Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold238
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1453955
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 5 of 9
Found at i:669070 original size:21 final size:21
Alignment explanation
Indices: 669041--669085 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
669031 CAGTTTTTAT
*
669041 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
669061 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
669083 TTT
1 TTT
669086 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:671323 original size:13 final size:13
Alignment explanation
Indices: 671305--671330 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
671295 AATTTTTTTG
671305 TGTATCGATACAT
1 TGTATCGATACAT
671318 TGTATCGATACAT
1 TGTATCGATACAT
671331 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:671453 original size:20 final size:20
Alignment explanation
Indices: 671400--671455 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
671390 ACATCTTTTT
* *
671400 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGAAA
671420 CATGTATCGATACTTTGAAA
1 CATGTATCGATACTTTGAAA
**
671440 TGTGTATCGATACTTT
1 CATGTATCGATACTTT
671456 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACTTTGAAA
Found at i:671759 original size:15 final size:17
Alignment explanation
Indices: 671713--671762 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 17
671703 AGAACCTAAC
671713 AGAAAGAAAGAAGATGAAGA
1 AGAAAGAAAGAA-A--AAGA
671733 AGAAAGAAAGAAAAAGA
1 AGAAAGAAAGAAAAAGA
671750 A-AAA-AAAGAAAAA
1 AGAAAGAAAGAAAAA
671763 ACATATGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.30
16 3 0.10
17 5 0.17
19 1 0.03
20 12 0.40
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (17 bp):
AGAAAGAAAGAAAAAGA
Found at i:679274 original size:28 final size:28
Alignment explanation
Indices: 679200--679876 Score: 684
Period size: 27 Copynumber: 24.6 Consensus size: 28
679190 AGTAGCATTT
*
679200 CTTTTCAAAGTCCACAACTCCGTGCCATC
1 CTTTT-AAAGTCCACAACTCCGTGGCATC
*
679229 CTTTT-AAGTCCATAACTCCGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
*
679256 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679284 CTTTTAAAGTCCATAACTTCGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679312 CTTTT-AAGTCTACAACTCCATGGCA-C
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679338 CTTTTAAAGTCCACAACTTCGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679366 CTTTTAAAGTCCACAACTCCGTGACACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679394 CTTTT-AAGTCCACAACTCCATGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679421 CTTTT-AAGTCCATAACTCCGTGGCATT
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * *
679448 CTTTTAAAGTCCACCACTCCTTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679476 CTTTT-AAGTCCATAACTCGGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679503 CTTTT-AAGTCCACAACTCCATGGCATT
1 CTTTTAAAGTCCACAACTCCGTGGCATC
*
679530 CTTTTAAAGTCCACAACTCTGTGGCAT-
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* ** *
679557 CTTTTTAAGTCCACAACTTTGTAGCA-C
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * *
679584 CCTTTAAAGTCCACAACTCCTTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
*
679612 CTTTT-AAGTCCACAACTCCGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
*
679639 CTTTT-AAGTCCATAACTCCGTGGCA-C
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679665 TCTTTTAAAGTCCACCACTCCGT-GCACC
1 -CTTTTAAAGTCCACAACTCCGTGGCATC
* *
679693 CTTTT-AAGTCCATAACTCTGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * * *
679720 CTTTT-AAGTCCATAATTCTGTGGCATA
1 CTTTTAAAGTCCACAACTCCGTGGCATC
*
679747 CTTTT-AAGTTCACAACTCCGTGGCAGTACC
1 CTTTTAAAGTCCACAACTCCGTGGCA-T--C
* * **
679777 CTTTTAAAGCCCACAAGTTAGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * * *
679805 ATTTTAAAGCCCACAAGTCAGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * * * *
679833 CTTTCAAAGCCCATAAGTCAGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * *
679861 ATTTCAAAGCCCACAA
1 CTTTTAAAGTCCACAA
679877 GTTGGTGGCA
Statistics
Matches: 558, Mismatches: 75, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.04
27 302 0.54
28 210 0.38
29 5 0.01
30 6 0.01
31 15 0.03
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (28 bp):
CTTTTAAAGTCCACAACTCCGTGGCATC
Found at i:679370 original size:82 final size:83
Alignment explanation
Indices: 679200--679841 Score: 735
Period size: 82 Copynumber: 7.8 Consensus size: 83
679190 AGTAGCATTT
*
679200 CTTTTCAAAGTCCACAACTCCGTGCCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAG
1 CTTTT-AAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAG
679265 TCCACAACTCCGTGGCACC
65 TCCACAACTCCGTGGCACC
* * * * *
679284 CTTTTAAAGTCCATAACTTCGTGGCATCCTTTTAAGTCTACAACTCCATGGCA-CCTTTTAAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAGT
*
679348 CCACAACTTCGTGGCACC
66 CCACAACTCCGTGGCACC
* * * * *
679366 CTTTTAAAGTCCACAACTCCGTGACACCCTTTTAAGTCCACAACTCCATGGCACCCTTTT-AAGT
1 CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAGT
* **
679430 CCATAACTCCGTGGCATT
66 CCACAACTCCGTGGCACC
* * * *
679448 CTTTTAAAGTCCACCACTCCTTGGCACCCTTTTAAGTCCATAACTCGGTGGCATCCTTTT-AAGT
1 CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAGT
* **
679512 CCACAACTCCATGGCATT
66 CCACAACTCCGTGGCACC
* * * ** * *
679530 CTTTTAAAGTCCACAACTCTGTGGCATCTTTTTAAGTCCACAACTTTGTAGCA-CCCTTTAAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAGT
*
679594 CCACAACTCCTTGGCACC
66 CCACAACTCCGTGGCACC
*
679612 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCCGTGGCA-CTCTTTTAAAG
1 CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATC-CTTTTAAAG
*
679675 TCCACCACTCCGT-GCACC
65 TCCACAACTCCGTGGCACC
* * * * *
679693 CTTTT-AAGTCCATAACTCTGTGGCATCCTTTTAAGTCCATAATTCTGTGGCATACTTTT-AAGT
1 CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAGT
*
679756 TCACAACTCCGTGGCAGTACC
66 CCACAACTCCGTGGC---ACC
* * ** * * * * * *
679777 CTTTTAAAGCCCACAAGTTAGTGGCATCATTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAG
1 CTTTTAAAGTCCACAACTCCGTGGCATCCTTTT-AAGTCCATAACTCCGTGGCATCCTTTTAAAG
679842 CCCATAAGTC
Statistics
Matches: 479, Mismatches: 68, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
80 14 0.03
81 105 0.22
82 254 0.53
83 48 0.10
84 13 0.03
85 21 0.04
86 21 0.04
87 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.31
Consensus pattern (83 bp):
CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTGGCATCCTTTTAAAGT
CCACAACTCCGTGGCACC
Found at i:679878 original size:28 final size:28
Alignment explanation
Indices: 679782--680583 Score: 595
Period size: 28 Copynumber: 27.4 Consensus size: 28
679772 GTACCCTTTT
* *
679782 AAAGCCCACAAGTTAGTGGCATCATTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
679810 AAAGCCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
679838 AAAGCCCATAAGTCAGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
**
679866 AAAGCCCACAAGTTGGTGGCAACTCATTTC
1 AAAGCCCACAAGTCAGTGGC-A-TCATTTC
* *
679896 AAAGCCCACACAAGTCGGTGGCAACTCATTTG
1 AAAG-CC-CACAAGTCAGTGGC-A-TCATTTC
* *
679928 AAAGCCTACACAAGTCGGTGGCAACCCATTTC
1 AAAGCC--CACAAGTCAGTGGC-A-TCATTTC
*
679960 AAAGCCCACAAGTCAGTGGCATCTTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
679988 AAAGCCCACAAGTCAGTGGCAACTCATTTC
1 AAAGCCCACAAGTCAGTGGC-A-TCATTTC
**
680018 AAAGCCCACACAAGTTGGTGGCAACTCATTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-TCATTTC
** *
680050 AAAGCCTACACAAGTTGGTGGCAACCTATTTC
1 AAAGCC--CACAAGTCAGTGGC-ATC-ATTTC
* * *
680082 AAACCCACACAAGTCGGTGGCAACCCATTTC
1 AAAGCC-CACAAGTCAGTGGC-A-TCATTTC
* * *
680113 AAAGCTCACAAGTAAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * *
680141 AAAGCCCACAAGTCTA-TGGCACCCTTTT
1 AAAGCCCACAAGTC-AGTGGCATCATTTC
* ** * * * *
680169 AAAACCCGTAAGTTAGTGGCACCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * * * *
680197 AAAACCCACAAGTTAGTGGTACCATTCC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * * *
680225 AAAGCCCAAAAGTTAGTGGCACCATTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
680253 AAAGCCCACAAGTCAGTGGCATACCCTTTC
1 AAAGCCCACAAGTCAGTGGCAT--CATTTC
* *
680283 AAAGCCCACAAATCAGTGGCA-CATTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * * *
680310 AAAACCCACAAATCAGTGGCACCTTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * *
680338 AAAACCCATAAGAT-AGTGGCATCTTTTC
1 AAAGCCCACAAG-TCAGTGGCATCATTTC
* * *
680366 AAAGCCCACAAGTTAGTGTCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
680394 AAAAGCCCACAAGTCAGTGGCATCCTTTTC
1 -AAAGCCCACAAGTCAGTGGCAT-CATTTC
* **
680424 AAAGCCCACAAGTCAATGGCATTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
680452 AAAGCCCACAAGTCAATGGCATCTTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* **
680480 AAAGCCCACACAAGTCGGTGGCAACTTTTTTCTC
1 AAAG-CC-CACAAGTCAGTGGC-A--TCATT-TC
* * *
680514 AAAGCCTACAAGTTAGTGACA-CACTTTC
1 AAAGCCCACAAGTCAGTGGCATCA-TTTC
** *
680542 AAAGCCCACACAAGTTGGTGGCAACTCTTTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-TCATTTC
680574 AAAGCCCACA
1 AAAGCCCACA
680584 TAAGTTAGTG
Statistics
Matches: 658, Mismatches: 83, Indels: 64
0.82 0.10 0.08
Matches are distributed among these distances:
27 26 0.04
28 297 0.45
29 53 0.08
30 102 0.16
31 39 0.06
32 128 0.19
33 7 0.01
34 6 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCATCATTTC
Found at i:679966 original size:122 final size:115
Alignment explanation
Indices: 679782--680596 Score: 655
Period size: 122 Copynumber: 6.9 Consensus size: 115
679772 GTACCCTTTT
** * *
679782 AAAGCCCACAAGTTAGTGGC-A-TCATTTTAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCC
1 AAAGCCCACAAGTCGGTGGCAACTCATTTCAAAGCCCACAAGTCAGTGGCACCCATTTCAAAGCC
* * *
679844 CATAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTGGTGGCAACTCATTTC
66 CACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTGGC-A-TCATTTC
* *
679896 AAAGCCCACACAAGTCGGTGGCAACTCATTTGAAAGCCTACACAAGTCGGTGGCAACCCATTTCA
1 AAAG-CC-CACAAGTCGGTGGCAACTCATTTCAAAGCC--CACAAGTCAGTGGC-ACCCATTTCA
* * *
679961 AAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAACTCATTTC
61 AAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTGGC-A-TCATTTC
* ** *
680018 AAAGCCCACACAAGTTGGTGGCAACTCATTTCAAAGCCTACACAAGTTGGTGGCAACCTATTTCA
1 AAAG-CC-CACAAGTCGGTGGCAACTCATTTCAAAGCC--CACAAGTCAGTGGC-ACCCATTTCA
* * * * *
680083 AACCCACACAAGTCGGTGGCAACCCATTTCAAAGCTCACAAGTAAGTGGCATCCTTTC
61 AAGCC-CACAAGTCAGTGGC-A-CCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
** * * * ** * * *
680141 AAAGCCCACAAGTCTATGGC-AC-CCTTTTAAAACCCGTAAGTTAGTGGCACCC-TTTTAAAACC
1 AAAGCCCACAAGTCGGTGGCAACTCATTTCAAAGCCCACAAGTCAGTGGCACCCATTTCAAAGCC
* * * * * *
680203 CACAAGTTAGTGGTACCATTCCAAAGCCCAAAAGTTAGTGGCACCATTTT
66 CACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* * * * *
680253 AAAGCCCACAAGTCAGTGGCATAC-CCTTTCAAAGCCCACAAATCAGTGGCA--CATTTTAAAAC
1 AAAGCCCACAAGTCGGTGGCA-ACTCATTTCAAAGCCCACAAGTCAGTGGCACCCATTTCAAAGC
* * * * * *
680315 CCACAAATCAGTGGCACCTTTTCAAAACCCATAAGATAGTGGCATCTTTTC
65 CCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
** * * * *
680366 AAAGCCCACAAGTTAGTGTC-A-TCCTTTCAAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGC
1 AAAGCCCACAAGTCGGTGGCAACTCATTTC-AAAGCCCACAAGTCAGTGGCACCCATTTCAAAGC
* *** * * *
680429 CCACAAGTCAATGGCATTTTTTCAAAGCCCACAAGTCAATGGCATCTTTTC
65 CCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
** * * * *
680480 AAAGCCCACACAAGTCGGTGGCAACTTTTTTCTCAAAGCCTACAAGTTAGTGACACAC-TTTCAA
1 AAAG-CC-CACAAGTCGGTGGCAAC-TCATT-TCAAAGCCCACAAGTCAGTGGCACCCATTTCAA
** *
680544 AGCCCACACAAGTTGGTGGCAACTCTTTTCAAAGCCCACATAAGTTAGTGGCA
62 AG-CC-CACAAGTCAGTGGC-AC-CATTTCAAAGCCCAC--AAGTTAGTGGCA
680597 CCTTTTTTTT
Statistics
Matches: 578, Mismatches: 93, Indels: 50
0.80 0.13 0.07
Matches are distributed among these distances:
111 7 0.01
112 67 0.12
113 68 0.12
114 92 0.16
115 12 0.02
116 26 0.04
117 13 0.02
118 20 0.03
119 33 0.06
120 28 0.05
121 15 0.03
122 139 0.24
123 23 0.04
124 12 0.02
125 23 0.04
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (115 bp):
