment explanation
Indices: 14404--14444 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14394 AAAGCTTTTC
14404 TTTGGAAACCAATGCATCAA
1 TTTGGAAACCAATGCATCAA
* *
14424 TTTGGGAACTAATGCATCAA
1 TTTGGAAACCAATGCATCAA
14444 T
1 T
14445 ATCATGTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (20 bp):
TTTGGAAACCAATGCATCAA
Found at i:15785 original size:156 final size:156
Alignment explanation
Indices: 15481--15826 Score: 379
Period size: 156 Copynumber: 2.2 Consensus size: 156
15471 TGTTGACAAG
*
15481 AAAAGCTTTTCTTGAAAAACCAAAGCATCAATATCATGTATCTCAATGGAAGAACATTTTTTTGT
1 AAAAGCTTTTCTTG-GAAACCAAAGCATCAATATCATGTATCTCAATGGAAGAACATTTTTTTGT
* * * *
15546 TGCCAAATCATGAAAAATTGAATACTCTTATAAGAATCCATGTTTGTCTTATGTGATAGACAAAC
65 TGCCAAATCATGAAAAATTGAATA-TATTACAAGAATCCATGTTTGTCTTATATGAGAGACAAAC
*
15611 TTTGATTCCAAGGAAAATGATGAGAAAA
129 TTTGATTCCAAGAAAAATGATGAGAAAA
* *
15639 AAAAGCTTTTCTTGGAAGCCAAAGCAAT-AATATCATGTATGCT-AA-GG-AGAATATGTTTTTT
1 AAAAGCTTTTCTTGGAAACCAAAGC-ATCAATATCATGTAT-CTCAATGGAAGAACAT-TTTTTT
* *
15700 -TTGCCAAATCATGAAAAAAATTAGAGAT-TATT-CAAGAATCTGA-GTTTGTTTTATATGACGA
63 GTTGCCAAATCATG--AAAAATT-GA-ATATATTACAAGAATC-CATGTTTGTCTTATATGA-GA
*** *
15761 G-CAAACTTTGATTTTGAGAAAAATGATGGGAAAA
122 GACAAACTTTGATTCCAAGAAAAATGATGAGAAAA
15795 AAAAGCTTTTCTTTGGAAA-CAAATGCATCAAT
1 AAAAGCTTTTC-TTGGAAACCAAA-GCATCAAT
15827 TACCTTATCC
Statistics
Matches: 161, Mismatches: 15, Indels: 25
0.80 0.07 0.12
Matches are distributed among these distances:
155 19 0.12
156 73 0.45
157 47 0.29
158 20 0.12
159 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (156 bp):
AAAAGCTTTTCTTGGAAACCAAAGCATCAATATCATGTATCTCAATGGAAGAACATTTTTTTGTT
GCCAAATCATGAAAAATTGAATATATTACAAGAATCCATGTTTGTCTTATATGAGAGACAAACTT
TGATTCCAAGAAAAATGATGAGAAAA
Found at i:16672 original size:312 final size:314
Alignment explanation
Indices: 16267--16949 Score: 1088
Period size: 312 Copynumber: 2.2 Consensus size: 314
16257 GAAATCAAAT
* * * ***
16267 CATCAATATCTTGTATTCCAA-CAAGGAAAATGGGTTTTTGTTGTCAAATCATG-AAAAAATTGA
1 CATCAATATCGTGTATCCCAATGAA-GAAAATGAAATTTTGTTGTCAAATCATGAAAAAAATTGA
16330 AGATTACTATAAAATCCATGTTTGTCTTATATGATGTAAGAACCTTGATTCTTAAGAAAATAATG
65 AGATTACTATAAAATCCATGTTTGTCTTATATGATGTAAGAACCTTGATTCTTAAGAAAATAATG
*
16395 GGAAGAAAAATTTTCCATGGGAAACCATATCTTCAATATCATGTATCCCATGATAAGAACATATT
130 GGAAGAAAAATTTTCCATGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATT
*
16460 TTTGTTGACAAATCATGAA-AAATTGAAGATTATTATGAGAATTTGAGTTTGTTTTAT-TGATTG
195 TTTGTTGACAAATCAT-AAGAAATTGAAGATTATTATAAGAATTTGAGTTTGTTTTATATGATTG
* *
16523 ACGAACTTTGATTCTAAGTAAAATGATAGAAAAACAACT-TTTTTGGTAACTAATG
259 ACAAACTTTGATTCTAAGTAAAATGATAGAAAAACAACTCTTTTTAGTAACTAATG
** * * *
16578 CATCAATATCGTGTATCTTAATGATGAAAATGCAATTTTGTTGTCAAATCATGAAAAAAATTGCA
1 CATCAATATCGTGTATCCCAATGAAGAAAATGAAATTTTGTTGTCAAATCATGAAAAAAATTGAA
* *
16643 GATTACTATGAATTCCATGTTTGTCTTATATGATGTAAGAACCTTGATTCTTAAGAAAATAATGG
66 GATTACTATAAAATCCATGTTTGTCTTATATGATGTAAGAACCTTGATTCTTAAGAAAATAATGG
16708 GAAGAAAAATTTTCCATGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATTT
131 GAAGAAAAATTTTCCATGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATTT
*
16773 TTGTTGACAAATCATAAGAAATTGGAGATTATTATAAGAATTTGAGTTTGTTTTATATGATTGAC
196 TTGTTGACAAATCATAAGAAATTGAAGATTATTATAAGAATTTGAGTTTGTTTTATATGATTGAC
* * *
16838 AAACTTTGATTCTAAGTAAAATGATAGGAAAACACCTCTTTTTAGTAACTAATT
261 AAACTTTGATTCTAAGTAAAATGATAGAAAAACAACTCTTTTTAGTAACTAATG
* ** *
16892 CATCAATATCGTGTATCCCAATGAAGAAAATGAAATTTTATTACCAATTCATGAAAAA
1 CATCAATATCGTGTATCCCAATGAAGAAAATGAAATTTTGTTGTCAAATCATGAAAAA
16950 CTTGGAGATA
Statistics
Matches: 339, Mismatches: 28, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
311 44 0.13
312 189 0.56
313 42 0.12
314 64 0.19
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (314 bp):
CATCAATATCGTGTATCCCAATGAAGAAAATGAAATTTTGTTGTCAAATCATGAAAAAAATTGAA
GATTACTATAAAATCCATGTTTGTCTTATATGATGTAAGAACCTTGATTCTTAAGAAAATAATGG
GAAGAAAAATTTTCCATGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATTT
TTGTTGACAAATCATAAGAAATTGAAGATTATTATAAGAATTTGAGTTTGTTTTATATGATTGAC
AAACTTTGATTCTAAGTAAAATGATAGAAAAACAACTCTTTTTAGTAACTAATG
Found at i:16848 original size:157 final size:159
Alignment explanation
Indices: 16097--16859 Score: 598
Period size: 156 Copynumber: 4.9 Consensus size: 159
16087 AAGCTTTTTT
* * * * * * * *
16097 TGGGAAACCAAAGCATCAGTATAATGTATCTCAATGAGT-AGAACATGTTTTTGTTGCCAAATGA
1 TGGGAAACCATAGCTTCAATATCATGTATC-CCATGA-TAAGAACATATTTTTGTTGACAAATCA
* * * * * * * * *
16161 TAAAAAAATTAAAGATTCCTATGAGAA-TCCATATTTGTCTTAAATGATAG-ATGAACTTTAATT
64 TGAAAAAATTGAAGATTACTATAAGAATTCCATGTTTGTCTTATATGAT-GTAAGAACCTTGATT
* ***
16224 CTAAG-AAAATGATGGGAAGAGAAGCCTTT-C-
128 CTAAGTAAAATAATGGGAAGA-AAAATTTTCCA
** * * * * * * * * * *
16254 TTAGAAATCAAATCATCAATATCTTGTATTCCA--ACAAGGAAAATGGGTTTTTGTTGTCAAATC
1 TGGGAAACCATAGCTTCAATATCATGTATCCCATGATAA-GAACAT--ATTTTTGTTGACAAATC
16317 ATGAAAAAATTGAAGATTACTATAA-AA-TCCATGTTTGTCTTATATGATGTAAGAACCTTGATT
63 ATGAAAAAATTGAAGATTACTATAAGAATTCCATGTTTGTCTTATATGATGTAAGAACCTTGATT
16380 CTTAAG-AAAATAATGGGAAGAAAAATTTTCCA
128 C-TAAGTAAAATAATGGGAAGAAAAATTTTCCA
*
16412 TGGGAAACCATATCTTCAATATCATGTATCCCATGATAAGAACATATTTTTGTTGACAAATCATG
1 TGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATTTTTGTTGACAAATCATG
* * ** * * *
16477 -AAAAATTGAAGATTATTATGAGAATTTGA-GTTTGTTTTAT-TGAT-TGACGAACTTTGATTCT
66 AAAAAATTGAAGATTACTATAAGAATTCCATGTTTGTCTTATATGATGT-AAGAACCTTGATTCT
* *
16538 AAGTAAAATGAT-AGAA-AAACAACTTTT---
130 AAGTAAAATAATGGGAAGAAA-AA-TTTTCCA
* * * * * ** *
16565 TTGGTAACTA-ATGCATCAATATCGTGTATCTTAATGATGAA-AATGCA-A-TTTTGTTGTCAAA
1 TGGGAAACCATA-GCTTCAATATCATGTATC-CCATGAT-AAGAA--CATATTTTTGTTGACAAA
*
16626 TCATGAAAAAAATTGCAGATTACTAT--GAATTCCATGTTTGTCTTATATGATGTAAGAACCTTG
61 TCATG-AAAAAATTGAAGATTACTATAAGAATTCCATGTTTGTCTTATATGATGTAAGAACCTTG
16689 ATTCTTAAG-AAAATAATGGGAAGAAAAATTTTCCA
125 ATTC-TAAGTAAAATAATGGGAAGAAAAATTTTCCA
16724 TGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATTTTTGTTGACAAATCAT-
1 TGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATTTTTGTTGACAAATCATG
* * * ** * *
16788 AAGAAATTGGAGATTATTATAAGAATTTGA-GTTTGTTTTATATGAT-TGACA-AACTTTGATTC
66 AAAAAATTGAAGATTACTATAAGAATTCCATGTTTGTCTTATATGATGT-A-AGAACCTTGATTC
16850 TAAGTAAAAT
129 TAAGTAAAAT
16860 GATAGGAAAA
Statistics
Matches: 486, Mismatches: 79, Indels: 82
0.75 0.12 0.13
Matches are distributed among these distances:
152 1 0.00
153 22 0.05
154 35 0.07
155 29 0.06
156 155 0.32
157 151 0.31
158 61 0.13
159 28 0.06
160 4 0.01
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (159 bp):
TGGGAAACCATAGCTTCAATATCATGTATCCCATGATAAGAACATATTTTTGTTGACAAATCATG
AAAAAATTGAAGATTACTATAAGAATTCCATGTTTGTCTTATATGATGTAAGAACCTTGATTCTA
AGTAAAATAATGGGAAGAAAAATTTTCCA
Found at i:16957 original size:157 final size:153
Alignment explanation
Indices: 16427--16970 Score: 484
Period size: 156 Copynumber: 3.5 Consensus size: 153
16417 AACCATATCT
* * * *
16427 TCAATATCATGTATCCC-ATGATAAGAACAT-ATTTTTGTTGACAAATCATGAAAAATTGAAGAT
1 TCAATATCGTGTATCCCAATG--AAGAAAATGAATTTTGTT-ACAAATCATGAAAAATTGGAGAT
* *
16490 TATTATGAGAATTTGAGTTTGTTTTAT-TGATTGACGAACTTTGATTCTAAGTAAAATGATAGAA
63 TATTATGAGAATTTGAGTTTGTTTTATATGATTGACAAACTTTGATTCTAAGTAAAATGATAGGA
16554 AAACAACTTTTTTGGTAACTAATGCA
128 AAACAACTTTTTTGGTAACTAATGCA
** * * *
16580 TCAATATCGTGTATCTTAATGATGAAAATGCAATTTTGTTGTCAAATCATGAAAAAAATTGCAGA
1 TCAATATCGTGTATCCCAATGAAGAAAATG-AATTTTGTT-ACAAATCATG--AAAAATTGGAGA
* ** * * *
16645 TTACTAT--GAATTCCATGTTTGTCTTATATGA-TGTA-AGAACCTTGATTCTTAAG-AAAATAA
62 TTATTATGAGAATTTGA-GTTTGTTTTATATGATTG-ACA-AACTTTGATTC-TAAGTAAAATGA
* * * * * *
16705 TGGGAAGAA-AAATTTTCCATGGGAAAC-CATAGCT
123 TAGGAA-AACAACTTTT---TTGGTAACTAAT-GCA
* * *
16739 TCAATATCATGTATCCC-ATGATAAGAACAT-ATTTTTGTTGACAAATCAT-AAGAAATTGGAGA
1 TCAATATCGTGTATCCCAATG--AAGAAAATGAATTTTGTT-ACAAATCATGAA-AAATTGGAGA
*
16801 TTATTATAAGAATTTGAGTTTGTTTTATATGATTGACAAACTTTGATTCTAAGTAAAATGATAGG
62 TTATTATGAGAATTTGAGTTTGTTTTATATGATTGACAAACTTTGATTCTAAGTAAAATGATAGG
* * *
16866 AAAACACCTCTTTTTAGTAACTAATTCA
127 AAAACAACT-TTTTTGGTAACTAATGCA
* *
16894 TCAATATCGTGTATCCCAATGAAGAAAATGAAATTTTATTACCAATTCATGAAAAACTTGGAGAT
1 TCAATATCGTGTATCCCAATGAAGAAAATG-AATTTTGTTA-CAAATCATGAAAAA-TTGGAGAT
*
16959 AATTATGAGAAT
63 TATTATGAGAAT
16971 CCATGTTTGC
Statistics
Matches: 307, Mismatches: 52, Indels: 60
0.73 0.12 0.14
Matches are distributed among these distances:
152 6 0.02
153 14 0.05
154 34 0.11
155 37 0.12
156 90 0.29
157 64 0.21
158 34 0.11
159 22 0.07
160 6 0.02
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (153 bp):
TCAATATCGTGTATCCCAATGAAGAAAATGAATTTTGTTACAAATCATGAAAAATTGGAGATTAT
TATGAGAATTTGAGTTTGTTTTATATGATTGACAAACTTTGATTCTAAGTAAAATGATAGGAAAA
CAACTTTTTTGGTAACTAATGCA
Found at i:17826 original size:14 final size:15
Alignment explanation
Indices: 17807--17835 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17797 AAATGTATCA
17807 ATACAA-TTGCAATG
1 ATACAACTTGCAATG
17821 ATACAACTTGCAATG
1 ATACAACTTGCAATG
17836 TATCAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (15 bp):
ATACAACTTGCAATG
Found at i:20215 original size:13 final size:13
Alignment explanation
Indices: 20197--20222 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20187 ACACCAAAGT
20197 ATGTATCGATACA
1 ATGTATCGATACA
20210 ATGTATCGATACA
1 ATGTATCGATACA
20223 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:20220 original size:33 final size:33
Alignment explanation
Indices: 20178--20242 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
20168 TAGCCAAACT
* *
20178 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
20211 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
20243 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:22480 original size:22 final size:21
Alignment explanation
Indices: 22453--22502 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
22443 TTGCAAGTTG
* *
22453 AAATAAAGAAGTTGGCTAAGGA
1 AAATAAAG-AGTTAGCTAAGAA
*
22475 AAATAATGAGTTAGCTAAGAA
1 AAATAAAGAGTTAGCTAAGAA
22496 AAATAAA
1 AAATAAA
22503 AACTTGCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.20, T:0.20
Consensus pattern (21 bp):
AAATAAAGAGTTAGCTAAGAA
Found at i:26563 original size:20 final size:20
Alignment explanation
Indices: 26520--26565 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
26510 AAATCTTTTG
26520 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
26541 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
26561 CAAAA
1 CAAAA
26566 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:29011 original size:28 final size:28
Alignment explanation
Indices: 28963--29020 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
28953 CCAAACTTGT
* *
28963 ATCGATACACCAAAGTATGTATCGATAC
1 ATCGATACACAAAAATATGTATCGATAC
*
28991 ATCGATACACAAAAA-ATTGTATTGATAC
1 ATCGATACACAAAAATA-TGTATCGATAC
29019 AT
1 AT
29021 TGGCTTGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (28 bp):
ATCGATACACAAAAATATGTATCGATAC
Found at i:30695 original size:477 final size:475
Alignment explanation
Indices: 29773--33102 Score: 3500
Period size: 477 Copynumber: 7.0 Consensus size: 475
29763 TAAGCTTTCA
* ** *
29773 GTCATGTATCCTAATGAA-AGGATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATTGACACTGTT
1 GTCATGTATCCTAATGAAGA-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGACTGTT
* * * * *
29837 ACGAGAATCGTTGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGAAAAATAGGGTAATGAA
65 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-A
* * * *
29902 AAAATTTTCACGCAAAAGAAAATCATCAATACCATTTATCTTAATGAAGAGAATGTGTTTATAGT
129 AAAATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGT
* * **
29967 GGCTAATCTCAAAAATGAATGAAGATCATTACTAGAATCCATTTTTGGCTTTTTTGAGGCACAAA
194 GGCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACAAA
* * * * *
30032 CTTATACTTTATAAAAATTGAGGGGAAGAAAGCCTTTCTTTCAAAACCAAAGCTTCAATAACGTG
258 CTTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTG
* * * * *
30097 TGTCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAAAAATCGAGATTAGTATGACAA
323 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACAA
* * * *
30162 TTCATGTTTGTTTTTTTTTAGAGACAAACTTTGATTCTATAAAAAACG-GTGGAAAGAAAAGCAT
388 TTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-GAGTGGAAAGAAAAGCTT
*
30226 TTCTTGCGAGC-CCAAAGTATCAAT
452 TTCTTGCGA-CACCAAAGCATCAAT
* * * * *
30250 GTCATGTATCCTAAAGAAGAGAATCTATTTTTGGTTCACAATCTTGAAATGAAAGGAGACTGTTA
1 GTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGACTGTTA
* * * * * *
30315 TGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTGACTTTAAGGAAAATAGGGTAATGAAA
66 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * *
30380 AATTTTTCACGCAAAAGAAAATCATCAATACCATTTATCCAAATGAAGAGAATGTGTTTATAGTG
131 AA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG
* **
30445 GCTAATCTCAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTTTTTTGAGGCACAAAC
195 GCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACAAAC
* * * * * *
30510 TTAGACTTTATAAAAAATGAGGGGAAGAAAGCCTTTCTTTCAAAACCAAAGCGTTAGTATCGTGT
259 TTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGT
* *
30575 ATCCTTACGAGAAGACTATGTTTATGGTGCATAATCCTAAAAAGAATAGGGATTAGTATGACAAT
324 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACAAT
* *
30640 TCATGTTTGTTTTATTTAAGAGACAAAGCTTCG-TTCTATGAAAAAGAAG-GGAAAGAAAAGCTT
389 TCATGTTTGTTTTATTTAAGAGACAAA-CTTTGATTCTATCAAAAAG-AGTGGAAAGAAAAGCTT
*
30703 TTCTTGCGACACCAAAGCATTAAT
452 TTCTTGCGACACCAAAGCATCAAT
* * * * ** * * * *
30727 GTCATGTAACCGAAAGAAGGGAAAATGTTTTTGGTTCACAATCTTGAAATGGAAGAAGACTGTTA
1 GTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGACTGTTA
* * * * * *
30792 TGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTGACTTTAAGGAAAATATGGCGAAGAAA
66 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * *
30857 AGATTTCCATGCAAGATAAAATCATCAATATCTTTTATCCTAAT-AAGGAGAATGTGTTTATAAT
131 A-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAA-GAGAATGTGTTTATAGT
* * * ** *
30921 GCCTAATCACAAATTGAATGAAGATCATTGCTAGAATCCATGTTTGGCTCATTTGAGGTGCGAAC
194 GGCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACAAAC
* * * * *
30986 TTAGACTTTACAAAAATTTG-GGGGAAAAAAGCCTTTCTTGT-GAAAGCAAAGCGTTAGTATCGT
259 TTAGACTTTACAAAAA-TTGAGGGGAAGAAAGCCTTTCTT-TCGAAACCAAAGCATCAATATCGT
* * * * *
31049 GTATCCTTGTGAGAAGACTATGTTCATGATACCTAATCCTAAAAAGAATAAGGATTAGTATGACA
322 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACA
**** ** * *
31114 ATTCATGTTTACCCTA-TTAAGAGACAAACCCTCATTCTATCAAAAACAAG-GGAAAGAAAAGCT
387 ATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-GAGTGGAAAGAAAAGCT
*
31177 TTTCTTGCGACACCAAAGCATTAAT
451 TTTCTTGCGACACCAAAGCATCAAT
* * * * * * **
31202 GTCATGTAGCCTAA-AAAGGGAAAGTGTTTTTGGTTCCCAATCATCAAAAGAATAGG-GACTACT
1 GTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA-AGGAGACTGTT
** * * **
31265 AAAAGAATCAATGCTTGTCTTATTTAAGGGATTAAAACTTTGATTTTAAACAAAATAGGGCAAAG
65 ACGAGAATCGATGCTTGTCTTATTTAAGGGA-T-GAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
31330 AAAAGATTTTCATACAAAATAAAATCATCAATATCTTTTATCCTAATGAGGAAAATGTGTTTATA
128 AAAA-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATA
* * * * *
31395 ATGCCTAATCACAAACTGAATGAAGATCATTACTAGAATCCATTTTTGGCTCATTTGAGGCACGA
192 GTGGCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACAA
* * * * * * *
31460 ACTTAGATTTTACAAAAATTTAGGAGAAAAAAACCTTTCTTTTGAAACCAAAGCATCAATATTGT
257 ACTTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGT
* ** * * * *
31525 GTATCCTTATGTGAAGACTATGTTTATGGTGTGTAATCTTGAAAATAATAGGGATTAGTATGACT
322 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACA
* * *
31590 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAATG-GTGAAAAGAAAAG-T
387 ATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-GAGTGGAAAGAAAAGCT
* * **
31653 TTTTTTGCTACATTAAAGCATCAAT
451 TTTCTTGCGACACCAAAGCATCAAT
* **
31678 GTCATGTATCCTAATGAA-AGAATTGTGTTTTTGGTTCCCCATCTTGAAAAGAGTGGAGACTGTT
1 GTCATGTATCCTAATGAAGAGAA-TGTGTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGACTGTT
* * *
31742 ACGAGAATCAATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAACGAAAATAGGGCAAAGAA
65 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * * * * *
31807 AAGATTTCCATGAAAAAGAAAATCATCAATTTCTTTTACCCTAACG-CGAAGATTGTGTTTTTTT
130 AA-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAG-AGAATGTG--TTTAT
* * * ** * * *
31871 A-T-G-TAATCCCAAAATGAATGATGATCATTACTAGGATTAATGTTTGTCTCATTAGAGGCACG
191 AGTGGCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACA
* * * * * *
31933 AACTTAGACTCTGCAAAAATTG-GTGGGAAAAAATCCTTTATTGT-GAAACCAAACCATCAATAT
256 AACTTAGACTTTACAAAAATTGAG-GGGAAGAAAGCCTTTCTT-TCGAAACCAAAGCATCAATAT
** * ** * * * *
31996 CAAGTATTCGAACGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAATAAT-GGGCATTAGTAT
319 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGG-ATTAGTAT
* * * * * * *
32060 GAGC-ATTCATGTTTATTTTATGTGAGAGACAAACTTTGATTCTATAAAAAACATTGTAAAGAAA
383 GA-CAATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGAGTGGAAAGAAA
** *
32124 AGCTTTTCTTATGGCACCAAAGCATCAAT
447 AGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * *** **
32153 GTCATGTACCCTAATGAAGGGAATGTGTTTTTGCTTCCTAATCTTTGAAAAGCTTGGAGACAATT
1 GTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATC-TTGAAAAGAAAGGAGACTGTT
* * * *
32218 ACAAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGAAAAATTGGGCAAAGAA
65 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * *
32283 ATGATTTCCATGCAAAAGAAAATCGTCAGTATCATTTATCCTAATGAGGAGAATATGTTTATAGT
130 A-AATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGT
* *
32348 GCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACAAAC
194 GGCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACAAAC
* * * * * *
32413 CTAGACTTTACCAAAA-TGAGGGGGAAGAAAGCTTTTCTTGCAAAACCGAAGCATCAATATC---
259 TTAGACTTTACAAAAATTGA-GGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTG
* * * ** * * *
32474 -AT--GTATGAGAAGACTATCTTTTTGGTGTTTAATCCTGAAAAA-AAAAGGGGATTAGTACGAG
323 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATA-GGGATTAGTATGAC
* * * * * * *
32535 TACTCATGTTTATCTTATATAAGAGATAAACTTTGATTCTATCAAAAATG-GTGGAATGAAAAGC
386 AATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-GAGTGGAAAGAAAAGC
* **
32599 TTTTTTTATGACACCAAAGCATCAAT
450 TTTTCTTGCGACACCAAAGCATCAAT
* * * * *
32625 GTCATGTATCCTAATGAA-AGGATTGTGTTTTTGGTTCCCAATCCTAAAAAGAATA-GAGGCTAT
1 GTCATGTATCCTAATGAAGA-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA-AGGAGACTGT
* * * * *
32688 TATGAAAATCAATGCTTGTCTTATTTAAGGGAATAAAACTTTGATTTTTAA--AAAATAGGGTAA
64 TACGAGAATCGATGCTTGTCTTATTTAAGGG-AT-GAACTTTGA-TTTTAAGGAAAATAGGGCAA
* * * * * * *
32751 TA-AAAAGATTTGCATGCAAAA-AAAATCATCAGTAACATTTTTCCAAATGAGGAGAATGTGCTT
126 -AGAAAA-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTT
* * * * * *
32814 ATAGTGGCTAATCACAAAATGAATGAAGATTAATACTATAATCCTTGCTTAGCTCATTTGAGGCA
189 ATAGTGGCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCA
* * *
32879 CAAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTCTTTGGAAACCAAAGCATCAATAT
254 CAAACTTAGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCAATAT
* * * * *
32944 CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTATG
319 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATG
*
33009 ACAATTCATCTTTGTTTTATTTAAGAGACAAA-TTTGATTCTATCAAAAATG-GTGGAAAGAAAA
384 ACAATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-GAGTGGAAAGAAAA
* * *
33072 GCATTTCTTGCGACCCCAAAGTATCAAT
448 GCTTTTCTTGCGACACCAAAGCATCAAT
33100 GTC
1 GTC
33103 CTAATTCATT
Statistics
Matches: 2414, Mismatches: 377, Indels: 126
0.83 0.13 0.04
Matches are distributed among these distances:
471 214 0.09
472 156 0.06
473 18 0.01
474 278 0.12
475 269 0.11
476 643 0.27
477 828 0.34
478 8 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
GTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGACTGTTA
CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
AATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGG
CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACAAACTT
AGACTTTACAAAAATTGAGGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTAT
CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACAATTC
ATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGAGTGGAAAGAAAAGCTTTTCT
TGCGACACCAAAGCATCAAT
Found at i:34071 original size:420 final size:420
Alignment explanation
Indices: 33294--34131 Score: 1026
Period size: 419 Copynumber: 2.0 Consensus size: 420
33284 GGAACCAAAA
* **
33294 ACACATTCCCTTCATTACGATAAATGACATTAATGCTTTGGGATCACAAGAAATGTTTCTTTTTG
