Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold238

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1453955
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32

Warning! 499 characters in sequence are not A, C, G, or T


File 6 of 9

Found at i:862784 original size:81 final size:80

Alignment explanation

Indices: 862664--862817 Score: 200 Period size: 81 Copynumber: 1.9 Consensus size: 80 862654 AACGATGGGA * * * * * * 862664 AAAGAGTTTGACCATATACAACCAAACGATAGTGGAAAGAGTTTGACCAAATATAGTCAAATGAT 1 AAAGAGTTTGACCAGATACAACAAAACAATAGTGGAAAGAGTTTGACCAAATACAATCAAACGAT * 862729 GTTGGAAAATGATGG 66 GGTGGAAAATGATGG * * * * 862744 AAAGAGTTTGACCAGATATAGTCAAAACAATGGTGGAAAGAGTTTGACCAGATACAATCAAACGA 1 AAAGAGTTTGACCAGATACA-ACAAAACAATAGTGGAAAGAGTTTGACCAAATACAATCAAACGA 862809 TGGTGGAAA 65 TGGTGGAAA 862818 TAGTTTGACC Statistics Matches: 62, Mismatches: 11, Indels: 1 0.84 0.15 0.01 Matches are distributed among these distances: 80 18 0.29 81 44 0.71 ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22 Consensus pattern (80 bp): AAAGAGTTTGACCAGATACAACAAAACAATAGTGGAAAGAGTTTGACCAAATACAATCAAACGAT GGTGGAAAATGATGG Found at i:862788 original size:36 final size:35 Alignment explanation

Indices: 862736--863001 Score: 138 Period size: 35 Copynumber: 7.0 Consensus size: 35 862726 GATGTTGGAA * * * 862736 AATGATGGAAAGAGTTTGACCAGATATAGTCAAAAC 1 AATGGTGGAAAGAGTTTGACCAGATACAATC-AAAC 862772 AATGGTGGAAAGAGTTTGACCAGATACAATCAAAC 1 AATGGTGGAAAGAGTTTGACCAGATACAATCAAAC * * * * * 862807 GATGGTGGAAATAGTTTGACCAAATACAGCCAAACGATGATAAAA 1 AATGGTGGAAAGAGTTTGACCAGAT--A--C--A--AT--CAAAC * * * * * 862852 AATGATGAAAAGAGTTTGACTAGATATAGTCAAAC 1 AATGGTGGAAAGAGTTTGACCAGATACAATCAAAC * * * 862887 GATGATGGAAAATGATGAAAAAAGTTTAACCAGATACAATCAAAT 1 -A--ATGG----TG--G-AAAGAGTTTGACCAGATACAATCAAAC * * 862932 GATGATAGG-AAGAGTTTGACCAGATACAATCAAAC 1 AATGGT-GGAAAGAGTTTGACCAGATACAATCAAAC * * * 862967 AATGGTGGAAAGAGTTTGAACAGAAACAGTCAAAC 1 AATGGTGGAAAGAGTTTGACCAGATACAATCAAAC 863002 GGTGATGGAA Statistics Matches: 172, Mismatches: 36, Indels: 45 0.68 0.14 0.18 Matches are distributed among these distances: 34 2 0.01 35 79 0.46 36 29 0.17 37 3 0.02 38 4 0.02 39 3 0.02 41 1 0.01 42 5 0.03 43 3 0.02 45 43 0.25 ACGTcount: A:0.45, C:0.12, G:0.22, T:0.21 Consensus pattern (35 bp): AATGGTGGAAAGAGTTTGACCAGATACAATCAAAC Found at i:862809 original size:116 final size:115 Alignment explanation

Indices: 862633--862885 Score: 355 Period size: 116 Copynumber: 2.2 Consensus size: 115 862623 ATGGTGGATG * * * 862633 GAGTTTGACCAAATATAGTC-AAACGATGGGAAAAGAGTTTGACCATATACAACCAAACGATAGT 1 GAGTTTGACCAGATATAGTCAAAACAATGGGAAAAGAGTTTGACCAGATACAACCAAACGATAGT * * * * ** * 862697 GGAAAGAGTTTGACCAAATATAGTCAAATGATGTTGGAAAATGATGGAAA 66 GGAAAGAGTTTGACCAAATACAGCCAAACGATGATAAAAAATGATGAAAA * * * 862747 GAGTTTGACCAGATATAGTCAAAACAATGGTGGAAAGAGTTTGACCAGATACAATCAAACGATGG 1 GAGTTTGACCAGATATAGTCAAAACAATGG-GAAAAGAGTTTGACCAGATACAACCAAACGATAG * 862812 TGGAAATAGTTTGACCAAATACAGCCAAACGATGATAAAAAATGATGAAAA 65 TGGAAAGAGTTTGACCAAATACAGCCAAACGATGATAAAAAATGATGAAAA * 862863 GAGTTTGACTAGATATAGTCAAA 1 GAGTTTGACCAGATATAGTCAAA 862886 CGATGATGGA Statistics Matches: 122, Mismatches: 15, Indels: 2 0.88 0.11 0.01 Matches are distributed among these distances: 114 19 0.16 115 8 0.07 116 95 0.78 ACGTcount: A:0.43, C:0.12, G:0.22, T:0.23 Consensus pattern (115 bp): GAGTTTGACCAGATATAGTCAAAACAATGGGAAAAGAGTTTGACCAGATACAACCAAACGATAGT GGAAAGAGTTTGACCAAATACAGCCAAACGATGATAAAAAATGATGAAAA Found at i:862985 original size:160 final size:161 Alignment explanation

Indices: 862699--863033 Score: 442 Period size: 160 Copynumber: 2.1 Consensus size: 161 862689 ACGATAGTGG * * * * * * 862699 AAAGAGTTTGACCAAATATAGTCAAATGATGTTGGAAAATGATGGAAAGAGTTTGACCAGATATA 1 AAAGAGTTTGACCAAATATAGTCAAACGATGATGGAAAATGATGAAAAAAGTTTAACCAGATACA * * * * * 862764 GTCAAAACAATGGTGGAAAGAGTTTGACCAGATACAATCAAACGATGGTGGAAATAGTTTGACCA 66 ATCAAAACAATGATGGAAAGAGTTTGACCAGATACAATCAAACAATGGTGGAAAGAGTTTGAACA ** 862829 -AATACAGCCAAACGATGATAAAAAATGATGA 131 GAA-ACAGCCAAACGATGATAAAAAATGACAA * * 862860 AAAGAGTTTGACTAGATATAGTCAAACGATGATGGAAAATGATGAAAAAAGTTTAACCAGATACA 1 AAAGAGTTTGACCAAATATAGTCAAACGATGATGGAAAATGATGAAAAAAGTTTAACCAGATACA ** 862925 ATC-AAATGATGATAGG-AAGAGTTTGACCAGATACAATCAAACAATGGTGGAAAGAGTTTGAAC 66 ATCAAAACAATGAT-GGAAAGAGTTTGACCAGATACAATCAAACAATGGTGGAAAGAGTTTGAAC * * ** 862988 AGAAACAGTCAAACGGTGATGGAAAATGACAA 130 AGAAACAGCCAAACGATGATAAAAAATGACAA 863020 AAAGAGTTTGACCA 1 AAAGAGTTTGACCA 863034 TATACAATAA Statistics Matches: 150, Mismatches: 22, Indels: 5 0.85 0.12 0.03 Matches are distributed among these distances: 160 87 0.58 161 63 0.42 ACGTcount: A:0.45, C:0.11, G:0.22, T:0.21 Consensus pattern (161 bp): AAAGAGTTTGACCAAATATAGTCAAACGATGATGGAAAATGATGAAAAAAGTTTAACCAGATACA ATCAAAACAATGATGGAAAGAGTTTGACCAGATACAATCAAACAATGGTGGAAAGAGTTTGAACA GAAACAGCCAAACGATGATAAAAAATGACAA Found at i:863063 original size:115 final size:115 Alignment explanation

Indices: 862860--863083 Score: 308 Period size: 115 Copynumber: 1.9 Consensus size: 115 862850 AAAATGATGA * * * 862860 AAAGAGTTTGACTAGATATAGTCAAACGATGATGGAAAATGATGAAAAAAGTTTAACCAGATACA 1 AAAGAGTTTGACTAGAAACAGTCAAACGATGATGGAAAATGATCAAAAAAGTTTAACCAGATACA * * * * 862925 ATCAAATGATGATAGGAAGAGTTTGACCAGATACAATCAAACAATGGTGG 66 ATAAAATGATGATAGAAAAAGTTTAACCAGATACAATCAAACAATGGTGG * * * 862975 AAAGAGTTTGAAC-AGAAACAGTCAAACGGTGATGGAAAATGA-CAAAAAGAGTTTGACCATATA 1 AAAGAGTTTG-ACTAGAAACAGTCAAACGATGATGGAAAATGATCAAAAA-AGTTTAACCAGATA * * 863038 CAATAAAATGATGATAGAAAAAGTTTAACCAGATATAGTCAAACAA 64 CAATAAAATGATGATAGAAAAAGTTTAACCAGATACAATCAAACAA 863084 AAGAAAATTT Statistics Matches: 95, Mismatches: 12, Indels: 4 0.86 0.11 0.04 Matches are distributed among these distances: 114 5 0.05 115 88 0.93 116 2 0.02 ACGTcount: A:0.48, C:0.11, G:0.20, T:0.21 Consensus pattern (115 bp): AAAGAGTTTGACTAGAAACAGTCAAACGATGATGGAAAATGATCAAAAAAGTTTAACCAGATACA ATAAAATGATGATAGAAAAAGTTTAACCAGATACAATCAAACAATGGTGG Found at i:863124 original size:30 final size:30 Alignment explanation