AAAGCCCACAAGTCGGTGGCAACTCATTTCAAAGCCCACAAGTCAGTGGCACCCATTTCAAAGCC
CACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
Found at i:685013 original size:33 final size:30
Alignment explanation
Indices: 684938--685020 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 30
684928 TTCCCTTTCT
*
684938 AAAA-AAAAGAATGAAAAAAAAAGTCAAAAG
1 AAAAGAAAA-AATGAAAAAAAAAATCAAAAG
684968 AAAAGAACAAAATGAAAAAAAAAATGC-AAAG
1 AAAAGAA-AAAATGAAAAAAAAAAT-CAAAAG
684999 CAAAATAGAAAAAATGAAAAAA
1 --AAA-AGAAAAAATGAAAAAA
685021 GCAAAGCAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
30 4 0.09
31 20 0.43
32 3 0.07
33 15 0.33
34 4 0.09
ACGTcount: A:0.76, C:0.05, G:0.12, T:0.07
Consensus pattern (30 bp):
AAAAGAAAAAATGAAAAAAAAAATCAAAAG
Found at i:685038 original size:34 final size:31
Alignment explanation
Indices: 684942--685047 Score: 92
Period size: 32 Copynumber: 3.2 Consensus size: 31
684932 CTTTCTAAAA
684942 AAAAGAATGAAAAAAAAAGTCAAAAG-AAA-AG
1 AAAA-AATGAAAAAAAAAG-CAAAAGAAAATAG
684973 AACAAAATGAAAAAAAAAATGC-AAAGCAAAATAG
1 AA-AAAATG-AAAAAAAAA-GCAAAAG-AAAATAG
685007 AAAAAATGAAAAAAGCAAAGCAAAAGTAAAATCAAG
1 AAAAAATGAAAAAA--AAAGCAAAAG-AAAAT--AG
685043 AAAAA
1 AAAAA
685048 GAGAATAAAA
Statistics
Matches: 63, Mismatches: 1, Indels: 17
0.78 0.01 0.21
Matches are distributed among these distances:
31 10 0.16
32 18 0.29
33 12 0.19
34 16 0.25
36 7 0.11
ACGTcount: A:0.73, C:0.07, G:0.13, T:0.08
Consensus pattern (31 bp):
AAAAAATGAAAAAAAAAGCAAAAGAAAATAG
Found at i:688509 original size:41 final size:42
Alignment explanation
Indices: 688452--688540 Score: 153
Period size: 41 Copynumber: 2.1 Consensus size: 42
688442 AGATTAAGTA
*
688452 AGAAAATTACTTAACCAAGCTTTTTTTCGTCT-AAAAAAAGG
1 AGAAAATTACCTAACCAAGCTTTTTTTCGTCTAAAAAAAAGG
*
688493 AGAAAATTACCTAACCAAGCTTTTTTTCTTCTAAAAAAAAGG
1 AGAAAATTACCTAACCAAGCTTTTTTTCGTCTAAAAAAAAGG
688535 AGAAAA
1 AGAAAA
688541 AAGTTCTAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 30 0.67
42 15 0.33
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (42 bp):
AGAAAATTACCTAACCAAGCTTTTTTTCGTCTAAAAAAAAGG
Found at i:691610 original size:22 final size:22
Alignment explanation
Indices: 691582--691635 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
691572 TTAGGTGGTA
*
691582 TGTTAGGTGAACATATTAGGTG
1 TGTTAGGTGAACATATTAAGTG
*
691604 TGTTAGGTGAGCATATTAAGTG
1 TGTTAGGTGAACATATTAAGTG
691626 TGTTAGGTGA
1 TGTTAGGTGA
691636 TGTGTTAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.26, C:0.04, G:0.33, T:0.37
Consensus pattern (22 bp):
TGTTAGGTGAACATATTAAGTG
Found at i:692167 original size:32 final size:32
Alignment explanation
Indices: 692094--692186 Score: 89
Period size: 32 Copynumber: 2.9 Consensus size: 32
692084 CCATGTTTAG
* * * * *
692094 ATTACCGGTTTCACCCAAGTCTTCAATTTCAA
1 ATTACTGGTTTCGCCTAGGTCTTTAATTTCAA
* * *
692126 ATTATTGGTTTTGCTTAGGTCTTTAATTTCATA
1 ATTACTGGTTTCGCCTAGGTCTTTAATTTCA-A
*
692159 A-TACTGGTTTCGCCTAGGTTTTTAATTT
1 ATTACTGGTTTCGCCTAGGTCTTTAATTT
692187 TAGACTATTG
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
32 46 0.96
33 2 0.04
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (32 bp):
ATTACTGGTTTCGCCTAGGTCTTTAATTTCAA
Found at i:692319 original size:32 final size:32
Alignment explanation
Indices: 692294--692359 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 32
692284 GGTCTTTAGT
*
692294 TTCAAACTACTAGTTTTGCCCAGGTCCTTAAG
1 TTCAAACTACTAGTTATGCCCAGGTCCTTAAG
* * * * *
692326 TTCAAGCTATTAGTTATGCCTAAGTCCTCAAG
1 TTCAAACTACTAGTTATGCCCAGGTCCTTAAG
692358 TT
1 TT
692360 TAGGCTATTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (32 bp):
TTCAAACTACTAGTTATGCCCAGGTCCTTAAG
Found at i:693279 original size:23 final size:24
Alignment explanation
Indices: 693244--693292 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
693234 TGATCTATGT
*
693244 GCTTATTCGATTTATTTAT-TTGG
1 GCTTATTCGATTTAATTATGTTGG
**
693267 GCTTATTTTATTTAATTATGTTGG
1 GCTTATTCGATTTAATTATGTTGG
693291 GC
1 GC
693293 CAATTTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.18, C:0.08, G:0.18, T:0.55
Consensus pattern (24 bp):
GCTTATTCGATTTAATTATGTTGG
Found at i:693298 original size:24 final size:23
Alignment explanation
Indices: 693253--693300 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
693243 TGCTTATTCG
* **
693253 ATTTATTTATTTGGGCTTATTTT
1 ATTTAATTATTTGGGCCAATTTT
693276 ATTTAATTATGTTGGGCCAATTTT
1 ATTTAATTAT-TTGGGCCAATTTT
693300 A
1 A
693301 CAAATAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.23, C:0.06, G:0.15, T:0.56
Consensus pattern (23 bp):
ATTTAATTATTTGGGCCAATTTT
Found at i:695148 original size:17 final size:17
Alignment explanation
Indices: 695126--695159 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
695116 CAAGTCTGAT
*
695126 TTAAAAAATTATTTTTC
1 TTAAAAAATGATTTTTC
695143 TTAAAAAATGATTTTTC
1 TTAAAAAATGATTTTTC
695160 AAGATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50
Consensus pattern (17 bp):
TTAAAAAATGATTTTTC
Found at i:696546 original size:13 final size:13
Alignment explanation
Indices: 696528--696553 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
696518 TACACCAAGT
696528 ATGTATCGATACA
1 ATGTATCGATACA
696541 ATGTATCGATACA
1 ATGTATCGATACA
696554 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:696551 original size:32 final size:33
Alignment explanation
Indices: 696510--696573 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
696500 TAGCCAAACT
* **
696510 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
696542 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
696574 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:698803 original size:21 final size:21
Alignment explanation
Indices: 698770--698819 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
698760 TTGCAGGTTG
*
698770 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
698792 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
698812 AAAGTAAA
1 AAA-TAAA
698820 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 5 0.21
21 12 0.50
22 7 0.29
ACGTcount: A:0.54, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:700637 original size:15 final size:15
Alignment explanation
Indices: 700617--700647 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
700607 TAAAAATGTC
*
700617 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
700632 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
700647 C
1 C
700648 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:702747 original size:13 final size:13
Alignment explanation
Indices: 702729--702766 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
702719 CATTTTTCTT
702729 TGTATCGATACAA
1 TGTATCGATACAA
*
702742 TGTATCGATACAC
1 TGTATCGATACAA
702755 TGTATCGATACA
1 TGTATCGATACA
702767 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:702921 original size:20 final size:20
Alignment explanation
Indices: 702878--702923 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
702868 AAATCTTTTG
702878 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
702899 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
702919 CAAAA
1 CAAAA
702924 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:705262 original size:13 final size:13
Alignment explanation
Indices: 705244--705269 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
705234 TACACCAAGT
705244 ATGTATCGATACA
1 ATGTATCGATACA
705257 ATGTATCGATACA
1 ATGTATCGATACA
705270 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:705267 original size:32 final size:33
Alignment explanation
Indices: 705226--705289 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
705216 TAGCCAAACT
* **
705226 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
705258 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
705290 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:707831 original size:17 final size:16
Alignment explanation
Indices: 707809--707851 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
707799 AAATGTTATG
707809 TATTATATTTATATTTA
1 TATTATATTTATA-TTA
* *
707826 TATTATTTTTGTATTA
1 TATTATATTTATATTA
707842 TAATTATATT
1 T-ATTATATT
707852 CAAAGAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTATATTTATATTA
Found at i:707955 original size:16 final size:18
Alignment explanation
Indices: 707929--707962 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
707919 ATTTGTATCG
707929 TATTAATATTAT-TTTTA
1 TATTAATATTATATTTTA
707946 TATT-ATATTATATTTTA
1 TATTAATATTATATTTTA
707963 GTTATTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTAATATTATATTTTA
Found at i:709294 original size:15 final size:16
Alignment explanation
Indices: 709259--709302 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
709249 TGAATATTTA
*
709259 ATTGAGTTATTTTTTG
1 ATTGAATTATTTTTTG
*
709275 TTTGAATTATTTTTT-
1 ATTGAATTATTTTTTG
*
709290 ATTGATTTATTTT
1 ATTGAATTATTTT
709303 AAATTTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.68
Consensus pattern (16 bp):
ATTGAATTATTTTTTG
Found at i:709321 original size:16 final size:16
Alignment explanation
Indices: 709296--709376 Score: 101
Period size: 16 Copynumber: 5.1 Consensus size: 16
709286 TTTTATTGAT
709296 TTATTTTAAATTTAAA
1 TTATTTTAAATTTAAA
* * * *
709312 TAAATTTAAACTAAAA
1 TTATTTTAAATTTAAA
709328 TTATTTTAAATTTAAA
1 TTATTTTAAATTTAAA
709344 TTATTTTAAATTT-AA
1 TTATTTTAAATTTAAA
*
709359 TTTTTTTAAAATTTAAA
1 TTATTTT-AAATTTAAA
709376 T
1 T
709377 CTCAATTCCC
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
15 8 0.15
16 43 0.80
17 3 0.06
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATTTTAAATTTAAA
Found at i:713329 original size:43 final size:44
Alignment explanation
Indices: 713243--713332 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 44
713233 ATTTAAGGGT
* *
713243 TAACCAAAACAATTGAATTTAGCCGATACCCACAAAGAAAACTA
1 TAACCAAAACAATTGAATTTAACCAATACCCACAAAGAAAACTA
* *
713287 TAACCAAAACAATTGAA-TTAATCAATACCCACAACGAAAACTA
1 TAACCAAAACAATTGAATTTAACCAATACCCACAAAGAAAACTA
713330 TAA
1 TAA
713333 AAAAAGATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 25 0.60
44 17 0.40
ACGTcount: A:0.52, C:0.22, G:0.07, T:0.19
Consensus pattern (44 bp):
TAACCAAAACAATTGAATTTAACCAATACCCACAAAGAAAACTA
Found at i:713504 original size:18 final size:18
Alignment explanation
Indices: 713459--713509 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
713449 AAAATATAAA
*
713459 TTATTAATATATTAAAAT
1 TTATAAATATATTAAAAT
*
713477 TTATACATATA-TAAAAT
1 TTATAAATATATTAAAAT
*
713494 ATTTTAAATATGATTA
1 -TTATAAATAT-ATTA
713510 TAATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 6 0.23
18 17 0.65
19 1 0.04
20 2 0.08
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
TTATAAATATATTAAAAT
Found at i:713771 original size:16 final size:16
Alignment explanation
Indices: 713750--713782 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
713740 CAGCCATGAG
713750 AGAAAC-AGAAAAGAAA
1 AGAAACGAGAAAA-AAA
713766 AGAAACGAGAAAAAAA
1 AGAAACGAGAAAAAAA
713782 A
1 A
713783 TGAATAGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.76, C:0.06, G:0.18, T:0.00
Consensus pattern (16 bp):
AGAAACGAGAAAAAAA
Found at i:714475 original size:20 final size:20
Alignment explanation
Indices: 714442--714480 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
714432 TATTTTTATT
714442 TAAATTTAATTATAAAAATA
1 TAAATTTAATTATAAAAATA
714462 TAAATATTAA-TATAAAAAT
1 TAAAT-TTAATTATAAAAAT
714481 TATTTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAATTTAATTATAAAAATA
Found at i:715379 original size:20 final size:20
Alignment explanation
Indices: 715354--715406 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
715344 TTTCAACGAT
715354 TTGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATG
** *
715374 TTGTATCGATACATATTATT
1 TTGTATCGATACATAAAATG
715394 TTGTATCGATACA
1 TTGTATCGATACA
715407 ATTTAAGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
TTGTATCGATACATAAAATG
Found at i:715467 original size:13 final size:13