1 ACACATTCCCTTCATTACGATAAACGACATTAATGCTTTGGGATCACAAGAAATGTTTCTTTTCA
* * ** * *
33359 TCGTTTTTGATAGAATTGAAGTTTGTCTCTTAAATAAGACAAACAAGAGAGGTCATACTAATCCC
66 CCATTTTTGATAGAATCAAAATTTGTCTCCTAAATAAGACAAACAAGAGAGGTCATACTAATCCC
* ** **
33424 TATTTTTTTCAGGATTAGGGTCCATAAACATAGTCTTCTAATAATGATACACGATATTGATGCAT
131 CATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAATGATACACGATATTGACACAT
* * *
33489 TGGTTTTGAAAGAAAGGATTTCTTCCCCTATATTTTTGTAAAGTCTAAGTTCATGCCAAAAATTA
196 TGGTTTTCAAAGAAAGGATTTCTTCCCCTAAATTTTTGTAAAGTCTAAGTTCATGCCAAAAATGA
* * * *
33554 ACCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAATACATTCTC
261 ACCAAACATGGATTCTAATAATGATCTTCATTCATTTTATAATTAGACACTATAAACACATTCTC
** * *
33619 CTCCTTAGGATAAAAGATATTGACGATTTTTTTTTGCATGG-AA-ATCTTCTTTGCCTTATTTTC
326 CTAATTAGGATAAAAGATATTGACGATTTTTTTTTACATGGAAATATCTTCTTTGCCATATTTTC
**
33682 TTTAAAATCAAAGTTCATCCCTTAAATAAG
391 TCGAAAATCAAAGTTCATCCCTTAAATAAG
* * * * * *
33712 ACACATTCCCTTTATTAGGATACACGATATTGATGCTTTGGGGTCACAAGAAATGCTTTTCTTTT
1 ACACATTCCCTTCATTACGATAAACGACATTAATGCTTTGGGATCACAAGAAATG--TTTCTTTT
* ** *
33777 CACCATTTTTGATAGAATCAAAATTTGTTTCCTAAATAAGACAAACATTA-ATTGTCATACTAAT
64 CACCATTTTTGATAGAATCAAAATTTGTCTCCTAAATAAGACAAACAAGAGA-GGTCATACTAAT
* * * * * * *
33841 CCCCATTTTTTTTAGGATTAGGCACCGTCAACATAGTCTTCTCAT-TTGGATATATGATATTGAC
128 CCCCATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAT-GATACACGATATTGAC
* * * **
33905 ACTTTGG-TTTCACAAGAAA-GACTTT-TTCCCTTAAATTTTTGTAAAGTCTAAGTTCGTGCCTC
192 ACATTGGTTTTCA-AAGAAAGGA-TTTCTTCCCCTAAATTTTTGTAAAGTCTAAGTTCATGCCAA
* * * * *
33967 AAATGAGCCAAAGATGGATTCTAATAATGATCTTCATTTATTTTGTAATTAGACACTATAAACAT
255 AAATGAACCAAACATGGATTCTAATAATGATCTTCATTCATTTTATAATTAGACACTATAAACAC
* ** *
34032 GTTCTCCTAATTAGGATAAATA-ATATTGGTGATTTTTTTTTACATGGAAATATTTTCTTTGCCA
320 ATTCTCCTAATTAGGATAAA-AGATATTGACGATTTTTTTTTACATGGAAATATCTTCTTTGCCA
*
34096 TATTTTCTCGAAAATCAATGTTCATCCCTTAAATAA
384 TATTTTCTCGAAAATCAAAGTTCATCCCTTAAATAA
34132 AACAAGCATC
Statistics
Matches: 352, Mismatches: 59, Indels: 15
0.83 0.14 0.04
Matches are distributed among these distances:
418 48 0.14
419 134 0.38
420 126 0.36
421 44 0.12
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (420 bp):
ACACATTCCCTTCATTACGATAAACGACATTAATGCTTTGGGATCACAAGAAATGTTTCTTTTCA
CCATTTTTGATAGAATCAAAATTTGTCTCCTAAATAAGACAAACAAGAGAGGTCATACTAATCCC
CATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAATGATACACGATATTGACACAT
TGGTTTTCAAAGAAAGGATTTCTTCCCCTAAATTTTTGTAAAGTCTAAGTTCATGCCAAAAATGA
ACCAAACATGGATTCTAATAATGATCTTCATTCATTTTATAATTAGACACTATAAACACATTCTC
CTAATTAGGATAAAAGATATTGACGATTTTTTTTTACATGGAAATATCTTCTTTGCCATATTTTC
TCGAAAATCAAAGTTCATCCCTTAAATAAG
Found at i:35531 original size:475 final size:475
Alignment explanation
Indices: 33716--37216 Score: 3521
Period size: 475 Copynumber: 7.3 Consensus size: 475
33706 AATAAGACAC
* * * * *
33716 ATTCCCTTTATTAGGATACACGATATTGATGCTTTGGGGTCACAAGAAATGCTTTTCTTTTCACC
1 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
* * * * *
33781 ATTTTTGATAGAATCAAAATTTGTTTCCTAAATAAGACAAACATTAATTGTCATACTAATCCCCA
66 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAAATGAATAGTCATACTAATCCCCA
* * * * * * **
33846 TTTTTTTTAGGATTAGGCACCGTCAACATAGTCTTCTCATTTGGATATATGATATTGACACTTTG
131 TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
* * *
33911 GTTTCACAAGAAAGACTTTTTCCCTTAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCC
196 GTTTCACAAGAAAGGCTTTTTCCCTCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGCC
* * * * ** *
33976 AAAGATGGATTCTAATAATGATCTTCATTTATTTTGTAATTAGACACTATAAACATGTTCTCCTA
261 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTC
* * * * * * * *
34041 ATTAGGATAAATAATATTGGTGATTTTTTTTTACATGGAAATATTTTCTTTGCCATATTTT-CTC
326 ATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCTTTACCCTATTTTCCT-
* * * ** * * *
34105 GAAAATCAATGTTCATCCCTTAAATAAAACAAGCATCGATTCTCGTAACCGTCACCAATCTTTTC
390 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTA
34170 AAGATTGGGAACCAAAAAC-T
455 AAGATTGGGAACCAAAAACAT
* ** * ** ** * * *
34190 CATTTCCTTTTTTAGGATACATGGCATTGATGCTTTGTTGTCAAAAGAAAGGCTTTTCTTTCTAA
1 -ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCAC
* * * * * *
34255 TATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCAC
65 CATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAAATGAATAGTCATACTAATCCCC
* * * * *
34320 ATTCTTTTTCGGATTGGGCACCATAAGCA-AGGTCTTCGCATTAGGATAAACGATATTGATGCTT
130 ATTCTTTTTAGGATTAGGCACCATAAACATA-GTCTTCTCATTAGGATACACGATATTGATGCTT
** ** * *
34384 TGGTTTTGCAAGAAAGG-TTTTTTTCTCACCAATTTTTGTAATGTCTAAGTTCGTACCTCAAATA
194 TGGTTTCACAAGAAAGGCTTTTTCCCTCA--AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATA
* * * *
34448 AGCCAAACATGGATTCTAGTAATGATCTTCAATCATTTTATAATTAGGCACTATAAAAACATTTT
257 AGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCT
** * *
34513 CCTCATTAGGATAAAAT-ATATTGACAATTTTCTTTTGC-CTGGAAACCTTTTCTTTCCCCTATT
322 CCTCATTAGGAT-AAATGATATTGATGATTTTCTTTTGCAC-GGAAATCTTTTCTTTACCCTATT
* * * *
34576 TTCCTTGAAATCAATGTTCGTCCCTTAAATAAGACAAGTATCGATTCTCGTAATAGTCTCCATTC
385 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC
** ** * * *
34641 TTTCCAAGATTCAGAACTAAAAGCAC
450 TTTTAAAGATTGGGAACCAAAAACAT
* * * * * *
34667 ATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCGTAAAAAAAGCTTTTCTTTCTACC
1 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
* * * * *
34732 GTTTTTTATAGAATCAACGTTTGTCTCTCTTAAAAAAAACAAACAA-GAATAGTCATACTAATCC
66 ATTTTTGATAGAATCAAAGTTTGT-T-TCTTAAATAAGACAAA-AATGAATAGTCATACTAATCC
* * * * *
34796 CTATTCTTTTTAAGATTAGGCACCATAAACATAATCTTCTCATAAGGGTACACGATATTGATGCT
128 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
* * * * *
34861 TTGGTTTCTCAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAGTTCATGCC-AAAATT
193 TTGGTTTCACAAGAAAGGCTTT-TTCCCTCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA-T
* * * *
34925 GAGCCAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGCACTATAAATACATTC
256 AAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTC
* * ** * * *
34990 TCCTCCTTAGGATAAAAGATATTGACAATTTTCTCTTGCATGGAAATCTTTTTTTTACCCTATTT
321 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCTTTACCCTATTT
* *
35055 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCT
386 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCT
*
35120 TTTAAAGATTGGGAACTAAAAACAT
451 TTTAAAGATTGGGAACCAAAAACAT
* *
35145 ATTCCCTTCATTAGGATACATGAGATTAATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
1 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
* * * *
35210 ATTTTTGATAGAATCAAAATTTGTTTCTTAAATAAGACAAAAATTAATTGTCATGCTAATCCCCA
66 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAAATGAATAGTCATACTAATCCCCA
* ** * * * * **
35275 TTCTTTTTAGAATTAGGCACTGTCAACATAGTCTTCTCATTCGGATACATGATATAGACACTTTG
131 TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
* *
35340 GTTTCACAAGAAAGGCTTTTTCCCTCAAATTTTTGTAAAGTTTAAGTTCGTACCTCAAATAAGCC
196 GTTTCACAAGAAAGGCTTTTTCCCTCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGCC
* * * * *
35405 AAAGATGGATTCTAGTAATGATCTTCATTTATTTTGTAATTAAGCACTATAAGCACGTTCTCCTC
261 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTC
* * *
35470 ATTAGGATAAATGATATTGGTGATTTTCTTTTGCACGAAAATCTTTTCTTTACCCTATTTTCTTT
326 ATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCTTTACCCTATTTTCCTT
* ** * *
35535 AAAATCAATGTTCATCTTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCACCAATT-TTTTC
391 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC-ATTCTTTT-
*
35599 AAAGATTGGGAACCAAAAACAC
454 AAAGATTGGGAACCAAAAACAT
* * * * * * * * *
35621 ATTTCCTT-ATTAGGATACATGACATTAATGCTTTAGTGTCACAAAAAAAGCTTTTCTTTCTAAC
1 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
* * * * *
35685 GTTTTTGACAGATTCAAAGTTTGTCTCTTAAATAA-A-AAAACATGAATACTCATACTAATCCCC
66 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAA-ATGAATAGTCATACTAATCCCC
* * * * * * *
35748 ATTCTTTTCT-GGATTGGGTAGCATAAGCATAGTCTTCTCCTTAGGATACGCAATATTGATGCTT
130 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
** *
35812 TGGTTTTGCAAGAAAGGCTTTTT-TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATA
194 TGGTTTCACAAGAAAGGCTTTTTCCCTCA--AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATA
* *
35876 AACCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
257 AGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCT
* * * *
35941 CCTCATTAGGATAAAAGATATTGATGATTTTTTTTTGCATGGAAACCTTTTCTTTACCCTATTTT
322 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCTTTACCCTATTTT
* * * *** * **** * *
36006 CCTTGAAATCAAAGTT-AGTCCCCTAAAT-A-ACTATTTTC-CTTAAAATCATAGTTCCTCCCTT
387 CCTTAAAATCAAAGTTCA-TCCCTTAAATAAGACAAGCATCGATTCTCGTAATAG-T-CTCCATT
* *** * * *
36067 AAATAAGACAAGCATT--GATTCTTGTAATAATC-T
449 --CTTTTA-AAG-ATTGGGA-AC---CAA-AAACAT
** * ** * * *
36100 CCATTCTTTTCAAGATTGGGAACTAAAAACACATTCCCTTGATTAGGATAAATGACATTGATGCT
1 --ATTCCCTTC---ATTAGG-A-T------ACA-TGAC---ATT--G----ATG-CTTTG-GGGT
* * * * *** * *
36165 TTGGTGTCCTAAAAAAAGGTTTTCTTTCCATTGTTTTTGATAGAATCAACGTTTGTCTCTTAAAT
41 C----G--C-AAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTTTCTTAAAT
* * * ** * * *
36230 AAGACAAACATGAGTTGTCATACTAATCCCTTTTCATTTTAAGATTAGGCACCATAAACATAATC
99 AAGACAAAAATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
* * *
36295 TTCTCATAAGGATACACGATATTGATGCTTTGGTTT-AGCAAGAAAGGCTTTCTTCCCCCTAATT
164 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCA-CAAGAAAGGCTTT-TTCCCTCAAATT
* * * *
36359 TTTGTAAAGTCTAAGTTCATGCCTAAAATAAGCCAAACATGGATTCTAGTAATGATATTAATTCA
227 TTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGCCAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * * *
36424 TTTTATGATTAGGCACTATAAACACTTTCTCCTCAATAGGATAAATGATACTAATGATTTTCTTT
292 TTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * * *
36489 TGGCA-GGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCTAAGTTCATCCTTTAGATAAGACA
357 T-GCACGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * * * *
36553 AGCATCAATTCTCGTAATCGTCTCCATGCTTTTGAAGATTGGGATCCAAAAGCAC
421 AGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTGGGAACCAAAAACAT
* * *
36608 ATTCCCTTCATTAGGATACATGATATTGATGCTTTGGGGTCGTAAGAAATGCTTTTCTTTCCCCC
1 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
* * * *
36673 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATTAATACTTATACTAATCCCCA
66 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAAATGAATAGTCATACTAATCCCCA
* * * * **
36738 TT-GTTTTAGGATTAGGCACCGTAAACATAGTCTTCTCATTCGGATACAAGATATTGACACTTTG
131 TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
* * * * * * *
36802 GTTTCACTAGAAAGGTTTTTTCCCTCAAATTTTTATAAAGTCTATA-TTTGTGCCTAAAATGAGT
196 GTTTCACAAGAAAGGCTTTTTCCCTCAAATTTTTGTAAAGTCTA-AGTTCGTGCCTCAAATAAGC
* *
36866 CAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACTTTCTCCT
260 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCT
* * * *
36931 CATTAGGATAAATGATACTGATGATTTTATTTTGC-CTGAAATCTTTTCTTTGCCCTATTTTCCT
325 CATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCTTTACCCTATTTTCCT
* * * * * * *
36995 TAAAATCAAAGTTAATCCTTTAAATAAGACAAGCATTGATTCTCGCAACAATCTCCATTCTTTTC
390 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTA
37060 AAGATTGGGAACCAAAAACAT
455 AAGATTGGGAACCAAAAACAT
* * * *
37081 ATTTCCTTTATTAGGGTACATAACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
1 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
* * * *
37146 TTTTTTGAGAGAATCAAAGTTTGTTTCTTTAATAAGA-AAAACATGAATTGTCATACTAAT-CCC
66 ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAA-ATGAATAGTCATACTAATCCCC
37209 ATTCTTTT
130 ATTCTTTT
37217 GAAGATTGTC
Statistics
Matches: 2478, Mismatches: 459, Indels: 180
0.79 0.15 0.06
Matches are distributed among these distances:
472 15 0.01
473 225 0.09
474 226 0.09
475 692 0.28
476 490 0.20
477 16 0.01
478 390 0.16
479 8 0.00
480 7 0.00
481 5 0.00
483 2 0.00
484 4 0.00
485 8 0.00
486 1 0.00
487 1 0.00
489 1 0.00
491 3 0.00
493 3 0.00
494 3 0.00
495 3 0.00
497 3 0.00
501 1 0.00
502 1 0.00
503 8 0.00
504 3 0.00
505 1 0.00
506 7 0.00
507 3 0.00
508 2 0.00
510 3 0.00
511 6 0.00
512 54 0.02
513 254 0.10
514 15 0.01
515 8 0.00
516 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACC
ATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAAATGAATAGTCATACTAATCCCCA
TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
GTTTCACAAGAAAGGCTTTTTCCCTCAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGCC
AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTC
ATTAGGATAAATGATATTGATGATTTTCTTTTGCACGGAAATCTTTTCTTTACCCTATTTTCCTT
AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAA
AGATTGGGAACCAAAAACAT
Found at i:36052 original size:37 final size:37
Alignment explanation
Indices: 35999--36072 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
35989 TTTCTTTACC
* *
35999 CTATTTTCCTTGAAATCAAAGTTAGTCCCCTAAATAA
1 CTATTTTCCTTAAAATCAAAGTTACTCCCCTAAATAA
* * *
36036 CTATTTTCCTTAAAATCATAGTTCCTCCCTTAAATAA
1 CTATTTTCCTTAAAATCAAAGTTACTCCCCTAAATAA
36073 GACAAGCATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (37 bp):
CTATTTTCCTTAAAATCAAAGTTACTCCCCTAAATAA
Found at i:38417 original size:453 final size:454
Alignment explanation
Indices: 37557--38431 Score: 1201
Period size: 453 Copynumber: 1.9 Consensus size: 454
37547 GAGGAGGATA
* * * *
37557 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATCTTTGTCACATTTG
1 TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCAACCTTTGTCACATTTA
* * * * *
37622 ATGCACAAACTTAGACTTTTAAAAATTTGGTGGGATAAAAGCCTTTCTTGCGAATCCAAAGCATC
66 AGGCACAAACTTAGACTTTCAAAAATTAGGTGGGATAAAAGCCTTTCTTGCAAAACCAAAGCATC
* *
37687 AATATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGAGGATTA
131 AATATCATGTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGAGGATAA
* *
37752 GTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAACTGTGGAAAG
196 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCGATCAAAAACTGTGGAAAG
*
37817 AAAAGCATTTCTTGCGACCCCAAAGCATCAATGTCCTGTATCCGAATGAAGGGAATGTGTTTCTG
261 AAAAGCATTTCCTGCGACCCCAAAGCATCAATGTCCTGTATCCGAATGAAGGGAATGTGTTTCTG
* * * *
37882 GTTCCCAATCTCGAAAAAAATGGTGGCAGTTATGAGAATCGAGCCTTGTCTTTCGTAAGGGATAA
326 GTTCCCAATATCGAAAAAAATGGTGACAGTTACGAGAATCGAGCCTTGTCTTTCGTAAGGCATAA
* * *
37947 ACTTTTATTTTAAGGAAAATAGGGAAAAGAAAAAATGAAGATCATTACTAAATGATGGAGATTG
391 ACATTGATTTCAAGGAAAATAGGGAAAAGAAAAAATGAAGATCATTACTAAATGATGGAGATTG
*
38011 TGTTTATAGT-CCTAATCACAAAATAAATGAAGATCATTACTAGAATCAACCTTTAG-CTCATTT
1 TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCAACCTTT-GTCACATTT
** *
38074 AAGGCATGAACTTAGACTTTACAAAAATTAGG-GGGA-AGAAAGCCTTTCTTTCAAAACCAAAGC
65 AAGGCACAAACTTAGACTTT-CAAAAATTAGGTGGGATA-AAAGCCTTTCTTGCAAAACCAAAGC
* * *
38137 ATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAAAT-AGG
128 ATCAATATCATGTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCCTGAAAAG-AATGAGG
*
38201 ATAAGTATGACTATTCATGTTTGTCTTATTTAA-AGGACAAACTTTAATTCTATCAAAAA-TGGT
192 ATAAGTATGACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTAATTCGATCAAAAACT-GT
* * * * * * *
38264 GGAAAGAAAAGCGTTTCCTGCGACCTCAAAGTATTAATGTCCTTTATCCTAATGAAGGGGATGTG
255 GGAAAGAAAAGCATTTCCTGCGACCCCAAAGCATCAATGTCCTGTATCCGAATGAAGGGAATGTG
* * * * * ** *
38329 ATTT-TGGTTCTCAATATTGAAAAGAATTGTGACTGTTACGAGAATCGATTCTTGTCTTAT-TTA
320 -TTTCTGGTTCCCAATATCGAAAAAAATGGTGACAGTTACGAGAATCGAGCCTTGTCTT-TCGTA
* *
38392 AGGCATAGACATTGATTTCAAGGAAAATAGGGCAAAGAAA
383 AGGCATAAACATTGATTTCAAGGAAAATAGGGAAAAGAAA
38432 TGATTTCTAT
Statistics
Matches: 367, Mismatches: 46, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
452 3 0.01
453 337 0.92
454 27 0.07
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (454 bp):
TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCAACCTTTGTCACATTTA
AGGCACAAACTTAGACTTTCAAAAATTAGGTGGGATAAAAGCCTTTCTTGCAAAACCAAAGCATC
AATATCATGTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGAGGATAA
GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCGATCAAAAACTGTGGAAAG
AAAAGCATTTCCTGCGACCCCAAAGCATCAATGTCCTGTATCCGAATGAAGGGAATGTGTTTCTG
GTTCCCAATATCGAAAAAAATGGTGACAGTTACGAGAATCGAGCCTTGTCTTTCGTAAGGCATAA
ACATTGATTTCAAGGAAAATAGGGAAAAGAAAAAATGAAGATCATTACTAAATGATGGAGATTG
Found at i:38984 original size:415 final size:416
Alignment explanation
Indices: 38199--38989 Score: 963
Period size: 415 Copynumber: 1.9 Consensus size: 416
38189 AAAAGAAATA
38199 GGATAAGTATGACTATTCATGTTTGTCTTATTTAAAGGACAAACTTTAATTCTATCAAAAATGGT
1 GGATAAGTATGACTATTCATGTTTGTCTTATTTAAAGGACAAACTTTAATTCTATCAAAAATGGT
* * * * * *
38264 GGAAAGAAAAGCGTTTCCTGCGACCTCAAAGTATTAATGTCCTTTATCCTAATGAAGGGGATGTG
66 GCAAAGAAAAGCGTTTCCTGCGACCTCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTG
* * ** * *
38329 ATTTTGGTTCTCAATATTGAAAAGAATTGTGACTGTTACGAGAATCGATTCTTGTCTTATTTAAG
131 ATTTTGGTTCTCAATATTGAAAAGAATTGAGACAGAAACAAGAATCGATGCTTGTCTTATTTAAG
* ** * * **
38394 GCATAGACATTGATTTCAAGGAAAATAGGGCAAAGAAATGATTTCTATGTAAAGAAAATCATCAA
196 GCATAGACATTGATTTCAAAGAAAATAAAGCAAAGAAAAGATTTCCATCAAAAGAAAATCATCAA
* * * * * * * * *
38459 TATCTTTTATTCTAATGTGGAGAATATGTTTATAGTGCCTAATCATAGAATGAATGAAGATCATT
261 TATCATTTATCCTAATGAGAAGAATATATTTATACTGCCTAATCACAAAATGAATAAAGATCATT
* * * *
38524 ACTAGAGTCCTTGTTTCTCTAATTTGAGGCATGAACTTAGACTTTACAAAAGTTGGTAGGAAAAA
326 ACTAGAATCCATGTTTCTCTAATTTGAGACACGAACTTAGACTTTACAAAAGTTGGTAGGAAAAA
38589 TGCTTTCTTACGAAACCAAATACTAG
391 TGCTTTCTTACGAAACCAAATACTAG
* * * * * *
38615 GGATTAGTATGACTATTCATGTTTTTTTTATTT-AAGAGAGAAACTTTGATTTTATCAAAAA-GG
1 GGATAAGTATGACTATTCATGTTTGTCTTATTTAAAG-GACAAACTTTAATTCTATCAAAAATGG
* *
38678 TTGCAAAGAAAAGC-TTT-TTGCTACACT-AAAGCATTAATGTCATGTATCCTAATGAAAGGAAT
65 -TGCAAAGAAAAGCGTTTCCTGCGAC-CTCAAAGCATTAATGTCATGTATCCTAATGAAAGGAAT
* ** * * *
38740 GTGCTTTTGGTTC-CTGTCTTTGAAAA-ACTTGGAGACAGAAACAAGAATTGATGCTTGTCTTAT
128 GTGATTTTGGTTCTCAAT-ATTGAAAAGAATT-GAGACAGAAACAAGAATCGATGCTTGTCTTAT
* * *
38803 TTAAGGGATTA-ACTTTGATTTTAAAGAAAATAAAGCAATA-AAAAGATTTCCATACAAAAGAAA
191 TTAAGGCA-TAGACATTGATTTCAAAGAAAATAAAGCAA-AGAAAAGATTTCCAT-CAAAAGAAA
* *
38866 ATCATCAGTATCATTTATCCTAATGAGAAGAATGTATTTATACTGCCTAATCACAAAATGAATAA
253 ATCATCAATATCATTTATCCTAATGAGAAGAATATATTTATACTGCCTAATCACAAAATGAATAA
*
38931 AGATCATTACTAGAATCCATGTTT-TCCTCATTTGAGACACGAACTTAGACTTTACAAAA
318 AGATCATTACTAGAATCCATGTTTCT-CTAATTTGAGACACGAACTTAGACTTTACAAAA
38990 ATTAGGAGGA
Statistics
Matches: 314, Mismatches: 52, Indels: 19
0.82 0.14 0.05
Matches are distributed among these distances:
413 5 0.02
414 120 0.38
415 126 0.40
416 63 0.20
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (416 bp):
GGATAAGTATGACTATTCATGTTTGTCTTATTTAAAGGACAAACTTTAATTCTATCAAAAATGGT
GCAAAGAAAAGCGTTTCCTGCGACCTCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTG
ATTTTGGTTCTCAATATTGAAAAGAATTGAGACAGAAACAAGAATCGATGCTTGTCTTATTTAAG
GCATAGACATTGATTTCAAAGAAAATAAAGCAAAGAAAAGATTTCCATCAAAAGAAAATCATCAA
TATCATTTATCCTAATGAGAAGAATATATTTATACTGCCTAATCACAAAATGAATAAAGATCATT
ACTAGAATCCATGTTTCTCTAATTTGAGACACGAACTTAGACTTTACAAAAGTTGGTAGGAAAAA
TGCTTTCTTACGAAACCAAATACTAG
Found at i:39754 original size:13 final size:13
Alignment explanation
Indices: 39736--39793 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
39726 ACATCATGCT
39736 TTGTATCGATACA
1 TTGTATCGATACA
39749 TTGTATCGATACA
1 TTGTATCGATACA
39762 -TG--T---T-CA
1 TTGTATCGATACA
39768 TTGTATCGATACA
1 TTGTATCGATACA
*
39781 TTGTATCAATACA
1 TTGTATCGATACA
39794 AGTTCATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
6 2 0.05
7 3 0.08
9 1 0.03
10 1 0.03
12 3 0.08
13 27 0.73
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:39771 original size:19 final size:19
Alignment explanation
Indices: 39747--39834 Score: 71
Period size: 19 Copynumber: 4.9 Consensus size: 19
39737 TGTATCGATA
39747 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGTT
39766 CATTGTATCGAT--A----
1 CATTGTATCGATACATGTT
* *
39779 CATTGTATCAATACAAGTT
1 CATTGTATCGATACATGTT
* **
39798 CATTATATCGATACATGGA
1 CATTGTATCGATACATGTT
*
39817 CAAATGTATCGATACATG
1 C-ATTGTATCGATACATG
39835 AAACTGGCAG
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
13 11 0.20
15 1 0.02
17 1 0.02
19 27 0.50
20 14 0.26
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (19 bp):
CATTGTATCGATACATGTT
Found at i:39777 original size:32 final size:32
Alignment explanation
Indices: 39717--39813 Score: 131
Period size: 32 Copynumber: 3.0 Consensus size: 32
39707 CACACCCAGA
* * *
39717 TGTATCGATACATCATGCTTTGTATCGATACAT
1 TGTATCGATACAT-GTTCATTGTATCGATACAT
39750 TGTATCGATACATGTTCATTGTATCGATACAT
1 TGTATCGATACATGTTCATTGTATCGATACAT
* * *
39782 TGTATCAATACAAGTTCATTATATCGATACAT
1 TGTATCGATACATGTTCATTGTATCGATACAT