Indices: 863086--863173 Score: 83 Period size: 30 Copynumber: 3.0 Consensus size: 30 863076 TCAAACAAAA * 863086 GAAA-ATTTGAACGAGTATAGTCCAA-TGAT 1 GAAAGATTTGAACGAGTATAGT-CAAGTGAG * * 863115 GAAAGATTTGACCGAGTATGGTCAAGTGAG 1 GAAAGATTTGAACGAGTATAGTCAAGTGAG * * * 863145 GAAAGACTTG-ACTGAGTAGAGCCAAGTGA 1 GAAAGATTTGAAC-GAGTATAGTCAAGTGA 863174 TAGTGATACA Statistics Matches: 48, Mismatches: 8, Indels: 5 0.79 0.13 0.08 Matches are distributed among these distances: 29 8 0.17 30 40 0.83 ACGTcount: A:0.38, C:0.11, G:0.28, T:0.23 Consensus pattern (30 bp): GAAAGATTTGAACGAGTATAGTCAAGTGAG Found at i:863428 original size:93 final size:93 Alignment explanation

Indices: 863259--863503 Score: 284 Period size: 93 Copynumber: 2.6 Consensus size: 93 863249 TGGTCATTGG * * * * ** 863259 ATGCATCAATACCATCTAGTGG-TGAGATAAAAGGGACATGATT-GGGAATGTGTGGTTAGGATA 1 ATGCATCAATATCATCTAGTGGTTGGGA-AAAAGGGATATGATTGGGGAACGTGTGGTCGGGATA * * * * * 863322 TCTTTATCCCATGGAAATCAGGTTTTGTG 65 TCCTTAGCCCATGGAAATCAGGTTCTATA * * 863351 GTGCATCAATATCATCTAGTGGTTGGGAAAAAAGGATATGATTGGGGAACGTGTGGTCGGGATAT 1 ATGCATCAATATCATCTAGTGGTTGGGAAAAAGGGATATGATTGGGGAACGTGTGGTCGGGATAT * 863416 CCTT-GCCTCATGGAAATCGGGTTCTATA 66 CCTTAGCC-CATGGAAATCAGGTTCTATA * 863444 ATGCATCAATATCAAT-TAGTGGTT-GGAAAAGAGGGATATGATTGGGGAACGTGTAGTCGG 1 ATGCATCAATATC-ATCTAGTGGTTGGGAAAA-AGGGATATGATTGGGGAACGTGTGGTCGG 863504 TGCCCATGCC Statistics Matches: 131, Mismatches: 17, Indels: 9 0.83 0.11 0.06 Matches are distributed among these distances: 92 41 0.31 93 88 0.67 94 2 0.02 ACGTcount: A:0.29, C:0.12, G:0.30, T:0.29 Consensus pattern (93 bp): ATGCATCAATATCATCTAGTGGTTGGGAAAAAGGGATATGATTGGGGAACGTGTGGTCGGGATAT CCTTAGCCCATGGAAATCAGGTTCTATA Found at i:863573 original size:91 final size:93 Alignment explanation

Indices: 863442--863773 Score: 318 Period size: 93 Copynumber: 3.6 Consensus size: 93 863432 TCGGGTTCTA * * * * * 863442 TAATGCATCAATATCAAT-TAGTGGTTGGAAAAGAGGGATATGATTGGGGAACGTGTAGTCG-GT 1 TAATGCATCAATA-CCATCTAGTGGTTGGAAAAGAGAGATATGATT-GGGAACATATAGGCGAGT * 863505 -GCCC-ATGCCCTAAGGAAATTAGGCTTTG 64 CGCCCTATGCCCCAAGGAAATTAGGCTTTG * * * * 863533 TAATGCATCAATACCTTCTAGTGGTTGGATGAAGA-AGATATGATTGGGAACATATGGGCGATTC 1 TAATGCATCAATACCATCTAGTGGTTGGA-AAAGAGAGATATGATTGGGAACATATAGGCGAGTC * * 863597 TCCCTTTGCCCCAAGGAAATTAGGCTTTG 65 GCCCTATGCCCCAAGGAAATTAGGCTTTG * * * * * * 863626 TAATACATCAATACCATCTAGTGGTTAGATAAA-AGGGATATGATTAGGAACATATGGGCGATTC 1 TAATGCATCAATACCATCTAGTGGTTGGA-AAAGAGAGATATGATTGGGAACATATAGGCGAGTC **** * * 863690 TTTTTTTGCCCCAAAGAAATTAGGCTTTG 65 GCCCTATGCCCCAAGGAAATTAGGCTTTG * * * * 863719 TGATGCATCAATGCCATCTAGTGGTTGGATAAA-AGGGATATGATTAGGAACATAT 1 TAATGCATCAATACCATCTAGTGGTTGGA-AAAGAGAGATATGATTGGGAACATAT 863774 GGGCAATTTT Statistics Matches: 209, Mismatches: 26, Indels: 10 0.85 0.11 0.04 Matches are distributed among these distances: 90 13 0.06 91 34 0.16 92 8 0.04 93 154 0.74 ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30 Consensus pattern (93 bp): TAATGCATCAATACCATCTAGTGGTTGGAAAAGAGAGATATGATTGGGAACATATAGGCGAGTCG CCCTATGCCCCAAGGAAATTAGGCTTTG Found at i:863636 original size:93 final size:92 Alignment explanation

Indices: 863510--863800 Score: 404 Period size: 93 Copynumber: 3.1 Consensus size: 92 863500 TCGGTGCCCA * * 863510 TGCCCTAAGGAAATTAGGCTTTGTAATGCATCAATACCTTCTAGTGGTTGGATGAAGAA-GATAT 1 TGCCCCAAGGAAATTAGGCTTTGTAATGCATCAATACCATCTAGTGGTTGGAT-AA-AAGGATAT * * 863574 GATTGGGAACATATGGGCGATTCTCCCTT 64 GATTAGGAACATATGGGCGATTCTCCATT * * 863603 TGCCCCAAGGAAATTAGGCTTTGTAATACATCAATACCATCTAGTGGTTAGATAAAAGGGATATG 1 TGCCCCAAGGAAATTAGGCTTTGTAATGCATCAATACCATCTAGTGGTTGGATAAAA-GGATATG *** 863668 ATTAGGAACATATGGGCGATTCTTTTTT 65 ATTAGGAACATATGGGCGATTCTCCATT * * * 863696 TGCCCCAAAGAAATTAGGCTTTGTGATGCATCAATGCCATCTAGTGGTTGGATAAAAGGGATATG 1 TGCCCCAAGGAAATTAGGCTTTGTAATGCATCAATACCATCTAGTGGTTGGATAAAA-GGATATG * * 863761 ATTAGGAACATATGGGCAATTTTCCATT 65 ATTAGGAACATATGGGCGATTCTCCATT * 863789 TGCCCTAAGGAA 1 TGCCCCAAGGAA 863801 GAAATCATGT Statistics Matches: 176, Mismatches: 20, Indels: 4 0.88 0.10 0.02 Matches are distributed among these distances: 91 2 0.01 92 2 0.01 93 172 0.98 ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31 Consensus pattern (92 bp): TGCCCCAAGGAAATTAGGCTTTGTAATGCATCAATACCATCTAGTGGTTGGATAAAAGGATATGA TTAGGAACATATGGGCGATTCTCCATT Found at i:864746 original size:111 final size:112 Alignment explanation

Indices: 864599--864810 Score: 284 Period size: 111 Copynumber: 1.9 Consensus size: 112 864589 GGTGGGCCTA ** * * 864599 AAAAATTTCAAAACTGATTGGGTACATGCTCCATTTTTCTATGCACGAATAGATCAAAATGTATA 1 AAAAATTTCAAAACTGATAAGATACATGCTCCATTTTTCTATGCACGAATAGATCAAAATGCATA * * * 864664 AAATATGAATTTC-TCCAAAATTAGACAAATTTGATATTGTTGGATC 66 AAATATGAATTTCTTCAAAAATCAAACAAATTTGATATTGTTGGATC * * ** 864710 AAAAATTTCAAAAGTGATAAGATACATGC-CCTATTTTTCTATGCACGAATGGATCGGAATGCAT 1 AAAAATTTCAAAACTGATAAGATACATGCTCC-ATTTTTCTATGCACGAATAGATCAAAATGCAT * * 864774 AGAGTATGAATTTCTTCAAAAATCAAACAAATTTGAT 65 AAAATATGAATTTCTTCAAAAATCAAACAAATTTGAT 864811 GTTTCCCCAA Statistics Matches: 86, Mismatches: 13, Indels: 3 0.84 0.13 0.03 Matches are distributed among these distances: 110 2 0.02 111 65 0.76 112 19 0.22 ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33 Consensus pattern (112 bp): AAAAATTTCAAAACTGATAAGATACATGCTCCATTTTTCTATGCACGAATAGATCAAAATGCATA AAATATGAATTTCTTCAAAAATCAAACAAATTTGATATTGTTGGATC Found at i:865432 original size:22 final size:21 Alignment explanation

Indices: 865407--865466 Score: 66 Period size: 22 Copynumber: 2.7 Consensus size: 21 865397 TATTTCATGA 865407 TTTTTTTCTTTTCTTTTCTTTC 1 TTTTTTT-TTTTCTTTTCTTTC * * 865429 TTTTTCATTTTTCATTTCTTTC 1 TTTTT-TTTTTTCTTTTCTTTC 865451 TTTTTTTATGTTTCTT 1 TTTTTTT-T-TTTCTT 865467 ATTTAGAGGG Statistics Matches: 31, Mismatches: 4, Indels: 5 0.77 0.10 0.12 Matches are distributed among these distances: 21 1 0.03 22 24 0.77 23 6 0.19 ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78 Consensus pattern (21 bp): TTTTTTTTTTTCTTTTCTTTC Found at i:866730 original size:49 final size:49 Alignment explanation