Alignment explanation
Indices: 715449--715473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
715439 ATTACTCAAA
715449 TGTATCGATACAT
1 TGTATCGATACAT
715462 TGTATCGATACA
1 TGTATCGATACA
715474 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:715575 original size:52 final size:52
Alignment explanation
Indices: 715482--715609 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
715472 CACTGATCTT
*
715482 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
715533 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
715585 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
715610 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:722495 original size:15 final size:14
Alignment explanation
Indices: 722461--722506 Score: 62
Period size: 15 Copynumber: 3.4 Consensus size: 14
722451 AAAAGTGATG
722461 AAAAAAA-A-AAAC
1 AAAAAAACACAAAC
722473 AAAAAAACACACAAC
1 AAAAAAACACA-AAC
722488 AAAAAAACACAAA-
1 AAAAAAACACAAAC
722501 AAAAAA
1 AAAAAA
722507 GAGTGCAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 7 0.23
13 7 0.23
14 3 0.10
15 14 0.45
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAACACAAAC
Found at i:723841 original size:31 final size:31
Alignment explanation
Indices: 723803--723917 Score: 151
Period size: 31 Copynumber: 3.7 Consensus size: 31
723793 TTAAAAAAAA
723803 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
723834 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* *
723865 AAAGTCCACGACGCAGTGGC-ATCCTCCTTTTC
1 AAAGTCCACGACTCAGTGGCAAT-CT-CTTCTC
* * *
723897 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
723918 CCTTTTTCTT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
30 2 0.03
31 51 0.70
32 20 0.27
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.22
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:723916 original size:32 final size:31
Alignment explanation
Indices: 723880--723953 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 31
723870 CCACGACGCA
723880 GTGGCATCC-TCCTTTTCAAAGCCCACAACTCC
1 GTGGCA-CCTTCCTTTT-AAAGCCCACAACTCC
* *
723912 GTGGCACCTTTTTCTTTTAAAGCCCACAACTCT
1 GTGGCACC--TTCCTTTTAAAGCCCACAACTCC
723945 GTGGCACCT
1 GTGGCACCT
723954 ACAACTTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
31 3 0.08
32 6 0.16
33 22 0.59
34 6 0.16
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.30
Consensus pattern (31 bp):
GTGGCACCTTCCTTTTAAAGCCCACAACTCC
Found at i:724004 original size:37 final size:36
Alignment explanation
Indices: 723962--724107 Score: 180
Period size: 37 Copynumber: 4.2 Consensus size: 36
723952 CTACAACTTT
723962 GTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCC
1 GTGGCACTCTTTTTTCCTTTT-AAAGCCCACAACTCC
* **
723999 GTGGCAC-C-TTCTT-CTTTT-AAGCCCACAACTTT
1 GTGGCACTCTTTTTTCCTTTTAAAGCCCACAACTCC
724031 GTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCC
1 GTGGCACTCTTTTTTCCTTTT-AAAGCCCACAACTCC
* *
724068 GTGGCAC-C-TTTTT-CTTTTAAAGCCCACAGCTCT
1 GTGGCACTCTTTTTTCCTTTTAAAGCCCACAACTCC
724101 GTGGCAC
1 GTGGCAC
724108 CTACAACTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
32 19 0.20
33 21 0.22
34 14 0.15
35 14 0.15
36 2 0.02
37 26 0.27
ACGTcount: A:0.18, C:0.33, G:0.14, T:0.35
Consensus pattern (36 bp):
GTGGCACTCTTTTTTCCTTTTAAAGCCCACAACTCC
Found at i:724065 original size:69 final size:71
Alignment explanation
Indices: 723954--724259 Score: 332
Period size: 69 Copynumber: 4.1 Consensus size: 71
723944 TGTGGCACCT
* *
723954 ACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCT-TTT-
1 ACAACTCTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTCTTTA
724017 AAGCCC
66 AAGCCC
*
724023 ACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTA
1 ACAACTCTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTCTTTA
724087 AAGCCC
66 AAGCCC
* *
724093 ACAGCTCTGTGGCACCTACAACTTTGTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCCGTG
1 ACAACTCTGTGGCA-CT----C----T-----T-T-TTT-CCTTTTCAAAGCCCACAACTCCGTG
*
724158 GCACCTTTTTCTGTTTAAAGCCC
49 GCACCTTTTTCTCTTTAAAGCCC
* *
724181 ACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCATCTT
1 ACAACTCTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTC-TCTT
*
724246 T-AAGTCC
64 TAAAGCCC
724253 ACAACTC
1 ACAACTC
724260 CATGGCATCT
Statistics
Matches: 206, Mismatches: 10, Indels: 39
0.81 0.04 0.15
Matches are distributed among these distances:
69 62 0.30
70 18 0.09
71 30 0.15
72 21 0.10
73 5 0.02
74 1 0.00
75 1 0.00
79 2 0.01
83 1 0.00
84 1 0.00
85 1 0.00
86 3 0.01
87 38 0.18
88 22 0.11
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (71 bp):
ACAACTCTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTCTTTA
AAGCCC
Found at i:724110 original size:156 final size:158
Alignment explanation
Indices: 723889--724259 Score: 613
Period size: 156 Copynumber: 2.3 Consensus size: 158
723879 AGTGGCATCC
723889 TCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACCT
1 TCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACCT
* *
723954 ACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCT-TTT-
66 ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTGTTTA
**
724017 AAGCCCACAACTTTGTGGCACTCTTTTT
131 AAGCCCACAACTCCGTGGCACTCTTTTT
*
724045 TCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAGCTCTGTGGCACCT
1 TCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACCT
* *
724110 ACAACTTTGTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
66 ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTGTTTA
724175 AAGCCCACAACTCCGTGGCACTCTTTTT
131 AAGCCCACAACTCCGTGGCACTCTTTTT
* *
724203 CCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCATCTTT-AAGTCCACAACTC
1 TCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTC-T-TTTAAAGCCCACAACTC
724260 CATGGCATCT
Statistics
Matches: 200, Mismatches: 10, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
156 120 0.60
157 3 0.01
158 55 0.28
159 7 0.04
160 12 0.06
161 3 0.01
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (158 bp):
TCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACCT
ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTGTTTA
AAGCCCACAACTCCGTGGCACTCTTTTT
Found at i:724160 original size:37 final size:36
Alignment explanation
Indices: 724118--724291 Score: 203
Period size: 37 Copynumber: 4.9 Consensus size: 36
724108 CTACAACTTT
724118 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCC
1 GTGGCACTCT-TTTCCCTTTTTAAAGCCCACAACTCC
* *
724155 GTGGCAC-CTTTT-TCTGTTTAAAGCCCACAACTCC
1 GTGGCACTCTTTTCCCTTTTTAAAGCCCACAACTCC
*
724189 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCC
1 GTGGCACTC-TTTTCCCTTTTTAAAGCCCACAACTCC
* * * *
724226 GTGGCACTCTTTTTCATCTTT-AAGTCCACAACTCC
1 GTGGCACTCTTTTCCCTTTTTAAAGCCCACAACTCC
* **
724261 ATGGCA-TCTTTCTCCCTTCCTAAAGCCCACA
1 GTGGCACTCTTT-TCCCTTTTTAAAGCCCACA
724292 CAAGTCGGTG
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
34 32 0.28
35 26 0.23
36 22 0.19
37 35 0.30
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.33
Consensus pattern (36 bp):
GTGGCACTCTTTTCCCTTTTTAAAGCCCACAACTCC
Found at i:724169 original size:87 final size:88
Alignment explanation
Indices: 724023--724195 Score: 294
Period size: 87 Copynumber: 2.0 Consensus size: 88
724013 TTTTAAGCCC
* *
724023 ACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTA
1 ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
* *
724087 AAGCCCACAGCTCTGTGGCACCT
66 AAGCCCACAACTCCGTGGCACCT
*
724110 ACAACTTTGTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
1 ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
724175 AAGCCCACAACTCCGTGGCAC
66 AAGCCCACAACTCCGTGGCAC
724196 TCTTTTTCCC
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 57 0.71
88 23 0.29
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.33
Consensus pattern (88 bp):
ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
AAGCCCACAACTCCGTGGCACCT
Found at i:724215 original size:71 final size:72
Alignment explanation
Indices: 724118--724291 Score: 239
Period size: 71 Copynumber: 2.4 Consensus size: 72
724108 CTACAACTTT
* * *
724118 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC-TGTTTAAAGCCC
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCATCTTT-AAGCCC
724181 ACAACTCC
65 ACAACTCC
*
724189 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCATCTTTAAGTCCA
1 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCATCTTTAAGCCCA
724254 CAACTCC
66 CAACTCC
* * *
724261 ATGGCA-TCTTTCTCCC-TTCCTAAAGCCCACA
1 GTGGCACTCTTTTTCCCTTTTC-AAAGCCCACA
724292 CAAGTCGGTG
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
70 3 0.03
71 61 0.66
72 25 0.27
73 4 0.04
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.33
Consensus pattern (72 bp):
GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCATCTTTAAGCCCA
CAACTCC
Found at i:724319 original size:33 final size:35
Alignment explanation
Indices: 724276--724345 Score: 117
Period size: 33 Copynumber: 2.1 Consensus size: 35
724266 ATCTTTCTCC
*
724276 CTTCCTAAAGCCCACACAAGTCGGTGGTAA-CCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
724310 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
724344 CT
1 CT
724346 AAGCCCAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 23 0.68
34 11 0.32
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.21
Consensus pattern (35 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:724488 original size:21 final size:21
Alignment explanation
Indices: 724464--724531 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
724454 ATGTAGCTGG
724464 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* * *
724485 CCTTTAAGTC--CA-ATGTAGCTGG
1 CCTTGAA-TCAGCACAT-TGGC--A
724507 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
724528 CCTT
1 CCTT
724532 CATCTTTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:724510 original size:22 final size:22
Alignment explanation
Indices: 724443--724510 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
724433 GCACCTTTAT
724443 CTTTAAGTCCAATGTAGCTGGC
1 CTTTAAGTCCAATGTAGCTGGC
* * *
724465 CTTGAA-TCAGCACAT-TGGC--AC
1 CTTTAAGTC--CA-ATGTAGCTGGC
724486 CTTTAAGTCCAATGTAGCTGGC
1 CTTTAAGTCCAATGTAGCTGGC
724508 CTT
1 CTT
724511 GAATCAGCAC
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (22 bp):
CTTTAAGTCCAATGTAGCTGGC
Found at i:724551 original size:92 final size:92
Alignment explanation
Indices: 724394--724946 Score: 822
Period size: 92 Copynumber: 5.9 Consensus size: 92
724384 CCTTTTCCAT
* * * * * *
724394 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
724459 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
724486 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
* *
724551 GCTGGCCTTGACTCAACACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
724578 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
724643 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
** *
724670 CTTTAAG-CC-CCATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
724733 GCTGGCCTTGAATCAGCACGTTGACATCTTTTTGGCAC
66 GCTGGCCTTGAATCAG--C----ACA-----TTGGCAC
724771 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
724836 GCTGGCCTTGAATCAGTACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
724863 CTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
724928 GCTGGCCTTGAATCAGCAC
66 GCTGGCCTTGAATCAGCAC
724947 GTTGACATCT
Statistics
Matches: 427, Mismatches: 21, Indels: 26
0.90 0.04 0.05
Matches are distributed among these distances:
90 67 0.16
91 2 0.00
92 269 0.63
96 3 0.01
97 3 0.01
101 14 0.03
102 2 0.00
103 67 0.16
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:724815 original size:193 final size:195
Alignment explanation
Indices: 724571--725012 Score: 780
Period size: 193 Copynumber: 2.3 Consensus size: 195
724561 ACTCAACACA
724571 TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
1 TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
724636 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCC-CATCGCTGGCCTTGAATCAG