39814 GGACAAATGT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 45 0.78
33 13 0.22
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATGTTCATTGTATCGATACAT
Found at i:39900 original size:13 final size:13
Alignment explanation
Indices: 39879--39908 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
39869 CGATACATGG
*
39879 TACATTGTATCGA
1 TACAATGTATCGA
39892 TACAATGTATCGA
1 TACAATGTATCGA
39905 TACA
1 TACA
39909 TGATGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
TACAATGTATCGA
Found at i:39906 original size:33 final size:33
Alignment explanation
Indices: 39864--39928 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
39854 TACCACTGTT
*
39864 TGTATCGATACATGGT-ACATTGTATCGATACAA
1 TGTATCGATACATGATGA-ATTGTATCGATACAA
39897 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCGATACATGATGAATTGTATCGATACA
39929 TTATTTCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATGATGAATTGTATCGATACAA
Found at i:46254 original size:20 final size:21
Alignment explanation
Indices: 46218--46257 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46208 TTACAAATTT
*
46218 CTTCATTTTTACTTCAAAATA
1 CTTCATTTTTACATCAAAATA
46239 CTTCATTTTT-CATCAAAAT
1 CTTCATTTTTACATCAAAAT
46258 CACCAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (21 bp):
CTTCATTTTTACATCAAAATA
Found at i:48623 original size:33 final size:33
Alignment explanation
Indices: 48581--48657 Score: 145
Period size: 33 Copynumber: 2.3 Consensus size: 33
48571 CACCCAGATG
48581 TATCGATACATCATGCTTTGTATCAATACATTA
1 TATCGATACATCATGCTTTGTATCAATACATTA
*
48614 TATCGATACATCATGCTTTGTATCAATACATTG
1 TATCGATACATCATGCTTTGTATCAATACATTA
48647 TATCGATACAT
1 TATCGATACAT
48658 GTTCATTGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.39
Consensus pattern (33 bp):
TATCGATACATCATGCTTTGTATCAATACATTA
Found at i:48687 original size:20 final size:19
Alignment explanation
Indices: 48641--48697 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
48631 TTGTATCAAT
*
48641 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
48660 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
48679 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
48698 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:48786 original size:33 final size:33
Alignment explanation
Indices: 48727--48789 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
48717 TACCACTGTC
*
48727 TGTATCGATACATGGTACATTATATCGATATAG
1 TGTATCGATACATGATACATTATATCGATATAG
*
48760 TGTATCGATACATGATGA-ATTGTATCGATA
1 TGTATCGATACATGAT-ACATTATATCGATA
48790 CATTGCTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (33 bp):
TGTATCGATACATGATACATTATATCGATATAG
Found at i:51634 original size:28 final size:28
Alignment explanation
Indices: 51584--51637 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
51574 TACAAGCCAA
* *
51584 TGTATCGATACAATTTTTTGTGTATCAT
1 TGTATCGATACAATCTTTGGTGTATCAT
51612 TGTATCGATAC-ATACTTTGGTGTATC
1 TGTATCGATACAAT-CTTTGGTGTATC
51638 GATACAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.24, C:0.13, G:0.17, T:0.46
Consensus pattern (28 bp):
TGTATCGATACAATCTTTGGTGTATCAT
Found at i:53750 original size:21 final size:20
Alignment explanation
Indices: 53721--53763 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
53711 GGCTAGTGTG
*
53721 GGGAATGCCCGGTTGCGACCT
1 GGGAATG-CCGGTCGCGACCT
*
53742 GGGAGTGCCGGTCGCGACCT
1 GGGAATGCCGGTCGCGACCT
53762 GG
1 GG
53764 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.12, C:0.28, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGAATGCCGGTCGCGACCT
Found at i:54226 original size:13 final size:13
Alignment explanation
Indices: 54205--54243 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
54195 ATAATCCCCC
* *
54205 TGTACCGATACAG
1 TGTATCGATACAA
54218 TGTATCGATACAA
1 TGTATCGATACAA
54231 TGTATCGATACAA
1 TGTATCGATACAA
54244 AGAAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:58206 original size:33 final size:33
Alignment explanation
Indices: 58162--58226 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
58152 TACAAGCCAA
* *
58162 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
*
58195 TGTATCTATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
58227 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:61089 original size:476 final size:474
Alignment explanation
Indices: 59105--62536 Score: 3665
Period size: 476 Copynumber: 7.3 Consensus size: 474
59095 GTTTTATTTA
* *** * * **
59105 AGGGCGAAGAAAAGATTTTTGTGCAAAAGGAAATAAAAAATATCATTTATCCTAATGAGGAGAAT
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* * * **
59170 GGGTTTATAGTGCCTAATCATAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTTTCATTT
66 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTT
* * * * *
59235 GCGACACGAACTTAGACTTTACAAAAATTAG-GGAGAAGAAAGCCTTTCTTTCGAAACCAAAGCA
131 GAGGCACGAACTTAGACTTTACAAAAATTTGTGG-GAAAAAAGCCTTTCTGT-GAAACCAAAGCA
* * * * * * * * *
59299 TCAATATCGTGTATCCTTATGTGAAGACTACGTTTTTGGGGCCTAATCTTGAAATGAATGTGGAT
194 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * * *
59364 TAGTACG-GCTATTAATGTTTGCCTTATTTAAGAGCCAAACTTTTATTCTATC-GAAAATTATGA
259 TAGTATGAG-TATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAATT-GGA
* * * * * * * * *
59427 AATGAAAAGAATTTT-TTGTGACCCTG-AAGCACCAATGTCTTATCTCCTAATGAAGGGAATCTG
322 AAT-AAAAG-CTTTTCTTG-CAACATGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * * *
59490 GTTTTGGTTCCCTATCTTGAAAAAAATGGAGACTGTTTCGAGAATCAATGCTTATCTTATTTAAG
384 TTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAG
59555 GGATGAACTTTGATTTTAAGGAAAAT
449 GGATGAACTTTGATTTTAAGGAAAAT
* * * * * * * * *
59581 TGGACAAAGAAAAGATTTTCATGTAAAAGGAAATTATCATTATCATTCATCCTAATGAGGAGAAG
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* *
59646 GTGTTTATTGTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTT
66 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTT
* * * *** * *
59711 GAGACACGAATTTAGACATTACAAAAATTAAAGGGAAGAAAGCCTTTCTTTCGAAACCAAAGCAT
131 GAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTGT-GAAACCAAAGCAT
* * * * * * *
59776 CAATATCGTGTATCCTTATGAGAAGACTACGTTTTTAGG-GCCTAATCTTGAAATGAATGTGG--
195 CAATATCATGTATCCTAATGAGAAGACTATGTTTAT-GGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * * *
59838 TAGTATG-GCTATTAATATTTGCCTTATTTGAGAGACAAACTTTTATTCTATC-GAAAACTGTGA
259 TAGTATGAG-TATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAATTG-GA
* ** * * * * * * * *
59901 AATGAAAGAATTTCTTGCGACCTTAAAGCACCAATGTCCTGTCTCCTAATGAAGGGAATCTGGTT
322 AATAAAAGCTTTTCTTGCAACATGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * * * *
59966 TTGGTTCCCTATCTTGAAAACAATGGAGATTGTTCCGAGAATCGATGCTTATCTTATTTAAGGGA
387 TTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGA
*
60031 TGAACTTTGATTTCAAGGAAAAT
452 TGAACTTTGATTTTAAGGAAAAT
* * * * * *
60054 AGGGTAAAGAAAACATTTCAATGCAAAAGGAAATTATCATTATCATTTATCCTAATGAGGAGAAT
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* * * * * *
60119 GTGTTTATCGTGCCTAATCAGAAAATGAATAAAGATCATTACTATAATCTACGTTTGGCAT-ATT
66 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGC-TCATT
** * * * *
60183 TTTGGCACGAACTTAAACTTTACAAAAATTTGTGGGAAAAAAGCTTTTCTTTCGAAACCAAAGCT
130 TGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTGT-GAAACCAAAGCA
* * * * *** * * *
60248 TCAATATCGTGTCTCCTTATGAGAAGAATACACTTACGGTGCCTAATCCTGAAATGAATGAGGAT
194 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * **
60313 TAATATGACTATTAATGTTTGTGTTATTTAAAAGACAAACTTTTATTCTATC-AAAAACTGCGGT
259 TAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAATTG-GAA
*** * * * * * * * * *
60377 ATAAAAAAATTTCTTGCGACCCT-AAGGCACCAAAGCCTTGTCTCCTAATGAAGGGAATCTGTTT
323 ATAAAAGCTTTTCTTGC-AACATGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * * *
60441 TTGGTTCCTAATCTTGAAAAGAAT-GAAGA-TAGTTTCGAGAATCGATACTTATCTTATTTAACG
387 TTGGTTCCCAATCTTGAAAAGAATAG-AGACT-GTTACGAGAATCGATGCTTATCTTATTTAAGG
*
60504 GATGAACTTTGATTTCAAGGAAAAT
450 GATGAACTTTGATTTTAAGGAAAAT
* * * * *
60529 AGGGCAAAAAAAAGATTTCCATGCAAAAGGAAATTATCATTACCATTTATCCTAATGAGGAGAAT
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* * * * **
60594 GTATTTATCA-TGACTAATCAGAAAATGAAT-ATAGATCATTACTAGAATCTATGTTTGGAACAT
66 GTGTTTAT-AGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCCATGTTTGGCTCAT
* * * *
60657 TTGTGGCATGAACTTAGACTTTACAAAAATTTATGGGAAAAAAGCCTTTATAGTGAAACCAAAGC
129 TTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCT-GTGAAACCAAAGC
* * * * * *
60722 ATCAATATCATGTATTCTAACGAGAAGACTATGTTTATGATGTCTTATCTTGAAAAGAATGGGGA
193 ATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* *
60787 TTAGTATGAGTATTAATGTTTATCTTATTTAAAAGATAAA-TGTTGATTCTATCAAAAAAGTTGG
258 TTAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACT-TTGATTCTATCAAAAAA-TTGG
* * * *
60851 AAATAAAAGCTTTTCTTGCAATATGAAAGCATCAATATCGTGTATCCTAACGAAGGGAATGTGTT
321 AAATAAAAGCTTTTCTTGCAACATGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * *
60916 TTTGGTTCCCAATCTCGAAAAGAATAGAGACTGTAACGAGAATCGATGCTTGTCTTATTTAAGGG
386 TTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGG
*
60981 ATGAACTTAGATTTTAAGGAAAAT
451 ATGAACTTTGATTTTAAGGAAAAT
* *
61005 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTGCCAATATGATTTATCCTAATGAGGAGAAT
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
61070 ATGTTTATAGCGCCTAATCACAAAATAAATGAAGATCATTGCTAGAATCCATGTTTGGCTGATTT
66 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTT
* * * *
61135 GAGGCATGAGCTTAGACTTTACAAAAATTTGTGGGAAAAAA-CCTTTCTAGTTAAACCAAAGAAT
131 GAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCT-GTGAAACCAAAGCAT
* * * * *
61199 CAATATCATGTATTCTAATGAGAAGACTATGTTTACGGTGCCTTATCAT-AAAGATGAATAGGGA
195 CAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-A-GAATGGGGA
* *
61263 TTAGTATGAGTATTAATGTTTGTCTTATTTATAAGATAAACTTTGATTCTATCAAAAAAGTTGGA
258 TTAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAA-TTGGA
* * * * * *
61328 AAGAAAAACTTTTCCTGCGACACTG-AAGCATCAATGTCATGTATCCTAACGAAGGGAACGTGTT
322 AATAAAAGCTTTTCTTGCAACA-TGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * * *
61392 TTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACAAGAATCAATGCTTGTCTTATTTAGGGG
386 TTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGG
61457 ATGAACTTTGATTTTAAGGAAAAT
451 ATGAACTTTGATTTTAAGGAAAAT
* * *
61481 AGGGCGAAGAAAAGATTTCCATGCCAAAGAAAATTGCCAATATCATTTATCCTAATGAGGAGAAT
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* *
61546 GTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCGTTACTAGAATCCATGTTTGGCTCATTT
66 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTT
* * * *
61611 GAGGCACGAGCTTAGACTTTACAAAAATTTGTGGGAAAAAA-CCTTTTTACTAAAACCAAAGCAT
131 GAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCT-GTGAAACCAAAGCAT
* * * * * *
61675 CGATATCATGTATTCGAATGAGAAGACTATGTTTACGGTGCCTTATCCTAAAAAGAATGGGGATT
195 CAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
61740 AGTATGTGTATTAATGTTTATCTTATTTAAAAGATAAACTTTGATTCTATCAAAAAAGTTGGAAA
260 AGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAA-TTGGAAA
* ** * * *
61805 GAAAAGCTTTTCTTG-AGACACCAAAGCATCAATGTCGTGTATCCCAACGAAGGGAATGTGTTTT
324 TAAAAGCTTTTCTTGCA-ACATGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * *
61869 TGGTTCCCAATCTTGAAAAAAATAGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGAT
388 TGGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGAT
* *
61934 AAACTTTGATTTTAAGAAAAAT
453 GAACTTTGATTTTAAGGAAAAT
* * *
61956 AGGGCAAAGAAAAGATTTCCATGC-AAA-AAAATTGCCAATATCATTTATTCTAATGAGGAAAAT
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
62019 GTGTTTATAGTGCTTAATTACAAAATAAATGAAGAACGTTACTAGAATCCATGTTTGGCTCATTT
66 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTT
* * * *
62084 GAGGCATGAACTTAGACTTCACAAAAATTGGTTGGAAAAAAGCCTTTCT-TGAGAATCCAAAGCA
131 GAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTGTGA-AA-CCAAAGCA
* * *
62148 TCAATATAATGTATCCTAATGAGAAGAC--TGTTTATGGTGCCTAATCCTAAAAACAATGGGG--
194 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
62209 -A-T-T-A-T-TT-ATGTTTGTCTTACTTAAGAGACAAACTTTGATTTTATCAAAAACTTTGCAA
259 TAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAA-ATTGGAA
* * * **
62267 AAAAAATC-TTT-TTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTG-TTT
323 ATAAAAGCTTTTCTTGCAACATGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * ** * * * *
62328 AGGTTCACTATCTTTGAAAAGCTTGGAGACTGCTACGAGAATTGATGCTCATCTTATTTAAGGGA
388 TGGTTCCCAATC-TTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGA
* *
62393 T-AAGCTTTGGTTTTTAGGAAAAT
452 TGAA-CTTTGATTTTAAGGAAAAT
* * ** * ** * *
62416 AGGGCAAAGAAAAGATTTTCGTATAATAGAAAATTAAAAATATCATTTATTCTAACGAGGAGAAT
1 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
* * *
62481 G-GGTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATACATGTTTG
66 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
62537 TCTAATTTAA
Statistics
Matches: 2593, Mismatches: 322, Indels: 97
0.86 0.11 0.03
Matches are distributed among these distances:
459 14 0.01
460 88 0.03
461 82 0.03
462 36 0.01
463 49 0.02
464 2 0.00
465 1 0.00
467 1 0.00
468 1 0.00
469 1 0.00
472 41 0.02
473 478 0.18
474 108 0.04
475 739 0.28
476 937 0.36
477 15 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTACCAATATCATTTATCCTAATGAGGAGAAT
GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCTCATTT
GAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTGTGAAACCAAAGCATC
AATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
GTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAATTGGAAATA
AAAGCTTTTCTTGCAACATGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
TTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGATGAA
CTTTGATTTTAAGGAAAAT
Found at i:64191 original size:7 final size:7
Alignment explanation
Indices: 64179--64216 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
64169 TCTTTTTTTA
64179 AAAAAAC
1 AAAAAAC
64186 AAAAAAC
1 AAAAAAC
*
64193 -AAAAAT
1 AAAAAAC
*
64199 AAAAAAT
1 AAAAAAC
64206 AAAAAAC
1 AAAAAAC
64213 AAAA
1 AAAA
64217 CAAAGAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.05
Consensus pattern (7 bp):
AAAAAAC
Found at i:64202 original size:13 final size:12
Alignment explanation
Indices: 64180--64242 Score: 54
Period size: 13 Copynumber: 4.9 Consensus size: 12
64170 CTTTTTTTAA
64180 AAAAACAAAAAAC
1 AAAAA-AAAAAAC
*
64193 AAAAATAAAAAAT
1 AAAAA-AAAAAAC
*
64206 AAAAAACAAAAC
1 AAAAAAAAAAAC
* *
64218 AAAGAAAAAAAG
1 AAAAAAAAAAAC
64230 AAAGAAAAGAAAA
1 AAA-AAAA-AAAA
64243 GAACCTACTT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
12 17 0.43
13 19 0.47
14 4 0.10
ACGTcount: A:0.84, C:0.06, G:0.06, T:0.03
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:64204 original size:20 final size:20
Alignment explanation
Indices: 64179--64216 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
64169 TCTTTTTTTA
64179 AAAAAACAAAAAACAAAAAT
1 AAAAAACAAAAAACAAAAAT
*
64199 AAAAAATAAAAAACAAAA
1 AAAAAACAAAAAACAAAA
64217 CAAAGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.05
Consensus pattern (20 bp):
AAAAAACAAAAAACAAAAAT
Found at i:64228 original size:12 final size:12
Alignment explanation
Indices: 64186--64237 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
64176 TTAAAAAAAC
*
64186 AAAAAACAAAAA
1 AAAAAACAAAGA
*
64198 TAAAAAATAAA-A
1 -AAAAAACAAAGA
64210 AACAAAACAAAGA
1 AA-AAAACAAAGA
*
64223 AAAAAAGAAAGA
1 AAAAAACAAAGA
64235 AAA
1 AAA
64238 GAAAAGAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 2 0.06
12 20 0.59
13 12 0.35
ACGTcount: A:0.85, C:0.06, G:0.06, T:0.04
Consensus pattern (12 bp):
AAAAAACAAAGA
Found at i:65323 original size:62 final size:62
Alignment explanation
Indices: 65209--65987 Score: 889
Period size: 62 Copynumber: 12.6 Consensus size: 62
65199 TCTCCTTTCA
* * *
65209 CCTTCAGTCCTCAAAGAACAGGAC-ACTTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * ** *
65270 CCTTGAGTCCTTAAAGAGCATGATGCCTTTTTCTTTTCAAAGCTGACATAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * ** * * *
65332 CCTTTAGTCCTCAAAGAGTAGGATG-CTTTTTCCTTT-AAAGCCCACATGAGCTGATGGTAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* ** * *
65392 CTTTTTAGTCCTCAAAGAGCAGGATACC-TTTTCCTTTCGAAGCCCACACAAGTTGGTGGCAC
1 C-CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* * ** * * *
65454 CTTTCTAGTCCTCAAAAAATAGGACACCTTTTTCTTTTTAAAGCCCACACAAGTTGTTGGCA-
1 CCTT-TAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* * **
65516 CCTCTTAGTCCTCAAAGAGCAGGACGCCTTTTTCATTTCAAAGCCCACAGAAGCCGGTGGCAC
1 CCT-TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* *
65579 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-GAAGCCCACACAAGTTGGTGGCA-
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
** * *
65639 CCTTTCAAGTCCTCAAAGAGCATAACACCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA-
1 CCTTT--AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* * *
65702 CCTCTTAGTTCTCAAAGAGCAGGATGCCTTATTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
1 CCT-TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* *
65765 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCGAAGCTCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * * * *
65827 CTTTCTAGTCCCCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCACATACAAGTTGGTGGCAT
1 CCTT-TAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* *
65890 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCGAAGCCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
* *
65952 CTTTCTAGTCCTCAAA-AGCAGGATG-CTTTTT-TTTTC
1 CCTT-TAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC
65988 TTTTTTCCTT
Statistics
Matches: 614, Mismatches: 88, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
60 29 0.05
61 92 0.15
62 365 0.59
63 126 0.21
64 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (62 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
Found at i:65576 original size:125 final size:125
Alignment explanation
Indices: 65207--65986 Score: 892
Period size: 125 Copynumber: 6.3 Consensus size: 125
65197 TTTCTCCTTT
* * *
65207 CACC-TTC-AGTCCTCAAAGAACAGGAC-ACTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * ** *
65269 CC-CTTGAGTCCTTAAAGAGCATGATGCCTTTTTCTTTTCAAAGCTGACATAAGTTGGTGG
66 CCTCTT-AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* * * * ** * * *
65329 CACCCTT-TAGTCCTCAAAGAGTAGGATG-CTTTTTC-CTTTAAAGCCCACATGAGCTGATGGTA
1 CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* ** * *
65391 CCTTTTTAGTCCTCAAAGAGCAGGATACC-TTTTCCTTTCGAAGCCCACACAAGTTGGTGG
66 CC-TCTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* ** * *
65451 CACCTTTCTAGTCCTCAAAAAATAGGACACCTTTTTCTTTTTAAAGCCCACACAAGTTGTTGGCA
1 CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * **
65516 CCTCTTAGTCCTCAAAGAGCAGGACGCCTTTTTCATTTCAAAGCCCACAGAAGCCGGTGG
66 CCTCTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* * *
65576 CACCCTT-TAGTCCTCAAAGAGCAGGACGCC-TTTTCCTTTTGAAGCCCACACAAGTTGGTGGCA
1 CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
** * *
65639 CCT-TTCAAGTCCTCAAAGAGCATAACACCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGG
66 CCTCTT--AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* * * * *
65700 CACCTCT-TAGTTCTCAAAGAGCAGGATGCCTTATTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* *
65764 CC-CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCGAAGCTCACACAAGTTGGTGG
66 CCTC-TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* * * * * *
65824 CACCTTTCTAGTCCCCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCACATACAAGTTGGTGGCA
1 CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* *
65889 TCCT-TTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCGAAGCCCACACAAGTTGGTGG
66 -CCTCTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
*
65949 CACCTTTCTAGTCCTCAAA-AGCAGGATG-CTTTTT-TTTT
1 CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTT
65987 CTTTTTTCCT
Statistics
Matches: 563, Mismatches: 78, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
122 65 0.12
123 100 0.18
124 185 0.33
125 209 0.37
126 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (125 bp):
CACCTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
CCTCTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
Found at i:66123 original size:41 final size:40
Alignment explanation
Indices: 65984--66174 Score: 127
Period size: 42 Copynumber: 4.5 Consensus size: 40
65974 ATGCTTTTTT
* *
65984 TTTCTTTTTTCCTTTGTCCTCAAAGAGCAAGATGCAC-TTCA
1 TTTCTTTTTTCCTTTGTCCTTAAAGAGCAAGA--CACATTTA
* * *
66025 TTTCCTTATTTTCCCTTCTATTTCTTAAAGAGCAGGATGCA-ATTTA
1 TTT-CTT-TTTT-CCTT-T-GTCCTTAAAGAGCAAGA--CACATTTA