Indices: 866656--866754 Score: 189 Period size: 49 Copynumber: 2.0 Consensus size: 49 866646 GGCACCTTTT 866656 AGTCCTCAAAGAGTAAGACGACTTTCCTTTTCCTTTAAAGCCCATACAA 1 AGTCCTCAAAGAGTAAGACGACTTTCCTTTTCCTTTAAAGCCCATACAA * 866705 AGTCCTCAAAGAGTAAGACGCCTTTCCTTTTCCTTTAAAGCCCATACAA 1 AGTCCTCAAAGAGTAAGACGACTTTCCTTTTCCTTTAAAGCCCATACAA 866754 A 1 A 866755 TTGGTGGCAC Statistics Matches: 49, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 49 49 1.00 ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28 Consensus pattern (49 bp): AGTCCTCAAAGAGTAAGACGACTTTCCTTTTCCTTTAAAGCCCATACAA Found at i:866865 original size:65 final size:66 Alignment explanation

Indices: 866705--866913 Score: 264 Period size: 65 Copynumber: 3.2 Consensus size: 66 866695 GCCCATACAA ** 866705 AGTCCTCAAAGAGTA-AGACGCCTTTCCTTTTCC-TTTAAAGCCCATACAAATTGGTGGCACCTT 1 AGTCCTCAAAGAGTAGA-ACGCCTTTCCTTTTCCTTTTAAAGCCCATACAAGCTGGTGGCACCTT 866768 TT 65 TT * * 866770 AATCCTCAAAGAGCATG-ACGCCTTTCCTTTTCCTTTTAAAGCCCATACAAGCTGGTGGCACCTT 1 AGTCCTCAAAGAGTA-GAACGCCTTTCCTTTTCCTTTTAAAGCCCATACAAGCTGGTGGCACCTT 866834 TT 65 TT * * * * * * * 866836 AGTCCTCAAAGAGTAGAATG-CTTTTCTTTTTCTTTTAAAGTCCACACAAGCTAGTGGTACCTTT 1 AGTCCTCAAAGAGTAGAACGCCTTTCCTTTTCCTTTTAAAGCCCATACAAGCTGGTGGCACCTTT 866900 T 66 T * 866901 AGTCCTTAAAGAG 1 AGTCCTCAAAGAG 866914 CTTCCTTTTT Statistics Matches: 126, Mismatches: 14, Indels: 8 0.85 0.09 0.05 Matches are distributed among these distances: 65 81 0.64 66 45 0.36 ACGTcount: A:0.26, C:0.24, G:0.16, T:0.33 Consensus pattern (66 bp): AGTCCTCAAAGAGTAGAACGCCTTTCCTTTTCCTTTTAAAGCCCATACAAGCTGGTGGCACCTTT T Found at i:867638 original size:21 final size:20 Alignment explanation

Indices: 867590--867646 Score: 78 Period size: 20 Copynumber: 2.8 Consensus size: 20 867580 ATACAAACAA * 867590 TGAATGTATTGATACATAGG 1 TGAATGTATTGATACATAGC * 867610 TGAATGTATTGATACATATC 1 TGAATGTATTGATACATAGC * 867630 TGAAATGTATCGATACA 1 TG-AATGTATTGATACA 867647 GGACCATGTC Statistics Matches: 33, Mismatches: 3, Indels: 1 0.89 0.08 0.03 Matches are distributed among these distances: 20 20 0.61 21 13 0.39 ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35 Consensus pattern (20 bp): TGAATGTATTGATACATAGC Found at i:867709 original size:20 final size:20 Alignment explanation

Indices: 867684--867721 Score: 67 Period size: 20 Copynumber: 1.9 Consensus size: 20 867674 TTGGAAAGAA * 867684 ATTGTATCGATATATTTTTC 1 ATTGTATCGATACATTTTTC 867704 ATTGTATCGATACATTTT 1 ATTGTATCGATACATTTT 867722 GGGTTTTTGA Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 17 1.00 ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53 Consensus pattern (20 bp): ATTGTATCGATACATTTTTC Found at i:870271 original size:79 final size:76 Alignment explanation

Indices: 870170--870431 Score: 285 Period size: 79 Copynumber: 3.3 Consensus size: 76 870160 TTCACCATCG * ** 870170 GGGATACTCTAACCCCGCTTTTATTTTCAGAATATTAAAATTTTTATCTCGAGGATACTCCAACC 1 GGGATACTCCAACCCCATTTTTATTTTCA-AATATTAAAATTTTTATCTCGAGGATACTCCAACC * 870235 TCGTTATTTTTGA 65 -CGTTATTTTAGA * * * 870248 GGCGATACTCCAACCCCATTTTTATTTTTAAAATATTAAAATTTTTATCTTGGGGATACTCCAAC 1 GG-GATACTCCAACCCCATTTTTA-TTTTCAAATATTAAAATTTTTATCTCGAGGATACTCCAA- * 870313 CCCGTTATTTCTAAA 63 CCCGTTATTT-TAGA * * * * 870328 GGGATACTCCAACCTCATTTTTATTTCCAAATATT-AAATGTTTCATCTC-AGGGATACTTCAAT 1 GGGATACTCCAACCCCATTTTTATTTTCAAATATTAAAAT-TTTTATCTCGA-GGATACTCCAA- * 870391 CCCGTTATTTTCGA 63 CCCGTTATTTTAGA * * 870405 GGGGATACTCTAACCCTATTTTTATTT 1 -GGGATACTCCAACCCCATTTTTATTT 870432 CTAAAAATTT Statistics Matches: 156, Mismatches: 21, Indels: 14 0.82 0.11 0.07 Matches are distributed among these distances: 77 6 0.04 78 62 0.40 79 77 0.49 80 11 0.07 ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40 Consensus pattern (76 bp): GGGATACTCCAACCCCATTTTTATTTTCAAATATTAAAATTTTTATCTCGAGGATACTCCAACCC GTTATTTTAGA Found at i:870450 original size:78 final size:75 Alignment explanation

Indices: 870207--870470 Score: 253 Period size: 78 Copynumber: 3.4 Consensus size: 75 870197 CAGAATATTA * * * 870207 AAATTTTTATCTCGAGGATACTCCAACCTCGTTATTTTTGAGGCGATACTCCAACCCCATTTTTA 1 AAATTTTTATCTCG-GGATACTCCAACC-CGTTATTTTCGAGGGGATACTCCAACCCTATTTTTA * 870272 TTTTTAAAATATT 64 TTTCTAAAA-ATT * * * 870285 AAAATTTTTATCTTGGGGATACTCCAACCCCGTTA-TTTCTAAAGGGATACTCCAA-CCTCATTT 1 -AAATTTTTATC-TCGGGATACTCCAA-CCCGTTATTTTC-GAGGGGATACTCCAACCCT-ATTT * * 870348 TTATTTCCAAATATT 61 TTATTTCTAAAAATT * * * 870363 AAATGTTTCATCTCAGGGATACTTCAATCCCGTTATTTTCGAGGGGATACTCTAACCCTATTTTT 1 AAAT-TTTTATCTC-GGGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAACCCTATTTTT 870428 ATTTCTAAAAATT 63 ATTTCTAAAAATT ** * * 870441 TGATTTTTCAGCATCGGAATACTCCAACCC 1 AAATTTTT-ATC-TCGGGATACTCCAACCC 870471 CTTTTTTATT Statistics Matches: 151, Mismatches: 24, Indels: 22 0.77 0.12 0.11 Matches are distributed among these distances: 77 11 0.07 78 75 0.50 79 61 0.40 80 4 0.03 ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39 Consensus pattern (75 bp): AAATTTTTATCTCGGGATACTCCAACCCGTTATTTTCGAGGGGATACTCCAACCCTATTTTTATT TCTAAAAATT Found at i:870505 original size:129 final size:129 Alignment explanation

Indices: 870331--870601 Score: 347 Period size: 129 Copynumber: 2.1 Consensus size: 129 870321 TTCTAAAGGG * * 870331 ATACTCCAACCTCATTTTTATTTCCAAATATTAAATGTTTCATCTCAGG-GATACTTCAATCCC- 1 ATACTCCAACCCCATTTTTATTTCCAAATATTAAATGTTTCATCTC-GGAGATACTCCAA-CCCT * * * * 870394 GTTATTTTCGAGGGGATACTCTAACC-CTATTTTTATTTCTAAAAAT-TTGATTTTTCAGCATC- 64 GCTATTTTCGAGGGGATACTCCAACCTC-ATTTTTATTTC-AAAAATATCGATTTTTCACCATCA 870456 GGA 127 GGA * 870459 ATACTCCAACCCCTTTTTTATTTCCAAAATATTAAAAT-TTTCATCTCGGAGATACTCCAACCCT 1 ATACTCCAACCCCATTTTTATTTCC-AAATATT-AAATGTTTCATCTCGGAGATACTCCAACCCT ** * 870523 GCTATTTTTTAGGGGATACTCCAACCTCATTTTTATTTCCAAAATATCGATTTTTCACCATCAGG 64 GCTATTTTCGAGGGGATACTCCAACCTCATTTTTATTTCAAAAATATCGATTTTTCACCATCAGG * 870588 G 129 A 870589 ATACTCCAACCCC 1 ATACTCCAACCCC 870602 GTTATTTCTA Statistics Matches: 125, Mismatches: 11, Indels: 12 0.84 0.07 0.08 Matches are distributed among these distances: 128 33 0.26 129 72 0.58 130 20 0.16 ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38 Consensus pattern (129 bp): ATACTCCAACCCCATTTTTATTTCCAAATATTAAATGTTTCATCTCGGAGATACTCCAACCCTGC TATTTTCGAGGGGATACTCCAACCTCATTTTTATTTCAAAAATATCGATTTTTCACCATCAGGA Found at i:870520 original size:51 final size:52 Alignment explanation