66 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCACATCGCTGGCCTTGAATCAG
724700 CATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATC-TTT
131 CATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCTTTT
724764 TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
1 TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
* *
724829 CAATGTAGCTGGCCTTGAATCAGTACATTGGCACCTTTAAGCCCGATATCGCTGGCCTTGAATCA
66 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCC-ACATCGCTGGCCTTGAATCA
724894 GCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCTTT
130 GCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCTTT
724959 T
195 T
** * * * * *
724960 TTCTCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
725013 TATCACTTTT
Statistics
Matches: 237, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
193 108 0.46
195 80 0.34
196 49 0.21
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (195 bp):
TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCACATCGCTGGCCTTGAATCAG
CATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCTTTT
Found at i:724956 original size:49 final size:49
Alignment explanation
Indices: 724345--724957 Score: 675
Period size: 49 Copynumber: 12.9 Consensus size: 49
724335 GCAACCCTTC
* * * *
724345 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--TCTT-CATCTT
* * *
724397 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
724446 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
*
724489 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* *
724538 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
724581 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
724630 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
724673 TAAGCCCCA--TCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
724720 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCTTTTTGGCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC---TT--CATCTT
* * *
724774 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
*
724823 TAAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * * *
724866 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
724915 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTT
724958 TTTTCTCATC
Statistics
Matches: 474, Mismatches: 56, Indels: 65
0.80 0.09 0.11
Matches are distributed among these distances:
41 26 0.05
43 125 0.26
45 4 0.01
47 12 0.03
49 226 0.48
50 2 0.00
51 2 0.00
52 37 0.08
54 40 0.08
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
Found at i:725011 original size:55 final size:52
Alignment explanation
Indices: 724863--725021 Score: 155
Period size: 55 Copynumber: 3.1 Consensus size: 52
724853 ACATTGGCAC
*
724863 CTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATC---TTCAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTTTCAT
** * * ** *
724912 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCTTTTTTCTCAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC--TTTT-TCAT
* * * *
724967 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCA-
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTTTCAT
725018 CTTT
1 CTTT
725022 TCTCATCATC
Statistics
Matches: 85, Mismatches: 19, Indels: 10
0.75 0.17 0.09
Matches are distributed among these distances:
49 36 0.42
51 4 0.05
52 3 0.04
53 3 0.04
54 1 0.01
55 38 0.45
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (52 bp):
CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTTTCAT
Found at i:725905 original size:20 final size:20
Alignment explanation
Indices: 725880--725932 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
725870 TTTCAACGAT
725880 TTGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATG
** *
725900 TTGTATCGATACATATTATT
1 TTGTATCGATACATAAAATG
725920 TTGTATCGATACA
1 TTGTATCGATACA
725933 ATTTAAGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
TTGTATCGATACATAAAATG
Found at i:725993 original size:13 final size:13
Alignment explanation
Indices: 725975--725999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
725965 ATTACTCAAA
725975 TGTATCGATACAT
1 TGTATCGATACAT
725988 TGTATCGATACA
1 TGTATCGATACA
726000 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:729273 original size:39 final size:39
Alignment explanation
Indices: 729194--729292 Score: 121
Period size: 39 Copynumber: 2.5 Consensus size: 39
729184 CATAAATATG
*
729194 TGACTAATGCATGAATTCTTTATGACAATATGAAAGATA
1 TGACTAATGCATGGATTCTTTATGACAATATGAAAGATA
* * *
729233 TGATTAATGCATGGATTCTTTAT-AGGAATCT-AAAGAATA
1 TGACTAATGCATGGATTCTTTATGA-CAATATGAAAG-ATA
*
729272 TGACTAAAGCATGGATTCTTT
1 TGACTAATGCATGGATTCTTT
729293 TTAAAATCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
38 5 0.10
39 47 0.90
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.35
Consensus pattern (39 bp):
TGACTAATGCATGGATTCTTTATGACAATATGAAAGATA
Found at i:729307 original size:39 final size:39
Alignment explanation
Indices: 729194--729307 Score: 101
Period size: 39 Copynumber: 2.9 Consensus size: 39
729184 CATAAATATG
* *
729194 TGACTAATGCATGAATTCTTTAT-GACAAT-ATGAAAG-ATA
1 TGACTAAAGCATGGATTCTTTATAGA-AATCA--AAAGAATA
* * * *
729233 TGATTAATGCATGGATTCTTTATAGGAATCTAAAGAATA
1 TGACTAAAGCATGGATTCTTTATAGAAATCAAAAGAATA
*
729272 TGACTAAAGCATGGATTCTTTTTA-AAATCCAAAAGA
1 TGACTAAAGCATGGATTCTTTATAGAAAT-CAAAAGA
729308 TGTAATGTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
38 7 0.11
39 54 0.87
40 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (39 bp):
TGACTAAAGCATGGATTCTTTATAGAAATCAAAAGAATA
Found at i:738131 original size:21 final size:21
Alignment explanation
Indices: 738107--738159 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
738097 ATAAATGCAT
*
738107 AATGTATCGATACATTATGAA
1 AATGTATCAATACATTATGAA
*
738128 AATGTATCAATACATTATGTA
1 AATGTATCAATACATTATGAA
738149 AATGTATCAAT
1 AATGTATCAAT
738160 TTATTTGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (21 bp):
AATGTATCAATACATTATGAA
Found at i:753354 original size:19 final size:21
Alignment explanation
Indices: 753302--753357 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 21
753292 TTTTATATAA
*
753302 TTTTTTAAAAAAATATCAACT
1 TTTTTTAAAAAATTATCAACT
* *
753323 TTTTTATTAAAAATTAT-TA-T
1 TTTTT-TAAAAAATTATCAACT
753343 TTTTTTAAAAAATTA
1 TTTTTTAAAAAATTA
753358 CCAATACCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 9 0.30
20 6 0.20
21 6 0.20
22 9 0.30
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTTTTAAAAAATTATCAACT
Found at i:753700 original size:16 final size:16
Alignment explanation
Indices: 753679--753711 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
753669 TTCACTCTCA
753679 TATATTTAAAATAAAG
1 TATATTTAAAATAAAG
*
753695 TATATTTAGAATAAAG
1 TATATTTAAAATAAAG
753711 T
1 T
753712 TTACACAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (16 bp):
TATATTTAAAATAAAG
Found at i:757951 original size:2 final size:2
Alignment explanation
Indices: 757944--757986 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
757934 GAAGGTTAAC
*
757944 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
757986 T
1 T
757987 TTTGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:762996 original size:59 final size:57
Alignment explanation
Indices: 762927--763175 Score: 229
Period size: 59 Copynumber: 4.3 Consensus size: 57
762917 GTATTTTAGT
* * * *
762927 GTCATCTAGGTTATTTTCGATAATCTAGGGACCATTTAGTAATTTCTCA-ACACTGTAGG
1 GTCATTTAGGTTATTTT--ATAATCTAGGGACCATTTAGCAATTT-TCATACATTCTAGG
* * *
762986 GTCATTTAGGTTAGTTTTTATAATCTAGGGACCATTTAGTAATTTTTATACATTTTAGG
1 GTCATTTAGGTTA--TTTTATAATCTAGGGACCATTTAGCAATTTTCATACATTCTAGG
** * * *
763045 GTCATTTAGGCAATTTT-TCA--TAGGGATCATTTAGCAATTTTCATACATTCTAGA
1 GTCATTTAGGTTATTTTATAATCTAGGGACCATTTAGCAATTTTCATACATTCTAGG
* * * *
763099 GTTATTTAGGTTATTTTCCATAATCTAGAGACCATTTAGCAA-TTTCATACATTTTAGA
1 GTCATTTAGGTTATTTT--ATAATCTAGGGACCATTTAGCAATTTTCATACATTCTAGG
*
763157 GTCTTTTAAGGTTAGTTTT
1 GTCATTT-AGGTTA-TTTT
763176 GTACCTACAA
Statistics
Matches: 159, Mismatches: 21, Indels: 19
0.80 0.11 0.10
Matches are distributed among these distances:
54 43 0.27
56 2 0.01
57 6 0.04
58 22 0.14
59 78 0.49
60 4 0.03
61 4 0.03
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (57 bp):
GTCATTTAGGTTATTTTATAATCTAGGGACCATTTAGCAATTTTCATACATTCTAGG
Found at i:763014 original size:29 final size:30
Alignment explanation
Indices: 762982--763115 Score: 90
Period size: 30 Copynumber: 4.7 Consensus size: 30
762972 CTCAACACTG
*
762982 TAGGGTCATTTAGGTTAGTTTTTATA-A-TC
1 TAGGGTCATTTAGG-TAATTTTTATACATTC
* *
763011 TAGGGACCATTTA-GTAATTTTTATACATTT
1 TAGGG-TCATTTAGGTAATTTTTATACATTC
*
763041 TAGGGTCATTTAGGCAA-TTTT-T-CA---
1 TAGGGTCATTTAGGTAATTTTTATACATTC
* *
763065 TAGGGATCATTTA-GCAATTTTCATACATTC
1 TAGGG-TCATTTAGGTAATTTTTATACATTC
* * *
763095 TAGAGTTATTTAGGTTATTTT
1 TAGGGTCATTTAGGTAATTTT
763116 CCATAATCTA
Statistics
Matches: 83, Mismatches: 10, Indels: 23
0.72 0.09 0.20
Matches are distributed among these distances:
24 9 0.11
25 10 0.12
26 1 0.01
27 4 0.05
28 11 0.13
29 23 0.28
30 25 0.30
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (30 bp):
TAGGGTCATTTAGGTAATTTTTATACATTC
Found at i:763045 original size:30 final size:29
Alignment explanation
Indices: 762949--763062 Score: 83
Period size: 30 Copynumber: 3.9 Consensus size: 29
762939 ATTTTCGATA
*
762949 ATCTAGGGACCATTTA-GTAATTTCTCA-AC
1 ATCTAGGG-CCATTTAGGTAATTT-TTATAC
* * *
762978 ACTGTAGGGTCATTTAGGTTAGTTTTTATA-
1 A-TCTAGGGCCATTTAGG-TAATTTTTATAC
763008 ATCTAGGGACCATTTA-GTAATTTTTATAC
1 ATCTAGGG-CCATTTAGGTAATTTTTATAC
* * *
763037 ATTTTAGGGTCATTTAGGCAATTTTT
1 A-TCTAGGGCCATTTAGGTAATTTTT
763063 CATAGGGATC
Statistics
Matches: 67, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
28 10 0.15
29 21 0.31
30 30 0.45
31 6 0.09
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (29 bp):
ATCTAGGGCCATTTAGGTAATTTTTATAC
Found at i:763089 original size:23 final size:24
Alignment explanation
Indices: 763041--763089 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
763031 TTATACATTT
763041 TAGGGTCATTTAGGCAATTTTTCA
1 TAGGGTCATTTAGGCAATTTTTCA
763065 TAGGGATCATTTA-GCAA-TTTTCA
1 TAGGG-TCATTTAGGCAATTTTTCA
763088 TA
1 TA
763090 CATTCTAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 8 0.33
24 9 0.38
25 7 0.29
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (24 bp):
TAGGGTCATTTAGGCAATTTTTCA
Found at i:763111 original size:113 final size:112
Alignment explanation
Indices: 762952--763164 Score: 277
Period size: 113 Copynumber: 1.9 Consensus size: 112
762942 TTCGATAATC
* * * * *
762952 TAGGGACCATTTAGTAATTTCTCAACACTGTAGGGTCATTTAGGTTAGTTTT-TATAATCTAGGG
1 TAGGGACCATTTAGCAATTTCTCAACACTCTAGAGTCATTTAGGTTA-TTTTCCATAATCTAGAG
* * *
763016 ACCATTTAGTAATTTTTATACATTTTAGGGTCATTTAGGCAATTTTTCA
65 ACCATTTAGCAA-TTTCATACATTTTAGAGTCATTTAGGCAATTTTTCA
* * *
763065 TAGGGATCATTTAGCAATTT-TCATACATTCTAGAGTTATTTAGGTTATTTTCCATAATCTAGAG
1 TAGGGACCATTTAGCAATTTCTCA-ACACTCTAGAGTCATTTAGGTTATTTTCCATAATCTAGAG
*
763129 ACCATTTAGCAATTTCATACATTTTAGAGTCTTTTA
65 ACCATTTAGCAATTTCATACATTTTAGAGTCATTTA
763165 AGGTTAGTTT
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
112 28 0.33
113 58 0.67
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (112 bp):
TAGGGACCATTTAGCAATTTCTCAACACTCTAGAGTCATTTAGGTTATTTTCCATAATCTAGAGA
CCATTTAGCAATTTCATACATTTTAGAGTCATTTAGGCAATTTTTCA
Found at i:763115 original size:54 final size:54
Alignment explanation
Indices: 763011--763164 Score: 148
Period size: 54 Copynumber: 2.8 Consensus size: 54
763001 TTTTATAATC
* * * * *
763011 TAGGGACCATTTAGTAATTTTTATACATTTTAGGGTCATTTAGGCAATTTTTCA
1 TAGGGACCATTTAGCAATTTTCATACATTCTAGAGTCATTTAGGCAATTTTCCA
* * **
763065 TAGGGATCATTTAGCAATTTTCATACATTCTAGAGTTATTTAGGTTATTTTCCATAA
1 TAGGGACCATTTAGCAATTTTCATACATTCTAGAGTCATTTAGGCAATTTTCC---A
* * *
763122 TCTAGAGACCATTTAGCAA-TTTCATACATTTTAGAGTCTTTTA
1 --TAGGGACCATTTAGCAATTTTCATACATTCTAGAGTCATTTA
763165 AGGTTAGTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
54 44 0.54
57 1 0.01
58 21 0.26
59 15 0.19