* * *
66071 TTCTCCTTTTTCCTTTGTCCTTAAAAAGCAGGACACATTTAA
1 TT-TCTTTTTTCCTTTGTCCTTAAAGAGCAAGACACATTT-A
* * **
66113 TTTCTTTTTTCCTTTGT-CTTCAATGGGCAAGATGCATTTTA
1 TTTCTTTTTTCCTTTGTCCTT-AAAGAGCAAGACACA-TTTA
66154 TTTCCTTTTTTCCTTTGTCCT
1 TTT-CTTTTTTCCTTTGTCCT
66175 CATGGAGCAT
Statistics
Matches: 121, Mismatches: 16, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
40 5 0.04
41 34 0.28
42 37 0.31
43 7 0.06
44 8 0.07
45 5 0.04
46 24 0.20
47 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.11, T:0.47
Consensus pattern (40 bp):
TTTCTTTTTTCCTTTGTCCTTAAAGAGCAAGACACATTTA
Found at i:66172 original size:42 final size:42
Alignment explanation
Indices: 65963--66224 Score: 180
Period size: 41 Copynumber: 6.2 Consensus size: 42
65953 TTTCTAGTCC
* * * *
65963 TCAAA-AGCAGGATGC-TTTTTTTTTCTTTTTTCCTTTGTCC
1 TCAAAGAGCAAGATGCATTTTATTTCCTTTTTTCCTTTGTCT
* * *
66003 TCAAAGAGCAAGATGCACTTCATTTCCTTATTTTCCCTTCTAT-T
1 TCAAAGAGCAAGATGCATTTTATTTCCTT-TTTT-CCTT-TGTCT
* *
66047 TCTTAAAGAGCAGGATGCAATTTATTCTCC-TTTTTCCTTTGTCCT
1 TC--AAAGAGCAAGATGCATTTTATT-TCCTTTTTTCCTTTGT-CT
* * ** *
66092 T-AAAAAGCAGGACACATTTAATTT-CTTTTTTCCTTTGTCT
1 TCAAAGAGCAAGATGCATTTTATTTCCTTTTTTCCTTTGTCT
* * *
66132 TCAATGGGCAAGATGCATTTTATTTCCTTTTTTCCTTTGTCC
1 TCAAAGAGCAAGATGCATTTTATTTCCTTTTTTCCTTTGTCT
** * * * *
66174 TCATGGAGCATA-ATCCCTTTCA-TTCTTTTTTTCCTTTGTCT
1 TCAAAGAGCA-AGATGCATTTTATTTCCTTTTTTCCTTTGTCT
*
66215 TTAAAGAGCA
1 TCAAAGAGCA
66225 GGGCGCCCCC
Statistics
Matches: 173, Mismatches: 35, Indels: 27
0.74 0.15 0.11
Matches are distributed among these distances:
40 9 0.05
41 62 0.36
42 54 0.31
43 7 0.04
44 10 0.06
45 8 0.05
46 20 0.12
47 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (42 bp):
TCAAAGAGCAAGATGCATTTTATTTCCTTTTTTCCTTTGTCT
Found at i:69195 original size:50 final size:50
Alignment explanation
Indices: 69136--69259 Score: 153
Period size: 50 Copynumber: 2.5 Consensus size: 50
69126 ATTTTTAGAT
* *
69136 TTTTCATCTCGGGGATACTCTAACCCC-AGCTTTATTTCTAAAATATTGAA
1 TTTTCATCTCGGGGATACTCCAACCCCGA-CTTTATTTCCAAAATATTGAA
* *
69186 TTTTCATCTCGGGGATACTCCAACCCCGATTTTATTTCCAAAATA-TCAA
1 TTTTCATCTCGGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGAA
* *
69235 TTTTTCATAATCGGAGATACTCCAA
1 -TTTTCAT-CTCGGGGATACTCCAA
69260 TCCTGTTATG
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
49 3 0.05
50 47 0.72
51 15 0.23
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.36
Consensus pattern (50 bp):
TTTTCATCTCGGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGAA
Found at i:69436 original size:79 final size:78
Alignment explanation
Indices: 69198--69502 Score: 290
Period size: 79 Copynumber: 3.9 Consensus size: 78
69188 TTCATCTCGG
* * * * * * *
69198 GGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCATAATCGGAGATACTCCAATCC
1 GGATACTCCAACCCCGATCTTATTTCTAGAACATCGATTTTTCACAATCGG-GATACTCCAACCC
* * * *
69263 TGTTATGTTCGAGG
65 CGTTATTTTTGAGA
* * * * * * * * *
69277 GGATACTCCAA-CCCTAACTTTATTTTTAAAATATTGATTTCTCACAATGGGGACACTCCAACCC
1 GGATACTCCAACCCCGATC-TTATTTCTAGAACATCGATTTTTCACAATCGGGATACTCCAACCC
*
69341 CGTTATTTTTGCGA
65 CGTTATTTTTGAGA
* * *
69355 GGATACTTCAACCCCGGTCTTGTTTCTA-AAGCATCGATTTTTCACAATCGTGGATACTCCAACC
1 GGATACTCCAACCCCGATCTTATTTCTAGAA-CATCGATTTTTCACAATCG-GGATACTCCAACC
*
69419 CTGTTATTTTTGAGA
64 CCGTTATTTTTGAGA
* * * *
69434 GGATACTCCAACCCCGATTTTATTTCTAGAACATTGATTTTCCATAATCGGAGATACTCCAACCC
1 GGATACTCCAACCCCGATCTTATTTCTAGAACATCGATTTTTCACAATCGG-GATACTCCAACCC
69499 CGTT
65 CGTT
69503 GTTATCCTCA
Statistics
Matches: 182, Mismatches: 38, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
77 2 0.01
78 57 0.31
79 121 0.66
80 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (78 bp):
GGATACTCCAACCCCGATCTTATTTCTAGAACATCGATTTTTCACAATCGGGATACTCCAACCCC
GTTATTTTTGAGA
Found at i:71339 original size:13 final size:13
Alignment explanation
Indices: 71321--71345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71311 ATGTTGCACA
71321 GTATCGATACATT
1 GTATCGATACATT
71334 GTATCGATACAT
1 GTATCGATACAT
71346 GTTGCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:73405 original size:475 final size:474
Alignment explanation
Indices: 72708--76347 Score: 3987
Period size: 475 Copynumber: 7.7 Consensus size: 474
72698 AAGAAAAGCT
* * * * * * *
72708 TTTTTGATGGAATCAAAGTTTGTCTCATCAATAAGGCAAACATGAATACTTATCCTAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCCAT
* * * * * * *
72773 TATTTTTAGAATTAGGCACCATAAACAAAGTCCTCTTATTTGGATACATGATATTCATGCTTTGG
66 T-CTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGG
* * * *
72838 TTTCACCAGAAAGGCTTTTTTCCCACC-AATTTTTATAAAGTCTAGGTTCGTGCCTCAAATGAGA
130 TTTCACAAGAAAGGC-TTTTTCCC-CCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGA
* * * * * *
72902 TAAACATGGATTCTTGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAATACATTCTCTT
193 CAAATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCT
72967 CATTAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
258 CATTAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * *
73032 TAAAATCAATGTTCATTACTTAAATAAGGCGAGGATCTATTCTCGTAATAGTCTCCAATCTTTTC
323 TAAAATCAATGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCAATCTTTTC
* * * *
73097 AAGATTGGGAACTAAAAACACATTCTTTTTATTAGGATAAATGACATTGATGCTTTGGGGTCGTA
388 AAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAATGACATTGATGCTTTGGGGTCGCA
*
73162 AGAAATGCTTTT-TTTTCACCA
453 AGAAATGCTTTTCTTTTCAACA
* * * *
73183 TTTTTGATAGAATCTAAGTTGGTCTCCTAAATAAGACAAACGTGAATACTCATACAAATTCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCCAT
* * * *
73248 TCTTCTTAGGGTTAGGCACCACAAGCATAGTCTTCTCATTAGGATATATGATATTGATGCTTTGG
66 TCTT-TTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGG
* * * * * * *
73313 ATTCGCAAGAAAGGGCATTTTCCCAAC-AAGTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGA
130 TTTCACAAGAAA-GGCTTTTTCCC-CCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGA
* * * * *
73377 GAAATAAGGATTTTAGTAATGTTCTTCATTCA-TTTATGATTAGGCATTAT-AATCACATTCTCC
193 CAAATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAT-ACATTCTCC
* * * * * *
73440 TTATTAGGATAAATGATACTTATGATTTTCTTTTCCATAAAAATCTTTTCTTTGCCCTATTTTCC
257 TCATTAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* * *
73505 TTAAAATCAAAGTTCA-TCCTTTAAAAAAGACAAGCATCGATTCTCGTAATAGTCTCCAAGCTTT
322 TTAAAATCAATGTTCATTCC-TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCAATCTTT
* ** * * *
73569 TCAAAGATTGTGAACCAAAAACACATT-TCCTTCATTAGGATGCATCACATTAATGCTTTGGTGT
386 TC-AAGATTGGGAACCAAAAACACATTCT-CTTCATTAGGATAAATGACATTGATGCTTTGGGGT
* * * ** **
73633 CACTAGAAAAGCTTTTCTTGGCAATG
449 CGCAAGAAATGCTTTTCTTTTCAACA
* *
73659 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCGTACTAA--CCGCA
1 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCC-C-
* * * *
73722 ATTCTTTTCAGGATAAGGCACCATAAACATAG-CTTTCTCATAAGGATACACGATATTGATGCTC
64 ATTCTTTT-AGGATTAGGCACCATAAACATAGTC-TTCTCATTAGGATACATGATATTGATGCTT
* * *
73786 TGGTTTCGA-AAGAAAGTCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAGTTCATACCTCAAATT
127 TGGTTTC-ACAAGAAAGGCTTT-TTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATG
* * * *
73850 AGCCAAACGT-A-GATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACAATAAACACATT
190 AGACAAA--TAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATT
* * * * *
73913 CTCCTTATTAGGATAAAAGA-CATAGATGAATTTCTTTTGCATGGAAATCATTTCTTTGCCCTAT
253 CTCCTCATTAGGATAAAAGATAAT-GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * * * *
73977 TTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATTGATTCTCATAACTA-TCTCCAA
317 TTTCCTTAAAATCAATGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAA-TAGTCTCCAA
* * * ** * *
74041 GCTTTTCCTATATTATGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
381 TCTTTT-CAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAATGACATTGATGCTTTG
* * * * *
74106 GTGTCACAAGAAAAGCTTTTCTTTCCAACT
445 GGGTCGCAAGAAATGCTTTTCTTTTCAACA
* * *
74136 TTTTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATACTCATACTAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCCAT
* * * * **
74201 TCCTTTTAGGATTACGCATCATAAACATAGTCCTCTCATTCGGATACATGATATCCATGCTTTGG
66 T-CTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGG
* * * *
74266 TTTCACAAGAAAGGGTTTATTCCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAT
130 TTTCACAAGAAAGGCTTT-TTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGAC
* * * * * *
74330 AAACATA-GATTCTACTAATGATATTTATTCTTTTTGTGATTAGGCACTATATATACATTCTCCT
194 AAATA-AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCT
* * *
74394 TATTAGGATAAAAGATATTGAT-ATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCT
258 CATTAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* *
74458 TAAAATCAATGTTCA-TCGCTTAAATAAGACAAGGATCGATTCTCGTAATAGTCTCTAATCTTTT
323 TAAAATCAATGTTCATTC-CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCAATCTTTT
* * * * *
74522 CAAGATTGGGAACTAAAAACACTTTCTTTTCATTAGGATAAATGACGTTGATGCTTTAGGGTCGC
387 CAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAATGACATTGATGCTTTGGGGTCGC
* *
74587 AAGAAATGCTTTTCTTTTCACCG
452 AAGAAATGCTTTTCTTTTCAACA
* * ** * *
74610 CTTTTGATAGAATCAAAGTTTGTCTCCTAAATCAGACAAACGCGAATACTCATACAAATTTCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCCAT
* * * *
74675 TCTTTTTAGGGTTAGACACCACAAACATAG-CATTCTCATTAGGATACATGATATTGGTGCTTT-
66 TC-TTTTAGGATTAGGCACCATAAACATAGTC-TTCTCATTAGGATACATGATATTGATGCTTTG
*
74738 GTATTCACAAGAAAGGCCTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAG
129 GT-TTCACAAGAAAGG-CTTTTTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAG
* * * * *
74803 ACAAATAAGTATTCTAGTAACGATCTTCATTCGTTTTGTGATTGGGTACTAT-AATCACATTCTC
192 ACAAATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAT-ACATTCTC
* * *
74867 CTCATTAGGATAAAAGATATTAAT-ATTTT-TTTTACATGAAAATCTTTTCTTTGCCCTATTTTC
256 CTCATTAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * *
74930 CTTAAAATCAATGTTC-TTCTCTTAAATAAGACAAACATGGATTCTCGTAATAGTCTCCAAGCTT
321 CTTAAAATCAATGTTCATTC-CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCAATC-T
* * ** * * *
74994 TTTAAAGATTGTGAACCAAAAACACATT-TCCTTCATTAGGATGCATCACATTAATGCTTTGGTG
384 TTTCAAGATTGGGAACCAAAAACACATTCT-CTTCATTAGGATAAATGACATTGATGCTTTGGGG
* * * **
75058 TCGCTAGAAAAGCATTTCTTTGT-AATG
448 TCGCAAGAAATGCTTTTCTTT-TCAACA
* * * * *
75085 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCGTGCTAA-CCCCAA
1 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCC-A
* * * ** * *
75149 TTCTTTTCAGGATAAGGTACCATAAACATAGT-TCTCTCATAAGGATACACAATATCGATGCTCT
65 TTCTTTT-AGGATTAGGCACCATAAACATAGTCT-TCTCATTAGGATACATGATATTGATGCTTT
* * * * *
75213 GGTTTCGA-AAGAATGGCTTTCTTCCCCCGAATTTCTATAAAGTTTAAGTTCGTACCTCAAATGA
128 GGTTTC-ACAAGAAAGGCTTT-TTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGA
* * * * * *
75277 GCCAAACATA-GATTCTAGTAATGATCTTCATTCATTTTTTAATTAGCCACTATAAACACATTCT
191 GACAAATA-AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCT
* * * * * * * *
75341 CCTCATTCGGATAAATGACACA-GATGAATTTCTTTCGCATGGAAATCATTTT-TTTACTCTATT
255 CCTCATTAGGATAAAAGATA-ATGATGATTTTCTTTTGCATGAAAATC-TTTTCTTTGCCCTATT
* * *
75404 TTCCTTAAAATCAATGTTCA-TCTCTTAAATAGGACAAGGATCGATTCTCATAATAGTCTCCAAT
318 TTCCTTAAAATCAATGTTCATTC-CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCAAT
* * * *
75468 CTTTTCAAGATTGGGAACTAAAAACACAATCTTTTCATTAGGATAAATGACATTGATGCTTTAGG
382 CTTTTCAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAATGACATTGATGCTTTGGG
75533 GTCGCAAGAAATGCTTTTCTTTTC-ACA
447 GTCGCAAGAAATGCTTTTCTTTTCAACA
* * * *
75560 TTTTTTGATAGAATCAAAGTTTGTTTCCTAAATAAGACAAACGTGAATACTCATACAAATTTCCA
1 -TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCCA
** * * * *
75625 TTCTTTTTAGGGCTAGGCACCACAAACATAGCCTTCTTATTAGGATGCATGATATTGATGCTTT-
65 TTC-TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTG
* * * *
75689 GTATTCACAAGAAAGCCTTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCATACCTCAATTAAG
129 GT-TTCACAAGAAAGGCTTTTTCCC-CCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAG
* * *
75753 ACAAATAAGTATTCTAGTAATGATCATCATTCATTTTGTGATTGGGCACTAT-AATCACATTCTC
192 ACAAATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAT-ACATTCTC
* * * * * * *
75817 CGCATTAGGATAAAAGATATTGATAATTTTCTTTTACATGAAAAACTTTTTTTTACCCTATTTTC
256 CTCATTAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * * * * * *
75882 TTTAAAATCAATGTTCATCCCTTAAATAAGACAAACATCGATTCACATAACAGTTTCCAATCTTT
321 CTTAAAATCAATGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCAATCTTT
* * ** * *
75947 CCAAGCTTAAGAACCAAAAACACAATC-CATTCATTAGGATAAATGACATTGATGCTTTGAGGTC
386 TCAAGATTGGGAACCAAAAACACATTCTC-TTCATTAGGATAAATGACATTGATGCTTTGGGGTC
* *
76011 GCAAGAAATGCTTTTCTTTCCATCA
450 GCAAGAAATGCTTTTCTTTTCAACA
* * * * *
76036 TTTTTTATAGAATCAAAGTTTGTGTCCTAAATAAGACAAACGTGAATACTTATAGTAATTCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCCAT
* * * * *
76101 GCTTTTCAAGCTTAGGCACCATAAATATAGTCTTCTC-TGTAGGAGACATGATATTGATGCTTTG
66 TCTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCAT-TAGGATACATGATATTGATGCTTTG
* * * * * * *
76165 GGTTCACTAGAAAGGCTTTTTCCCACAAATTTTTGTAATGTCTAAGTTC-AATCATCAAATGAGA
129 GTTTCACAAGAAAGGCTTTTTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTA-CCTCAAATGAGA
* * * * * *
76229 CAAATATGGATTCCAATAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACATATTCTCCT
193 CAAATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCT
* * * * *
76294 CATTAGGATAAATGATACTGATGATTTTCTTTTGCACGGAAATATTTTCTTTGC
258 CATTAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
76348 TCTTGAAAAC
Statistics
Matches: 2650, Mismatches: 435, Indels: 160
0.82 0.13 0.05
Matches are distributed among these distances:
473 9 0.00
474 459 0.17
475 1255 0.47
476 487 0.18
477 419 0.16
478 19 0.01
479 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (474 bp):
TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATTCCCAT
TCTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGT
TTCACAAGAAAGGCTTTTTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAA
ATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCTCAT
TAGGATAAAAGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
AATCAATGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCAATCTTTTCAAG
ATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAATGACATTGATGCTTTGGGGTCGCAAGA
AATGCTTTTCTTTTCAACA
Found at i:74556 original size:951 final size:948
Alignment explanation
Indices: 72209--76347 Score: 4638
Period size: 951 Copynumber: 4.4 Consensus size: 948
72199 TAAGCTTTCA
* * * * *
72209 CTTTGGTGTCGCAAGAAAAGCTTTTCCTTGCAACGTTTTTAATAGAATCAAAGTTTATCTCTTAA
1 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
72274 ATAAGACAAACATGAGTACTTATACTAA-CCCCAATTCTTTTTAGGATTAGGCATCATAAACATA
66 ATAAGACAAACATGAATACTCATACTAATCCCC-ATTC-TTTTAGGATTAGGCACCATAAACATA
* ** * * ** *
72338 GTTTTC-CTAAAAGGATACATGATAT-TATGCTTTGGTTTCGA-AAAAAAGATTTTTTTTCCCTC
129 GTCTTCTC-ATTAGGATACATGATATCGATGCTTTGGTTTC-ACAAGAAAG--GCTTTTT-CCAC
* * *
72400 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG-CTAAACATGGATTCGAGTAATGATCTT
189 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AAACATAGATTCTAGTAATGATCTT
* * * *
72464 CATTCATTTTGTGATTAGGCACTGTAAACACATTCACCACCTTAGGATAAATGATACTGATGATT
253 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATT
* * * *
72529 TTTTTTTGCATGGAAATCATTTCTTTGTCCTATTTTCCTTAAAAACAAAGTTCATCTG-TTAAAT
318 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-GCTTAAAT
* * *
72593 AAGACAAGCATTGATTCTTATAACTA-TCTCCAAGCTTTTCAAATATTGGGAACCAAAAACACAT
382 AAGACAAGCATCGATTCTCATAA-TAGTCTCCAAGCTTTTCAAAGATTGGGAACCAAAAACACAT
* * *
72657 TCCTTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGC-TTT-TTTG--A---
446 TCTTTTCATTAGGATAAATGACATTGATGCTTTAGGGTCGCAAGAAAAGCTTTTCTTTGCAATTT
* * * * * *
72715 --TG---GAATCAAAGTTTGTCTCATCAATAAGGCAAACATGAATACTTATCCTAATCC-CCATT
511 TTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATAC-AAACCTCCATT
* * * * * * * *
72774 ATTTTTAGAATTAGGCACCATAAACAAAG-TCCTCTTATTTGGATACATGATATTCATGCTTTGG
575 CTTTTTAGGATTAGGCACCACAAACATAGCT-TTCTCATTAGGATACATGATATTGATGC-TTGG
* * * * * *
72838 T-TTCACCAGAAAGGCTTTTTTCCCACCAATTTTTATAAAGTCTAGGTTCGTGCCTCAAATGAGA
638 TATTCACAAGAAA-GCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGA
* * * * * * * *
72902 TAAACATGGATTCTTGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAATACATTCTCTT
702 CAAATAAGTATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* *
72967 CATTAGGATAAAAGATA-ATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
767 CATTAGGATAAAAGATATA-GAT-AATTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCC
** * * ** * *
73031 TTAAAATCAATGTTCATTACTTAAATAAGGCGAGGATCT-ATTCTCGTAATAGTCTCCAATCTTT
830 TTAAAATCAATGTTCATCCCTTAAATAAGACAAACAT-TGATTCTCATAATAGTCTCCAAGCTTT
** * ** *
73095 T-CAAGATTGGGAACTAAAAACACATTCTTTTTATTAGGATAAATGACATTGATG
894 TCCAAGATTATGAACCAAAAACACATTCCCTTCATTAGGATAAATGACATTGATG
* * * * * * * * *
73149 CTTTGGGGTCGTAAGAAATGCTTTT-TTTTCACCATTTTTGATAGAATCTAAGTTGGTCTCCTAA
1 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * *
73213 ATAAGACAAACGTGAATACTCATACAAATTCCCATTCTTCTTAGGGTTAGGCACCACAAGCATAG
66 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTT-TTAGGATTAGGCACCATAAACATAG
* * * * * * *
73278 TCTTCTCATTAGGATATATGATATTGATGCTTTGGATTCGCAAGAAAGGGCATTTTCCCAACAAG
130 TCTTCTCATTAGGATACATGATATCGATGCTTTGGTTTCACAAGAAA-GGC-TTTTTCCACCAAT
* * * * *
73343 TTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGAGAAATA-AGGATTTTAGTAATGTTCTTCATT
193 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATA-GATTCTAGTAATGATCTTCATT
* * * * *
73407 CA-TTTATGATTAGGCATTATAATCACATTCTCCTTATTAGGATAAATGATACTTATGATTTTCT
257 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCT
* ** *
73471 TTTCCATAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CTTTAAAAAAGA
322 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCGC-TTAAATAAGA
* * *
73535 CAAGCATCGATTCTCGTAATAGTCTCCAAGCTTTTCAAAGATTGTGAACCAAAAACACATT-TCC
386 CAAGCATCGATTCTCATAATAGTCTCCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTCT-T
** * * * * *
73599 TTCATTAGGATGCATCACATTAATGCTTT-GGTGTCACTAGAAAAGCTTTTCTTGGCAATGTTTT
450 TTCATTAGGATAAATGACATTGATGCTTTAGG-GTCGCAAGAAAAGCTTTTCTTTGCAAT-TTTT
* * * * *
73663 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCGTACTAACCGCAATTCTT
513 TGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACAAACCTCCATTCTT
* * * * *
73728 TTCAGGATAAGGCACCATAAACATAGCTTTCTCATAAGGATACACGATATTGATGCTCTGGT-TT
578 TTTAGGATTAGGCACCACAAACATAGCTTTCTCATTAGGATACATGATATTGATGCT-TGGTATT
* * *
73792 CGA-AAGAAAGTCTTTCTTCCC-CCTAATTTTTGTAAAGTCTAAGTTCATACCTCAAATTAGCCA
642 C-ACAAGAAAGCCTTT-TTCCCACC-AATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACA
* *
73855 AACGT-AG-ATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACAATAAACACATTCTCCT
704 AA--TAAGTATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* * * * *
73918 TATTAGGATAAAAGACATAGATGAATTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCT
767 CATTAGGATAAAAGATATAGAT-AATTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * *
73983 CAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATTGATTCTCATAACTA-TCTCCAAGCTTTT
831 TAAAATCAATGTTCATCCCTTAAATAAGACAAACATTGATTCTCATAA-TAGTCTCCAAGCTTTT
* * *
74047 CCTATATTATGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
895 CCAAGATTATGAACCAAAAACACATTCCCTTCATTAGGATAAATGACATTGATG
* *
74101 CTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTCTCTTCA
1 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
74166 ATAAGACAAACATGAATACTCATACTAATCCCCATTCCTTTTAGGATTACGCATCATAAACATAG
66 ATAAGACAAACATGAATACTCATACTAATCCCCATT-CTTTTAGGATTAGGCACCATAAACATAG
* * * *
74231 TCCTCTCATTCGGATACATGATATCCATGCTTTGGTTTCACAAGAAAGGGTTTATTCCACCAATT
130 TCTTCTCATTAGGATACATGATATCGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCACCAATT
* * * * *
74296 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTACTAATGATATTTATTCT
194 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCA
* * * * *
74361 TTTTGTGATTAGGCACTATATATACATTCTCCTTATTAGGATAAAAGATATTGAT-ATTTTCTTT
259 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTT
* * *
74425 TACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCGCTTAAATAAGACAA
324 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCGCTTAAATAAGACAA
* * * * * *
74490 GGATCGATTCTCGTAATAGTCTCTAATCTTTTC-AAGATTGGGAACTAAAAACACTTTCTTTTCA
389 GCATCGATTCTCATAATAGTCTCCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTCTTTTCA
* * * ***
74554 TTAGGATAAATGACGTTGATGCTTTAGGGTCGCAAGAAATGCTTTTCTTTTCACCGCTTTTGATA