Indices: 870408--870531 Score: 139 Period size: 50 Copynumber: 2.4 Consensus size: 52 870398 TTTTCGAGGG * * ** * 870408 GATACTCTAA-CCCTATTTTTATTTCTAAAAATTTGATTTTTCAGCATCGGA 1 GATACTCCAACCCCTATTTTTATTTCCAAAAATTAAAATTTTCAGCATCGGA * 870459 -ATACTCCAACCCCT-TTTTTATTTCCAAAATATTAAAATTTTCATC-TCGGA 1 GATACTCCAACCCCTATTTTTATTTCCAAAA-ATTAAAATTTTCAGCATCGGA 870509 GATACTCCAACCCTGCTATTTTT 1 GATACTCCAACCC--CTATTTTT 870532 TAGGGGATAC Statistics Matches: 61, Mismatches: 6, Indels: 9 0.80 0.08 0.12 Matches are distributed among these distances: 50 27 0.44 51 27 0.44 53 2 0.03 54 5 0.08 ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41 Consensus pattern (52 bp): GATACTCCAACCCCTATTTTTATTTCCAAAAATTAAAATTTTCAGCATCGGA Found at i:870548 original size:79 final size:80 Alignment explanation

Indices: 870456--870679 Score: 260 Period size: 79 Copynumber: 2.8 Consensus size: 80 870446 TTTCAGCATC * 870456 GGAATACTCCAACCCCTTTTTTATTTCCAAAATATTAAAATTTTCATC-TC-GGAGATACTCCAA 1 GGAATACTCCAACCCCTTTTTTATTTCCAAAATATTAAAATTTTCACCATCAGG-GATACTCCAA * * * 870519 CCCTGCTATTTTTTAG 65 CCCCGCTATTTCTAAG * * * ** * 870535 GGGATACTCCAACCTCATTTTTATTTCCAAAATA-TCGATTTTTCACCATCAGGGATACTCCAAC 1 GGAATACTCCAACCCCTTTTTTATTTCCAAAATATTAAAATTTTCACCATCAGGGATACTCCAAC * 870599 CCCGTTATTTCTAAG 66 CCCGCTATTTCTAAG * * * * 870614 GGAATACTCCAA-CCATATTTTTATTTCCAAAATA-TCAATTTTTCACCATTAGGGATACTCCAA 1 GGAATACTCCAACCCCT-TTTTTATTTCCAAAATATTAAAATTTTCACCATCAGGGATACTCCAA 870677 CCC 65 CCC 870680 GTTTTCACTT Statistics Matches: 125, Mismatches: 17, Indels: 6 0.84 0.11 0.04 Matches are distributed among these distances: 78 10 0.08 79 113 0.90 80 2 0.02 ACGTcount: A:0.30, C:0.25, G:0.09, T:0.35 Consensus pattern (80 bp): GGAATACTCCAACCCCTTTTTTATTTCCAAAATATTAAAATTTTCACCATCAGGGATACTCCAAC CCCGCTATTTCTAAG Found at i:876758 original size:33 final size:32 Alignment explanation

Indices: 876716--876783 Score: 102 Period size: 33 Copynumber: 2.1 Consensus size: 32 876706 CGTTACAAGC 876716 CAATGTATCGATACAT-TTGGTCATGTATCAATA 1 CAATGTATCGATACATCTT-GT-ATGTATCAATA * 876749 CAATGTATCGATACATCTTGTATGTATCGATA 1 CAATGTATCGATACATCTTGTATGTATCAATA 876781 CAA 1 CAA 876784 ACAGTTAAGG Statistics Matches: 33, Mismatches: 1, Indels: 3 0.89 0.03 0.08 Matches are distributed among these distances: 32 13 0.39 33 18 0.55 34 2 0.06 ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35 Consensus pattern (32 bp): CAATGTATCGATACATCTTGTATGTATCAATA Found at i:876870 original size:13 final size:13 Alignment explanation

Indices: 876852--876876 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 876842 TACAGTGGTC 876852 ATGTATCGATACA 1 ATGTATCGATACA 876865 ATGTATCGATAC 1 ATGTATCGATAC 876877 TGTGCATTAT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32 Consensus pattern (13 bp): ATGTATCGATACA Found at i:876894 original size:33 final size:32 Alignment explanation

Indices: 876835--876897 Score: 90 Period size: 33 Copynumber: 1.9 Consensus size: 32 876825 ATCTTTGCAA * 876835 GTATCGATACAGTGGTCATGTATCGATACAAT 1 GTATCGATACAGTGATCATGTATCGATACAAT * * 876867 GTATCGATACTGTGCATTATGTATCGATACA 1 GTATCGATACAGTG-ATCATGTATCGATACA 876898 TTTGAAGGTG Statistics Matches: 27, Mismatches: 3, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 32 13 0.48 33 14 0.52 ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33 Consensus pattern (32 bp): GTATCGATACAGTGATCATGTATCGATACAAT Found at i:879388 original size:13 final size:13 Alignment explanation

Indices: 879370--879418 Score: 89 Period size: 13 Copynumber: 3.8 Consensus size: 13 879360 ATAAACCCTT 879370 TGTATCGATACAC 1 TGTATCGATACAC 879383 TGTATCGATACAC 1 TGTATCGATACAC * 879396 TGTATCGATACAA 1 TGTATCGATACAC 879409 TGTATCGATA 1 TGTATCGATA 879419 TAGAGAATGT Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 13 35 1.00 ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33 Consensus pattern (13 bp): TGTATCGATACAC Found at i:885692 original size:13 final size:13 Alignment explanation

Indices: 885674--885698 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 885664 TACAGTGGTC 885674 ATGTATCGATACA 1 ATGTATCGATACA 885687 ATGTATCGATAC 1 ATGTATCGATAC 885699 TGTGCATTAT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32 Consensus pattern (13 bp): ATGTATCGATACA Found at i:885716 original size:33 final size:32 Alignment explanation

Indices: 885657--885719 Score: 90 Period size: 33 Copynumber: 1.9 Consensus size: 32 885647 ATCTTTGCAA * 885657 GTATCGATACAGTGGTCATGTATCGATACAAT 1 GTATCGATACAGTGATCATGTATCGATACAAT * * 885689 GTATCGATACTGTGCATTATGTATCGATACA 1 GTATCGATACAGTG-ATCATGTATCGATACA 885720 TCTGAAGATG Statistics Matches: 27, Mismatches: 3, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 32 13 0.48 33 14 0.52 ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33 Consensus pattern (32 bp): GTATCGATACAGTGATCATGTATCGATACAAT Found at i:885730 original size:20 final size:20 Alignment explanation

Indices: 885707--885746 Score: 71 Period size: 20 Copynumber: 2.0 Consensus size: 20 885697 ACTGTGCATT 885707 ATGTATCGATACATCTGAAG 1 ATGTATCGATACATCTGAAG * 885727 ATGTATCGATACATTTGAAG 1 ATGTATCGATACATCTGAAG 885747 GTTTTGACCT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 19 1.00 ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33 Consensus pattern (20 bp): ATGTATCGATACATCTGAAG Found at i:886072 original size:17 final size:16 Alignment explanation

Indices: 886033--886072 Score: 53 Period size: 16 Copynumber: 2.4 Consensus size: 16 886023 TTTTTATTCC * 886033 TTTTTCATTTTTACTT 1 TTTTTTATTTTTACTT * 886049 TTTTTTATTTTTCCTT 1 TTTTTTATTTTTACTT 886065 TTTATTTA 1 TTT-TTTA 886073 ATTTGATTGT Statistics Matches: 21, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 16 17 0.81 17 4 0.19 ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78 Consensus pattern (16 bp): TTTTTTATTTTTACTT Found at i:891632 original size:13 final size:13 Alignment explanation

Indices: 891614--891639 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 891604 CAATTTTTTG 891614 TGTATCGATACAT 1 TGTATCGATACAT 891627 TGTATCGATACAT 1 TGTATCGATACAT 891640 ACTTGCTGTA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38 Consensus pattern (13 bp): TGTATCGATACAT Found at i:891725 original size:20 final size:20 Alignment explanation

Indices: 891700--891772 Score: 92 Period size: 20 Copynumber: 3.6 Consensus size: 20 891690 AACTTTTTTT 891700 ATGTATCGATACATTGCAAC 1 ATGTATCGATACATTGCAAC ***** 891720 ATGTATCGATACATCTTTTTT 1 ATGTATCGATACAT-TGCAAC 891741 ATGTATCGATACATTGCAAC 1 ATGTATCGATACATTGCAAC 891761 ATGTATCGATAC 1 ATGTATCGATAC 891773 TTTGAATTGT Statistics Matches: 42, Mismatches: 10, Indels: 2 0.78 0.19 0.04 Matches are distributed among these distances: 20 27 0.64 21 15 0.36 ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37 Consensus pattern (20 bp): ATGTATCGATACATTGCAAC Found at i:891751 original size:41 final size:42 Alignment explanation

Indices: 891678--891772 Score: 174 Period size: 41 Copynumber: 2.3 Consensus size: 42 891668 CTGCCAAGAA 891678 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC 1 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC * 891720 ATGTATCGATACATC-TTTTTTATGTATCGATACATTGCAAC 1 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC 891761 ATGTATCGATAC 1 ATGTATCGATAC 891773 TTTGAATTGT Statistics Matches: 52, Mismatches: 1, Indels: 1 0.96 0.02 0.02 Matches are distributed among these distances: 41 38 0.73 42 14 0.27 ACGTcount: A:0.31, C:0.17, G:0.13, T:0.40 Consensus pattern (42 bp): ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC Found at i:894244 original size:20 final size:20 Alignment explanation