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44
Consensus pattern (54 bp):
TAGGGACCATTTAGCAATTTTCATACATTCTAGAGTCATTTAGGCAATTTTCCA
Found at i:763143 original size:29 final size:29
Alignment explanation
Indices: 763072--763157 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
763062 TCATAGGGAT
*
763072 CATTTAGCAATTTTCATACATTCTAGAGT
1 CATTTAGCAATTTTCATACATTCTAGAGC
* **
763101 TATTTAGGTTATTTTCCATA-A-TCTAGAGAC
1 CATTTA-GCAATTTT-CATACATTCTAGAG-C
*
763131 CATTTAGCAA-TTTCATACATTTTAGAG
1 CATTTAGCAATTTTCATACATTCTAGAG
763158 TCTTTTAAGG
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
27 4 0.09
28 4 0.09
29 20 0.45
30 12 0.27
31 4 0.09
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (29 bp):
CATTTAGCAATTTTCATACATTCTAGAGC
Found at i:763339 original size:98 final size:97
Alignment explanation
Indices: 763185--763424 Score: 241
Period size: 97 Copynumber: 2.5 Consensus size: 97
763175 TGTACCTACA
* * * * * *
763185 ATCAAAATTGAATCTTTTAAGGTTAGTTTTATAATTTTTATCAAAATTGACTAAAATCGAATCTT
1 ATCAAAATTGAATCTTTTAAGGTTAGTTTTATAACTTTCATCAAAACTAACCAAAAT-GAACCTT
763250 TTAAGGTTAGTTTTGTACGTACCGTCAAAACTG
65 TTAAGGTTAGTTTTGTACGTACCGTCAAAACTG
* * * * *
763283 ATCAAAATTGAGTTTTTTAAGGTTAGTTTTATACCTTTCATTAAAACTAACCAAAATGAGCCTTT
1 ATCAAAATTGAATCTTTTAAGGTTAGTTTTATAACTTTCATCAAAACTAACCAAAATGAACCTTT
* ** * * **
763348 TAGGGTTAGTTTTGTATTTTCCATCAAAACCA
66 TAAGGTTAGTTTTGTACGTACCGTCAAAACTG
* * * * *
763380 ACCAAAATCGTATCTTTTAGGGTTAG-TTTGT-ACTTTTCATCAAAA
1 ATCAAAATTGAATCTTTTAAGGTTAGTTTTATAAC-TTTCATCAAAA
763425 TAGACCTCAA
Statistics
Matches: 114, Mismatches: 27, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
95 1 0.01
96 14 0.12
97 51 0.45
98 48 0.42
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (97 bp):
ATCAAAATTGAATCTTTTAAGGTTAGTTTTATAACTTTCATCAAAACTAACCAAAATGAACCTTT
TAAGGTTAGTTTTGTACGTACCGTCAAAACTG
Found at i:763377 original size:48 final size:48
Alignment explanation
Indices: 763187--763424 Score: 194
Period size: 49 Copynumber: 4.9 Consensus size: 48
763177 TACCTACAAT
* * * * * *
763187 CAAAATTGAATCTTTTAAGGTTAGTTTTATAATTTTTATCAAAATTGAC
1 CAAAATCGAGTCTTTTAAGGTTAGTTTTGT-ATTTTCATCAAAACTAAC
* * * ** * * *
763236 TAAAATCGAATCTTTTAAGGTTAGTTTTGTACGTACCGTCAAAACTGAT
1 CAAAATCGAGTCTTTTAAGGTTAGTTTTGTA-TTTTCATCAAAACTAAC
* * * * *
763285 CAAAATTGAGTTTTTTAAGGTTAGTTTTATACCTTTCATTAAAACTAAC
1 CAAAATCGAGTCTTTTAAGGTTAGTTTTGTA-TTTTCATCAAAACTAAC
* * *
763334 CAAAAT-GAGCCTTTTAGGGTTAGTTTTGTATTTTCCATCAAAACCAAC
1 CAAAATCGAGTCTTTTAAGGTTAGTTTTGTATTTT-CATCAAAACTAAC
*
763382 CAAAATCGTA-TCTTTTAGGGTTAG-TTTGTACTTTTCATCAAAA
1 CAAAATCG-AGTCTTTTAAGGTTAGTTTTGTA-TTTTCATCAAAA
763425 TAGACCTCAA
Statistics
Matches: 154, Mismatches: 30, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
47 3 0.02
48 52 0.34
49 98 0.64
50 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (48 bp):
CAAAATCGAGTCTTTTAAGGTTAGTTTTGTATTTTCATCAAAACTAAC
Found at i:768063 original size:155 final size:155
Alignment explanation
Indices: 767747--768242 Score: 576
Period size: 155 Copynumber: 3.2 Consensus size: 155
767737 GCTAAGTTCA
* * **
767747 AAAAAAATTATGAAAATGCCCTTAGGGGATACCTTCGACGTAGAAGTACCCGATACCTTTAAA-A
1 AAAAAAATTATGAAAATGCCC-TAGGGGATACTTTCGACGTAGAAGTACTCGATACCCCTAAAGA
* * *
767811 GACTTAAAAATGATTATAAATGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAA
65 -ACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAGA
* * * *
767876 C-CTGGTGACAATCTATGACTCGATTCT
129 CTC-GGTGACAACCTAGGATTCAATTCT
** * *
767903 -AAAAAATTACCAAAATGCCCATAGGGGATATTTTCGACGTAGAAGTGCTCGATACCCCTAAAGA
1 AAAAAAATTATGAAAATGCCC-TAGGGGATACTTTCGACGTAGAAGTACTCGATACCCCTAAAGA
* * *
767967 ACTTAAAAAGGATTATAAATTGGGATGAACTTATCCTAAATACTCACCTTCAGTATAAAAGCAGA
65 ACTTAAAAAGGATTATAAA-TGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAGA
*
768032 CTCGGTAACAACCTAGGATTCAATT-T
129 CTCGGTGACAACCTAGGATTCAATTCT
* * * * *
768058 TAAAAAATTATGAAAATACCCCAGGGGATACTTTCGACGTAGAAGTACTCGATACCCCCAAAGGA
1 AAAAAAATTATGAAAATGCCCTAGGGGATACTTTCGACGTAGAAGTACTCGATACCCCTAAAGAA
* * * *
768123 CTTAACAAGGA-TATAGATGGGATGAGCCTATCCTAAAT-CTCACCTTCGGCATAAAAG-TGCAC
66 CTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAG-AC
* **
768185 TCAGTGACAACCTAGGATTCGGTTCT
130 TCGGTGACAACCTAGGATTCAATTCT
*
768211 AAAAAAATT-TCAAAAATGCCCTAGGGGTATAC
1 AAAAAAATTAT-GAAAATGCCCTAGGGG-ATAC
768243 ATTTGATATG
Statistics
Matches: 289, Mismatches: 43, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
151 1 0.00
152 40 0.14
153 41 0.14
154 9 0.03
155 121 0.42
156 76 0.26
157 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (155 bp):
AAAAAAATTATGAAAATGCCCTAGGGGATACTTTCGACGTAGAAGTACTCGATACCCCTAAAGAA
CTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAGACT
CGGTGACAACCTAGGATTCAATTCT
Found at i:769591 original size:20 final size:20
Alignment explanation
Indices: 769499--769576 Score: 131
Period size: 20 Copynumber: 3.9 Consensus size: 20
769489 GTTGAACTCA
769499 ATGTATCGATACATTTATGG
1 ATGTATCGATACATTTATGG
769519 ATGTATCGATACATTTATGG
1 ATGTATCGATACATTTATGG
*
769539 ATGTATCGATACATTT-TGA
1 ATGTATCGATACATTTATGG
769558 ATTGTATCGATACATTTAT
1 A-TGTATCGATACATTTAT
769577 ATGTGTACCG
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
19 3 0.05
20 51 0.93
21 1 0.02
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTATGG
Found at i:769675 original size:21 final size:21
Alignment explanation
Indices: 769632--769687 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
769622 GCCAATAAAG
* * *
769632 TGTATCGATACA-ATACATTA
1 TGTATCAATACATTTACATAA
*
769652 TGTATCAATATATTTACATAA
1 TGTATCAATACATTTACATAA
*
769673 TGTATCGATACATTT
1 TGTATCAATACATTT
769688 CAACTTGTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 10 0.34
21 19 0.66
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (21 bp):
TGTATCAATACATTTACATAA
Found at i:771775 original size:78 final size:79
Alignment explanation
Indices: 771634--771790 Score: 307
Period size: 78 Copynumber: 2.0 Consensus size: 79
771624 AGAGGAGGAG
771634 AGATAAGTAGGGATGGGCAGGGGTAGGCAAGGGGTACTTGGTAGAGTGAAATGAGGACTGTTGTC
1 AGATAAGTAGGGATGGGCAGGGGTAGGCAAGGGGTACTTGGTAGAGTGAAATGAGGACTGTTGTC
771699 GAATAGATTGTGAA
66 GAATAGATTGTGAA
771713 AGATAAGTAGGGATGGGCAGGGGTAGGCAA-GGGTACTTGGTAGAGTGAAATGAGGACTGTTGTC
1 AGATAAGTAGGGATGGGCAGGGGTAGGCAAGGGGTACTTGGTAGAGTGAAATGAGGACTGTTGTC
771777 GAATAGATTGTGAA
66 GAATAGATTGTGAA
771791 CGGGTGTTTG
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 48 0.62
79 30 0.38
ACGTcount: A:0.31, C:0.06, G:0.40, T:0.23
Consensus pattern (79 bp):
AGATAAGTAGGGATGGGCAGGGGTAGGCAAGGGGTACTTGGTAGAGTGAAATGAGGACTGTTGTC
GAATAGATTGTGAA
Found at i:776523 original size:98 final size:98
Alignment explanation
Indices: 776264--776502 Score: 408
Period size: 98 Copynumber: 2.4 Consensus size: 98
776254 TTTTTGATTG
* *
776264 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGGGGTGGGAGTGTCCCCGACAATGATAATTTA
1 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGGTTGGAGTGTCCCCGACAATGATAATTTA
776329 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
66 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
*
776362 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGATTGGAGTGTCCCCGACAATGATAATTTA
1 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGGTTGGAGTGTCCCCGACAATGATAATTTA
776427 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
66 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
* * * *
776460 -AAAATGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTAGAGT
1 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGGTTGGAGT
776503 ATCCTCGATG
Statistics
Matches: 133, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
97 38 0.29
98 95 0.71
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (98 bp):
AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGGTTGGAGTGTCCCCGACAATGATAATTTA
GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
Found at i:778790 original size:89 final size:89
Alignment explanation
Indices: 778628--778799 Score: 260
Period size: 90 Copynumber: 1.9 Consensus size: 89
778618 TTTTAACTAG
*
778628 ATGTATCGATACATTAAAAAATATTGATACATCTTGGTAAAAAGACAAAATGTATCGATAAATTG
1 ATGTATCGATACATTAAAAAATATCGATACATCTTGGTAAAAAGACAAAATGTATCGATAAATTG
778693 AAGAATGTATCGATACATTCATAC
66 AAGAATGTATCGATACATTCATAC
* * *
778717 ATGTATCGATACATTGAAAAATATATCGATACAT-TTGGGT-AAAAGATAGAATGTATCGATACA
1 ATGTATCGATACATT-AAAAA-ATATCGATACATCTT-GGTAAAAAGACAAAATGTATCGATAAA
778780 TTGAA-AATGTATCGATACAT
63 TTGAAGAATGTATCGATACAT
778800 CTCGGTAAAA
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
89 30 0.39
90 32 0.42
91 14 0.18
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (89 bp):
ATGTATCGATACATTAAAAAATATCGATACATCTTGGTAAAAAGACAAAATGTATCGATAAATTG
AAGAATGTATCGATACATTCATAC
Found at i:778809 original size:23 final size:19
Alignment explanation
Indices: 778674--778751 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 19
778664 GTAAAAAGAC
*
778674 AAAATGTATCGATAAATTG
1 AAAATGTATCGATACATTG
*
778693 AAGAATGTATCGATACATTC
1 AA-AATGTATCGATACATTG
*
778713 ATACATGTATCGATACATTG
1 A-AAATGTATCGATACATTG
*
778733 AAAAATATATCGATACATT
1 -AAAATGTATCGATACATT
778752 TGGGTAAAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.04
20 46 0.92
21 2 0.04
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.32
Consensus pattern (19 bp):
AAAATGTATCGATACATTG
Found at i:779827 original size:28 final size:27
Alignment explanation
Indices: 779787--780205 Score: 390
Period size: 28 Copynumber: 14.9 Consensus size: 27
779777 GTTTCGAGTA
*
779787 CCACTAACTTGTGGGCTTTAAAATGGTG
1 CCACTGACTTGTGGGCTTTAAAA-GGTG
* *
779815 CCACTAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
779843 CCACTAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
779871 CCACTAACTTGTGGGCTTTGAGAGAGGTTG
1 CCACTGACTTGTGGGCTTT-A-AAAGG-TG
*
779901 CCACCGACTTGTGTGGC-TTAAAAGGGTG
1 CCACTGACTTGTG-GGCTTTAAAA-GGTG
* * * *
779929 CCACTAATTTGTGGGCTTTGAGAATGATG
1 CCACTGACTTGTGGGCTTT-A-AAAGGTG
**
779958 CCACTGACTCATGGGCTTTGAAAAGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
779986 CCACTGACTTGTGAGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
* * *
780014 CCACTGACATGTGGGTTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
*
780042 CCACTGACTTGTGGGCTTTGAAAAGATG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
780070 CCACTGACTTGTGGGCTTTGAATGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
* * *
780098 CCACTAACTTATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
* *
780126 CCAGTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
*
780154 CCACTGACTTGTGGGCTTTGAGAAGGATG
1 CCACTGACTTGTGGGCTTT-AAAAGG-TG
* *
780183 CCACTGACTTGTGGACTCTAAAA
1 CCACTGACTTGTGGGCTTTAAAA
780206 AGGGTCGTAT
Statistics
Matches: 334, Mismatches: 45, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
27 11 0.03
28 245 0.73
29 58 0.17
30 17 0.05
31 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (27 bp):
CCACTGACTTGTGGGCTTTAAAAGGTG
Found at i:779873 original size:56 final size:56
Alignment explanation
Indices: 779787--780196 Score: 543
Period size: 56 Copynumber: 7.2 Consensus size: 56
779777 GTTTCGAGTA
* * * *
779787 CCACTAACTTGTGGGCTTTAAAATGGTGCCACTAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* *
779843 CCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAGAGAGGTTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGA-A-AGGATG
* * * *
779901 CCACCGACTTGTGTGGC-TTAAAAGGGTGCCACTAATTTGTGGGCTTTGAGAATGATG
1 CCACTGACTTGTG-GGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGA-AAGGATG
** * * *
779958 CCACTGACTCATGGGCTTTGAAAAGGTGCCACTGACTTGTGAGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* * * *
780014 CCACTGACATGTGGGTTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* * *
780070 CCACTGACTTGTGGGCTTTGAATGGATGCCACTAACTTATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* * *
780126 CCAGTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGA-AAGGATG
780183 CCACTGACTTGTGG
1 CCACTGACTTGTGG
780197 ACTCTAAAAA