454 TTAGGATAAATGACATTGATGCTTTAGGGTCGCAAGAAAAGCTTTTCTTTGCA-ATTTTTTGATA
* ** **
74619 GAATCAAAGTTTGTCTCCTAAATCAGACAAACGCGAATACTCATACAAATTTCCATTCTTTTTAG
518 GAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACAAACCTCCATTCTTTTTAG
* * * * *
74684 GGTTAGACACCACAAACATAGCATTCTCATTAGGATACATGATATTGGTGCTTTGTATTCACAAG
583 GATTAGGCACCACAAACATAGCTTTCTCATTAGGATACATGATATTGATGCTTGGTATTCACAAG
* *
74749 AAAGGCCTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATAAGTA
648 AAA-GCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAATAAGTA
* * * * *
74814 TTCTAGTAACGATCTTCATTCGTTTTGTGATTGGGTACTATAATCACATTCTCCTCATTAGGATA
712 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
*
74879 AAAGATATTA-AT-ATTTTTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAT
777 AAAGATA-TAGATAATTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAT
* * * * ** *
74942 GTTCTTCTCTTAAATAAGACAAACATGGATTCTCGTAATAGTCTCCAAGCTTTTTAAAGATTGTG
841 GTTCATCCCTTAAATAAGACAAACATTGATTCTCATAATAGTCTCCAAGCTTTTCCAAGATTATG
* ** * *
75007 AACCAAAAACACATTTCCTTCATTAGGATGCATCACATTAATG
906 AACCAAAAACACATTCCCTTCATTAGGATAAATGACATTGATG
* * ** *
75050 CTTTGGTGTCGCTAGAAAAGCATTTCTTTGTAA-TGTTTTTGATAAAATCAAAGTTTGTCTCTTA
1 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACT-TTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
75114 AATAAGACAAACATGAATACTCGTGCTAA-CCCCAATTCTTTTCAGGATAAGGTACCATAAACAT
65 AATAAGACAAACATGAATACTCATACTAATCCCC-ATTCTTTT-AGGATTAGGCACCATAAACAT
* ** * * *
75178 AGT-TCTCTCATAAGGATACACAATATCGATGCTCTGGTTTCGA-AAGAATGGCTTTCTTCCCCC
128 AGTCT-TCTCATTAGGATACATGATATCGATGCTTTGGTTTC-ACAAGAAAGGCTTT-TTCCACC
* * * * *
75241 GAATTTCTATAAAGTTTAAGTTCGTACCTCAAATGAGCCAAACATAGATTCTAGTAATGATCTTC
190 -AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTC
* * * * * * *
75306 ATTCATTTTTTAATTAGCCACTATAAACACATTCTCCTCATTCGGATAAATGACACAGATGAATT
254 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTT
* * * * *
75371 TCTTTCGCATGGAAATCATTTT-TTTACTCTATTTTCCTTAAAATCAATGTTCATCTCTTAAATA
319 TCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCGCTTAAATA
* * * * *
75435 GGACAAGGATCGATTCTCATAATAGTCTCCAATCTTTTC-AAGATTGGGAACTAAAAACACAATC
383 AGACAAGCATCGATTCTCATAATAGTCTCCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTC
* *
75499 TTTTCATTAGGATAAATGACATTGATGCTTTAGGGTCGCAAGAAATGCTTTTCTTTTCACATTTT
448 TTTTCATTAGGATAAATGACATTGATGCTTTAGGGTCGCAAGAAAAGCTTTTCTTTGCA-ATTTT
* * **
75564 TTGATAGAATCAAAGTTTGTTTCCTAAATAAGACAAACGTGAATACTCATACAAATTTCCATTCT
512 TTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACAAACCTCCATTCT
** * * * *
75629 TTTTAGGGCTAGGCACCACAAACATAGCCTTCTTATTAGGATGCATGATATTGATGCTTTGTATT
577 TTTTAGGATTAGGCACCACAAACATAGCTTTCTCATTAGGATACATGATATTGATGCTTGGTATT
* *
75694 CACAAGAAAGCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAATTAAGACAAAT
642 CACAAGAAAGCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAAT
* * * *
75759 AAGTATTCTAGTAATGATCATCATTCATTTTGTGATTGGGCACTATAATCACATTCTCCGCATTA
707 AAGTATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* * * * *
75824 GGATAAAAGATATTGATAATTTTCTTTTACATGAAAAACTTTTTTTTACCCTATTTTCTTTAAAA
772 GGATAAAAGATATAGATAA-TTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * * * *
75889 TCAATGTTCATCCCTTAAATAAGACAAACATCGATTCACATAACAGTTTCCAATC-TTTCCAAGC
836 TCAATGTTCATCCCTTAAATAAGACAAACATTGATTCTCATAATAGTCTCCAAGCTTTTCCAAGA
* * *
75953 TTAAGAACCAAAAACACAATCCATTCATTAGGATAAATGACATTGATG
901 TTATGAACCAAAAACACATTCCCTTCATTAGGATAAATGACATTGATG
* * * *
76001 CTTTGAG-GTCGCAAGAAATGCTTTTCTTTCCATCATTTTTT-ATAGAATCAAAGTTTGTGTCCT
1 CTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCCAAC-TTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * * * * *
76064 AAATAAGACAAACGTGAATACTTATAGTAATTCCCATGCTTTTCAAGCTTAGGCACCATAAATAT
64 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT-AGGATTAGGCACCATAAACAT
* * * * *
76129 AGTCTTCTC-TGTAGGAGACATGATATTGATGCTTTGGGTTCACTAGAAAGGCTTTTTCCCACAA
128 AGTCTTCTCAT-TAGGATACATGATATCGATGCTTTGGTTTCACAAGAAAGGCTTTTT-CCACCA
* * * * * * *
76193 ATTTTTGTAATGTCTAAGTTCAAT-CATCAAATGAGACAAATATGGATTCCAATAATGATCTTCA
191 ATTTTTGTAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCA
* *
76257 TTCATTTTGTGATTGGGCACTATAAACATATTCTCCTCATTAGGATAAATGATACTGATGATTTT
255 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTT
* *
76322 CTTTTGCACGGAAATATTTTCTTTGC
320 CTTTTGCATGGAAATCTTTTCTTTGC
76348 TCTTGAAAAC
Statistics
Matches: 2700, Mismatches: 422, Indels: 144
0.83 0.13 0.04
Matches are distributed among these distances:
937 3 0.00
938 200 0.07
939 161 0.06
940 50 0.02
941 1 0.00
942 1 0.00
948 14 0.01
949 292 0.11
950 376 0.14
951 1080 0.40
952 345 0.13
953 174 0.06
954 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (948 bp):
CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAGGATTAGGCACCATAAACATAGT
CTTCTCATTAGGATACATGATATCGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCACCAATTTT
TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATT
TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTG
CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCGCTTAAATAAGACAAGC
ATCGATTCTCATAATAGTCTCCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTCTTTTCATT
AGGATAAATGACATTGATGCTTTAGGGTCGCAAGAAAAGCTTTTCTTTGCAATTTTTTGATAGAA
TCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACAAACCTCCATTCTTTTTAGGAT
TAGGCACCACAAACATAGCTTTCTCATTAGGATACATGATATTGATGCTTGGTATTCACAAGAAA
GCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAATAAGTATTCT
AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAG
ATATAGATAATTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCA
TCCCTTAAATAAGACAAACATTGATTCTCATAATAGTCTCCAAGCTTTTCCAAGATTATGAACCA
AAAACACATTCCCTTCATTAGGATAAATGACATTGATG
Found at i:77121 original size:13 final size:13
Alignment explanation
Indices: 77103--77127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77093 CATTTTATGG
77103 TGTATCGATACAT
1 TGTATCGATACAT
77116 TGTATCGATACA
1 TGTATCGATACA
77128 AGTTTAGCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:77203 original size:20 final size:20
Alignment explanation
Indices: 77178--77215 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
77168 TACATCTTTT
77178 TCAAGTATCGATAAAATGCA
1 TCAAGTATCGATAAAATGCA
*
77198 TCAAGTATCGATACAATG
1 TCAAGTATCGATAAAATG
77216 TATCGATACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (20 bp):
TCAAGTATCGATAAAATGCA
Found at i:85901 original size:33 final size:33
Alignment explanation
Indices: 85864--85929 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
85854 TCTTTTTCAA
85864 GTATCGATAAAATGCAACATGTATCAATACAAT
1 GTATCGATAAAATGCAACATGTATCAATACAAT
*** *
85897 GTATCGATACTGTGCAACATGTATCGATACAAT
1 GTATCGATAAAATGCAACATGTATCAATACAAT
85930 TAAATGTGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (33 bp):
GTATCGATAAAATGCAACATGTATCAATACAAT
Found at i:87119 original size:476 final size:474
Alignment explanation
Indices: 86221--90589 Score: 4561
Period size: 476 Copynumber: 9.2 Consensus size: 474
86211 CCTAACAGCT
* * * *
86221 CTATTTTCCTTAAAATCAAAGTTCATCCCTTT-AATAAGAGAAGCATCAATTCTCATAACAGTCT
1 CTATTTTCCTTAAAATCAAAGTTCAT-CCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT
** * * * * * *
86285 CCATTCTTTT-TAAGATTGGGAACCAAAAACAC-TTTCCCTTCATTTGGATGCGTGGCATTAATG
65 CCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTT-CCTTCATTAGGATACATGACATTGATG
** * * * * *
86348 CCATGGTGTCGTAAGAAAAGCTTTTCTTTCTAACGTTTTTGATAAAATCAAAGTTTGTCTTTTAA
129 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAAC-TTTTTTATAGAATCAAAGTTTGTCTCTTAA
* * ***
86413 ATAAGACAAACATGAACACTCATACTAATCCCTATTCTTTTCAAGG-TTAGGCACTGCAAACATA
193 ATAAGACAAACATGAATACTCATACTAA-CCCCATTCTTTTC-AGGATTAGGCACCATAAACATA
* * * * * *
86477 GTCTTCTTGTTAGGATACATGATAATT-TTACTTTGGTTTCACGAGAAAGGCTTTTTCCCACAAA
256 GTCTTCTTATAAGGATACATGAT-ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCAA
* * * * * *
86541 TTTTTGTAATGTCTAAGTTCAAT-TCTCAAATAAGACAAACATGGATTCCAGTAGTGATCTTCAT
320 TTTTTGTAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * * *
86605 TCATTTTGTGATTGGGCACTATAAACACCTTCTCCTCATTAGGATAAAAGATATTGAGGATTTTC
384 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTC
* *
86670 TTTTGCATGGAAATCTTTTCTTTACT
449 TTTTGCATGGAAATCTTTTCTTTGCC
* * * * * *
86696 CTGTTTTCCTTAAAATCAAAGTGCATCCTTTAAATAAGATAGGCATCAATTCTTGTAATAGTCTC
1 CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
* *** *
86761 CAAGCTTTTCAATGATCATGAACCAAAAACACATTTCCTTCATTAGGATGCATGACATTGATGCT
66 CAAGCTTTTCAAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATGCT
* * ** *
86826 TTGGGGTTGCAAGAAAAGCTTTTCTTTGTAACCTTTTTTATCGAATCAAAGTTTGTCTCTTAAAT
131 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCAA-CTTTTTTATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * * * *
86891 AAGATAAATATGAGTACCCATACTAACCCCAATTCTTTTTAGGATTAGGCATCACAAACATAGTT
195 AAGACAAACATGAATACTCATACTAACCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
86956 TTCTTATAAGGATACACGATATTGATGCTCTGGTTTTGA-AAGTAAGGCTTTCTTCCCCCCAATT
259 TTCTTATAAGGATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTT-TTCCCACCAATT
* * * * * * * *
87020 TTTATAAAGTTTAAGTTTGTGCGTCAAATGAGCCAAACATGAATTCTAGTAAAGCTCTTCATTCA
322 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * *
87085 -TTTGGGATTAGGCACTATAAATACATTTTCCTCATTAGGAT-AATGACACT-ATTGATTTTCTT
387 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGA-TGATTTTCTT
** *
87147 TTGCACAGAAATCTTTTCTTTACC
451 TTGCATGGAAATCTTTTCTTTGCC
* * * * * *
87171 TTATTTTCCTTAAAATCAATGTTCATCGC-TTAAATAAGGCAAGGATCGATTCTCATAAAAGTCT
1 CTATTTTCCTTAAAATCAAAGTTCATC-CTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT
* * * *
87235 CCAATCTTTTC-AAGATTGGAAACCAAAAACACA-TTCTTTTCATTAGGATAAATGACATTGATG
65 CCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTTC-CTTCATTAGGATACATGACATTGATG
* * * *
87298 C-TCGGGGTCGCAAGAAATGCTTTTCTTTCCAA-TGTTTTTGATAGAATCAAAGTTTGTGTCTTA
129 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACT-TTTTT-ATAGAATCAAAGTTTGTCTCTTA
* * * * *** ** *
87361 AATGAGATAAACGTGAATACTTATACTAATCCTTTTTCCCTTCAGGATAAGGCACCATAAACATA
192 AATAAGACAAACATGAATACTCATACTAA-CCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* ** * * *
87426 GTCTTCTCA-ATAGCTTACATGATATTGATGCTTTGGTATCACCAGAAAGGCTTTTTCCCACAAA
256 GTCTTCTTATA-AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCAA
* * * ** * *
87490 TTTTTGTAATGTCTAAATTCGAT-CCTCAAATGTGACAAACATAAATTCCAGTAACGATCTTCAT
320 TTTTTGTAAAGTCTAAGTTCG-TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * *
87554 TCATTTTGTGATTGGGCACTATAAACACATTCTCTTTATTAGGATAAATGATACTGATGATTTTC
384 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTC
** * *
87619 TTTCCCATGAAAATCTTTTCTTAGCC
449 TTTTGCATGGAAATCTTTTCTTTGCC
* * * * * *
87645 CCATTTTCCTTAAAATCGAAGTTCACCCTTTAAATAGGACAAGCATCGA----CATAATAGTCGC
1 CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
* * * * * *
87706 CAAGCATTTCAAAGATTGTGAACCAAAAACATATTTCCTTCATTAGGATGCATAACATTAATGCT
66 CAAGCTTTTCAAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATGCT
* * * * * * *
87771 TTGGTGTTGCTAGAAAAGTTTTTCTTTGCAATGTTTTTTTGTAGAATCAAAGTTTGTTTCTTAAA
131 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCAA--CTTTTTTATAGAATCAAAGTTTGTCTCTTAAA
* * *
87836 TAAGACAAACATGAATACTCATACTAACCCCAATTCTTTTTAGGATTAGGCATCATAAACATTGT
194 TAAGACAAACATGAATACTCATACTAACCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * *
87901 TTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACCAGAAAGGCTTTTTCCCACAAATTT
258 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCAATTT
* * * *
87966 TTGTAATGT-TAAAATTTGAT-CCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTC
323 TTGTAAAGTCT-AAGTTCG-TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* *
88029 ATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTCTT
386 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTT
*
88094 TTCCATGGAAATCTTTTCTTTGCC
451 TTGCATGGAAATCTTTTCTTTGCC
* * * * *
88118 CCATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAGGGCAAGCATTGATTCTTGTAATAGTCTC
1 CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
* * * * *
88183 CAAGCTTTTCAATGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACGTGACATTTATGCT
66 CAAGCTTTTCAAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATGCT
** *
88248 TTGGTGTCATAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
131 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACTTTTTT-ATAGAATCAAAGTTTGTCTCTTAAAT
* *
88313 TAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
195 AAGACAAACATGAATACTCATACTAA-CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * *
88378 CTCTTGTCTA-GATACATGATACTCATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATT
259 TTCTTAT-AAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACCAATT
* * * *
88442 TTTGTGAAGTCTAAGTTCGTGCTTTAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCA
322 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * *
88507 TTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGAT-AGTAGATATTGATGATTTTTTT
387 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT-GATACTGATGATTTTCTT
* *
88571 TTGCATGGAAATCTTATCTTTGTC
451 TTGCATGGAAATCTTTTCTTTGCC
* * * * *
88595 TTATTTTCCTTAAAATCAATGTTTATCGC-TTAAATAACACAAGGATCGATTCTCGTAATAGTCT
1 CTATTTTCCTTAAAATCAAAGTTCATC-CTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT
* * * *
88659 CTAATG-TTTT-AAAGATTGGGAACTAAAAACACA-TTCTTTTCATTAGGATAAATGACATTGAT
65 CCAA-GCTTTTCAAAGATTGGGAACCAAAAACACATTTC-CTTCATTAGGATACATGACATTGAT
* ** * * * *
88721 GCTTTGAG-GTCGCAAGAAATGCTTTTCTTT-TTACTGTTTTTGGTAGAATCCAAGTTTGCCTCC
128 GCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCCAACT-TTTTT-ATAGAATCAAAGTTTGTCTCT
* ** * * * * * * *
88784 TAAATAAGGCAAATGTGAATACTCATGCAAATTCCCATTCCTTCCAGGATTAGGCACCACAATCA
190 TAAATAAGACAAACATGAATACTCATACTAA-CCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * * * * ** * ** *
88849 TGGTCTTCTCATTAGAATACATGATATTGATGCCTTGCATTCACAAAAAAATCTTTTTCTCACCA
254 TAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCA
* * * * * *
88914 ATTTTTATAAAGTCTTAGTTCCTGCCTCAAATGAGACAAATAAGGATTCTAGTAATAATCTTCAT
319 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * *
88979 TCA-TTTGTGATTAGGCACTATAATCACATTCTCCTTATTAGGATAAATGATACTGCTGATTTTC
384 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTC
* ***
89043 TTTTTCACAAAAATCTTTTCTTTGCC
449 TTTTGCATGGAAATCTTTTCTTTGCC
* * *
89069 CTATTTTCCTCAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTA
1 CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
** * * * *
89134 CAAGCTTTTCAAAGATTATGAACCAAAAACACATTTTCCTTCATTAGGATGCATGGCATTAATTC
66 CAAGCTTTTCAAAGATTGGGAACCAAAAACACA-TTTCCTTCATTAGGATACATGACATTGATGC
* * * *
89199 TTTGGTGTCGCTAG-AAAGCGTTTCTTTGCAA-TGTTTTTAATAGAATTAAAGTTTGTCTCTTAA
130 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACT-TTTTT-ATAGAATCAAAGTTTGTCTCTTAA
* ** **
89262 ATGAGACAAACATGAATACTCGCACTAACCTTAATTCTTTTCAGGATTAGGCACCATAAACATAG
193 ATAAGACAAACATGAATACTCATACTAACC-CCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * *
89327 TTTTCTTATAAGGATACACGATATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCCTCTAA
257 TCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTC-ACAAGAAAGGCTTT-TTCCCACCAA
* *
89391 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG-CTAAACATAGATTCTAGTAATGGTTCTTCA
320 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AAACATGGATTCTAGTAAT-GATCTTCA
* * * *
89455 TTCATTTTGTGATTAGGCACTATAAACACATTATCCTAATTAGGATAAACGATACTGATGAATTT
383 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTT
* *
89520 CTTTTGCATGGAAGTCATTTCTTTGCC
448 CTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
89547 CTATTTTCCTTAATATCAAAGTTTATCCCTTAAATAAGAC-A-C--CCA---TCG--ATA-TCTC
1 CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
* * * *
89602 CAAGCTTTTCAAAGATTGGGAACCAAAACCACA-TTCCTTTCATTAAGATACACGACATTTATGC
66 CAAGCTTTTCAAAGATTGGGAACCAAAAACACATTTCC-TTCATTAGGATACATGACATTGATGC
* *
89666 TTTGGTGTCGCAAGAAAAGTTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTATCTTAAA
130 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACTTTTTT-ATAGAATCAAAGTTTGTCTCTTAAA
* *
89731 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCATCATAAACATAGT
194 TAAGACAAACATGAATACTCATACTAA-CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * ** * ** * *
89796 CCTCTCATTTGGATACATGAAATTCTTGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCTACCAATT
258 CTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACCAATT
* * * * * * *
89861 TTTGTAGAA-TCTAAGTTCATGCCTCGAATTAGAGAAACATGGATTATGGTAATGATTTTCAATT
322 TTTGTA-AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC-ATT
* * * * *
89925 -ATTTTGTGATTAGGCATTATAAACAGATTCTCCTCTTTAGGATAAATGATGCTGATAATTTTCT
385 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCT
* * *
89989 TTTGTATAGAAATCATTTCTTTGCC
450 TTTGCATGGAAATCTTTTCTTTGCC
* * * * ** * *
90014 TTATTTT-TTTCAAAATCAAAGTTCAT-CTCTTACATGAGACAAGCATTAATTCTTGTAACAGTC
1 CTATTTTCCTT-AAAATCAAAGTTCATCCT-TTAAATAAGACAAGCATCGATTCTCGTAATAGTC
* ** * ** * * ** * **
90077 TCTATTCTTTT-TAATTTTGGGAACCAAAAACAAATTCCCTTCGCTAGGATAAAAAACATTGATG
64 TCCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATG
*
90141 CTTTAGG-GTCGCAAGAAATGCTTTTCTTTCC-ACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
129 CTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCAACT-TTTTT-ATAGAATCAAAGTTTGTCTCTT
* * * *
90204 AAATAAGACAAACATGAATAGTCATACTAATCGCTATTCTTTTCAGGAGTAGGCACCATAAACAT
191 AAATAAGACAAACATGAATACTCATACTAA-CCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
90269 AGACTTCTTATAAGGATACACGATATTGATGCCTTGGTCTCTCAAGAAAGGCTTTCTTCCCCCCA
255 AGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCACCA
* * * *
90334 ATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGCCAAACATGGATTCTAGTAAAGATCTTCAT
319 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * *
90399 TTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTT
384 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTC
* *
90464 TTTTGCTTGAAAATCTTTTCTTTGCC
449 TTTTGCATGGAAATCTTTTCTTTGCC
* * * * *
90490 CTATTTTTCTTAAAATCAAAGTT-ATCCCTTAAATAAGGCAAGCATCAATTCTCGTAATATTCTC
1 CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
**
90554 CATTCTTTTC-AAGATTGGGAA-CAAGAAACAC-TTTCC
66 CAAGCTTTTCAAAGATTGGGAACCAA-AAACACATTTCC
90590 AACGTTTTTG
Statistics
Matches: 3218, Mismatches: 582, Indels: 189
0.81 0.15 0.05
Matches are distributed among these distances:
466 7 0.00
467 143 0.04
468 223 0.07
469 12 0.00
470 18 0.01
471 46 0.01
472 100 0.03
473 485 0.15
474 272 0.08
475 460 0.14
476 942 0.29
477 396 0.12
478 114 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
CAAGCTTTTCAAAGATTGGGAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACTTTTTTATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATACTCATACTAACCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
CTTATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACCAATTTTTG
TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCA
TGGAAATCTTTTCTTTGCC
Found at i:91234 original size:159 final size:158
Alignment explanation
Indices: 90975--91261 Score: 341
Period size: 159 Copynumber: 1.8 Consensus size: 158
90965 TAGCAGTCTC
* * **
90975 TATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAAAGAAAATTGATGGTT
1 TATTCTTTTCAAGATTAGGAACCAAAAACACAGTCCCTTCATTAGGATAAAGAAAATTGATGCCT
* * *
91040 TGGGGTCTCAAGAAATGCTTTTCTTTCCACTATTTTTGATAGAA-TCAAAGTTTGTCTCTTAAAT
66 TGGGCTCTCAAGAAAAGCTTTTCTTTCCACTATTTTTG-TA-AAGTCAAAGTCTGTCTCTTAAAT
91104 AAAATAAACATAAATAGTCATACTAATCCT
129 AAAATAAACATAAATAGTCATACTAATCCT
* * * * * *
91134 TATTCTTTTTAGGATTAGGCACCAAAAACATAGTCCTCTT-ATTAGGATACACG-ATATTGATGC
1 TATTCTTTTCAAGATTAGGAACCAAAAACACAGTCC-CTTCATTAGGATA-AAGAAAATTGATGC
* * *
91197 CTTGGTCTCTCAAGAAAAGCTTTT-TTTCC-CTCAATTTTTGTAAAGTCTAAGTCTGTGTCTTAA
64 CTTGGGCTCTCAAGAAAAGCTTTTCTTTCCACT--ATTTTTGTAAAGTCAAAGTCTGTCTCTTAA
91260 AT
127 AT
91262 GAGCCAAGCA
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
157 4 0.04
158 24 0.22
159 74 0.69
160 5 0.05
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (158 bp):
TATTCTTTTCAAGATTAGGAACCAAAAACACAGTCCCTTCATTAGGATAAAGAAAATTGATGCCT
TGGGCTCTCAAGAAAAGCTTTTCTTTCCACTATTTTTGTAAAGTCAAAGTCTGTCTCTTAAATAA
AATAAACATAAATAGTCATACTAATCCT
Found at i:91957 original size:19 final size:19
Alignment explanation
Indices: 91933--91972 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
91923 CCAGGCTTTT
*
91933 CAACATAGGGAACGAAAAA
1 CAACATAGGGAACCAAAAA
91952 CAACATAGGGAACCAAAAA
1 CAACATAGGGAACCAAAAA
91971 CA
1 CA
