Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2379
Parameters: 2 7 7 80 10 50 1000
Length:  32268

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72--111
2
20.5
2
94
5
73
50
0
50
0
1.00
773--827
16
3.5
16
78
12
60
34
0
0
65
0.93
1157--1251
20
4.9
20
72
20
78
51
0
0
48
1.00
1293--1321
2
15.0
2
92
7
51
48
0
0
51
1.00
1494--1528
15
2.2
16
90
5
54
42
0
2
54
1.15
1569--1608
21
1.9
21
90
10
64
60
0
0
40
0.97
1935--1965
3
10.3
3
100
0
62
32
0
0
67
0.91
2462--2509
13
3.7
13
88
8
55
64
0
0
35
0.94
2472--2508
13
2.8
13
100
0
74
62
0
0
37
0.96
2744--2781
17
2.3
16
90
4
58
42
5
0
52
1.24
3190--3219
14
2.2
14
94
5
53
70
0
3
26
1.03
3780--3812
14
2.4
14
85
5
50
48
0
3
48
1.17
3781--3810
13
2.3
13
94
0
51
46
0
3
50
1.18
4002--4039
3
12.7
3
100
0
76
68
0
31
0
0.90
6112--6145
2
17.0
2
100
0
68
50
0
0
50
1.00
10905--10943
13
2.7
14
85
14
53
69
5
2
23
1.21
11113--11142
2
15.5
2
93
6
53
50
0
0
50
1.00
12274--12321
19
2.4
21
82
10
64
60
4
4
31
1.35
14910--14938
3
9.7
3
100
0
58
0
31
0
68
0.89
17518--17560
22
2.0
22
95
0
77
11
23
18
46
1.82
18505--18535
13
2.4
13
94
0
53
29
6
6
58
1.48
18726--18820
11
9.0
11
71
20
69
69
1
1
28
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18725--18820
20
4.6
21
78
12
99
68
1
1
29
1.03
18726--18820
31
3.0
32
74
11
97
69
1
1
28
1.02
18864--18926
32
1.9
33
87
3
92
52
3
1
42
1.27
18926--18965
20
2.1
19
86
9
55
55
2
0
42
1.13
18920--18970
20
2.6
19
75
22
52
54
1
1
41
1.22
18874--18980
46
2.2
46
80
14
119
54
2
1
41
1.26
19875--19902
2
14.0
2
100
0
56
50
0
0
50
1.00
20102--20183
32
2.6
32
82
7
87
41
1
0
57
1.06
20159--20200
17
2.4
18
88
4
59
30
4
0
64
1.14
20583--20622
19
2.1
19
86
9
55
50
0
0
50
1.00
23260--23303
14
3.3
13
84
15
63
68
2
2
27
1.14
23461--23496
2
18.5
2
94
5
65
50
0
0
50
1.00
24353--24398
20
2.4
19
85
7
58
47
10
0
41
1.38
24897--24929
16
1.9
18
88
11
52
63
6
6
24
1.40
29853--29895
22
2.0
22
95
0
77
11
23
18
46
1.82
30078--30185
54
2.0
54
98
0
207
30
24
18
26
1.98
30766--30806
21
2.0
20
86
9
57
36
4
4
53
1.44
31178--31243
18
3.6
18
79
18
57
65
1
1
31
1.11
31341--31398
17
3.5
17
75
15
50
46
5
1
46
1.35
32095--32126
15
2.1
15
94
0
55
84
0
0
15
0.63

Tables:   1

The End!