Statistics
Matches: 312, Mismatches: 37, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
56 199 0.64
57 62 0.20
58 48 0.15
59 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (56 bp):
CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
Found at i:780074 original size:84 final size:84
Alignment explanation
Indices: 779787--780196 Score: 518
Period size: 84 Copynumber: 4.8 Consensus size: 84
779777 GTTTCGAGTA
* * * *
779787 CCACTAACTTGTGGGCTTT-AAAATGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAAC
1 CCACTGACTTGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAAC
*
779851 TTGTGGGCTTTGAAAGGGTG
65 TTGTGGGCTTTGAAAGGATG
* * * * * *
779871 CCACTAACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTGTGTGGC-TTAAAAGGGTGCCACTA
1 CCACTGACTTGTGGGCTTTGA-A-AAGATGCCACTGACTTGTG-GGCTTTGAAAGGATGCCACTA
* *
779935 ATTTGTGGGCTTTGAGAATGATG
63 ACTTGTGGGCTTTGA-AAGGATG
** * * * *
779958 CCACTGACTCATGGGCTTTGAAAAGGTGCCACTGACTTGTGAGCTTTGAAAGGATGCCACTGACA
1 CCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
780023 TGTGGGTTTTGAAAGGGTG
66 TGTGGGCTTTGAAAGGATG
*
780042 CCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAATGGATGCCACTAACT
1 CCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
780107 TATGGGCTTTGAAAGGATG
66 TGTGGGCTTTGAAAGGATG
* * *
780126 CCAGTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGAC
1 CCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAAC
780191 TTGTGG
65 TTGTGG
780197 ACTCTAAAAA
Statistics
Matches: 281, Mismatches: 38, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
84 147 0.52
85 61 0.22
86 46 0.16
87 27 0.10
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (84 bp):
CCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
TGTGGGCTTTGAAAGGATG
Found at i:804860 original size:158 final size:156
Alignment explanation
Indices: 804543--805015 Score: 562
Period size: 158 Copynumber: 3.0 Consensus size: 156
804533 GCTAAGTTCA
* * * **
804543 AAAAAATTATGAAAATGCCCTTAGGGGATACCTTCGACGTAGAAAGTACCCGATACCTTTAAA-A
1 AAAAAATTATGAAAATGCCCATAGGGGATACTTTCGACGTAGAAAGTACTCGATACCCCTAAAGA
* * *
804607 GACTTAAAAATGATTATAAATGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAA
66 -ACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAGA
* * * *
804672 C-CTGGTGACAATCTATGACTCGATTCT
130 CTC-GGTGACAACCTAGGATTCAATTCT
** * *
804699 AAAAAATTACCAAAATGCCCATAGGGGATATTTTCGACGTAGAAGAGTGCTCGATACCCCTAAAG
1 AAAAAATTATGAAAATGCCCATAGGGGATACTTTCGACGTAGAA-AGTACTCGATACCCCTAAAG
* * *
804764 AACTTAAAAAGGATTATAAATTGGGATGAACTTATCCTAAATACTCACCTTCAGTATAAAAGCAG
65 AACTTAAAAAGGATTATAAA-TGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAG
* *
804829 ACTCGGTAACAACCTAGGATTCAATTTT
129 ACTCGGTGACAACCTAGGATTCAATTCT
* ** * *
804857 AAAAAATTATGAAAATACCCCCAGGGGATACTTTCGACGTAG-AAGTACTCGATACCCCCAAAGG
1 AAAAAATTATGAAAATGCCCATAGGGGATACTTTCGACGTAGAAAGTACTCGATACCCCTAAAGA
* * * *
804921 ACTTAACAAGGA-TATAGATGGGATGAGCCTATCCTAAAT-CTCACCTTCGGCATAAAAG-TGCA
66 ACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAG-A
* **
804983 CTCAGTGACAACCTAGGATTCGGTTCT
130 CTCGGTGACAACCTAGGATTCAATTCT
805010 AAAAAA
1 AAAAAA
805016 ATTTCAAAAA
Statistics
Matches: 270, Mismatches: 42, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
152 1 0.00
153 46 0.17
154 19 0.07
155 5 0.02
156 68 0.25
157 34 0.13
158 96 0.36
159 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (156 bp):
AAAAAATTATGAAAATGCCCATAGGGGATACTTTCGACGTAGAAAGTACTCGATACCCCTAAAGA
ACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACTCACCTTCGGCATAAAAGCAGAC
TCGGTGACAACCTAGGATTCAATTCT
Found at i:806341 original size:38 final size:37
Alignment explanation
Indices: 806293--806367 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 37
806283 GAACTCAATG
*
806293 ATCGATACATTATGGA-TGTATCGATACATTTATGATGT
1 ATCGATACATTATGAATTGTATCGATA-ATTTAT-ATGT
*
806331 ATCGATACATTTTGAATTGTATCGATAATTTATATGT
1 ATCGATACATTATGAATTGTATCGATAATTTATATGT
806368 GTACCGATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 4 0.12
38 20 0.59
39 10 0.29
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (37 bp):
ATCGATACATTATGAATTGTATCGATAATTTATATGT
Found at i:806361 original size:19 final size:19
Alignment explanation
Indices: 806293--806367 Score: 95
Period size: 19 Copynumber: 4.0 Consensus size: 19
806283 GAACTCAATG
806293 ATCGATACA-TTATGGATGT
1 ATCGATACATTTAT-GATGT
806312 ATCGATACATTTATGATGT
1 ATCGATACATTTATGATGT
806331 ATCGATACATTT-TGAATTGT
1 ATCGATACATTTATG-A-TGT
806351 ATCGATA-ATTTAT-ATGT
1 ATCGATACATTTATGATGT
806368 GTACCGATAC
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.06
18 3 0.06
19 31 0.60
20 15 0.29
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (19 bp):
ATCGATACATTTATGATGT
Found at i:806370 original size:19 final size:19
Alignment explanation
Indices: 806309--806378 Score: 74
Period size: 19 Copynumber: 3.6 Consensus size: 19
806299 ACATTATGGA
806309 TGTATCGATACA-TTTATG
1 TGTATCGATACATTTTATG
806327 ATGTATCGATACATTTTGAAT-
1 -TGTATCGATACATTTT--ATG
806348 TGTATCGATA-ATTTATATG
1 TGTATCGATACATTT-TATG
*
806367 TGTACCGATACA
1 TGTATCGATACA
806379 AATAAGGGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 11
0.79 0.02 0.20
Matches are distributed among these distances:
18 2 0.05
19 25 0.57
20 15 0.34
22 2 0.05
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTATG
Found at i:806376 original size:39 final size:38
Alignment explanation
Indices: 806295--806378 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 38
806285 ACTCAATGAT
* *
806295 CGATACATTATGGATGTATCGATACATTTATGATGTAT
1 CGATACATTATGAATGTATCGATACATTTATGATGTAC
*
806333 CGATACATTTTGAATTGTATCGATA-ATTTAT-ATGTGTAC
1 CGATACATTATGAA-TGTATCGATACATTTATGA--TGTAC
806372 CGATACA
1 CGATACA
806379 AATAAGGGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
37 1 0.03
38 18 0.45
39 21 0.52
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (38 bp):
CGATACATTATGAATGTATCGATACATTTATGATGTAC
Found at i:806462 original size:21 final size:21
Alignment explanation
Indices: 806419--806474 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
806409 GCCAATAAAG
* * *
806419 TGTATCGATACA-ATACATTA
1 TGTATCAATACATTTACATAA
*
806439 TGTATCAATATATTTACATAA
1 TGTATCAATACATTTACATAA
*
806460 TGTATCGATACATTT
1 TGTATCAATACATTT
806475 CAACTTGTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 10 0.34
21 19 0.66
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (21 bp):
TGTATCAATACATTTACATAA
Found at i:813229 original size:98 final size:98
Alignment explanation
Indices: 813060--813291 Score: 410
Period size: 98 Copynumber: 2.4 Consensus size: 98
813050 TTTTTGATTG
* *
813060 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGGGGTGGGAGTGTCCCCGACAATGATAATTTA
1 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGATGGGAGTGTCCCCGACAATGATAATTTA
813125 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
66 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
*
813158 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGATTGGAGTGTCCCCGACAATGATAATTTA
1 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGATGGGAGTGTCCCCGACAATGATAATTTA
813223 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
66 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
* * *
813256 AAAAATGGGGTTGGAGTATCCCCTCGGAGGAATGAG
1 AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAG
813292 GTTAGAGTAT
Statistics
Matches: 128, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 128 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (98 bp):
AAAAACGAGGTTGGAGTATCCCCTTGGAGGAATGAGATGGGAGTGTCCCCGACAATGATAATTTA
GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
Found at i:815614 original size:90 final size:91
Alignment explanation
Indices: 815440--815614 Score: 273
Period size: 90 Copynumber: 1.9 Consensus size: 91
815430 TTTTAACTAG
*
815440 ATGTATCGATACATTAAAAAATATATTGATACATCTTGGTAAAAAGACAAAATGTATCGATAAAT
1 ATGTATCGATACATTAAAAAATATATCGATACATCTTGGTAAAAAGACAAAATGTATCGATAAAT
*
815505 TGAAGAATGTATCGATACATTCATAC
66 TGAAAAATGTATCGATACATTCATAC
* * * *
815531 ATGTATCGATACATTGAAAAATATATCGATACAT-TTGGGT-AAAAGATAGAATGTATCGATACA
1 ATGTATCGATACATTAAAAAATATATCGATACATCTT-GGTAAAAAGACAAAATGTATCGATAAA
815594 TTGAAAAATGTATCGATACAT
65 TTGAAAAATGTATCGATACAT
815615 CTCGGTAAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
90 42 0.55
91 35 0.45
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (91 bp):
ATGTATCGATACATTAAAAAATATATCGATACATCTTGGTAAAAAGACAAAATGTATCGATAAAT
TGAAAAATGTATCGATACATTCATAC
Found at i:815627 original size:24 final size:20
Alignment explanation
Indices: 815488--815614 Score: 110
Period size: 20 Copynumber: 5.8 Consensus size: 20
815478 GTAAAAAGAC
*
815488 AAAATGTATCGATAAATTGA
1 AAAATGTATCGATACATTGA
* *
815508 AGAATGTATCGATACATTCA
1 AAAATGTATCGATACATTGA
* *
815528 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTGA
*
815548 AAAATATATCGATACATTTGGGTAAAA
1 AAAATGTATCGATACA-TT--G----A
815575 GATAGAATGTATCGATACATTGA
1 -A-A-AATGTATCGATACATTGA
815598 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
815615 CTCGGTAAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
20 61 0.71
21 3 0.03
22 1 0.01
23 2 0.02
27 2 0.02
28 1 0.01
29 3 0.03
30 13 0.15
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (20 bp):
AAAATGTATCGATACATTGA
Found at i:816647 original size:28 final size:27
Alignment explanation
Indices: 816607--817026 Score: 383
Period size: 28 Copynumber: 14.9 Consensus size: 27
816597 GTTTCGAGTA
*
816607 CCACTAACTTGTGGGCTTTAAAATGGTG
1 CCACTGACTTGTGGGCTTTAAAA-GGTG
* *
816635 CCACTAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
816663 CCACTAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
816691 CCACTAACTTGTGGGCTTTGAGAGAGGTTG
1 CCACTGACTTGTGGGCTTT-A-AAAGG-TG
*
816721 CCACCGACTTGTGTGGGC-TTAAAAGGGTG
1 CCACTGAC-T-TGTGGGCTTTAAAA-GGTG
* * * *
816750 CCACTAATTTGTGGGCTTTGAGAATGATG
1 CCACTGACTTGTGGGCTTT-A-AAAGGTG
**
816779 CCACTGACTCATGGGCTTTGAAAAGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
816807 CCACTGACTTGTGAGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
* * *
816835 CCACTGACATGTGGGTTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
*
816863 CCACTGACTTGTGGGCTTTGAAAAGATG
1 CCACTGACTTGTGGGCTTT-AAAAGGTG
* *
816891 CCACTGACTTGTGGGCTTTGAATGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
* * *
816919 CCACTAACTTATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
* *
816947 CCAGTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGG-TG
*
816975 CCACTGACTTGTGGGCTTTGAGAAGGATG
1 CCACTGACTTGTGGGCTTT-AAAAGG-TG
* *
817004 CCACTGACTTGTGGACTCTAAAA
1 CCACTGACTTGTGGGCTTTAAAA
817027 AGGGTCGTAT
Statistics
Matches: 334, Mismatches: 45, Indels: 26
0.82 0.11 0.06
Matches are distributed among these distances:
27 15 0.04
28 232 0.69
29 64 0.19
30 13 0.04
31 3 0.01
32 7 0.02
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (27 bp):
CCACTGACTTGTGGGCTTTAAAAGGTG
Found at i:816693 original size:56 final size:56
Alignment explanation
Indices: 816607--817017 Score: 536
Period size: 56 Copynumber: 7.2 Consensus size: 56
816597 GTTTCGAGTA
* * * *
816607 CCACTAACTTGTGGGCTTTAAAATGGTGCCACTAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* *
816663 CCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAGAGAGGTTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGA-A-AGGATG
* * * *
816721 CCACCGACTTGTGTGGGC-TTAAAAGGGTGCCACTAATTTGTGGGCTTTGAGAATGATG
1 CCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGA-AAGGATG
** * * *
816779 CCACTGACTCATGGGCTTTGAAAAGGTGCCACTGACTTGTGAGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* * * *
816835 CCACTGACATGTGGGTTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* * *
816891 CCACTGACTTGTGGGCTTTGAATGGATGCCACTAACTTATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
* * *
816947 CCAGTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGA-AAGGATG
817004 CCACTGACTTGTGG
1 CCACTGACTTGTGG
817018 ACTCTAAAAA