91973 CTTTCCCGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.57, C:0.20, G:0.17, T:0.05
Consensus pattern (19 bp):
CAACATAGGGAACCAAAAA
Found at i:92979 original size:476 final size:470
Alignment explanation
Indices: 90584--93117 Score: 2455
Period size: 476 Copynumber: 5.3 Consensus size: 470
90574 ACAAGAAACA
* * * * * * * *
90584 CTTTCCAACGTTTTTGATAGAGTCAGAGTTTATCTCTTAAATAAGATAAATGATGAATACTCATG
1 CTTTCC-ACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CATAAATAGTCATA
* * * *
90649 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAGCATAGTCTTCTTACTAA-GATACA-AGAT
64 CTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAATCTTCTTA-TAAGGATACACA-AT
* * * * *
90712 ATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTCACACCAATTTTTGTAAAGTCTAAATTCGTG
127 ATTGATGCTTTGG-TTCTCAAGAAAAGC-TTTTTCTC-CCAATTTTTGTAAAGTCTAAGTTTGTG
* * * * * * *
90777 CCTTAAA-AGAGACAAACATGGATTCTAGTAGTGCTTTTCATTCATTTTCTGATTAGGCATTATA
189 CCTCAAATA-AGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
90841 AACACATTTTCCTCCTCAAGGTATAAGAT-ATTGGTGAT-TTTTTTTTTGCATGGAAATCTTTTC
253 AACACATTTTCCTCAT-TAGG-ATAA-ATGA-TGATGATGTTTTCTTTTGCATGGAAATATTTTC
* *
90904 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCAT-GAATTCTTGTAG
314 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-TTAAATAAGACAAGCATCG-ATTCTCGTAA
90968 CAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAAAGAAA-AT
377 CAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAAA-AAACAT
* * *
91032 TGATGGTTTGGGGTCTCAAGAAATGCTTTT
441 TGATGCTTTGGGATCACAAGAAATGCTTTT
* * *
91062 CTTTCCACTATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAATAAACATAAATAGTCATAC
1 CTTTCCAC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATAC
* * * * * *
91127 TAATCCTTATTCTTTTTAGGATTAGGCACCAAAAACATAGTCCTCTTATTAGGATACACGATATT
65 TAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAATCTTCTTATAAGGATACACAATATT
* * * *
91192 GATGCCTTGGTCTCTCAAGAAAAGCTTTTTTTCCCTCAATTTTTGTAAAGTCTAAGTCTGTGTCT
130 GATGCTTTGGT-TCTCAAGAAAAGCTTTTTCT-CC-CAATTTTTGTAAAGTCTAAGTTTGTGCCT
* * * *
91257 TAAATGAGCCAAGCATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAAAAACA
192 CAAATAAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * * *
91322 CATTCTCCTCGTTAGGATAAATGAT-ACTGATGATTTTTTTTTGCATGAAAATATTTTCTTTGCT
257 CATTTTCCTCATTAGGATAAATGATGA-TGATG-TTTTCTTTTGCATGGAAATATTTTCTTTGCC
* * * *
91386 TTATTTTTCTTAAAATCAAAGTTCATCCCTGAAATAAGATAAGCATCGATTCTCGTAACAGTCT-
320 CTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
** * * * * **
91450 TCAAGCTATTCAAAGATAGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGC
384 T-ATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAAAAAACATTGATGC
* *
91515 TTTGGTATCAC-A-AAA-GCTTTC
447 TTTGGGATCACAAGAAATGCTTTT
* * * *
91536 CTTTTCAACGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCGTAC
1 C-TTTCCACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATAC
* * * * *
91601 TAAT-CCTAGTTTTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACACAATAT
65 TAATCCCTA-TTCTTTTTAGGATTAGGCACCATAAACATAATCTTCTTATAAGGATACACAATAT
** * * *
91665 TGACACTTTGGTT-TCGAATGAAAAGCTTTTTTCTCCCAAAATTTTGTAAAGTCTAAGTTCGTGT
129 TGATGCTTTGGTTCTC-AA-GAAAAGC-TTTTTCTCCC-AATTTTTGTAAAGTCTAAGTTTGTGC
* * * *
91729 CTCAAATAAGCCAAACATGGATTCTAGTAATAATTTTCAATCATTTTGTGATTAGGTACTATAAA
190 CTCAAATAAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * * * *
91794 CATATTCTT-CTCATTTGGATAAATGATG-TCGATAATTTT-TTTTGCACGAAAATCTTTT-GTT
255 CACATT-TTCCTCATTAGGATAAATGATGAT-GAT-GTTTTCTTTTGCATGGAAATATTTTCTTT
* * * * * * *
91855 GACGCAAATTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAACCAGCAACAATTCTCGTAACTA
317 G-CCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAATAAGACAAGCATCGATTCTCGTAAC-A
* ** * * *
91920 -TCTCCAGGCTTTTCAACATAGGGAACGAAAAACAACATAGGGAACCAAAAACACTTTCCCGTCA
379 GTCTCTATTCTTTT---C------AA-G---------ATTGGGAACCAAAAACACATTCCCTTCA
* ** *
91984 TTAGGATACATGACATTGATGCATTGGTG-TCAC-A-AAA-GCTTTT
425 TTAGGATAAAAAACATTGATGCTTTGG-GATCACAAGAAATGCTTTT
* * * * * * *
92027 CTTTTCAACGTTTTTGATAGAATTAAAGTTTGTTTCTTAAATAAAACAAAAGATGAATACTCATA
1 C-TTTCCACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AAACATAAATAGTCATA
* * * * * *
92092 CTAACCCCTATTCTTTTCAGGATTAGGCACCATAAGCAT-AGCTTTCTTATTATGATACA-AGAT
64 CTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAATC-TTCTTATAAGGATACACA-AT
* * *
92155 ATTGATGCTTTGGATTCGCAAGAAAAG-TAATTTTCATACCAATTTTTGTAAAGTCTAAATTTGT
127 ATTGATGCTTTGG-TTCTCAAGAAAAGCT--TTTTC-TCCCAATTTTTGTAAAGTCTAAGTTTGT
* * * * * * *
92219 GCCTCAAA-AGTGACAAACATGGATTCTAGTAGTGATCTTCATTAATTTTCTAATTATGCACTAT
188 GCCTCAAATA-AGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
92283 AAACACATTATCCTCATTAAGG-TAAAAGAT-ATGGGTGATTTTCTTTTGCATGGAAATATTTTC
252 AAACACATTTTCCTCATT-AGGATAAATGATGAT-GATG-TTTTCTTTTGCATGGAAATATTTTC
* * ** * *
92346 TTTGCCCTATTTTTCATAAAATCAAAGTTCATCCCAATAATAAGACAAGCATCGATTATTGTAAC
314 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTA-AATAAGACAAGCATCGATTCTCGTAAC
* * * * *
92411 AGTCTCCATTCTTTTAAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGGTAAAAAGCATTG
378 AGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAAAAAACATTG
* * *
92476 AAGCTTTGGGGTCGCAAGAAATGCTTTT
443 ATGCTTTGGGATCACAAGAAATGCTTTT
*
92504 CTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATAAATAGTCATAC
1 CTTTCCAC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATAC
* *
92569 TAATCCCTATTCTTTTTTGGATTAGGCACCATAAACAGAATCTTCTTATAAGGATACACAATATT
65 TAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAATCTTCTTATAAGGATACACAATATT
* * ** * *
92634 AATGCCTTGGTCTCTCAAGAATGGCTTTCTTCCCCCTAATTTTTGCAAAGTCTAAGTTTGTGCCT
130 GATGCTTTGGT-TCTCAAGAAAAGCTTT-TTCTCCC-AATTTTTGTAAAGTCTAAGTTTGTGCCT
* * * * *
92699 CAAATAAGGCAAACATGGAATCTAGTAATGATCTTCACTCATTTTGTGAGTAGGCACTATAAAAA
192 CAAATAAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
92764 CCTTTTCCTCGTTAGGATAAATGATGATGATAGTTTTCTTTTGCATGGAAATATTTTCTTTGGCC
257 CATTTTCCTCATTAGGATAAATGATGATGAT-GTTTTCTTTTGCATGGAAATATTTTCTTTGCCC
*
92829 TATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTGGTAACAGTCTCT
321 TATTTTCCTTAAAATCAAAGTTCATC-CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCT
* * * *
92894 ATTTTTTTCAATATTGGGAACCAAAGACACATTCCCTTCATTAGGATAAAAAACATTAATGCTTT
385 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAAAAAACATTGATGCTTT
92959 GGGATCACAAGAAATGCTTTT
450 GGGATCACAAGAAATGCTTTT
* * * * * * *
92980 ATTTCCATTGTCTTTGATAGAATCAAAGTTTATCTGTTAAATAAGACAAGCATAAATAGGCATAC
1 CTTTCCA-CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATAC
* * * * * * **
93045 TAATCTCAATTCCTTTAAGGATTAGGCATCATAAACA-AAGTCTTCTCATAAGGATACATGATAT
65 TAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAA-TCTTCTTATAAGGATACACAATAT
*
93109 TCATGCTTT
129 TGATGCTTT
93118 AGGGTTGCAA
Statistics
Matches: 1700, Mismatches: 272, Indels: 170
0.79 0.13 0.08
Matches are distributed among these distances:
472 5 0.00
473 85 0.05
474 290 0.17
475 33 0.02
476 572 0.34
477 284 0.17
478 42 0.02
481 2 0.00
482 1 0.00
483 1 0.00
484 2 0.00
490 1 0.00
491 111 0.07
492 183 0.11
493 84 0.05
494 4 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (470 bp):
CTTTCCACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACT
AATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAATCTTCTTATAAGGATACACAATATTG
ATGCTTTGGTTCTCAAGAAAAGCTTTTTCTCCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
TAAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
TTCCTCATTAGGATAAATGATGATGATGTTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTT
TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAAAAAACATTGATGCTTTGGGATC
ACAAGAAATGCTTTT
Found at i:94138 original size:476 final size:476
Alignment explanation
Indices: 93259--94303 Score: 1385
Period size: 476 Copynumber: 2.2 Consensus size: 476
93249 ATGATTTTCT
* * * * ** *
93259 TTCGAAAGAATAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTATGCTCGCACCTCAAATGAGCC
1 TTCGCAAGAA-AGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATAAGCC
* * * * *
93324 AAACATGGATTCTAGAAATAATCTTCATTTATTTTGTGATTAGGACTATAAACACATTCTCCTCA
65 AAACATGGATTCTAGTAATGATCTTCATTTATTTTATGATTAGCACTATAAACACATTCTCATCA
*
93389 TTAGGATAAAAGCTAATGGAGAATTTCATTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTA
130 TTAGGATAAAAGATAATGGAGAATTTCATTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTA
* * * *
93454 AAATCAAAGTTCATCCATTAAATAAGATAAGCATCGATTCTCGTAACTATCTCCATTCTTTTTTA
195 AAATCAAAGTTCATCCATTAAATAAGACAAGCATAGATTCTCGCAACTATCTCCATTCTTTTTCA
* * * *
93519 AGATTGGGAACCAAAAACACATTTTCTTTATTAGGATGCATGACATTGATTCTTTGGTGTCGCAA
260 AGATTGGGAACCAAAAACACATTTCCTTTATTAGGATACATGACATTGAGTCTTTGGTATCGCAA
* * *
93584 GAAAAGCTTTTCTTTCTAACATTTTTGATAGAATCAAAGTTTGTCCTTTAAATAAGACAAACATA
325 GAAAAGCTTTTCTTTCAAACATTTTTGATAGAATCAAAGTTTATACTTTAAATAAGACAAACATA
* * * *
93649 AATAGTCATACTAATCCCCATTCTCT-TTAGGATTAAG-CATCATAGACCCAGTCTTCCCATTAC
390 AATACTCATACTAATCCCCATTCT-TGTTAGGA-TAAGTCATCACAAACACAGTCTTCCCATTA-
93712 G-ATACATGATATTGATGCTTTGGA
452 GAATACATGATATTGATGCTTTGGA
* *
93736 TTCGCAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGCCA
1 TTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATAAGCCA
* * *
93801 AACATGGATTCGAGTAACGATCTTCATTTATTTTATGATTAGTCACTATAAACACATTCTTATCA
66 AACATGGATTCTAGTAATGATCTTCATTTATTTTATGATTAG-CACTATAAACACATTCTCATCA
* * * * * *
93866 TTAGGATAAATGATATTGGCA-ATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTT
130 TTAGGATAAAAGATAATGG-AGAATTTCATTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTT
* * *
93930 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATAGATTCTTGCAAC-AGTCTCTA-T-TTTTT
194 AAAATCAAAGTTCATCCATTAAATAAGACAAGCATAGATTCTCGCAACTA-TCTCCATTCTTTTT
93992 CAAGATTGGGAACCAAAAACACA-TTCCTTTCATTTAGGATACATGACATTGACGT-TTTGGTAT
258 CAAGATTGGGAACCAAAAACACATTTCCTTT-A-TTAGGATACATGACATTGA-GTCTTTGGTAT
* * *
94055 CGCAAGAAAAGCTTTTCTTTCAAACTTTTTTTATAGAATCAAAGTTTATATTTTAAATAAGACAA
320 CGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATAGAATCAAAGTTTATACTTTAAATAAGACAA
* ** **
94120 ACATTAATACTCATACTAATCCCCATTCTTGTTAGGATAAGTCATCACAAACATGGTCTTTTCAT
385 ACATAAATACTCATACTAATCCCCATTCTTGTTAGGATAAGTCATCACAAACACAGTCTTCCCAT
* *
94185 TAGAATATATGATATTGATGCTTTGGT
450 TAGAATACATGATATTGATGCTTTGGA
* * * * *
94212 TTCACCAGAAAGGC--TTTTCCCA-CAACTTTTTGTATAGTCTAAGCTCATGCCTCAAATCAGCC
1 TTCGCAAGAAAGGCTTTTTTCCCACCAA-TTTTTGTAAAGTCTAAGCTCGTGCCTCAAATAAGCC
*
94274 AAACATGGATTCTAATAATGATCTTCATTT
65 AAACATGGATTCTAGTAATGATCTTCATTT
94304 TGTAAAGTCT
Statistics
Matches: 496, Mismatches: 62, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
473 3 0.01
474 72 0.15
475 34 0.07
476 254 0.51
477 132 0.27
478 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (476 bp):
TTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATAAGCCA
AACATGGATTCTAGTAATGATCTTCATTTATTTTATGATTAGCACTATAAACACATTCTCATCAT
TAGGATAAAAGATAATGGAGAATTTCATTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAA
AATCAAAGTTCATCCATTAAATAAGACAAGCATAGATTCTCGCAACTATCTCCATTCTTTTTCAA
GATTGGGAACCAAAAACACATTTCCTTTATTAGGATACATGACATTGAGTCTTTGGTATCGCAAG
AAAAGCTTTTCTTTCAAACATTTTTGATAGAATCAAAGTTTATACTTTAAATAAGACAAACATAA
ATACTCATACTAATCCCCATTCTTGTTAGGATAAGTCATCACAAACACAGTCTTCCCATTAGAAT
ACATGATATTGATGCTTTGGA
Found at i:94357 original size:62 final size:62
Alignment explanation
Indices: 94239--94360 Score: 154
Period size: 62 Copynumber: 2.0 Consensus size: 62
94229 TCCCACAACT
* * ** *
94239 TTTTGTATAGTCTAAGCTCATGCCTCAAATCAGCCAAACATGGATTCTAATAATGATCTTCA
1 TTTTGTAAAGTCTAAGCTCATGCCACAAATCAGCCAAACATAAATTATAATAATGATCTTCA
* * * * *
94301 TTTTGTAAAGTCTAAGTTCGTGCCACAAATGAGCCAAACATAAATTATAGTGATGATCTT
1 TTTTGTAAAGTCTAAGCTCATGCCACAAATCAGCCAAACATAAATTATAATAATGATCTT
94361 TATTCATTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Consensus pattern (62 bp):
TTTTGTAAAGTCTAAGCTCATGCCACAAATCAGCCAAACATAAATTATAATAATGATCTTCA
Found at i:95871 original size:33 final size:33
Alignment explanation
Indices: 95828--95891 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
95818 TTACAAGCAA
95828 TGTATCGATACAAT-TCATCATGTATCGATACAT
1 TGTATCGATACAATGTCAT-ATGTATCGATACAT
* *
95861 TGTATTGATACAATGTCCTATGTATCGATAC
1 TGTATCGATACAATGTCATATGTATCGATAC
95892 GAACAGTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.89
34 3 0.11
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATGTCATATGTATCGATACAT
Found at i:95946 original size:19 final size:21
Alignment explanation
Indices: 95922--95974 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
95912 CTGCCAATTT
*
95922 CATGTATCGATACAATG-A-A
1 CATGTATCGATACAAAGCATA
95941 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAGCATA
95962 -ATGTATCGATACA
1 CATGTATCGATACA
95975 TCTGGGTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (21 bp):
CATGTATCGATACAAAGCATA
Found at i:100137 original size:21 final size:21
Alignment explanation
Indices: 100104--100153 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
100094 TTGCATGTTG
*
100104 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
100126 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
100147 AAATAAA
1 AAATAAA
100154 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:104052 original size:13 final size:13
Alignment explanation
Indices: 104034--104058 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104024 GGAAATTCAA
104034 TGTATCGATACAC
1 TGTATCGATACAC
104047 TGTATCGATACA
1 TGTATCGATACA
104059 GGGGGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:104213 original size:20 final size:19
Alignment explanation
Indices: 104172--104214 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
104162 ATCTTTTGCA
104172 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
104192 AAATGACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
104212 AAA
1 AAA
104215 ACTAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:105947 original size:39 final size:40
Alignment explanation
Indices: 105893--105983 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 40
105883 GGAGATTTTT
* * *
105893 TTTAGTAAAAGGGGAGAATGCATAAATTTGCTAAAATTA-
1 TTTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
* * *
105932 TCTTA-TTAAGGGGGAGAATGTACGAATTTGTTAAAATTAC
1 T-TTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
105972 TTTAGTTAAGGG
1 TTTAGTTAAGGG
105984 AGAAAGAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.74
40 11 0.26
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
Found at i:112735 original size:33 final size:33
Alignment explanation
Indices: 112693--112757 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
112683 TTACAAGCAA
*
112693 TGTATCGATACAAT-TCATCATGTATTGATACAT
1 TGTATCGATACAATGTCAT-ATGTATCGATACAT
*
112726 TGTATCGATACAATGTCCTATGTATCGATACA
1 TGTATCGATACAATGTCATATGTATCGATACA
112758 AACAGTAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.90
34 3 0.10
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTCATATGTATCGATACAT
Found at i:112831 original size:19 final size:20
Alignment explanation
Indices: 112787--112840 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
112777 CTGCCAATTT
**
112787 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
112807 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
112826 CATGTATCGATACAA
1 CATGTATCGATACAA
112841 AGCATAAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:114426 original size:476 final size:474
Alignment explanation
Indices: 113205--121851 Score: 8051
Period size: 476 Copynumber: 18.3 Consensus size: 474
113195 CAAACATGAA
* * * * * *
113205 TAATTCCCATTGTTTTTAGGATTAGGTACCAT-AA-ATAGTCTTCTTATTAGGATACATGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * * * *
113268 GATGCTTTAGATTCTCAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCT
66 GATGCTTTGGTTTCACAA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * *
113333 TAAAAGAGCCAAACA-AGCATTCTAGTAACGATCTTCATTTATTTTGTAATTAGGCACTATAAAT
130 CAAATGAGCCAAACATAG-ATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAAC
* *
113397 ACATTCTCCTCATTAGGATAAATGATATTGGCAATTTT-TTTTGTATG-AAATCTTTTCTTTGCC
194 ACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * *
113460 CTATTTTCCTTAAAATGAAAGCTT-ATCCCATAAGTAAGACAAGCATCGATTCTCGTAATAGTCT
259 CTATTTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCT
* * * *
113524 TTATTTTTTTCAAGATTGGGAACCAAAAATACATTCCCTTCGTTAGGATACACGACATTGATGCT
323 CTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCT
* *
113589 TTGGTGTCACAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTATCTTTTAAAT
388 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATC-TTTAAAT
113654 AAGACAAACATTAATACTCATAC
452 AAGACAAACATTAATACTCATAC
* * * * * * *
113677 TAATCCCCATTCTTTTCAGGATAAGGCATCGTACACATAGACTTCTCATTCGAATAGATGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * *
113742 GATGCTTTGGTTTTAGCAGAAAGG-TTTTTTCCCACAAATTTTTACT-AAGTCTAAGCTCGTGCC
66 GATGCTTTGGTTTCA-CAAAAAGGCTTTTTTCCCACAAATTTTT-GTAAAGTCTAAGTTCGTGCC
* *
113805 TCAAACGAGCCAAACATAAATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAAC
129 TCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAAC
* * * * *
113870 ACATTCTCATCATTAGGATAACTGATATTGGCAATTTTCTTTGGCATGAAAATCTTTTCTTCGCC
194 ACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* ** * *
113935 CTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGTGTCAATTCTCATAATAGTCTC
259 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* *
114000 TATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATACTT
324 TATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTT
* ** *
114065 CGGTGTCGCAAGAAAATTTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTATCTTATAAATA
389 TGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCTT-TAAATA
114130 AGACAAACATTAATACTCATAC
453 AGACAAACATTAATACTCATAC
* * * *
114152 TAATCCCCATTCTTGTTCAGGATAAGGCACCGTAAACATAGTATTCTCATTAGAATGCATGATAT
1 TAATCCCCATTCTT-TTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATAT
* *
114217 TGATGCTTTGGTTTCACCAAAAAGG-TTTTTTCCCACAAATTGTTGTAAAGTCTAAGCTT-ATGC
65 TGATGCTTTGGTTTCA-CAAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAG-TTCGTGC
* * * * * * *
114280 CTCAAATCAGCCAAACATCGATTCTAGTAACGATTTTCATTTTTTTTATGAATAGGCACCATAAA
128 CTCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAA
* * * * * * *
114345 TAGATTCTCCTCATTAGGATAAATGATATTGGCAATTTTCTTTTGCATGGAACTCTTTTTTTTCC
193 CACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * *
114410 CCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCT
258 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCT
* * * * * *
114475 TTATTCTTTTCGAGATTAGGAACCAAAAACACA-TCCCTTTCGTTAGGGTACACGATATTGATGC
323 CTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC-TTCATTAGGATACACGACATTGATGC
* * * * * *
114539 TTTGGTGTTGCAAGAAAAGTTTTTCTTTCTAACTTTTTTGATAGAAACAAAATTTATCTTTTAAA
387 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATC-TTTAAA
*
114604 TAAGATAAACATTAATACTCATAC
451 TAAGACAAACATTAATACTCATAC
* * * *
114628 TAATCCCCATTCTTTGCAGGATAAGGCACCGTAAACAAAGTCTTCTCATTAGAATACATGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * *
114693 GATGCTTTGGTTTCACTAGAAAGGCATTTTTCCCAAAAATTTTTGTAAAGTCTAAGTTTGTGCCA
66 GATGCTTTGGTTTCAC-AAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCC-
* * * * * * * *
114758 T-TAATGTGCGAAACATAGATTCTAGTAATGATCTTTATTCATTTTCTGATTAGG--TTGATAAA
129 TCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACT-ATAAA
* * * * * *
114820 CACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCATTTGCATGGAAATCTTTTTTTTTG
193 CACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATC-TTTTCTTTG
* * * * * * * *
114885 CCCTATCTTCCTTGAAATTAAAGTTCATCTCTTAAATAATATAAGTATCGATTCTCGA-AACTGT
257 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ATAACAGT
* * * * * * * * * *
114949 CTCCATTCTTTTCAAGATTTGGAGCCAAAAATAGATTCCCTTCATTAGGAGACAAGGCTTTGGTG
321 CTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG
* ** * ** * * *
115014 CCTTAGG-GTCGCAAGAAATTCTTTT-TATACCATTGTTTTCGATAGAATAAAAGTTTGTCTTTT
386 -CTTTGGTGTCGCAAGAAAAGCTTTTCT-TTCCAACGTTTTTGATAGAATCAAAGTTTATC-TTT
* * *
115077 AAATAACG-CAAACATTAATAGTTATAT
448 AAATAA-GACAAACATTAATACTCATAC
** * * * * * * *
115104 TAATCCCCATTCACTTCAAGATTAGGCACCATAAGCGTATTCTTCTCATAAGGATACACGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * *
115169 GAAGCTTTGGTTTCGA-AAGAAAGGTTTTTTTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTGCC
66 GATGCTTTGGTTTC-ACAA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * * *
115233 TCAAATGAGACAAACATGGATTCTAGTAATGATCATT-GTTCA-TTTGTGATTAGGCACTATAAA
