Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2374
Parameters: 2 7 7 80 10 50 1000
Length:  50759

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1562--1607
22
2.0
22
87
8
65
63
0
0
36
0.95
1629--1683
27
2.1
26
83
10
67
49
0
5
45
1.25
4618--4649
2
16.0
2
100
0
64
50
50
0
0
1.00
5037--5092
29
2.0
28
85
3
76
57
7
3
32
1.43
5204--5243
3
13.3
3
100
0
80
65
0
0
35
0.93
7854--7888
2
17.5
2
100
0
70
51
0
48
0
1.00
9439--9734
108
2.7
110
85
2
364
20
32
10
36
1.86
10427--10469
22
2.0
21
86
13
61
51
0
0
48
1.00
10557--10598
21
2.0
21
86
13
61
40
0
0
59
0.97
11080--11138
16
3.6
16
75
4
64
62
1
1
33
1.15
11005--11233
115
2.0
114
92
2
379
53
2
3
41
1.30
11065--11218
33
5.4
27
65
23
84
54
1
1
41
1.22
11983--12020
6
6.5
6
84
6
51
81
0
5
13
0.85
13769--13798
10
2.8
11
95
5
53
33
10
0
56
1.32
14582--14674
41
2.3
41
80
12
102
53
0
1
45
1.07
15078--15121
21
2.1
21
86
0
61
43
4
0
52
1.22
15763--15797
2
17.5
2
100
0
70
51
0
0
48
1.00
16254--16310
28
2.0
28
96
0
105
61
1
0
36
1.07
16900--16933
14
2.4
14
90
9
52
52
0
0
47
1.00
18943--18967
2
12.5
2
100
0
50
48
0
52
0
1.00
22123--22159
4
8.8
4
88
11
56
48
21
2
27
1.63
22157--22184
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22665--22715
27
2.0
27
85
11
72
45
0
0
54
0.99
22673--22725
21
2.6
19
80
16
61
39
0
0
60
0.97
28917--28969
27
2.0
27
85
7
72
60
0
1
37
1.08
29237--29297
15
4.4
14
72
13
54
55
0
0
44
0.99
29310--29354
22
2.1
21
83
4
54
64
2
4
28
1.25
29667--29899
122
1.9
123
84
2
317
35
6
5
51
1.52
30523--30562
2
20.0
2
100
0
80
50
0
0
50
1.00
32188--32218
2
15.5
2
93
0
53
48
3
0
48
1.17
33082--33123
21
2.0
21
90
4
68
47
0
2
50
1.14
33132--33177
13
3.1
15
81
15
60
69
0
0
30
0.89
33585--33684
47
2.1
46
85
3
128
41
2
3
54
1.27
33647--33688
20
2.2
19
91
4
66
42
0
0
57
0.99
36260--36300
21
2.0
21
90
0
64
56
7
9
26
1.58
37128--37157
2
15.0
2
100
0
60
50
0
0
50
1.00
36973--37324
167
2.1
168
97
0
661
36
10
13
39
1.79
37295--37346
2
26.0
2
100
0
104
50
0
0
50
1.00
37128--37514
189
2.0
189
97
0
729
37
9
12
40
1.76
37484--37514
2
15.5
2
100
0
62
48
0
0
51
1.00
37764--37788
3
8.3
3
100
0
50
32
0
0
68
0.90
38719--38828
38
3.0
37
74
19
106
49
1
0
49
1.11
39982--40007
2
13.0
2
100
0
52
50
0
0
50
1.00
40398--40433
2
18.0
2
100
0
72
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41852--41891
2
20.0
2
100
0
80
50
0
50
0
1.00
42856--42897
2
21.0
2
100
0
84
50
0
0
50
1.00
44210--44312
16
6.4
16
74
4
91
36
2
3
56
1.33
44208--44312
32
3.3
31
77
5
111
37
2
3
56
1.32
44268--44312
22
2.0
22
83
8
56
40
0
0
60
0.97
44362--44411
22
2.2
23
82
13
59
42
2
2
54
1.23
45921--45951
2
15.5
2
100
0
62
51
0
0
48
1.00
46677--46718
22
1.9
22
90
0
66
52
7
4
35
1.50
47384--47466
36
2.3
36
81
6
89
45
2
3
48
1.33
47661--47799
16
8.4
16
76
12
129
57
1
0
41
1.07
47668--47796
31
3.9
31
76
16
125
58
1
0
39
1.07
47641--47791
69
2.2
69
87
5
209
55
1
1
41
1.19
47661--47764
53
1.9
55
84
3
140
56
1
0
41
1.10

Tables:   1

The End!