Statistics
Matches: 312, Mismatches: 37, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
56 201 0.64
57 49 0.16
58 22 0.07
59 33 0.11
60 7 0.02
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (56 bp):
CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGATG
Found at i:816885 original size:84 final size:84
Alignment explanation
Indices: 816607--817017 Score: 522
Period size: 84 Copynumber: 4.8 Consensus size: 84
816597 GTTTCGAGTA
* * *
816607 CCACTAACTTGTGGGCTTT-AAAATGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAAC
1 CCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAAC
*
816671 TTGTGGGCTTTGAAAGGGTG
65 TTGTGGGCTTTGAAAGGATG
* * * * *
816691 CCACTAACTTGTGGGCTTTGAGAGAGGTTGCCACCGACTTGTGTGGGC-TTAAAAGGGTGCCACT
1 CCACTGACTTGTGGGCTTTGA-AAAGG-TGCCACTGAC-T-TGTGGGCTTTGAAAGGATGCCACT
* *
816755 AATTTGTGGGCTTTGAGAATGATG
62 AACTTGTGGGCTTTGA-AAGGATG
** * * *
816779 CCACTGACTCATGGGCTTTGAAAAGGTGCCACTGACTTGTGAGCTTTGAAAGGATGCCACTGACA
1 CCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
816844 TGTGGGTTTTGAAAGGGTG
66 TGTGGGCTTTGAAAGGATG
* *
816863 CCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAATGGATGCCACTAACT
1 CCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
816928 TATGGGCTTTGAAAGGATG
66 TGTGGGCTTTGAAAGGATG
* *
816947 CCAGTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACTGA
1 CCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAA
817011 CTTGTGG
64 CTTGTGG
817018 ACTCTAAAAA
Statistics
Matches: 282, Mismatches: 36, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
83 4 0.01
84 146 0.52
85 48 0.17
86 19 0.07
87 35 0.12
88 30 0.11
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (84 bp):
CCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
TGTGGGCTTTGAAAGGATG
Found at i:834168 original size:32 final size:30
Alignment explanation
Indices: 834047--834203 Score: 120
Period size: 32 Copynumber: 5.0 Consensus size: 30
834037 CCTTACAACA
* *
834047 CTATCTTTCA-AGGCTAAGATAGAAACTTCC
1 CTATCTTTTACAGGCTAAGATAG-AACCTCC
* * *
834077 CTATTTTTTCACAGGTTAAGATAAAACCTCTTCC
1 CTATCTTTT-ACAGGCTAAGATAGAA-C-C-TCC
*
834111 CTATCTTTTGCAGGCTAAGATAGAACCTCC
1 CTATCTTTTACAGGCTAAGATAGAACCTCC
* *
834141 CTATCTTTTACAAAGGCTAAGCTAGAACCTCTA
1 CTATCTTTTAC--AGGCTAAGATAGAACCTC-C
* *
834174 C-ACTCTTTTTCAAGACTAAGATAGAACCTC
1 CTA-TCTTTTAC-AGGCTAAGATAGAACCTC
834204 TTAATCACTT
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
30 20 0.19
31 4 0.04
32 47 0.46
33 21 0.20
34 11 0.11
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (30 bp):
CTATCTTTTACAGGCTAAGATAGAACCTCC
Found at i:834170 original size:65 final size:63
Alignment explanation
Indices: 834055--834203 Score: 165
Period size: 65 Copynumber: 2.3 Consensus size: 63
834045 CACTATCTTT
* * * * * *
834055 CAAGGCTAAGATAGAAACTTCCCTATTTTTTCACAGGTTAAGATAAAACCTCTTCCCTATCTTTT
1 CAAGGCTAAGATAG-AACCTCCCTATTTTTACAAAGGCTAAGATAAAACCTCTACAC--TCTTTT
834120 G
63 G
* * *
834121 C-AGGCTAAGATAGAACCTCCCTATCTTTTACAAAGGCTAAGCTAGAACCTCTACACTCTTTTT
1 CAAGGCTAAGATAGAACCTCCCTAT-TTTTACAAAGGCTAAGATAAAACCTCTACACTCTTTTG
*
834184 CAAGACTAAGATAGAACCTC
1 CAAGGCTAAGATAGAACCTC
834204 TTAATCACTT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
63 7 0.10
64 27 0.38
65 36 0.51
66 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (63 bp):
CAAGGCTAAGATAGAACCTCCCTATTTTTACAAAGGCTAAGATAAAACCTCTACACTCTTTTG
Found at i:835218 original size:36 final size:36
Alignment explanation
Indices: 835167--835241 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
835157 GTTATTCTTG
* *
835167 TAACTAATGCCAAAAGTTTTTGCAAGCTCTCCCCCT
1 TAACTAATACCAAAAGTTTATGCAAGCTCTCCCCCT
*
835203 TAACTAATACTAAAAGTTTATGCAAGCTCTCCCCCT
1 TAACTAATACCAAAAGTTTATGCAAGCTCTCCCCCT
835239 TAA
1 TAA
835242 TACAAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (36 bp):
TAACTAATACCAAAAGTTTATGCAAGCTCTCCCCCT
Found at i:836209 original size:19 final size:19
Alignment explanation
Indices: 836185--836245 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
836175 ACTGAAGCAA
836185 TGTATCGATACATTAAAAT
1 TGTATCGATACATTAAAAT
836204 TGTATCGAT--A-T---AT
1 TGTATCGATACATTAAAAT
*
836217 TGTATTGATACATTAAAAT
1 TGTATCGATACATTAAAAT
836236 TGTATCGATA
1 TGTATCGATA
836246 TAACTTTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
13 10 0.29
15 1 0.03
16 2 0.06
17 1 0.03
19 20 0.59
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTAAAAT
Found at i:836227 original size:32 final size:32
Alignment explanation
Indices: 836185--836247 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
836175 ACTGAAGCAA
836185 TGTATCGATACATTAAAATTGTATCGATATAT
1 TGTATCGATACATTAAAATTGTATCGATATAT
*
836217 TGTATTGATACATTAAAATTGTATCGATATA
1 TGTATCGATACATTAAAATTGTATCGATATA
836248 ACTTTCTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATTAAAATTGTATCGATATAT
Found at i:841481 original size:13 final size:13
Alignment explanation
Indices: 841463--841488 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
841453 CAGGGCAACT
841463 TTGTATCGATACA
1 TTGTATCGATACA
841476 TTGTATCGATACA
1 TTGTATCGATACA
841489 ACACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:842892 original size:33 final size:31
Alignment explanation
Indices: 842814--842959 Score: 127
Period size: 32 Copynumber: 4.5 Consensus size: 31
842804 TTATCTTCCA
*
842814 AGGCTAAGATAGAAAC-CTCCCTATCTTTTC
1 AGGCTAAGATAGAACCTCTCCCTATCTTTTC
842844 ACGGGCTAAGATAGAACCTCATCCCTATCTTTTGC
1 A--GGCTAAGATAGAACCTC-TCCCTATCTTTT-C
*
842879 AGGTTAAGATAGAACCTCT--CTATCTTTTAC
1 AGGCTAAGATAGAACCTCTCCCTATCTTTT-C
* ** *
842909 AAAGGCTAAGATAGAACCTTTATACTATCTTTTA
1 --AGGCTAAGATAGAACCTCT-CCCTATCTTTTC
* *
842943 AGGATAAGATAAAACCT
1 AGGCTAAGATAGAACCT
842960 TTCAATCACT
Statistics
Matches: 98, Mismatches: 8, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
30 11 0.11
32 47 0.48
33 17 0.17
34 12 0.12
35 11 0.11
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (31 bp):
AGGCTAAGATAGAACCTCTCCCTATCTTTTC
Found at i:842937 original size:65 final size:63
Alignment explanation
Indices: 842813--842959 Score: 170
Period size: 65 Copynumber: 2.3 Consensus size: 63
842803 ATTATCTTCC
* ** *
842813 AAGGCTAAGATAGAAACCTCCCTATCTTTTCACGGGCTAAGATAGAACCTCATCCCTATCTTTT
1 AAGGATAAGATAG-AACCTCCCTATCTTTTCAAAGGCTAAGATAGAACCTCATCACTATCTTTT
* * * *
842877 GCAGGTTAAGATAGAACCTCTCTATCTTTTACAAAGGCTAAGATAGAACCTTTAT-ACTATCTTT
1 -AAGGATAAGATAGAACCTCCCTATCTTTT-CAAAGGCTAAGATAGAACC-TCATCACTATCTTT
842941 T
63 T
*
842942 AAGGATAAGATAAAACCT
1 AAGGATAAGATAGAACCT
842960 TTCAATCACT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
64 30 0.43
65 37 0.53
66 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (63 bp):
AAGGATAAGATAGAACCTCCCTATCTTTTCAAAGGCTAAGATAGAACCTCATCACTATCTTTT
Found at i:843423 original size:20 final size:20
Alignment explanation
Indices: 843407--843444 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
843397 CCGATACATA
843407 TCACCATGTATCAATACAAT
1 TCACCATGTATCAATACAAT
* *
843427 TCATCATGTATCGATACA
1 TCACCATGTATCAATACA
843445 GTGTATCGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (20 bp):
TCACCATGTATCAATACAAT
Found at i:843449 original size:13 final size:13
Alignment explanation
Indices: 843433--843457 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
843423 CAATTCATCA
843433 TGTATCGATACAG
1 TGTATCGATACAG
843446 TGTATCGATACA
1 TGTATCGATACA
843458 AAGTGAGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:843649 original size:20 final size:21
Alignment explanation
Indices: 843626--843667 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
843616 GACACTTTGA
843626 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
843646 ATTATTTTTATGCTTGAAAAAC
1 ATTATTTTTA-GCTTGAAAAAC
843668 CTCTATACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
22 10 0.50
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:845626 original size:20 final size:21
Alignment explanation
Indices: 845601--845655 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
845591 GTATCGATAC
**
845601 AATGTATCGATACATGACCA-
1 AATGTATCGATACATGAAAAG
*
845621 AATGTATCGATACTTGAAAAG
1 AATGTATCGATACATGAAAAG
845642 AATGTATCGATACA
1 AATGTATCGATACA
845656 GGTCATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAG
Found at i:845728 original size:32 final size:33
Alignment explanation
Indices: 845687--845754 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
845677 GTAGCCAAAT
*
845687 TTGTATCGATACA-CACAATATGTATCAATACA
1 TTGTATCGATACATCACAAAATGTATCAATACA
* *
845719 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACATCACAAAATGTATCAATACA
845752 TTG
1 TTG
845755 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACATCACAAAATGTATCAATACA
Found at i:846266 original size:264 final size:264
Alignment explanation
Indices: 845796--846312 Score: 1034
Period size: 264 Copynumber: 2.0 Consensus size: 264
845786 AAATACATGT
845796 ATCGATACATCACAAATTGTATCGATACATTTACACGGGATTGCATTAAAATAAGCTCCAACAAG
1 ATCGATACATCACAAATTGTATCGATACATTTACACGGGATTGCATTAAAATAAGCTCCAACAAG
845861 TCAACAACGGCTATAAACTCCACCAATCAATCTCCAACGGCTACAATAACATTGAAGCCTATAAA
66 TCAACAACGGCTATAAACTCCACCAATCAATCTCCAACGGCTACAATAACATTGAAGCCTATAAA
845926 TAAGAGCTTCCAGCAGCAAAACACAAGAAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTC
131 TAAGAGCTTCCAGCAGCAAAACACAAGAAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTC
845991 AAAGATCAAAGAGTTTATATTTTTCAAGAGCTTTTGCTTTTATTGTCATTATTTTCAACGGCTAT
196 AAAGATCAAAGAGTTTATATTTTTCAAGAGCTTTTGCTTTTATTGTCATTATTTTCAACGGCTAT
846056 AAAC
261 AAAC
846060 ATCGATACATCACAAATTGTATCGATACATTTACACGGGATTGCATTAAAATAAGCTCCAACAAG
1 ATCGATACATCACAAATTGTATCGATACATTTACACGGGATTGCATTAAAATAAGCTCCAACAAG
846125 TCAACAACGGCTATAAACTCCACCAATCAATCTCCAACGGCTACAATAACATTGAAGCCTATAAA
66 TCAACAACGGCTATAAACTCCACCAATCAATCTCCAACGGCTACAATAACATTGAAGCCTATAAA
846190 TAAGAGCTTCCAGCAGCAAAACACAAGAAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTC
131 TAAGAGCTTCCAGCAGCAAAACACAAGAAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTC
846255 AAAGATCAAAGAGTTTATATTTTTCAAGAGCTTTTGCTTTTATTGTCATTATTTTCAA
196 AAAGATCAAAGAGTTTATATTTTTCAAGAGCTTTTGCTTTTATTGTCATTATTTTCAA
846313 AGCTCTTTTG
Statistics
Matches: 253, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
264 253 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (264 bp):
ATCGATACATCACAAATTGTATCGATACATTTACACGGGATTGCATTAAAATAAGCTCCAACAAG
TCAACAACGGCTATAAACTCCACCAATCAATCTCCAACGGCTACAATAACATTGAAGCCTATAAA
TAAGAGCTTCCAGCAGCAAAACACAAGAAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTC
AAAGATCAAAGAGTTTATATTTTTCAAGAGCTTTTGCTTTTATTGTCATTATTTTCAACGGCTAT
AAAC
Found at i:851914 original size:13 final size:13
Alignment explanation
Indices: 851896--851920 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
851886 CATAAAGTGT
851896 TGTATCGATACAA
1 TGTATCGATACAA
851909 TGTATCGATACA
1 TGTATCGATACA
851921 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:851936 original size:32 final size:33
Alignment explanation
Indices: 851876--851944 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
851866 TTCAATGATT
851876 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
851909 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
851941 TGTA
1 TGTA
851945 AGCTACTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 22 0.63
33 13 0.37
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:852000 original size:13 final size:13
Alignment explanation
Indices: 851982--852006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
851972 ATTACTAAAA
851982 TGTATCGATACAT
1 TGTATCGATACAT
851995 TGTATCGATACA
1 TGTATCGATACA
852007 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:852056 original size:52 final size:52
Alignment explanation
Indices: 851995--852140 Score: 233
Period size: 52 Copynumber: 2.8 Consensus size: 52
851985 ATCGATACAT
**
851995 TGTATCGATACACTGAT-CTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-ATAAATTGTATCGATACATGCAGGCAAATTTGCCCAGA
*