129 TCAAATGAGCCAAACATAGATTCTAGTAACGATC-TTCATTTATTTTGTGATTAGGCACTATAAA
* * ** *
115296 CCCATTCCCCTCATTAGGATAAATGATATTTTTAATTTTCTTTTGTACT-AAAATCTTTTCTTTG
193 CACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCA-TGAAAATCTTTTCTTTG
* * *** * * * * *
115360 CCCTATTTTCC-AAAATATCAGAGCTT-ATCCCTTAAATAAGGTGAGGATTGATACTCGTAGCAG
257 CCCTATTTTCCTTAAA-ATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAG
* ** ** * * * ** * *
115423 TCTCCAAGCACTTCAAAGATAGTGAACCAAAAACATATTCCCTTTTTTCGGATACATGACATTGA
320 TCTCTATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGA
* * * * * * *
115488 TGCTTTGGTTTTGC-A-AAAAGCTTTTCTTTGCAACGTTGTTGACAAAATCAAAGTTTGTCTCTT
384 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCT-TT
* * ** * *
115551 AAATAAAACAACCACGAATAGTCATAA
448 AAATAAGACAAACATTAATACTCATAC
* * *
115578 TAATCCCCATTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * * * * * *
115643 GATGCTTTAGATTCACAAGAAAGGCTTTTTTCCAACCACTTTTTCTAAAGTGTAAGTTCATGCCT
66 GATGCTTTGGTTTCACAA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * * * * *
115708 TAACTAAGCTAAACATGGATTCTAGTAACGCTTTTCATTTATTTTTTGATTAGG-AGTGCTATAA
130 CAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCA---CTATAA
* * * * * *
115772 ACTCATTCTCCTCCTTAGGATAAATTATATTGGCAATTTTCTTTTGCACGAAAATCGTTTCTTTG
192 ACACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * *
115837 CCTTATTTTCCTTTAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCTTAACAGTC
257 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* * * * *
115902 GCTATTCTTATCAAGATTGGGAACCAAAAACACATTCCCTTCGA-TAGGATAGACAACATTGATA
322 TCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAGGATACACGACATTGATG
*
115966 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAAC-TTTTTGATAGAATCAAAGTTTTTCTTTTAA
386 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATC-TTTAA
*
116030 ATAAGATAAACATTAATACTCATAC
450 ATAAGACAAACATTAATACTCATAC
* * * * *
116055 TAATCCCCATTCTTTTCAGGATAAGGCACCGTAAACATAGTCTTCTTATTCGAATACATGACATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * *
116120 GATGCTTTGGTTTTAGCAAAAAGG-TTTTTTCCCACAAATATTTGTAAAGTCTAAGCTCGTGCCT
66 GATGCTTTGGTTTCA-CAAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCT
*
116184 CAAATGGGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACA
130 CAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACA
* * **
116249 CATTCTCCTCATTAGGATAAATGATATTGGCAATTTT-TTTTGGCATGGAAATCTTTTCTTCACC
195 CATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTT-GCATGAAAATCTTTTCTTTGCC
* *
116313 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGATTCTCGTAACAGTCTC
259 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* * * * * * *
116378 TATTCTTTTCAAGATTGGGAGCTAGAAACACGTTCTCTTCGTTAGGATACACAACATTGATGCTT
324 TATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTT
* * * * * *
116443 TAGTGTCGCAAGAAAAGTTTTTCTTTCCAACTTTTTTGATAGAATTAGAGTTTATGTTATAAATA
389 TGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCTT-TAAATA
*
116508 AGACAAACATTAGTACTCATAC
453 AGACAAACATTAATACTCATAC
* * * *
116530 TAATCCCCTTTCATGTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACATGATAT
1 TAATCCCCATTC-TTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATAT
* ** * ** * *
116595 TGATGCGTTGGTTTCACTTGAAAGG-TTTTTTCCCACAAACTGCTGTAAAGTCTAAGCTCATGCC
65 TGATGCTTTGGTTTCAC-AAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * *
116659 TCAAATCAGCCAAACATCGATTCTAGTAACGATCTTCATATATTTTGTGATTAGGCACCATAAAC
129 TCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAAC
* * * *
116724 ACATTCTTCTCATTAGGATAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTACC
194 ACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * *
116789 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
259 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* * * * * *
116854 TACTCTTTTCGAGATTAGGAACCAAAAACACATTCCCTTCGTTAGGATACATGATATTGATGCTT
324 TATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTT
* *
116919 TGGTAT-GCAAGAAAAGCTTTTCTTTCCAAC-TTTTTGATAGAATCAAAATTTATCTTTTAAATA
389 TGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATC-TTTAAATA
*
116982 AGATAAACATTAATACTCATAC
453 AGACAAACATTAATACTCATAC
* * * *
117004 TAATCCCCATTCTTTTCAAGATAAGGCACCGTAAACATAGTCTTCTCGTTAGAATACATGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * *
117069 GATGCTTTGGTTTCACTAAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAACTTTGTGCCA
66 GATGCTTTGGTTTCAC-AAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * * * *
117134 CAAATGTGCCGAACATAGATTCTAGT-ACTGATATTTATTCATTTTCTGATTAGGC-TTGATAAA
130 CAAATGAGCCAAACATAGATTCTAGTAAC-GATCTTCATTTATTTTGTGATTAGGCACT-ATAAA
* * * * * * *
117197 CACATTCTCCTCATTAGGATAAAAGTTAATGATAATTTCCTTTTGCGTGGAAATCATTTT-TTTG
193 CACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATC-TTTTCTTTG
* * * *
117261 CCCTATTTTCCTTGAAATCAAAGTTTATCCCTTAAATAAGATAAGCATCGATTCTCGA-AACTGT
257 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ATAACAGT
* * * * * * * * *
117325 CTCCATTCTTTTGAAGATTAGGAACCAAAAACAGA-TCCCTTCATTAGGAGACAAGGCTTTGGTG
321 CTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG
** * * * * *
117389 CCTTACG-GTCACAAGAAATTG-TTTT-TATACC-ACAGTTTTCGATAGAATAAAAGTTTATCTT
386 -CTTTGGTGTCGCAAGAAA-AGCTTTTCT-TTCCAAC-GTTTTTGATAGAATCAAAGTTTATC-T
* * * *
117450 TTAAATAACG-CCAGCATTAATAGTCATAT
446 TTAAATAA-GACAAACATTAATACTCATAC
* * * * * * * *
117479 TAATCCTCATTCACTTT-AGGATTAGGCACCATAAGCGTATTCTTCTCATAAGGATACACGATAT
1 TAATCCCCATTC-TTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATAT
* * * * * * * *
117543 TGAAGCTTTGGTTTCAAAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTTTAAGTTCATGCT
65 TGATGCTTTGGTTTCACAA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCC
** * * * * *
117608 TCAAATGAGATAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATTGGGCACCATAAAC
129 TCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAAC
* * ** * * *
117673 CCATTCTCCTTATTAGGATAAATGATATTTTTAATTTTTTTTTGTACT-AAAATCTTTTCTTTAC
194 ACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCA-TGAAAATCTTTTCTTTGC
* * * * * * * * ** *
117737 CCTATTTTTC-AAAATATCAGAGCTCATTCCTTAAATAAGACGAGTATCGATTCTCGTTGCTGTC
258 CCTATTTTCCTTAAA-ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* ** * * * * * * * *
117801 TCCAAGCATTTCAAAGATAGTGAACCAAAAACACATTCCCTTTATTAGGGTATATGATATTGATG
322 TCTATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG
* * * * * *
117866 CTTTGGTTTTGC-A-AAAAGCTTTTCTTTGCAACGTTGTTGATAAAATCAAAGTTTGTCTCTTAA
386 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCT-TTAA
* * *
117929 ATAAGACAAACATAAATAGTCAAAC
450 ATAAGACAAACATTAATACTCATAC
* * * * * * *
117954 TAATCCCAATT-TTTTGAGGATTAGGCATCATAAACACAGTCTTCTCGTTAGGATATATGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * * * *
118018 GATGCTTTAGATTCGCAAGAAAGGCTTTTTTCCAACCACTTTTTGTAAAGTCT-AGTTCGTGCCT
66 GATGCTTTGGTTTCACAA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * *
118082 TAAGTGAGCTAAACATGGATTCTAGTAACGATTTTCATTTATTTTGTGATTAGG-AGTGCTATAA
130 CAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCA---CTATAA
* * * *
118146 ACACATTCTCCTCCTTAGGATAAATGATATAGGAAATTTTCTTTTGCATGAAAATCATTTCTTTG
192 ACACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * *
118211 CCTTATTTTCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCTTAACAGTC
257 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* * * * *
118276 GCTATTTTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCGA-TAGGATACACGGCATTGATA
322 TCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAGGATACACGACATTGATG
* *
118340 CTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCAACCTTTTTGATAGAATCAAAGTTTATCTTTTAA
386 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATC-TTTAA
*
118405 ATAAGATAAACATTAATACTCATAC
450 ATAAGACAAACATTAATACTCATAC
* ** ** *
118430 TAATCCCCATTCTTTTCAGGATAAGGCACCGTAAATGTAGTCTTCTTGTTAGAATACATGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * * * *
118495 GATGCTTTGGTTTCTCCAGAAAGGCTTTTTTCCACATAAATCTTTGTAAAGTCTAAGTTTGTGAC
66 GATGCTTTGGTTTC-ACAAAAAGGCTTTTTTCC-CACAAATTTTTGTAAAGTCTAAGTTCGTGCC
** * * ** * *
118560 AAAAAT-ATGCCAAACATAGATTCTAGTAATGATCTTTATCCATTTTCTGATTAGGCACGATAAA
129 TCAAATGA-GCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAA
* * * * *
118624 CACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGGAAATCTTTTCTTTGT
193 CACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * *
118689 CCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGA-AACTGT-
258 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ATAACAGTC
* * * * * * * * *
118752 TTTCATTCTTTTCAAGATAGGGAAGCAAAACCAGATTCCCTTCATTAGGAGATAGGACATTGGTG
322 TCT-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG
* * * *
118817 CTTTAGG-GTCGCAAGAAATTG-TTTTCATTTCACAA--TTTTCGATAGAATAAAAGTTTGTCTC
386 CTTT-GGTGTCGCAAGAAA-AGCTTTTC-TTTC-CAACGTTTTTGATAGAATCAAAGTTTATCT-
* *
118878 TCAAATAAGGCAAACATTAATAGC-CATAC
446 TTAAATAAGACAAACATTAATA-CTCATAC
* * * * * * * * * *
118907 TAATCCACATTCATTTCAAGATTAGGCCCCAAAAACGTAGTTTTCTCATAAGGATACACGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * * * *
118972 GATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCC-CTTAATTTTTGTAAGGTTTAAATTCGTGT
66 GATGCTTTGGTTTC-ACAA-AAAGGCTTTTTTCCCAC-AAATTTTTGTAAAGTCTAAGTTCGTGC
* * * *
119035 CTCAAATGAGCCAAACATGGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
128 CTCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAA
* * * ** * * **
119100 CACCTTCTCTTCATTAGGATGAATGATAAAGATAATTTGCTTTTGCATGAAAATC-TTTCTTTAT
193 CACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * * * *
119164 CCTATTTTCCATGAAATAAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAACAGTCT
258 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCT
* * * * * * * * *
119229 CCATTCTTTTTAAGATAGGGAACCAAAACCAGATTCCCTTCATTAGGAGATAAGACATTGGTGCT
323 CTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCT
* * * * *
119294 TTAGG-GTCGTAA-AAAATTCTTTTCATTT-TATA-GTTTTCGATAGAATAAAAGTTT-TCCTCT
388 TT-GGTGTCGCAAGAAAA-GCTTTTC-TTTCCA-ACGTTTTTGATAGAATCAAAGTTTAT-CT-T
*
119354 TAAATAAGGCAAACATTAATAGC-CATAC
447 TAAATAAGACAAACATTAATA-CTCATAC
* * * * * * * * *
119382 TAATCCACATTCATTTCAAGATTAGGCCACAAT-AACGTAGTTTTCTCATAAGGATACACGATAT
1 TAATCCCCATTCTTTTCAGGATAAGG-CACCATAAACATAGTCTTCTCATTAGGATACATGATAT
* * * * * * * *
119446 TGATGCTTTGGTTTCAAAAGAAAAGCTTTCTACCCCCTAATTTTTGTAAAGTCTAAATTCGCGCC
65 TGATGCTTTGGTTTCACAA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCC
** * * * *
119511 TCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAAC
129 TCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAAC
* * ** * * * * **
119576 ACCTTCTCTTCATTAGGACGAATGATAATGATTATTTCCTTTTGCATGAAAATCTTTTCTTTATC
194 ACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * * *
119641 CTCTTTTCCTTCAAATAAAAGTTCATCGCTTAAATAAGATAAACATCGATTCTCGA-AACAGTCT
259 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ATAACAGTCT
* * * * * * *
119705 CTATTCTTTTCAAGATAGGGAACC-AAAACTAGATTCCCTTCATTAGGAGATAAGACATTGGTGT
323 CTATTCTTTTCAAGATTGGGAACCAAAAAC-ACATTCCCTTCATTAGGATACACGACATTGATGC
** *
119769 TTTAGG-GTCGCAAGAAATTCTTTTCATTT-C-ACAGTTTTTGATAGAAT-AGAAGTTTGTCTCT
387 TTT-GGTGTCGCAAGAAAAGCTTTTC-TTTCCAAC-GTTTTTGATAGAATCA-AAGTTTATCT-T
* * *
119830 CAAAGAAGGCAAACATTAATAGC-CATAC
447 TAAATAAGACAAACATTAATA-CTCATAC
* * * * * * * * *
119858 TAATCCACATTCATTTCAAGATTAGGCCACAAT-AACGTAGTTTTCTCATAAGGATACACGATAT
1 TAATCCCCATTCTTTTCAGGATAAGG-CACCATAAACATAGTCTTCTCATTAGGATACATGATAT
* * *
119922 TGATGCTTTGGTTTCGA-AAGAAAGG-TTTTCTTCCC-CTTAATTTTTGTAAGGTCTAAATTCGT
65 TGATGCTTTGGTTTC-ACAA-AAAGGCTTTT-TTCCCAC-AAATTTTTGTAAAGTCTAAGTTCGT
* * * * * * * *
119984 GTCTCAAATAAGCTAAACATGGATCCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTA
126 GCCTCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATA
* * * *
120049 AACACCTTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAAAATCTTTTCTTT
191 AACACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTT
** * * * *
120114 ATCCTATTTTCCTTGAAATAAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAACAGT
256 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGT
* * * * * * * * * *
120179 CTCCATTCTTTTCAAGGTAGGGAACCAAAACCAGATTCCATTTCATTAGGAGATAAGACATTGGT
321 CTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCC-CTTCATTAGGATACACGACATTGAT
** * * * * * *
120244 GCTTTAGG-GTCATAAAAAAATCTTTTCATTT-TATA-GTTTTCGATAGAATAAAAGTTTGTCTC
385 GCTTT-GGTGTCGCAAGAAAAGCTTTTC-TTTCCA-ACGTTTTTGATAGAATCAAAGTTTATCT-
* * *
120306 TTAAATAAGGCAAAGATTGATAGC-CATAC
446 TTAAATAAGACAAACATTAATA-CTCATAC
* * * *
120335 TAAT--CCA------T-A-AATAAGG---C--AAACGTAGTCTTCTCATAAGGATACACGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * *
120385 GATGCTTTGGTTTCGA-AAGAAAAGCTTTTCTACCCGCTAATTTTTGTAAAGTCTAAGTTCGTGC
66 GATGCTTTGGTTTC-ACAA-AAAGGCTTTT-TTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGC
** * * * *
120449 CTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACTATAAA
128 CTCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTAT-AA
* * ** * * ** * *
120514 ACCCACTCTCCTTGTTAGGGTAAATGATGTTTTTTATTTTCTTTTGTATGAAAATC---T-TTTG
192 ACACATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * *
120575 -----------------T-----TT-A-CCCTTAAAT-AGATAAGCATCAATTCTCATAGCAGTC
257 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* * * * * * *
120615 TCCAATCTTTACAAAG-TTAGTGAACCAAAAACACATTCCCTTCTTTAGGATACATGGCATTGAT
322 TCTATTCTTTTC-AAGATT-GGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGAT
* * * * *
120679 GCTTTGGTGTCAC-A-AAATGCTTTTCTTTGCAACGTTTTTGATAAAATCAAAGCTTATCTCTTA
385 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCT-TTA
*
120742 AATAAGACAAAC-TTGAATAGTCATAC
449 AATAAGACAAACATT-AATACTCATAC
* * * * * * *
120768 TAATCCCCATTGTTTT-AGGATTATGTACCACAAACACAGTCTTCTCATTAGGATACAAGATATT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * * * * * * *
120832 GATGCTTTAGATTCGCAAGAAAGGCTTTTTTCCAACCAATTTTTGAAAAGTCTAAATTCCTACCT
66 GATGCTTTGGTTTCACAA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * *
120897 TAAATGAGCCAAACATGGATTCTAGTAACGATATTCTTTTATTTTGTGATTAGGCACTATAAACA
130 CAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACA
* * * *
120962 CATTCTCCTAAATAGGATAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
195 CATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* *
121027 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCT
260 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCT
* ** * * *
121092 ATTTTTTTGGAGATTGGGAACCAAAAACACATTCCCTTCGTTAGGATACACGATATTGATGCCTT
325 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTT
** * *
121157 GGTACCGCAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAATTTATCTTTAAATAAG
390 GGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCTTTAAATAAG
*
121222 ATAAACATTAATACTC-TAC
455 ACAAACATTAATACTCATAC
* * * **
121241 TAATCCCCATTCTTTTCAAGATGAGGCACCGTAAACATAGT-TTCTTGTT-GGAATACATGATAT
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGG-ATACATGATAT
* * *
121304 TGATGCTTTGGTCTCACTAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTTGTGCC
65 TGATGCTTTGGTTTCAC-AAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCC
* * ** * ** * * * *
121369 ACAATTGTCCCAAACATAGATTCTACTAATAATCTTTATTCATTTTCTGATTAGGC-TTGATAAA
129 TCAAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACT-ATAAA
* * ** * * *
121433 CATATACTCCTCATTAGGATAAAAAAATAATGATAA-TTTCTTTTTGCATGAAAATCTTTTTTTT
193 CACATTCTCCTCATTAGGAT-AAATGATATTGGTAATTTTC-TTTTGCATGAAAATCTTTTCTTT
* * *
121497 GCCCTATTTTTCCTTAAAATC-AAGTTCGTCCCTTAAATAAGATAAGCATCGATTCTCGA-AACT
256 GCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ATAACA
* * * * * * * * *
121560 GTCTCCATTCTTTTCAAGATTAGGAACCAAAAATAGATTCCCTTCATTAGGAGACAAGGCTTTGG
319 GTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGA
* * * ** * * * * * *
121625 TGCCTTAGG-GTCGTAAGACATTCCTTTATGT-C-ACTGTTTTCGATAAGAATAAAAGTTTGTCT
384 TG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAAC-GTTTTTGAT-AGAATCAAAGTTTATC-
* *
121687 TTTAAATAACG-CAAACATTAATAGTCATAT
445 TTTAAATAA-GACAAACATTAATACTCATAC
** ** * * * *
121717 TAATCATCA-TCACTTCAGGATTAGGCACCA-AAAGCGTATTCTTCTCATAAGGATAACATGATA
1 TAATCCCCATTCTTTTCAGGATAAGGCACCATAAA-CATAGTCTTCTCATTAGGAT-ACATGATA
* * * **
121780 TTGAGGCTTTGGTTTTGA-AAGAAAGGC---TTTCCCCCCTATTTTTGTTAAAGTCTAAGTTCGT
64 TTGATGCTTTGG-TTTCACAA-AAAGGCTTTTTTCCCACAAATTTTTG-TAAAGTCTAAGTTCGT
121841 GCCTCAAATGA
126 GCCTCAAATGA
Statistics
Matches: 6818, Mismatches: 1131, Indels: 449
0.81 0.13 0.05
Matches are distributed among these distances:
432 6 0.00
433 57 0.01
434 3 0.00
435 65 0.01
436 29 0.00
437 1 0.00
438 2 0.00
441 2 0.00
442 4 0.00
443 1 0.00
445 46 0.01
446 80 0.01
447 53 0.01
448 1 0.00
449 4 0.00
460 3 0.00
461 1 0.00
462 54 0.01
463 88 0.01
464 46 0.01
466 1 0.00
467 5 0.00
468 1 0.00
469 1 0.00
471 2 0.00
472 32 0.00
473 512 0.08
474 1132 0.17
475 1560 0.23
476 2124 0.31
477 793 0.12
478 54 0.01
479 54 0.01
480 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
TAATCCCCATTCTTTTCAGGATAAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
GATGCTTTGGTTTCACAAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTC
AAATGAGCCAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACAC
ATTCTCCTCATTAGGATAAATGATATTGGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTA
TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTG
GTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCTTTAAATAAGA
CAAACATTAATACTCATAC
Found at i:115133 original size:951 final size:947
Alignment explanation
Indices: 113222--121851 Score: 8153
Period size: 951 Copynumber: 9.1 Consensus size: 947
113212 CATTGTTTTT
* * * * *
113222 AGGATTAGGTACCAT-AA-ATAGTCTTCTTATTAGGATACATGATATTGATGCTTTAGATTCTCA
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACA
* * * * * *
113285 AGAAAGGCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAAAGAGCCAAACAAG
66 AGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATG
* * *
113350 CATTCTAGTAACGATCTTCATTTATTTTGTAATTAGGCACTATAAATACATTCTCCTCATTAGGA
131 GATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* *
113415 TAAATGATATTGGCAATTTT-TTTTGTAT-GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATGA
196 TAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * * *
113478 AAGCTT-ATCCCATAAGTAAGACAAGCATCGATTCTCGTAATAGTCTTTATTTTTTTCAAGATTG
261 AAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTA
* *
113542 GGAACCAAAAATACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAG
325 GGAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
113607 CTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTATCTTTTAAATAAGACAAACATTAATACT
390 TTTTTCTTTCCAACGTTTTTGATAGAAACAAAGTTTATCTTTTAAATAAGACAAACATTAATACT
* * * * *
113672 CATACTAATCCCCATTCTTTTCAGGATAAGGCATCGTACACATAGACTTCTCATTCGAATAGATG
455 CATACTAATCCCCATTC-TTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACATG
* * * *
113737 ATATTGATGCTTTGGTTTTAGC-AGAAAGGTTTTTTCCCACAAATTTTTACT-AAGTCTAAGCTC
519 ATATTGATGCTTTGGTTTCA-CAAGAAAGGCTTTTTCCCACAAATTTTT-GTAAAGTCTAAGTTC
* * * * *
113800 GTGCCTCAAACGAGCCAAACATAAATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACT-
582 GTGCCT-AAATGAGCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCA-TG
* * * ** * *
113864 ATAAACACATTCTCATCATTAGGATAACTGATATTGGCAATTTTCTTTGGCATGAAAATCTTTTC
645 ATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAAAATCTTTTC
* * * ** *
113929 TTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGTGTCAATTCTC-ATAA
710 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGA-AA
* * * * * *
113993 -TAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCGTTAGGATACACGACAT
774 CT-GTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGAGACAAGGCAT
* * * * *
114057 TGATACTTCGGTGTCGCAAGAAAATT-TTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTATC
838 TGATGCTTAGG-GTCGCAAG-AAATTCTTTTCTTTCC-ACTGTTTTGATAGAATAAAAGTTTGTC
* * *
114121 TTATAAATAAGACAAACATTAATACTCATACTAATCCCCATTCTTGTTC
900 TTTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCAT-TTC
* * * * *
114170 AGGATAAGGCACCGTAAACATAGTATTCTCATTAGAATGCATGATATTGATGCTTTGGTTTCACC
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCA-C
* * *
114235 AA-AAAGG-TTTTTTCCCACAAATTGTTGTAAAGTCTAAGCTT-ATGCCTCAAATCAGCCAAACA
65 AAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGCCAAACA
* * * * * * * *
114297 TCGATTCTAGTAACGATTTTCATTTTTTTTATGAATAGGCACCATAAATAGATTCTCCTCATTAG
129 TGGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* * *
114362 GATAAATGATATTGGCAATTTTCTTTTGCATGGAACTCTTTTTTTTCCCCTATTTTCCTTAAAAT
