genome.fa.s2378.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2378
Parameters: 2 7 7 80 10 50 1000
Length:  108952

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4603--4658	20	2.8	19	89	5	76	39	14	16	30	1.88
4728--4753	13	2.0	13	100	0	52	38	15	15	30	1.88
4710--4774	32	2.0	34	90	6	107	44	15	12	27	1.82
6964--7013	21	2.3	21	80	10	57	56	4	18	22	1.58
8808--8838	15	2.1	15	93	0	53	48	16	22	12	1.80
10919--10956	13	2.9	13	96	0	67	34	18	15	31	1.92
11068--11113	21	2.2	20	81	11	58	32	19	4	43	1.71
12783--12879	47	2.1	47	100	0	194	37	6	22	34	1.79
13414--13469	20	2.8	19	89	5	76	39	14	16	30	1.88
13539--13564	13	2.0	13	100	0	52	38	15	15	30	1.88
13521--13585	32	2.0	34	90	6	107	44	15	12	27	1.82
15208--15262	21	2.6	21	85	5	67	41	18	5	34	1.73
17555--17631	21	3.7	21	85	3	102	36	12	15	35	1.86
17667--17734	19	3.9	19	78	21	85	35	11	14	38	1.83
17688--17712	13	1.9	13	100	0	50	36	16	16	32	1.90
17669--17731	32	2.0	32	96	0	117	34	12	15	36	1.86
20149--20274	51	2.4	50	81	7	144	33	23	11	31	1.91
20261--20361	28	3.6	28	92	4	152	22	30	21	24	1.99
20344--20518	52	3.3	52	81	3	217	28	28	12	30	1.93
20449--20719	79	3.4	79	77	3	276	26	28	14	30	1.95
33094--33167	7	10.4	7	74	17	55	83	6	9	0	0.80
33093--33142	12	4.5	11	85	10	66	86	10	4	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34160--34555	55	7.0	55	85	8	449	26	28	20	23	1.99
35350--35417	19	3.9	19	74	21	76	36	11	13	38	1.81
35352--35414	32	2.0	32	93	0	108	36	12	14	36	1.84
35457--35482	13	2.0	13	100	0	52	30	15	15	38	1.88
35438--35503	33	2.0	33	87	0	96	25	15	16	42	1.87
37848--38185	52	6.4	50	69	16	164	30	25	12	31	1.92
37957--38032	27	2.8	28	90	6	111	23	32	21	22	1.98
38015--38189	52	3.3	52	82	3	217	29	26	12	31	1.92
37843--38295	212	2.1	211	90	2	703	28	27	13	30	1.94
38198--38402	79	2.6	79	82	3	243	23	30	17	28	1.97
40771--40843	20	3.4	21	76	12	69	43	17	10	27	1.83
40813--40863	20	2.5	21	84	6	61	39	21	11	27	1.88
41365--41415	19	2.6	20	81	3	59	29	17	13	39	1.88
43086--43127	12	3.5	12	90	0	66	40	0	28	30	1.57
43095--43129	3	11.7	3	93	0	61	37	0	31	31	1.58
49284--49331	10	5.2	9	79	20	55	18	4	12	64	1.43
49631--49672	21	1.9	23	85	9	61	45	0	23	30	1.53
50152--50191	21	1.9	21	85	10	55	47	5	7	40	1.54
50293--50356	33	2.0	32	87	3	92	28	15	14	42	1.86
52443--52661	58	3.8	58	77	6	194	47	14	11	26	1.78
52615--52707	45	2.1	45	84	8	118	45	12	11	30	1.78
52953--52982	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56974--57006	11	3.3	10	91	8	50	54	3	0	42	1.15
57001--57038	17	2.1	19	85	9	53	44	5	5	44	1.49
65310--65355	19	2.4	19	100	0	92	41	15	21	21	1.90
66350--66377	13	2.2	13	100	0	56	39	17	14	28	1.89
66418--66484	33	2.0	33	88	0	98	40	14	11	32	1.83
66440--66464	13	1.9	13	100	0	50	32	16	16	36	1.90
67213--67237	13	1.9	13	100	0	50	36	16	16	32	1.90
67309--67333	13	1.9	13	100	0	50	32	16	16	36	1.90
69849--69886	18	2.2	18	85	4	51	44	2	0	52	1.14
70642--70719	39	2.0	39	100	0	156	28	23	5	43	1.75
75706--75783	41	1.9	41	83	0	102	34	17	15	32	1.92
76576--76632	21	2.7	21	83	0	69	38	15	8	36	1.79
85625--85676	19	2.7	20	88	11	81	30	15	15	38	1.88
88218--88255	13	2.9	13	96	0	67	31	15	18	34	1.92
90326--90356	15	2.1	15	93	0	53	12	22	16	48	1.80
94425--94450	13	2.0	13	100	0	52	30	15	15	38	1.88
94405--94468	32	2.0	33	90	9	105	29	15	15	39	1.89
95784--95809	13	2.0	13	100	0	52	30	15	15	38	1.88
95764--95827	32	2.0	33	90	9	105	29	15	15	39	1.89
99191--99216	3	8.7	3	100	0	52	34	30	0	34	1.58
99399--99478	40	2.0	40	97	0	151	27	11	21	40	1.87
102180--102212	15	2.1	16	88	5	50	27	3	0	69	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102365--102401	15	2.4	17	86	13	53	13	18	0	67	1.23
103725--103881	79	2.0	79	93	0	269	33	26	10	29	1.90
107329--107404	25	3.0	25	76	18	77	40	0	0	59	0.98
107336--107420	38	2.2	38	78	21	88	40	0	0	60	0.97

Tables:   1

The End!