Indices: 894219--894295 Score: 66 Period size: 20 Copynumber: 3.6 Consensus size: 20 894209 ATAATCACCC 894219 TGTATCGATACAAAGAAAAA 1 TGTATCGATACAAAGAAAAA * * 894239 TGTATCGATACATAGAATTTCCAGA 1 TGTATCGATACAAAGAA-----AAA * 894264 TGTATCGATACACAA-AAACA 1 TGTATCGATACA-AAGAAAAA 894284 TGTATCGATACA 1 TGTATCGATACA 894296 TTTTGGACAT Statistics Matches: 47, Mismatches: 4, Indels: 12 0.75 0.06 0.19 Matches are distributed among these distances: 20 30 0.64 25 16 0.34 26 1 0.02 ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26 Consensus pattern (20 bp): TGTATCGATACAAAGAAAAA Found at i:896330 original size:15 final size:15 Alignment explanation

Indices: 896310--896340 Score: 53 Period size: 15 Copynumber: 2.1 Consensus size: 15 896300 ATTTCGTTTG * 896310 GAGCTTCTTCATTTT 1 GAGCTTCCTCATTTT 896325 GAGCTTCCTCATTTT 1 GAGCTTCCTCATTTT 896340 G 1 G 896341 GACATTTTTA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48 Consensus pattern (15 bp): GAGCTTCCTCATTTT Found at i:900420 original size:13 final size:13 Alignment explanation

Indices: 900402--900427 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 900392 CAATTTTTTG 900402 TGTATCGATACAT 1 TGTATCGATACAT 900415 TGTATCGATACAT 1 TGTATCGATACAT 900428 ACTTGCTGTA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38 Consensus pattern (13 bp): TGTATCGATACAT Found at i:900513 original size:20 final size:20 Alignment explanation

Indices: 900488--900560 Score: 101 Period size: 20 Copynumber: 3.6 Consensus size: 20 900478 AACTTTTTTT 900488 ATGTATCGATACATTGCAAC 1 ATGTATCGATACATTGCAAC **** 900508 ATGTATCGATACATCTTTTTC 1 ATGTATCGATACAT-TGCAAC 900529 ATGTATCGATACATTGCAAC 1 ATGTATCGATACATTGCAAC 900549 ATGTATCGATAC 1 ATGTATCGATAC 900561 TTTGAATTGT Statistics Matches: 44, Mismatches: 8, Indels: 2 0.81 0.15 0.04 Matches are distributed among these distances: 20 28 0.64 21 16 0.36 ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36 Consensus pattern (20 bp): ATGTATCGATACATTGCAAC Found at i:900539 original size:41 final size:42 Alignment explanation

Indices: 900466--900560 Score: 165 Period size: 41 Copynumber: 2.3 Consensus size: 42 900456 CTGCCAAGAA * 900466 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC 1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC * 900508 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC 1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC 900549 ATGTATCGATAC 1 ATGTATCGATAC 900561 TTTGAATTGT Statistics Matches: 51, Mismatches: 2, Indels: 1 0.94 0.04 0.02 Matches are distributed among these distances: 41 37 0.73 42 14 0.27 ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39 Consensus pattern (42 bp): ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC Found at i:901855 original size:13 final size:13 Alignment explanation

Indices: 901837--901862 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 901827 TACAGCAAGT 901837 ATGTATCGATACA 1 ATGTATCGATACA 901850 ATGTATCGATACA 1 ATGTATCGATACA 901863 CAAAAAATTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31 Consensus pattern (13 bp): ATGTATCGATACA Found at i:904115 original size:21 final size:21 Alignment explanation

Indices: 904082--904126 Score: 56 Period size: 21 Copynumber: 2.1 Consensus size: 21 904072 TTGCAAGATG * 904082 AAATAAAGAAGTTGGCTAATGA 1 AAATAAAGAAGTTAGCTAA-GA * 904104 AAATAATG-AGTTAGCTAAGA 1 AAATAAAGAAGTTAGCTAAGA 904124 AAA 1 AAA 904127 ATGAAAACTT Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 20 5 0.24 21 9 0.43 22 7 0.33 ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22 Consensus pattern (21 bp): AAATAAAGAAGTTAGCTAAGA Found at i:905950 original size:15 final size:15 Alignment explanation

Indices: 905930--905968 Score: 60 Period size: 15 Copynumber: 2.6 Consensus size: 15 905920 TAAAAATGTC * 905930 CAAAATGAGGAAGCT 1 CAAAATGAAGAAGCT 905945 CAAAATGAAGAAGCT 1 CAAAATGAAGAAGCT * 905960 CCAAATGAA 1 CAAAATGAA 905969 ATTGATGAAC Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 15 22 1.00 ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13 Consensus pattern (15 bp): CAAAATGAAGAAGCT Found at i:908000 original size:20 final size:20 Alignment explanation

Indices: 907975--908051 Score: 73 Period size: 20 Copynumber: 3.6 Consensus size: 20 907965 ATGTCCAAAA 907975 TGTATCGATACATGTTTCTG 1 TGTATCGATACATGTTTCTG * ** 907995 TGTATCGATACATCTGGAAATTCAA 1 TGTATCGATACA--T-G--TTTCTG * 908020 TGTATCGATACATTTTTCTG 1 TGTATCGATACATGTTTCTG 908040 TGTATCGATACA 1 TGTATCGATACA 908052 GGGTGATTAT Statistics Matches: 45, Mismatches: 7, Indels: 10 0.73 0.11 0.16 Matches are distributed among these distances: 20 27 0.60 22 1 0.02 23 2 0.04 25 15 0.33 ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40 Consensus pattern (20 bp): TGTATCGATACATGTTTCTG Found at i:908215 original size:20 final size:20 Alignment explanation

Indices: 908177--908216 Score: 55 Period size: 22 Copynumber: 1.9 Consensus size: 20 908167 TTTTGCGAAA 908177 TACTTGTTTTTCACTTCAAAT 1 TACTTGTTTTTCAC-TCAAAT 908198 TACTTCGTTTTTCA-TCAAA 1 TACTT-GTTTTTCACTCAAA 908217 ACTAGCATCA Statistics Matches: 18, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 20 5 0.28 21 5 0.28 22 8 0.44 ACGTcount: A:0.25, C:0.20, G:0.05, T:0.50 Consensus pattern (20 bp): TACTTGTTTTTCACTCAAAT Found at i:909893 original size:36 final size:36 Alignment explanation

Indices: 909846--909917 Score: 135 Period size: 36 Copynumber: 2.0 Consensus size: 36 909836 GTGCAAATAA * 909846 ATTTTTTATATGAATTACTTGATTAAGGGGGAGAAT 1 ATTTTTGATATGAATTACTTGATTAAGGGGGAGAAT 909882 ATTTTTGATATGAATTACTTGATTAAGGGGGAGAAT 1 ATTTTTGATATGAATTACTTGATTAAGGGGGAGAAT 909918 TATTAATAAA Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 36 35 1.00 ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40 Consensus pattern (36 bp): ATTTTTGATATGAATTACTTGATTAAGGGGGAGAAT Found at i:910584 original size:13 final size:13 Alignment explanation

Indices: 910566--910591 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 910556 TACAGCAAGT 910566 ATGTATCGATACA 1 ATGTATCGATACA 910579 ATGTATCGATACA 1 ATGTATCGATACA 910592 CAAAAAATTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31 Consensus pattern (13 bp): ATGTATCGATACA Found at i:911680 original size:60 final size:60 Alignment explanation

Indices: 911576--911694 Score: 193 Period size: 60 Copynumber: 2.0 Consensus size: 60 911566 TTCTTAAATT ** 911576 ATTTAATATAAAATGGTATTCTATCATAATAAACTCCAGTGGGAACTCCATAACACAATC 1 ATTTAATATAAAATGGTATTCTATCATAATAAACTCCAACGGGAACTCCATAACACAATC ** * 911636 ATTTAATATAAAATGGTATTCTATCATAATGGACTGCAACGGGAACTCCATAACACAAT 1 ATTTAATATAAAATGGTATTCTATCATAATAAACTCCAACGGGAACTCCATAACACAAT 911695 ATAGTGTTTG Statistics Matches: 54, Mismatches: 5, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 60 54 1.00 ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29 Consensus pattern (60 bp): ATTTAATATAAAATGGTATTCTATCATAATAAACTCCAACGGGAACTCCATAACACAATC Found at i:914648 original size:14 final size:14 Alignment explanation

Indices: 914629--914658 Score: 51 Period size: 14 Copynumber: 2.1 Consensus size: 14 914619 TAAGTCCCCG 914629 ATAAAAAAATAATA 1 ATAAAAAAATAATA * 914643 ATAAAAAAATACTA 1 ATAAAAAAATAATA 914657 AT 1 AT 914659 GTTGGATAGA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23 Consensus pattern (14 bp): ATAAAAAAATAATA Found at i:917213 original size:40 final size:40 Alignment explanation

Indices: 917158--917233 Score: 134 Period size: 40 Copynumber: 1.9 Consensus size: 40 917148 CCAAAGATAG ** 917158 AAAATTTGATATTTTTAGAAGTAAAAATGAGGTTAGAGTA 1 AAAATTTGATATTTTTAGAAGTAAAAACAAGGTTAGAGTA 917198 AAAATTTGATATTTTTAGAAGTAAAAACAAGGTTAG 1 AAAATTTGATATTTTTAGAAGTAAAAACAAGGTTAG 917234 GGTATCTCCT Statistics Matches: 34, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 40 34 1.00 ACGTcount: A:0.46, C:0.01, G:0.18, T:0.34 Consensus pattern (40 bp): AAAATTTGATATTTTTAGAAGTAAAAACAAGGTTAGAGTA Found at i:917221 original size:23 final size:23 Alignment explanation