194 GATAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
114427 GAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTTTATTCTTTTCGAGATT
259 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATT
* * *
114492 AGGAACCAAAAACACA-TCCCTTTCGTTAGGGTACACGATATTGATGCTTTGGTGTTGCAAGAAA
324 AGGAACCAAAAACACATTCCC-TTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAA
* * * *
114556 AGTTTTTCTTTCTAACTTTTTTGATAGAAACAAAATTTATCTTTTAAATAAGATAAACATTAATA
388 AGTTTTTCTTTCCAACGTTTTTGATAGAAACAAAGTTTATCTTTTAAATAAGACAAACATTAATA
*
114621 CTCATACTAATCCCCATTCTTTGCAGGATAAGGCACCGTAAACAAAGTCTTCTCATTAGAATACA
453 CTCATACTAATCCCCATTCTTT-CAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACA
* *
114686 TGATATTGATGCTTTGGTTTCACTAGAAAGGCATTTTTCCCAAAAATTTTTGTAAAGTCTAAGTT
517 TGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACAAATTTTTGTAAAGTCTAAGTT
* * * * * *
114751 TGTGCCATTAATGTGCGAAACATAGATTCTAGTAATGATCTTTATTCATTTTCTGATTAGG-TTG
581 CGTGCC-TAAATGAGCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCATG
* *
114815 ATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCATTTGCATGGAAATCTTTTT
645 ATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAAAATC-TTTT
* * * * * * *
114880 TTTTGCCCTATCTTCCTTGAAATTAAAGTTCATCTCTTAAATAATATAAGTATCGATTCTCGAAA
709 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGAAA
* * * * *
114945 CTGTCTCCATTCTTTTCAAGATTTGGAGCCAAAAATAGATTCCCTTCATTAGGAGACAAGGCTTT
774 CTGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGAGACAAGGCATT
* * *
115010 GGTGCCTTAGGGTCGCAAGAAATTCTTTT-TATACCATTGTTTTCGATAGAATAAAAGTTTGTCT
839 GATG-CTTAGGGTCGCAAGAAATTCTTTTCT-TTCCACTGTTTT-GATAGAATAAAAGTTTGTCT
* * *
115074 TTTAAATAACG-CAAACATTAATAGTTATATTAATCCCCATTCACTTC
901 TTTAAATAA-GACAAACATTAATAGTCATACTAATCCCCATTCATTTC
* * * * * * *
115121 AAGATTAGGCACCATAAGCGTATTCTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTCGA-
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTC-AC
* * * *
115185 AAGAAAGGTTTTTTTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
65 AAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAT
* * * * *
115250 GGATTCTAGTAATGATCATT-GTTCA-TTTGTGATTAGGCACTATAAACCCATTCCCCTCATTAG
130 GGATTCTAGTAACGATC-TTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
*** * * *
115313 GATAAATGATATTTTTAATTTTCTTTTGTACT-AAAATCTTTTCTTTGCCCTATTTTCC-AAAAT
194 GATAAATGATATTGGCAATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA-
* *** * * * * * ** **
115376 ATCAGAGCTT-ATCCCTTAAATAAGGTGAGGATTGATACTCGTAGCAGTCTCCAAGCACTTCAAA
257 ATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTC-AA
* ** * * * *
115440 GA-TAGTGAACCAAAAACATATTCCCTTTTTTCGGATACATGACATTGATGCTTTGGTTTTGC-A
320 GATTAG-GAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * * * * * * *
115503 -AAAAGCTTTTCTTTGCAACGTTGTTGACA-AAATCAAAGTTTGTCTCTTAAATAAAACAACCAC
384 GAAAAGTTTTTCTTTCCAACGTTTTTGATAGAAA-CAAAGTTTATCTTTTAAATAAGACAAACAT
* * * * * * * *
115566 GAATAGTCATAATAATCCCCATTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
448 TAATACTCATACTAATCCCCA-TTCTTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGA
* * * * * * *
115631 ATACATGATATTGATGCTTTAGATTCACAAGAAAGGCTTTTTTCCAACCACTTTTTCTAAAGTGT
512 ATACATGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACAAATTTTTGTAAAGTCT
* * * * * * * * *
115696 AAGTTCATGCCTTAACTAAGCTAAACATGGATTCTAGTAACGCT-TTTCATTTATTTTTTGATTA
576 AAGTTCGTGCC-TAAATGAGCCAAACATAGATTCTAGTAATGATCTTT-ATTCATTTTGTGATTA
* * * * ** * *
115760 GG-AGTGCTATAAACTCATTCTCCTCCTTAGGATAAATTATATTGGCAATTTTCTTTTGCACGAA
639 GGCA-TG--ATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAA
* * * * *
115824 AATCGTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGAT
701 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGAT
** * * * * *
115889 TCTCTTAACAGTCGCTATTCTTATCAAGATTGGGAACCAAAAACACATTCCCTTCGA-TAGGATA
766 TCTCGAAACTGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTC-ATTAGG--A
* * ** *
115953 GACAA--CATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACT-TTTTGATAGAATCA
828 GACAAGGCATTGATGCTTAGG-GTCGCAAGAAATTCTTTTCTTTCC-ACTGTTTTGATAGAATAA
* * * *
116015 AAGTTTTTCTTTTAAATAAGATAAACATTAATACTCATACTAATCCCCATTCTTTTC
891 AAGTTTGTCTTTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCATTTC
* * * * * * *
116072 AGGATAAGGCACCGTAAACATAGTCTTCTTATTCGAATACATGACATTGATGCTTTGGTTTTAGC
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCA-C
* * *
116137 AA-AAAGG-TTTTTTCCCACAAATATTTGTAAAGTCTAAGCTCGTGCCTCAAATGGGCCAAACAT
65 AAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAT
*
116200 AGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
130 GGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
**
116265 ATAAATGATATTGGCAATTTT-TTTTGGCATGGAAATCTTTTCTTCACCCTATTTTCCTTAAAAT
195 ATAAATGATATTGGCAATTTTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
116329 CAAAGTTCATCCCTTAAATAAGACAAGTATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATT
259 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATT
* * * * * * * *
116394 GGGAGCTAGAAACACGTTCTCTTCGTTAGGATACACAACATTGATGCTTTAGTGTCGCAAGAAAA
324 AGGAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAA
* ** * * * *
116459 GTTTTTCTTTCCAACTTTTTTGATAGAATTAGAGTTTATGTTATAAATAAGACAAACATTAGTAC
389 GTTTTTCTTTCCAACGTTTTTGATAGAAACAAAGTTTATCTTTTAAATAAGACAAACATTAATAC
*
116524 TCATACTAATCCCCTTTCATGTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACA
454 TCATACTAATCCCCATTC-T-TTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACA
* ** * * ** *
116589 TGATATTGATGCGTTGGTTTCACTTGAAAGGTTTTTTCCCACAAACTGCTGTAAAGTCTAAGCTC
517 TGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTC
* * * * * **
116654 ATGCCTCAAATCAGCCAAACATCGATTCTAGTAACGATCTTCATAT-ATTTTGTGATTAGGCACC
582 GTGCCT-AAATGAGCCAAACATAGATTCTAGTAATGATCTTTAT-TCATTTTGTGATTAGGCATG
* * ** * *
116718 ATAAACACATTCTTCTCATTAGGATAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTC
645 ATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAAAATCTTTTC
* * * *
116783 TTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAAC
710 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGAAAC
** * * * * * * **
116848 AATCTCTACTCTTTTCGAGATTAGGAACCAAAAACACATTCCCTTCGTTAGGATACATGATATTG
775 TGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGAGACAAGGCATTG
* * ** *
116913 ATGCTT-TGGTATGCAAGAAAAGCTTTTCTTTCCAACT-TTTTGATAGAATCAAAA-TTTATCTT
840 ATGCTTAGGGT-CGCAAGAAATTCTTTTCTTTCC-ACTGTTTTGATAGAAT-AAAAGTTTGTCTT
* * *
116975 TTAAATAAGATAAACATTAATACTCATACTAATCCCCATTCTTTTC
902 TTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCATTTC
* * * * *
117021 AAGATAAGGCACCGTAAACATAGTCTTCTCGTTAGAATACATGATATTGATGCTTTGGTTTCACT
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCAC-
* * * * *
117086 AA-AAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAACTTTGTGCCACAAATGTGCCGAACAT
65 AAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAT
* * * * * *
117150 AGATTCTAGT-ACTGATATTTATTCATTTTCTGATTAGGC-TTGATAAACACATTCTCCTCATTA
130 GGATTCTAGTAAC-GATCTTCATTTATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTA
* * * ** * * *
117213 GGATAAAAGTTAATGATAATTTCCTTTTGCGTGGAAATCATTTT-TTTGCCCTATTTTCCTTGAA
193 GGATAAATGATATTGGCAATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAA
* * * * * *
117277 ATCAAAGTTTATCCCTTAAATAAGATAAGCATCGATTCTCGAAACTGTCTCCATTCTTTTGAAGA
257 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGA
* * * * * * * ** *
117342 TTAGGAACCAAAAACAGA-TCCCTTCATTAGGAGACAAGGCTTTGGTGCCTTACG-GTCACAAGA
322 TTAGGAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATG-CTTTGGTGTCGCAAGA
* * * * * *
117405 AATTGTTTTT-ATACC-ACAGTTTTCGATAGAATA-AAAGTTTATCTTTTAAATAACG-CCAGCA
386 AA-AGTTTTTCTTTCCAAC-GTTTTTGATAGAA-ACAAAGTTTATCTTTTAAATAA-GACAAACA
* * * * * * * * *
117466 TTAATAGTCATATTAATCCTCATTCACTTT-AGGATTAGGCACCATAAGCGTATTCTTCTCATAA
447 TTAATACTCATACTAATCCCCATT--CTTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTA
* * * * * *
117530 GGATACACGATATTGAAGCTTTGGTTTCAAAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGT
510 GAATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCACAAATTTTTGTAAAGT
* * * **
117595 TTAAGTTCATGCTTCAAATGAGATAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATT
574 CTAAGTTCGTGCCT-AAATGAGCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* ** * * * ** ** *
117660 GGGCACCATAAACCCATTCTCCTTATTAGGATAAATGATATTTTTAATTTTTTTTTGTACT-AAA
638 AGGCATGATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCA-TGAAA
* * * * * * ** *
117724 ATCTTTTCTTTACCCTATTTTTC-AAAATATCAGAGCTCATTCCTTAAATAAGACGAGTATCGAT
702 ATCTTTTCTTTGCCCTATTTTCCTTAAA-ATCAAAGTTCATCCCTTAAATAAGATAAGCATCGAT
*** ** * *
117788 TCTCGTTGCTGTCTCCAAGCATTTCAAAGA-TAGTGAACCAAAAACACATTCCCTTTATTAGG-G
766 TCTCGAAACTGTCTCCATTCTTTTC-AAGATTAG-GAACCAAAAACACATTCCCTTCATTAGGAG
* * ** * * * * * * *
117851 TATATGATATTGATGCTTTGGTTTTGCAA-AAA-GCTTTTCTTTGCAAC-GTTGTTGATAAAATC
829 -ACAAGGCATTGATGCTTAGG-GTCGCAAGAAATTCTTTTCTTT-CCACTGTT-TTGATAGAATA
* * * * * *
117913 AAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCAAACTAATCCCAATT-TTTTG
890 AAAGTTTGTCTTTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCATTTC
* * * * * * *
117970 AGGATTAGGCATCATAAACACAGTCTTCTCGTTAGGATATATGATATTGATGCTTTAGATTCGCA
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACA
* * * * * *
118035 AGAAAGGCTTTTTTCCAACCACTTTTTGTAAAGTCT-AGTTCGTGCCTTAAGTGAGCTAAACATG
66 AGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATG
* *
118099 GATTCTAGTAACGATTTTCATTTATTTTGTGATTAGG-AGTGCTATAAACACATTCTCCTCCTTA
131 GATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCA---CTATAAACACATTCTCCTCATTA
* * * * * *
118163 GGATAAATGATATAGGAAATTTTCTTTTGCATGAAAATCATTTCTTTGCCTTATTTTCCTTTAAA
193 GGATAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * *
118228 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCTTAACAGTCGCTATTTTTTTCAAGAT
258 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGAT
* * * * * *
118293 TGGGAACCAAAAACACATTTCCTTCGATAGGATACACGGCATTGATACTTTGGTGTCGTAAGAAA
323 TAGGAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAA
* * * *
118358 AGCTTTTCTTTCCAACCTTTTTGATAGAATCAAAGTTTATCTTTTAAATAAGATAAACATTAATA
388 AGTTTTTCTTTCCAACGTTTTTGATAGAAACAAAGTTTATCTTTTAAATAAGACAAACATTAATA
** **
118423 CTCATACTAATCCCCATTCTTTTCAGGATAAGGCACCGTAAATGTAGTCTTCTTGTTAGAATACA
453 CTCATACTAATCCCCATTC-TTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACA
* * * *
118488 TGATATTGATGCTTTGGTTTCTCCAGAAAGGCTTTTTTCCACATAAATCTTTGTAAAGTCTAAGT
517 TGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCC-CACAAATTTTTGTAAAGTCTAAGT
* ** * *
118553 TTGTGACAAAAAT-ATGCCAAACATAGATTCTAGTAATGATCTTTATCCATTTTCTGATTAGGCA
580 TCGTG-CCTAAATGA-GCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCA
* *
118617 CGATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGGAAATCTTT
643 TGATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAAAATCTTT
* *
118682 TCTTTGTCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGAA
708 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGAA
* * * * * *
118747 ACTGTTTTCATTCTTTTCAAGA-TAGGGAAGCAAAACCAGATTCCCTTCATTAGGAGA-TAGGAC
773 ACTGTCTCCATTCTTTTCAAGATTA-GGAACCAAAAACACATTCCCTTCATTAGGAGACAAGG-C
* * * *
118810 ATTGGTGCTTTAGGGTCGCAAGAAATTGTTTTCATTTCACAAT-TTTCGATAGAATAAAAGTTTG
836 ATTGATGC-TTAGGGTCGCAAGAAATTCTTTTC-TTTC-CACTGTTTTGATAGAATAAAAGTTTG
* * * * *
118874 TCTCTCAAATAAGGCAAACATTAATAGCCATACTAATCCACATTCATTTC
898 TCTTTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCATTTC
* * * * * * *
118924 AAGATTAGGCCCCAAAAACGTAGTTTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGA-
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTC-AC
* * * * * *
118988 AAGAAAGGCTTTCTTCCC-CTTAATTTTTGTAAGGTTTAAATTCGTGTCTCAAATGAGCCAAACA
65 AAGAAAGGCTTTTTTCCCAC-AAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA
* * * * *
119052 TGGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACCTTCTCTTCATTAG
129 TGGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* ** ** * * ** * *
119117 GATGAATGATAAAGATAATTTGCTTTTGCATGAAAATC-TTTCTTTATCCTATTTTCCATGAAAT
194 GATAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** * *
119181 AAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAACAGTCTCCATTCTTTTTAAGA-T
259 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATT
* * * * * * * *
119245 AGGGAACCAAAACCAGATTCCCTTCATTAGGAGATAAGACATTGGTGCTTTAGG-GTCGTAA-AA
324 A-GGAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTT-GGTGTCGCAAGAA
* * * * *
119308 AATTCTTTTCATTT-TATA-GTTTTCGATAGAATA-AAAGTTT-TCCTCTTAAATAAGGCAAACA
387 AAGT-TTTTC-TTTCCA-ACGTTTTTGATAGAA-ACAAAGTTTAT-CTTTTAAATAAGACAAACA
* * * ** * * *
119369 TTAATAGC-CATACTAATCCACATTCATTTCAAGATTAGGCCACAAT-AACGTAGTTTTCTCATA
447 TTAATA-CTCATACTAATCCCCATTC-TTTCAGGATAAGG-CACCGTAAACATAGTCTTCTCATT
* * * * * * *
119432 AGGATACACGATATTGATGCTTTGGTTTCAAAAGAAAAGCTTTCTACCCCCTAATTTTTGTAAAG
509 AGAATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCACAAATTTTTGTAAAG
* * ** * *
119497 TCTAAATTCGCGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
573 TCTAAGTTCGTGCCT-AAATGAGCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGAT
* * ** *
119562 TAGGCACTG-TAAACACCTTCTCTTCATTAGGACGAATGATAATGATTATTTCCTTTTGCATGAA
637 TAGGCA-TGATAAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAA
** * * * * *
119626 AATCTTTTCTTTATCCTCTTTTCCTTCAAATAAAAGTTCATCGCTTAAATAAGATAAACATCGAT
701 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGAT
* * *
119691 TCTCGAAACAGTCTCTATTCTTTTCAAGA-TAGGGAACC-AAAACTAGATTCCCTTCATTAGGAG
766 TCTCGAAACTGTCTCCATTCTTTTCAAGATTA-GGAACCAAAAAC-ACATTCCCTTCATTAGGAG
* * * * * *
119754 ATAAGACATTGGTGTTTTAGGGTCGCAAGAAATTCTTTTCATTT-CACAGTTTTTGATAGAATAG
829 ACAAGGCATTGATG-CTTAGGGTCGCAAGAAATTCTTTTC-TTTCCACTG-TTTTGATAGAATAA
* * * * * *
119818 AAGTTTGTCTCTCAAAGAAGGCAAACATTAATAGCCATACTAATCCACATTCATTTC
891 AAGTTTGTCTTTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCATTTC
* * * * * *
119875 AAGATTAGGCCACAAT-AACGTAGTTTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGA
1 AGGATTAGG-CACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTC-A
* * * * * *
119939 -AAGAAAGG-TTTTCTTCCC-CTTAATTTTTGTAAGGTCTAAATTCGTGTCTCAAATAAGCTAAA
64 CAAGAAAGGCTTTT-TTCCCAC-AAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAA
* * * * *
120001 CATGGATCCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACCTTCTCCTCATT
127 CATGGATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* ** * * ** *
120066 AGGATAAATGATAATGATAATTTCCTTTTGCATGAAAATCTTTTCTTTATCCTATTTTCCTTGAA
192 AGGATAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * ** *
120131 ATAAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAACAGTCTCCATTCTTTTCAAG-
257 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGA
* * * * * * * * * **
120195 GTAGGGAACCAAAACCAGATTCCATTTCATTAGGAGATAAGACATTGGTGCTTTAGG-GTCATAA
322 TTA-GGAACCAAAAACACATTCC-CTTCGTTAGGATACACGACATTGATGCTTT-GGTGTCGCAA
* * * * * *
120259 -AAAAATCTTTTCATTT-TATA-GTTTTCGATAGAATA-AAAGTTTGTCTCTTAAATAAGGCAAA
384 GAAAAGT-TTTTC-TTTCCA-ACGTTTTTGATAGAA-ACAAAGTTTATCTTTTAAATAAGACAAA
* * * * *
120320 GATTGATAGC-CATACTAAT--CCA-----T-A-AATAAGG---C--AAACGTAGTCTTCTCATA
445 CATTAATA-CTCATACTAATCCCCATTCTTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATT
* * * * *
120370 AGGATACACGATATTGATGCTTTGGTTTCGA-AAGAAAAGCTTTTCTACCCGCTAATTTTTGTAA
509 AGAATACATGATATTGATGCTTTGGTTTC-ACAAGAAAGGCTTTT-T-CCCACAAATTTTTGTAA
** * * *
120434 AGTCTAAGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTTTG
571 AGTCTAAGTTCGTGCCT-AAATGAGCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTG
* * ** * ** ** * * *
120499 ATTAGGCACT-ATAAAACCCACTCTCCTTGTTAGGGTAAATGATGTTTTTTATTTTCTTTTGTAT
635 ATTAGGCA-TGAT-AAACACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCAT
120563 GAAAATC---T-TTTG-----------------T-----TT-A-CCCTTAAAT-AGATAAGCATC
698 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATC
* * * * * *
120599 AATTCTC-ATAGCAGTCTCCAATCTTTACAA-AGTTAGTGAACCAAAAACACATTCCCTTCTTTA
763 GATTCTCGA-AACTGTCTCCATTCTTTTCAAGA-TTAG-GAACCAAAAACACATTCCCTTCATTA
* * * * * * *
120662 GGATACATGGCATTGATGCTTTGGTGTCAC-A-AAATGCTTTTCTTTGCAAC-GTTTTTGATAAA
825 GGAGACAAGGCATTGATGCTTAGG-GTCGCAAGAAATTCTTTTCTTT-CCACTG-TTTTGATAGA
* * * * * *
120724 ATCAAAGCTTATCTCTTAAATAAGACAAAC-TTGAATAGTCATACTAATCCCCATT-GTTTT
887 ATAAAAGTTTGTCTTTTAAATAAGACAAACATT-AATAGTCATACTAATCCCCATTCATTTC
* * * * * * * *
120784 AGGATTATGTACCACAAACACAGTCTTCTCATTAGGATACAAGATATTGATGCTTTAGATTCGCA
1 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACA
* * * * * * *
120849 AGAAAGGCTTTTTTCCAACCAATTTTTGAAAAGTCTAAATTCCTACCTTAAATGAGCCAAACATG
66 AGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATG
* * * *
120914 GATTCTAGTAACGATATTCTTTTATTTTGTGATTAGGCACTATAAACACATTCTCCTAAATAGGA
131 GATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
120979 TAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
196 TAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * ** *
121044 AAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCTATTTTTTTGGAGATTGG
261 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTAG
* * ** *
121109 GAACCAAAAACACATTCCCTTCGTTAGGATACACGATATTGATGCCTTGGTACCGCAAGAAAAGC
326 GAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGT
* * * *
121174 TTTTCTTTCCAACTTTTTTGATAGAATCAAAATTTATC-TTTAAATAAGATAAACATTAATACTC
391 TTTTCTTTCCAACGTTTTTGATAGAAACAAAGTTTATCTTTTAAATAAGACAAACATTAATACTC
* * ** *
121238 -TACTAATCCCCATTCTTTTCAAGATGAGGCACCGTAAACATAGT-TTCTTGTTGGAATACATGA
456 ATACTAATCCCCATTC-TTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACATGA
* * *
121301 TATTGATGCTTTGGTCTCACTAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTTGT
520 TATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGT
** * * * *
121366 GCC-ACAATTGTCCCAAACATAGATTCTACTAATAATCTTTATTCATTTTCTGATTAGGCTTGAT
584 GCCTA-AA-TGAGCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCATGAT
* * ** * *
121430 AAACATATACTCCTCATTAGGATAAAAAAATAATGATAATTTCTTTTTGCATGAAAATCTTTTTT
647 AAACACATTCTCCTCATTAGGAT-AAATGATAATGATAATTTCCTTTTGCATGAAAATCTTTTCT
*
121495 TTGCCCTATTTTTCCTTAAAATC-AAGTTCGTCCCTTAAATAAGATAAGCATCGATTCTCGAAAC
711 TTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGAAAC
* * *
121559 TGTCTCCATTCTTTTCAAGATTAGGAACCAAAAATAGATTCCCTTCATTAGGAGACAAGGCTTTG
775 TGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGAGACAAGGCATTG
* * * * * *
121624 GTGCCTTAGGGTCGTAAGACATTCCTTTATGT-CACTGTTTTCGATAAGAATAAAAGTTTGTCTT
840 ATG-CTTAGGGTCGCAAGAAATTCTTTTCTTTCCACTGTTTT-GAT-AGAATAAAAGTTTGTCTT
* ** *
121688 TTAAATAACG-CAAACATTAATAGTCATATTAATCATCA-TCACTTC
902 TTAAATAA-GACAAACATTAATAGTCATACTAATCCCCATTCATTTC
* * * * *
121733 AGGATTAGGCACCA-AAAGCGTATTCTTCTCATAAGGATAACATGATATTGAGGCTTTGGTTTTG
1 AGGATTAGGCACCATAAA-CATAGTCTTCTCATTAGGAT-ACATGATATTGATGCTTTGG-TTTC
* **
121797 A-AAGAAAGGC---TTTCCCCCCTATTTTTGTTAAAGTCTAAGTTCGTGCCTCAAATGA
63 ACAAGAAAGGCTTTTTTCCCACAAATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAATGA
Statistics
Matches: 6344, Mismatches: 1093, Indels: 490
0.80 0.14 0.06
Matches are distributed among these distances:
906 8 0.00
907 25 0.00
908 56 0.01
909 288 0.05
910 72 0.01
911 41 0.01
912 45 0.01
913 6 0.00
914 3 0.00
915 1 0.00
916 5 0.00
917 1 0.00
918 19 0.00
919 103 0.02
920 38 0.01
921 12 0.00
922 1 0.00
923 4 0.00
936 3 0.00
937 2 0.00
938 57 0.01
939 90 0.01
940 43 0.01
941 1 0.00
943 5 0.00
944 1 0.00
945 3 0.00
947 69 0.01
948 212 0.03
949 771 0.12
950 1082 0.17
951 1554 0.24
952 1190 0.19
953 382 0.06
954 94 0.01
955 56 0.01
956 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (947 bp):
AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACA
AGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATG
GATTCTAGTAACGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
TAAATGATATTGGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTAG
GAACCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGT
TTTTCTTTCCAACGTTTTTGATAGAAACAAAGTTTATCTTTTAAATAAGACAAACATTAATACTC
ATACTAATCCCCATTCTTTCAGGATAAGGCACCGTAAACATAGTCTTCTCATTAGAATACATGAT
ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGC
CTAAATGAGCCAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCATGATAAAC
ACATTCTCCTCATTAGGATAAATGATAATGATAATTTCCTTTTGCATGAAAATCTTTTCTTTGCC
CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGAAACTGTCTC
CATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGAGACAAGGCATTGATGCTT
AGGGTCGCAAGAAATTCTTTTCTTTCCACTGTTTTGATAGAATAAAAGTTTGTCTTTTAAATAAG
ACAAACATTAATAGTCATACTAATCCCCATTCATTTC
Done.