852047 TGTATCGATACACTATAAATTGTATCGATACATACAGGCAAATTTGCCCAGA
1 TGTATCGATACACTATAAATTGTATCGATACATGCAGGCAAATTTGCCCAGA
852099 TGTATCGATACACTATGAAA-TGTATCGATACATGCAGGCAAA
1 TGTATCGATACACTAT-AAATTGTATCGATACATGCAGGCAAA
852141 ATTTCATATT
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.94
53 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACACTATAAATTGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:855905 original size:20 final size:20
Alignment explanation
Indices: 855870--855911 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
855860 CAAATTTCTT
855870 ATTTTTCACTTCAAAATACATC
1 ATTTTTCAC-TCAAAAT-CATC
855892 ATTTTTCA-TCAAAATCATC
1 ATTTTTCACTCAAAATCATC
855911 A
1 A
855912 ACAAAAACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTTTCACTCAAAATCATC
Found at i:858228 original size:20 final size:21
Alignment explanation
Indices: 858203--858257 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
858193 GTATCGATAC
**
858203 AATGTATCGATACATGACCA-
1 AATGTATCGATACATGAAAAG
*
858223 AATGTATCGATACTTGAAAAG
1 AATGTATCGATACATGAAAAG
858244 AATGTATCGATACA
1 AATGTATCGATACA
858258 GGTCATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAG
Found at i:858333 original size:20 final size:20
Alignment explanation
Indices: 858290--858341 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
858280 TAGCCAAATT
*
858290 TGTATCGATACA-CACAATA
1 TGTATCGATACATCACAAAA
*
858309 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCACAAAA
*
858329 TGTATCTATACAT
1 TGTATCGATACAT
858342 TGGTTTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:860061 original size:25 final size:25
Alignment explanation
Indices: 860033--860086 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
860023 TTACGCATGA
*
860033 TTTTTT-CATTTTTTATTCCTTTTTC
1 TTTTTTAC-TTTTTTATTCATTTTTC
* *
860058 TTTTTTACTTTTTTTTTTATTTTTC
1 TTTTTTACTTTTTTATTCATTTTTC
860083 TTTT
1 TTTT
860087 CTTTAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.81
Consensus pattern (25 bp):
TTTTTTACTTTTTTATTCATTTTTC
Found at i:862182 original size:44 final size:44
Alignment explanation
Indices: 862099--862182 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
862089 AGACATAACA
* * * * *
862099 AGTTTGACTAGGGCTAAACCATCACGTCTAACGGTAATGAAAAG
1 AGTTAGACGAGGGCTAAACCATCACGTCAAACAGAAATGAAAAG
**
862143 AGTTAGACGAGGGCTAAATGATCACGTCAAACAGAAATGA
1 AGTTAGACGAGGGCTAAACCATCACGTCAAACAGAAATGA
862183 GTGGAGTTTG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (44 bp):
AGTTAGACGAGGGCTAAACCATCACGTCAAACAGAAATGAAAAG
Found at i:862270 original size:35 final size:34
Alignment explanation
Indices: 862230--862834 Score: 241
Period size: 35 Copynumber: 16.6 Consensus size: 34
862220 ATGAGGGTAA
*
862230 AAAGAGTTTGATCAGATACAATCAAATGATAATGG
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
* *
862265 GAAGAGTTTGACCAGATACAGTCAAATG--ATGG
1 AAAGAGTTTGACCAGATACAATCAAATGATATGG
* * * * * *
862297 TAAAAAGTTTGCCCAAATATAGTCAAACG--ATGG
1 -AAAGAGTTTGACCAGATACAATCAAATGATATGG
* *
862330 AAAGAGTTTGACCAGATACAATCAAATAATGGTGG
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
* * * * *
862365 AAAGGGTTTGACTAGATATAGTCAAACGATGATGG
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
862400 AAAGAGTTTGACCAGATACAATCAAACGATGGTGGAACGATAGTGG
1 AAAGAGTTTGACCAGATACAATC-AA--A---T-----GATA-TGG
* * *
862446 AAAGAGTTTAACAAGATACAATCAAATGATGGTGG
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
* *
862481 AAAGCA-TTTGACCATATACAGTCAATAGTGATGGACGATAATGG
1 AAAG-AGTTTGACCAGATACAATC-A-A---AT----GAT-ATGG
* * * * *
862525 GAAGAGTTTAACCAGATACAACCAAACGATGATGA
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
* * *
862560 AAAAAGTTTGACCAGATACAATTAAATGATGATAG
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
* * * * *
862595 CAAGAGTTTGACCAAATACAGTCAAATAATGGTGG
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
** * * * * *
862630 ATGGAGTTTGACCAAATATAGTCAAACGAT-GGG
1 AAAGAGTTTGACCAGATACAATCAAATGATATGG
* * *
862663 AAAAGAGTTTGACCATATACAACCAAACGATAGTGG
1 -AAAGAGTTTGACCAGATACAATCAAATGATA-TGG
* * *
862699 AAAGAGTTTGACCAAATATAGTCAAATGATGTTGGAAAATGATGG
1 AAAGAGTTTGACCAGATACAATC-AA--A---T-G---AT-ATGG
* * ** *
862744 AAAGAGTTTGACCAGATATAGTCAAAACAATGGTGG
1 AAAGAGTTTGACCAGATACAATC-AAATGAT-ATGG
* *
862780 AAAGAGTTTGACCAGATACAATCAAACGATGGTGG
1 AAAGAGTTTGACCAGATACAATCAAATGAT-ATGG
* *
862815 AAATAGTTTGACCAAATACA
1 AAAGAGTTTGACCAGATACA
862835 GCCAAACGAT
Statistics
Matches: 438, Mismatches: 90, Indels: 84
0.72 0.15 0.14
Matches are distributed among these distances:
32 25 0.06
33 28 0.06
34 24 0.05
35 230 0.53
36 35 0.08
37 1 0.00
38 2 0.00
39 1 0.00
40 3 0.01
42 2 0.00
43 4 0.01
44 22 0.05
45 33 0.08
46 28 0.06
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (34 bp):
AAAGAGTTTGACCAGATACAATCAAATGATATGG
Found at i:862301 original size:70 final size:70
Alignment explanation
Indices: 862213--863012 Score: 367
Period size: 70 Copynumber: 10.8 Consensus size: 70
862203 AATGCTAATG
* * * * *
862213 CAGTCAAATGAGGGTAAAAAGAGTTTGATCAGATACAATCAAATGATAATGGGAAGAGTTTGACC
1 CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATGATGGAAAGAGTTTGACC
862278 AGATA
66 AGATA
* * * *
862283 CAGTCAAATGATGGT-AAAA-AGTTTGCCCAAATATAGTCAAAC---GATGGAAAGAGTTTGACC
1 CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATGATGGAAAGAGTTTGACC
862343 AGATA
66 AGATA
* * ** * * * *
862348 CAATCAAATAATGGTGGAAAGGGTTTGACTAGATATAGTCAAACGATGATGGAAAGAGTTTGACC
1 CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATGATGGAAAGAGTTTGACC
862413 AGATA
66 AGATA
* * * * * *
862418 CAATCAAACGATGGTGGAACGATAGTGGAAAGAGTTTAACAAGATACAATCAAATGATGGTGGAA
1 CAGTCAAATGATGGT------A-A----AAAGAGTTTGACCAGATACAATCAAACGATGATGGAA
*
862483 AGCA-TTTGACCATATA
55 AG-AGTTTGACCAGATA
* * * * *
862499 CAGTCAATAGTGATGGACGATAATGGGAAGAGTTTAACCAGATACAACCAAACGATGATGAAAAA
1 CAGTCAA-A-TGAT-G--G-TAA---AAAGAGTTTGACCAGATACAATCAAACGATGATGGAAAG
862564 AGTTTGACCAGATA
57 AGTTTGACCAGATA
* * * ** * * ** * **
862578 CAATTAAATGATGATAGCAAGAGTTTGACCAAATACAGTCAAATAATGGTGGATGGAGTTTGACC
1 CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATGATGGAAAGAGTTTGACC
*
862643 AAATA
66 AGATA
* * * * *
862648 TAGTCAAACGATGG-GAAAAGAGTTTGACCATATACAACCAAACGAT-AGTGGAAAGAGTTTGAC
1 CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATGA-TGGAAAGAGTTTGAC
*
862711 CAAATA
65 CAGATA
* * * * * *
862717 TAGTCAAATGATGTTGGAAAATGATGGAAAGAGTTTGACCAGATATAGTCAAAACAATGGTGGAA
1 CAGTCAAATGA---TGG----T-A--AAAAGAGTTTGACCAGATACAATC-AAACGATGATGGAA
862782 AGAGTTTGACCAGATA
55 AGAGTTTGACCAGATA
* * ** * * **
862798 CAATCAAACGATGGTGGAAATAGTTTGACCAAATACAGCCAAACGATGATAAAAAATGATGAAAA
1 CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATG-------ATG--G-AAA
*
862863 GAGTTTGACTAGATA
56 GAGTTTGACCAGATA
* * * *
862878 TAGTCAAACGATGATGGAAAATGATGAAAAAAGTTTAACCAGATACAATCAAATGATGATAGG-A
1 CAGTC-AA--ATGATGG----T-A--AAAAGAGTTTGACCAGATACAATCAAACGATGAT-GGAA
862942 AGAGTTTGACCAGATA
55 AGAGTTTGACCAGATA
* ** ** * * * *
862958 CAATCAAACAATGGTGGAAAGAGTTTGAACAGAAACAGTCAAACGGTGATGGAAA
1 CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATGATGGAAA
863013 ATGACAAAAA
Statistics
Matches: 553, Mismatches: 117, Indels: 120
0.70 0.15 0.15
Matches are distributed among these distances:
65 34 0.06
66 3 0.01
67 19 0.03
68 17 0.03
69 59 0.11
70 134 0.24
71 20 0.04
72 3 0.01
73 3 0.01
74 1 0.00
76 1 0.00
77 11 0.02
78 5 0.01
79 54 0.10
80 59 0.11
81 86 0.16
82 3 0.01
83 11 0.02
84 2 0.00
86 1 0.00
87 2 0.00
90 25 0.05
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (70 bp):
CAGTCAAATGATGGTAAAAAGAGTTTGACCAGATACAATCAAACGATGATGGAAAGAGTTTGACC
AGATA
Found at i:862463 original size:46 final size:46
Alignment explanation
Indices: 862389--862482 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 46
862379 GATATAGTCA
* *
862389 AACGATGATGGAAAGAGTTTGACCAGATACAATCAAACGATGGTGG
1 AACGATGATGGAAAGAGTTTAACAAGATACAATCAAACGATGGTGG
*
862435 AACGAT-AGTGGAAAGAGTTTAACAAGATACAATCAAATGATGGTGG
1 AACGATGA-TGGAAAGAGTTTAACAAGATACAATCAAACGATGGTGG
862481 AA
1 AA
862483 AGCATTTGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
45 1 0.02
46 43 0.98
ACGTcount: A:0.43, C:0.11, G:0.27, T:0.20
Consensus pattern (46 bp):
AACGATGATGGAAAGAGTTTAACAAGATACAATCAAACGATGGTGG
Found at i:862570 original size:79 final size:81
Alignment explanation
Indices: 862387--862592 Score: 231
Period size: 79 Copynumber: 2.6 Consensus size: 81
862377 TAGATATAGT
* * * *
862387 CAAACGATGATGGAAAGAGTTTGACCAGATACAATCAAACGATGGTGGAACGATAGTGGAAAGAG
1 CAAACGATGATGAAAAAAGTTTGACCAGATACAATCAAACGATGATGGAACGATAATGGAAAGAG
*
862452 TTTAACAAGATACAAT
66 TTTAACAAGATACAAC
* * ** * * *
862468 CAAATGATGGTGGAAAGCA-TTTGACCATATACAGTCAATA-G-TGATGG-ACGATAATGGGAAG
1 CAAACGATGAT-GAAAAAAGTTTGACCAGATACAATCAA-ACGATGATGGAACGATAATGGAAAG
*
862529 AGTTTAACCAGATACAAC
64 AGTTTAACAAGATACAAC
* *
862547 CAAACGATGATGAAAAAAGTTTGACCAGATACAATTAAATGATGAT
1 CAAACGATGATGAAAAAAGTTTGACCAGATACAATCAAACGATGAT
862593 AGCAAGAGTT
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
78 6 0.06
79 54 0.53
80 9 0.09
81 27 0.27
82 5 0.05
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.22
Consensus pattern (81 bp):
CAAACGATGATGAAAAAAGTTTGACCAGATACAATCAAACGATGATGGAACGATAATGGAAAGAG
TTTAACAAGATACAAC
Found at i:862704 original size:104 final size:107
Alignment explanation
Indices: 862446--862840 Score: 325
Period size: 114 Copynumber: 3.6 Consensus size: 107
862436 ACGATAGTGG
* * * * *
862446 AAAGAGTTTAACAAGATACAATCAAATGATGGTGGAAAGCA-TTTGACCATATACAGTC-AATAG
1 AAAGAGTTTGACCAGATACAATCAAACGAT-GTGGAAAG-AGTTTGACCAAATACAGTCAAATAA
* * * * ** *
862509 TGATGGACGATAATGGGAAGAGTTTAACCAGATACAACCAAACGATGATGA
64 TGGTGGA-G---AT-GG-AGAGTTTGACCAAATATAGTCAAACGATG-GGA
* * * * *
862560 AAAAAGTTTGACCAGATACAATTAAATGATGATAGCAAGAGTTTGACCAAATACAGTCAAATAAT
1 AAAGAGTTTGACCAGATACAATCAAACGATG-TGGAAAGAGTTTGACCAAATACAGTCAAATAAT
862625 GGT-G-GAT-G-GAGTTTGACCAAATATAGTCAAACGATGGGA
65 GGTGGAGATGGAGAGTTTGACCAAATATAGTCAAACGATGGGA
* * * *
862664 AAAGAGTTTGACCATATACAACCAAACGATAGTGGAAAGAGTTTGACCAAATATAGTCAAATGAT
1 AAAGAGTTTGACCAGATACAATCAAACGAT-GTGGAAAGAGTTTGACCAAATACAGTCAAATAAT
* * * *
862729 GTTGGAAAATGATGGAAAGAGTTTGACCAGATATAGTCAAAACAATGGTGG
65 GGTGG---A-GATGG--AGAGTTTGACCAAATATAGTC-AAACGATGG-GA
* *
862780 AAAGAGTTTGACCAGATACAATCAAACGATGGTGGAAATAGTTTGACCAAATACAGCCAAA
1 AAAGAGTTTGACCAGATACAATCAAACGAT-GTGGAAAGAGTTTGACCAAATACAGTCAAA
862841 CGATGATAAA
Statistics
Matches: 231, Mismatches: 34, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
104 58 0.25
105 25 0.11
107 1 0.00
109 2 0.01
110 3 0.01
111 1 0.00
112 1 0.00
113 2 0.01
114 67 0.29
115 15 0.06
116 56 0.24
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.23
Consensus pattern (107 bp):
AAAGAGTTTGACCAGATACAATCAAACGATGTGGAAAGAGTTTGACCAAATACAGTCAAATAATG
GTGGAGATGGAGAGTTTGACCAAATATAGTCAAACGATGGGA
Found at i:862763 original size:45 final size:43
Alignment explanation
Indices: 862696--862935 Score: 150
Period size: 45 Copynumber: 5.8 Consensus size: 43
862686 CAAACGATAG
* * *
862696 TGGAAAGAGTTTGACCAAATATAGTCAAATGATGTTGGAAAATGA
1 TGGAAAGAGTTTGACCAGATACAGTCAAACGATG-T-GAAAATGA
* * *
862741 TGGAAAGAGTTTGACCAGATATAGTC-AA--A----ACAATGG
1 TGGAAAGAGTTTGACCAGATACAGTCAAACGATGTGAAAATGA
*
862777 TGGAAAGAGTTTGACCAGATACAATCAAACGA--TG-----G-
1 TGGAAAGAGTTTGACCAGATACAGTCAAACGATGTGAAAATGA
* * * *
862812 TGGAAATAGTTTGACCAAATACAGCCAAACGATGATAAAAAATGA
1 TGGAAAGAGTTTGACCAGATACAGTCAAACGATG-T-GAAAATGA
* * *
862857 TGAAAAGAGTTTGACTAGATATAGTCAAACGATGATGGAAAATGA
1 TGGAAAGAGTTTGACCAGATACAGTCAAACGATG-T-GAAAATGA
* * * * *
862902 TGAAAAAAGTTTAACCAGATACAATCAAATGATG
1 TGGAAAGAGTTTGACCAGATACAGTCAAACGATG
862936 ATAGGAAGAG
Statistics
Matches: 156, Mismatches: 24, Indels: 30
0.74 0.11 0.14
Matches are distributed among these distances:
35 28 0.18
36 30 0.19
37 2 0.01
38 1 0.01
39 1 0.01
42 1 0.01
44 3 0.02
45 90 0.58
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.23
Consensus pattern (43 bp):
TGGAAAGAGTTTGACCAGATACAGTCAAACGATGTGAAAATGA
Done.