Indices: 917158--917224 Score: 74 Period size: 23 Copynumber: 3.2 Consensus size: 23 917148 CCAAAGATAG 917158 AAAATTTGATATTTTTAGAAGTA 1 AAAATTTGATATTTTTAGAAGTA ** 917181 AAAA--TG--A-GGTTAG-AGTA 1 AAAATTTGATATTTTTAGAAGTA 917198 AAAATTTGATATTTTTAGAAGTA 1 AAAATTTGATATTTTTAGAAGTA 917221 AAAA 1 AAAA 917225 CAAGGTTAGG Statistics Matches: 34, Mismatches: 4, Indels: 12 0.68 0.08 0.24 Matches are distributed among these distances: 17 8 0.24 18 4 0.12 19 3 0.09 21 3 0.09 22 4 0.12 23 12 0.35 ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36 Consensus pattern (23 bp): AAAATTTGATATTTTTAGAAGTA Found at i:917333 original size:81 final size:80 Alignment explanation

Indices: 917198--917752 Score: 556 Period size: 81 Copynumber: 6.9 Consensus size: 80 917188 GGTTAGAGTA * * 917198 AAAATTTGATATTTTTAGAAGTAAAAACAAGGTTAGG-GTATCTCCTC-GAAAATGGTAGGGTTG 1 AAAATTTGATATTTTTAGAAGTAAAAACAGGGTT-GGAGTATCCCCTCAG-AAATGGT-GGGTTG 917261 GAGTATCCCTGAAGATGG 63 GAGTATCCCTGAAGATGG * ** * 917279 AAAATTTGATATTTTTAGAATTAAAAATGGGGTTGGCGTATCCCCTCAGAAATGGTGTGGTTGGA 1 AAAATTTGATATTTTTAGAAGTAAAAACAGGGTTGGAGTATCCCCTCAGAAATGGTG-GGTTGGA 917344 GTATTCCC--ATAGATGG 65 GTA-TCCCTGA-AGATGG * * * 917360 AAAATTTG-TTTTTTTAGAAGTAAAAATAGGGTTGGAGTATCCCCTC-GAAAATGGTAAGGTTGG 1 AAAATTTGATATTTTTAGAAGTAAAAACAGGGTTGGAGTATCCCCTCAG-AAATGGT-GGGTTGG * 917423 AGTATCCCCGAAGATGG 64 AGTATCCCTGAAGATGG * * * * ** 917440 AAATTTTGATATTTTTAGGAGT-AAAACGGGGTTGGAGTATCCCTTTGGAAATGGTGGGGTTGGA 1 AAAATTTGATATTTTTAGAAGTAAAAACAGGGTTGGAGTATCCCCTCAGAAATGGT-GGGTTGGA * 917504 GTATCCTTGAAGAT-G 65 GTATCCCTGAAGATGG * * * * 917519 AAAATTTTGATATTTTTAGGAGTAAAAACAAGGCTGGAGTATCCCCTCCA-AAATGGCGAGGTTG 1 AAAA-TTTGATATTTTTAGAAGTAAAAACAGGGTTGGAGTATCCCCT-CAGAAATGGTG-GGTTG * ** 917583 AAGTATCCCCAAAGAT-G 63 GAGTATCCCTGAAGATGG * ** ** 917600 AAAATTTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCGTCTCAGAAATGGTGGGGTTGG 1 AAAA-TTTGATATTTTTAGAAGTAAAAACAGGGTTGGAGTATCCCCTCAGAAATGGT-GGGTTGG * * * * 917665 AGTATCTCTAAACATGA 64 AGTATCCCTGAAGATGG * * * * * 917682 AAAATTTGATATTTTTA-AGAGTAAAAACAGGATTAGAGTATCCCCTAAAAAATGGTGGGTTAGA 1 AAAATTTGATATTTTTAGA-AGTAAAAACAGGGTTGGAGTATCCCCTCAGAAATGGTGGGTTGGA 917746 GTATCCC 65 GTATCCC 917753 CTTTTAATGT Statistics Matches: 399, Mismatches: 56, Indels: 39 0.81 0.11 0.08 Matches are distributed among these distances: 79 9 0.02 80 148 0.37 81 232 0.58 82 10 0.03 ACGTcount: A:0.33, C:0.11, G:0.26, T:0.31 Consensus pattern (80 bp): AAAATTTGATATTTTTAGAAGTAAAAACAGGGTTGGAGTATCCCCTCAGAAATGGTGGGTTGGAG TATCCCTGAAGATGG Found at i:917537 original size:161 final size:162 Alignment explanation

Indices: 917197--917753 Score: 682 Period size: 161 Copynumber: 3.5 Consensus size: 162 917187 AGGTTAGAGT * * 917197 AAAAATTTGATATTTTTAGAAGTAAAAACAAGGTTAGG-GTATCTCCTCGAAAATGGTAGGGTTG 1 AAAAATTTGATATTTTTAGAAGTAAAAACAAGGTT-GGAGTATCCCCTCGAAAATGGTAAGGTTG * * * * * * 917261 GAGTATCCCTGAAGATGGAAAATTTGATATTTTTAGAATTAAAAATGGGGTTGGCGTATCCCCTC 65 GAGTATCCCCGAAGATGGAAATTTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCCCTTC * * * 917326 AGAAATGGTGTGGTTGGAGTATTCC-CATAGATG 130 AGAAATGGTGGGGTTGGAGTA-TCCTTAAAGATG * * * * 917359 GAAAATTTG-TTTTTTTAGAAGTAAAAATAGGGTTGGAGTATCCCCTCGAAAATGGTAAGGTTGG 1 AAAAATTTGATATTTTTAGAAGTAAAAACAAGGTTGGAGTATCCCCTCGAAAATGGTAAGGTTGG * ** 917423 AGTATCCCCGAAGATGGAAATTTTGATATTTTTAGGAGT-AAAACGGGGTTGGAGTATCCCTTTG 66 AGTATCCCCGAAGATGGAAATTTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCCCTTCA * 917487 GAAATGGTGGGGTTGGAGTATCCTTGAAGATG 131 GAAATGGTGGGGTTGGAGTATCCTTAAAGATG * * * * ** * 917519 AAAATTTTGATATTTTTAGGAGTAAAAACAAGGCTGGAGTATCCCCTCCAAAATGGCGAGGTTGA 1 AAAAATTTGATATTTTTAGAAGTAAAAACAAGGTTGGAGTATCCCCTCGAAAATGGTAAGGTTGG * * * 917584 AGTATCCCCAAAGATGAAAATTTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTAT-CGTCTC 66 AGTATCCCCGAAGATGGAAATTTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCCCT-TC * 917648 AGAAATGGTGGGGTTGGAGTAT-CTCTAAACATG 130 AGAAATGGTGGGGTTGGAGTATCCT-TAAAGATG * ** * 917681 AAAAATTTGATATTTTTA-AGAGTAAAAAC-AGGATTAGAGTATCCCCTAAAAAATGGT-GGGTT 1 AAAAATTTGATATTTTTAGA-AGTAAAAACAAGG-TTGGAGTATCCCCTCGAAAATGGTAAGGTT * 917743 AGAGTATCCCC 64 GGAGTATCCCC 917754 TTTTAATGTT Statistics Matches: 339, Mismatches: 48, Indels: 17 0.84 0.12 0.04 Matches are distributed among these distances: 159 3 0.01 160 53 0.16 161 185 0.55 162 98 0.29 ACGTcount: A:0.33, C:0.11, G:0.26, T:0.31 Consensus pattern (162 bp): AAAAATTTGATATTTTTAGAAGTAAAAACAAGGTTGGAGTATCCCCTCGAAAATGGTAAGGTTGG AGTATCCCCGAAGATGGAAATTTTGATATTTTTAGGAGTAAAAATGGGGTTGGAGTATCCCTTCA GAAATGGTGGGGTTGGAGTATCCTTAAAGATG Found at i:920211 original size:20 final size:20 Alignment explanation

Indices: 920186--920237 Score: 77 Period size: 20 Copynumber: 2.5 Consensus size: 20 920176 CATTTTAGAC * 920186 ATGTATTGATACATTCACTT 1 ATGTATCGATACATTCACTT * 920206 ATGTATCAATACATTCACTT 1 ATGTATCGATACATTCACTT 920226 ATTGTATCGATA 1 A-TGTATCGATA 920238 TAGATTATAA Statistics Matches: 28, Mismatches: 3, Indels: 1 0.88 0.09 0.03 Matches are distributed among these distances: 20 19 0.68 21 9 0.32 ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42 Consensus pattern (20 bp): ATGTATCGATACATTCACTT Found at i:920309 original size:21 final size:20 Alignment explanation

Indices: 920269--920310 Score: 57 Period size: 21 Copynumber: 2.0 Consensus size: 20 920259 TTTTAACCGT * 920269 TGGAAACATGTATCGATACA 1 TGGAAACATATATCGATACA * 920289 TGGAAAGCATATATTGATACA 1 TGGAAA-CATATATCGATACA 920310 T 1 T 920311 TTCGGCAAAA Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 20 6 0.32 21 13 0.68 ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29 Consensus pattern (20 bp): TGGAAACATATATCGATACA Found at i:920484 original size:65 final size:64 Alignment explanation

Indices: 920410--920664 Score: 199 Period size: 64 Copynumber: 3.8 Consensus size: 64 920400 CGTCTTGCTC * * * 920410 TTTAAGGACTACAAAGGGAGTGTCACCAGCTTGTGTGGGCTTTAAAAAGGGAAAGCATCTTACTT 1 TTTAAGGACTA-AAAAGGAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGGAAAAGCATCTTACTT * ** 920475 TTTAAGGACTAAAAAAGGAGTGCCACCAGCTTGT-TGGACTATTTTAAAACA-GAAAAGTTTCTT 1 TTTAAGGACT-AAAAAGGAGTGCCACCAGCTTGTGTGGGC---TTTAAAA-AGGAAAAGCATCTT * 920538 TCTT 61 ACTT * * * * * * * * * * 920542 TTTGAGGACTAAAAAAGAATGCCACCAGCTTGTATGTGCTTTGAAAAGAAAAAGCGTCCTGCTT 1 TTTAAGGACTAAAAAGGAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGGAAAAGCATCTTACTT * * * * 920606 TTTAAGGACTAAAAGTGGTAAAAGGTGTCACTAGCTTGTGTGGGCTTTGAAAAGGAAAA 1 TTTAAGGACTAAAA-AGG----A-GTGCCACCAGCTTGTGTGGGCTTTAAAAAGGAAAA 920665 AAGAAAAGCG Statistics Matches: 150, Mismatches: 27, Indels: 21 0.76 0.14 0.11 Matches are distributed among these distances: 63 1 0.01 64 34 0.23 65 31 0.21 66 22 0.15 67 31 0.21 68 1 0.01 69 1 0.01 70 29 0.19 ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29 Consensus pattern (64 bp): TTTAAGGACTAAAAAGGAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGGAAAAGCATCTTACTT Found at i:922238 original size:29 final size:29 Alignment explanation

Indices: 922193--922251 Score: 109 Period size: 29 Copynumber: 2.0 Consensus size: 29 922183 AACTATACAA * 922193 TGATGAATGAAATAGATAAAGGAATTGGG 1 TGATGAATGAAACAGATAAAGGAATTGGG 922222 TGATGAATGAAACAGATAAAGGAATTGGG 1 TGATGAATGAAACAGATAAAGGAATTGGG 922251 T 1 T 922252 TAGTCATGTA Statistics Matches: 29, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 29 29 1.00 ACGTcount: A:0.44, C:0.02, G:0.31, T:0.24 Consensus pattern (29 bp): TGATGAATGAAACAGATAAAGGAATTGGG Found at i:932729 original size:12 final size:11 Alignment explanation

Indices: 932707--932782 Score: 52 Period size: 12 Copynumber: 6.9 Consensus size: 11 932697 AGAGAAAGAA * 932707 GAGAGAGGAGG 1 GAGATAGGAGG 932718 GATGATAGGAGG 1 GA-GATAGGAGG * 932730 AGAGACAGGA-- 1 -GAGATAGGAGG * 932740 GAGATAGTA-- 1 GAGATAGGAGG 932749 GAGATAGGAGG 1 GAGATAGGAGG 932760 GATGATAGGAGG 1 GA-GATAGGAGG * 932772 AGAGACAGGAG 1 -GAGATAGGAG 932783 AGATAATAGA Statistics Matches: 53, Mismatches: 6, Indels: 11 0.76 0.09 0.16 Matches are distributed among these distances: 9 15 0.28 11 4 0.08 12 30 0.57 13 4 0.08 ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09 Consensus pattern (11 bp): GAGATAGGAGG Found at i:932739 original size:24 final size:24 Alignment explanation

Indices: 932706--932791 Score: 85 Period size: 24 Copynumber: 3.8 Consensus size: 24 932696 AAGAGAAAGA * 932706 AGAGAGAGGAGGGATGATAGGAGG 1 AGAGACAGGAGGGATGATAGGAGG * 932730 AGAGACAGGA--GA-GAT---AGT 1 AGAGACAGGAGGGATGATAGGAGG * 932748 AGAGATAGGAGGGATGATAGGAGG 1 AGAGACAGGAGGGATGATAGGAGG * * 932772 AGAGACAGGAGAGATAATAG 1 AGAGACAGGAGGGATGATAG 932792 AGAGAGGAGG Statistics Matches: 49, Mismatches: 7, Indels: 12 0.72 0.10 0.18 Matches are distributed among these distances: 18 11 0.22 20 2 0.04 21 6 0.12 22 2 0.04 24 28 0.57 ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10 Consensus pattern (24 bp): AGAGACAGGAGGGATGATAGGAGG Found at i:932758 original size:42 final size:42 Alignment explanation

Indices: 932697--932815 Score: 193 Period size: 42 Copynumber: 2.8 Consensus size: 42 932687 TAGCCCTCAA * * 932697 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG 1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG * 932739 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG 1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG * * 932781 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG 1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG 932816 GAGAGAAGAA Statistics Matches: 71, Mismatches: 6, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 42 71 1.00 ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08 Consensus pattern (42 bp): AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG Found at i:947351 original size:16 final size:16 Alignment explanation

Indices: 947330--947363 Score: 68 Period size: 16 Copynumber: 2.1 Consensus size: 16 947320 GACATAATTA 947330 ATAAGATTAATTATAT 1 ATAAGATTAATTATAT 947346 ATAAGATTAATTATAT 1 ATAAGATTAATTATAT 947362 AT 1 AT 947364 GTAGACACCT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 18 1.00 ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44 Consensus pattern (16 bp): ATAAGATTAATTATAT Found at i:947716 original size:19 final size:21 Alignment explanation

Indices: 947664--947719 Score: 62 Period size: 21 Copynumber: 2.8 Consensus size: 21 947654 AATTTTTACA 947664 ATTTGTATCGATACAAATAGT 1 ATTTGTATCGATACAAATAGT ** * * 947685 AAATGTATTGATACATA-AGT 1 ATTTGTATCGATACAAATAGT 947705 -TTTGTATCGATACAA 1 ATTTGTATCGATACAA 947720 GGTATCGATA Statistics Matches: 27, Mismatches: 8, Indels: 2 0.73 0.22 0.05 Matches are distributed among these distances: 19 11 0.41 20 3 0.11 21 13 0.48 ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38 Consensus pattern (21 bp): ATTTGTATCGATACAAATAGT Found at i:947726 original size:13 final size:13 Alignment explanation

Indices: 947708--947732 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 947698 CATAAGTTTT 947708 GTATCGATACAAG 1 GTATCGATACAAG 947721 GTATCGATACAA 1 GTATCGATACAA 947733 AACTAATTTG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24 Consensus pattern (13 bp): GTATCGATACAAG Found at i:947777 original size:13 final size:13 Alignment explanation

Indices: 947759--947789 Score: 55 Period size: 13 Copynumber: 2.5 Consensus size: 13 947749 GCCAAGGAAA 947759 TGTATCGATATAT 1 TGTATCGATATAT 947772 TGTATCGATATAT 1 TGTATCGATATAT 947785 T-TATC 1 TGTATC 947790 ATTGTATCGA Statistics Matches: 18, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 12 4 0.22 13 14 0.78 ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48 Consensus pattern (13 bp): TGTATCGATATAT Found at i:947795 original size:20 final size:20 Alignment explanation

Indices: 947770--947824 Score: 101 Period size: 20 Copynumber: 2.8 Consensus size: 20 947760 GTATCGATAT 947770 ATTGTATCGATATATTTATC 1 ATTGTATCGATATATTTATC * 947790 ATTGTATCGATACATTTATC 1 ATTGTATCGATATATTTATC 947810 ATTGTATCGATATAT 1 ATTGTATCGATATAT 947825 GCAAGCAAAT Statistics Matches: 33, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 33 1.00 ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47 Consensus pattern (20 bp): ATTGTATCGATATATTTATC Found at i:953736 original size:156 final size:156 Alignment explanation

Indices: 953447--953742 Score: 335 Period size: 156 Copynumber: 1.9 Consensus size: 156 953437 ACTTCAAAAA * * 953447 TTTTGAAAAAAACTTTCCTAAATGGTTTAGGAAATATTACATGCTAAATGGTTTGTCTAAATTAA 1 TTTTGAAAAAAACTTTCCTAAATGGTTTAGGAAATATGACATGATAAATGGTTTGTCTAAATTAA * * * ** * * * 953512 GACAAACATAAGTAAAAGTTGGATAATGTCCTAATTAAAATGAATAATCTAAAAATTAGTTAAAG 66 AACAAACATAACTAAAAGTTAGATAATGTCCTAATTAAAACAAACAACCTAAAAATTAGGTAAAG 953577 TCTAATTTAATGTCTTAAAATGTTGT 131 TCTAATTTAATGTCTTAAAATGTTGT * * * ** 953603 TTTTGGAAAACAAGTTTCCTAAATGGTTTAGGATATATGACAT-ATAAATGGTTTGTCTGGATTA 1 TTTT-GAAAAAAACTTTCCTAAATGGTTTAGGAAATATGACATGATAAATGGTTTGTCTAAATTA * ** ** * * * * 953667 AAATAAAGTTGTCTAAAAGTTAGATAATAG-CCTAATTAAGACAAACAACCTAGAAGTTAGGTGA 65 AAACAAACATAACTAAAAGTTAGATAAT-GTCCTAATTAAAACAAACAACCTAAAAATTAGGTAA * 953731 TGTCTAATTTAA 129 AGTCTAATTTAA 953743 GACATGCTTC Statistics Matches: 113, Mismatches: 25, Indels: 4 0.80 0.18 0.03 Matches are distributed among these distances: 156 78 0.69 157 35 0.31 ACGTcount: A:0.41, C:0.09, G:0.16, T:0.35 Consensus pattern (156 bp): TTTTGAAAAAAACTTTCCTAAATGGTTTAGGAAATATGACATGATAAATGGTTTGTCTAAATTAA AACAAACATAACTAAAAGTTAGATAATGTCCTAATTAAAACAAACAACCTAAAAATTAGGTAAAG TCTAATTTAATGTCTTAAAATGTTGT Found at i:954404 original size:34 final size:34 Alignment explanation

Indices: 954366--954497 Score: 187 Period size: 34 Copynumber: 3.9 Consensus size: 34 954356 ATTACAACTT * 954366 TATCTTTTCAAAGGCTTAGATAGAACCT-TAACAC 1 TATCTTTTCAAAGGCTAAGATAGAACCTCT-ACAC 954400 TATCTTTTCGAAA-GCTAAGATAGAACCTCTACAC 1 TATCTTTTC-AAAGGCTAAGATAGAACCTCTACAC * * 954434 TATCTTTTCGAAGTCTAAGATAGAACCTCTACAC 1 TATCTTTTCAAAGGCTAAGATAGAACCTCTACAC * * 954468 TATCTTTTCGAAGGCTTAGATAGAACCTCT 1 TATCTTTTCAAAGGCTAAGATAGAACCTCT 954498 TAATTACCTT Statistics Matches: 90, Mismatches: 5, Indels: 6 0.89 0.05 0.06 Matches are distributed among these distances: 33 2 0.02 34 84 0.93 35 4 0.04 ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33 Consensus pattern (34 bp): TATCTTTTCAAAGGCTAAGATAGAACCTCTACAC Found at i:955118 original size:33 final size:33 Alignment explanation

Indices: 955081--955146 Score: 89 Period size: 33 Copynumber: 2.0 Consensus size: 33 955071 ATTTCCATAG * * 955081 TGTATCGATATAT-TACACTGTGTATTGATACAA 1 TGTATCGATACATCTACA-TGTGTATCGATACAA * 955114 TGTATCGATACATCTGCATGTGTATCGATACAA 1 TGTATCGATACATCTACATGTGTATCGATACAA 955147 ATAAAGGTTT Statistics Matches: 29, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 33 26 0.90 34 3 0.10 ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36 Consensus pattern (33 bp): TGTATCGATACATCTACATGTGTATCGATACAA Found at i:956913 original size:13 final size:13 Alignment explanation

Indices: 956895--956922 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 956885 CATTATTCAA 956895 TGTATCGATACAT 1 TGTATCGATACAT 956908 TGTATCGATACAT 1 TGTATCGATACAT 956921 TG 1 TG 956923 ATCTTTGTAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39 Consensus pattern (13 bp): TGTATCGATACAT Found at i:963942 original size:21 final size:21 Alignment explanation

Indices: 963897--963942 Score: 56 Period size: 21 Copynumber: 2.2 Consensus size: 21 963887 ATGAAAAGCC ** 963897 AAAAAAAAAACAAAAACAAGC 1 AAAAAAAAAACAAAAACAAAA * * 963918 AAAAAAAAAACACACACAAAA 1 AAAAAAAAAACAAAAACAAAA 963939 AAAA 1 AAAA 963943 GTGCAAAGGC Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 21 21 1.00 ACGTcount: A:0.83, C:0.15, G:0.02, T:0.00 Consensus pattern (21 bp): AAAAAAAAAACAAAAACAAAA Found at i:964567 original size:31 final size:28 Alignment explanation

Indices: 964513--964569 Score: 78 Period size: 31 Copynumber: 1.9 Consensus size: 28 964503 ATTTTGTTGG * 964513 AAATAAACCATTATCTTTCTTGTCAAAT 1 AAATAAACCATTATCTTTATTGTCAAAT 964541 AAATCAAACCATATCATCTTTATTGTCAA 1 AAAT-AAACCAT-T-ATCTTTATTGTCAA 964570 GCAAGCTTTT Statistics Matches: 25, Mismatches: 1, Indels: 3 0.86 0.03 0.10 Matches are distributed among these distances: 28 4 0.16 29 7 0.28 30 1 0.04 31 13 0.52 ACGTcount: A:0.40, C:0.19, G:0.04, T:0.37 Consensus pattern (28 bp): AAATAAACCATTATCTTTATTGTCAAAT Found at i:965298 original size:30 final size:30 Alignment explanation

Indices: 965228--965463 Score: 258 Period size: 30 Copynumber: 7.6 Consensus size: 30 965218 ATATCTCTTC 965228 TCAAAGTCCATGACTCAGTGGCATCTTTTCT 1 TCAAAGTCCATGACTCAGTGGCATCTTTT-T ** 965259 TCAAAGTCCACAACTCAGTGGCAT-TTCTTT 1 TCAAAGTCCATGACTCAGTGGCATCTT-TTT * * * 965289 TCTAAGTCCACGACTTAGTGGCATCTTTTTCT 1 TCAAAGTCCATGACTCAGTGGCATC-TTTT-T * * * 965321 TCAAAGTCCACGACTCAGTGGCATATCTTT 1 TCAAAGTCCATGACTCAGTGGCATCTTTTT * * * 965351 TCTAAGTCGATGACTTAGTGGCATCTTTTTTCT 1 TCAAAGTCCATGACTCAGTGGCATC--TTTT-T * 965384 TCAAAGTCCATGACTCAGTGGCATCTCTTT 1 TCAAAGTCCATGACTCAGTGGCATCTTTTT * * 965414 CCAATGTCCATGACTCAGTGGCATCTTTTCT 1 TCAAAGTCCATGACTCAGTGGCATCTTTT-T * 965445 TCAAAGTCCATGACACAGT 1 TCAAAGTCCATGACTCAGT 965464 ATCATTTTTT Statistics Matches: 172, Mismatches: 25, Indels: 16 0.81 0.12 0.08 Matches are distributed among these distances: 30 72 0.42 31 49 0.28 32 28 0.16 33 23 0.13 ACGTcount: A:0.23, C:0.25, G:0.16, T:0.35 Consensus pattern (30 bp): TCAAAGTCCATGACTCAGTGGCATCTTTTT Found at i:965413 original size:63 final size:61 Alignment explanation

Indices: 965220--965463 Score: 328 Period size: 62 Copynumber: 4.0 Consensus size: 61 965210 TTCTTCAAAT * * * 965220 ATCTCTTCTCAAAGTCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGC 1 ATCTCTTTTCTAAGTCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGC * * * 965281 ATTTCTTTTCTAAGTCCACGACTTAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGC 1 ATCTCTTTTCTAAGTCCATGACTCAGTGGCATC-TTTTCTTCAAAGTCCACGACTCAGTGGC * * * * 965343 ATATCTTTTCTAAGTCGATGACTTAGTGGCATCTTTTTTCTTCAAAGTCCATGACTCAGTGGC 1 ATCTCTTTTCTAAGTCCATGACTCAGTGGCATC--TTTTCTTCAAAGTCCACGACTCAGTGGC * * * 965406 ATCTC-TTTCCAATGTCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCATGACACAGT 1 ATCTCTTTTCTAA-GTCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGT 965464 ATCATTTTTT Statistics Matches: 165, Mismatches: 15, Indels: 6 0.89 0.08 0.03 Matches are distributed among these distances: 61 52 0.32 62 63 0.38 63 50 0.30 ACGTcount: A:0.23, C:0.26, G:0.16, T:0.36 Consensus pattern (61 bp): ATCTCTTTTCTAAGTCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGC Found at i:965484 original size:61 final size:62 Alignment explanation

Indices: 965229--965484 Score: 297 Period size: 61 Copynumber: 4.1 Consensus size: 62 965219 TATCTCTTCT * * 965229 CAAAGTCCATGACTCAGTGGCATC-TTTTCTTCAAAGTCCACAACTCAGTGGCAT-TTCTTTT 1 CAAAGTCCATGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGCATATT-TTTC * * * 965290 CTAAGTCCACGACTTAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGCATATCTTTT- 1 CAAAGTCCATGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGCATAT-TTTTC * * * * * * 965352 CTAAGTCGATGACTTAGTGGCATCTTTTTTCTTCAAAGTCCATGACTCAGTGGCATCTCTTTC 1 CAAAGTCCATGACTCAGTGGCATC-TTTTTCTTCAAAGTCCACGACTCAGTGGCATATTTTTC * * * ** 965415 CAATGTCCATGACTCAGTGGCATC-TTTTCTTCAAAGTCCATGACACAGTATCAT-TTTTTC 1 CAAAGTCCATGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGCATATTTTTC 965475 CAAAAGTCCA 1 C-AAAGTCCA 965485 CAACTCCATG Statistics Matches: 171, Mismatches: 18, Indels: 12 0.85 0.09 0.06 Matches are distributed among these distances: 60 6 0.04 61 55 0.32 62 54 0.32 63 55 0.32 64 1 0.01 ACGTcount: A:0.24, C:0.25, G:0.15, T:0.35 Consensus pattern (62 bp): CAAAGTCCATGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGCATATTTTTC Found at i:965503 original size:61 final size:61 Alignment explanation

Indices: 965220--965520 Score: 203 Period size: 62 Copynumber: 4.9 Consensus size: 61 965210 TTCTTCAAAT ** * ** * * 965220 ATCTC-TTCTCAAAGTCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGC 1 ATCTCTTTC-CAAAGTCCACAACTCAGTGGCACCTTTTCTTCAAAGTCCATGACACAGTAGC * * * * * * * * * 965281 ATTTCTTTTCTAAGTCCACGACTTAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGC 1 ATCTCTTTCCAAAGTCCACAACTCAGTGGCA-CCTTTTCTTCAAAGTCCATGACACAGTAGC * * * * ** * * * * 965343 ATATCTTTTCTAAGTCGATGACTTAGTGGCATCTTTTTTCTTCAAAGTCCATGACTCAGTGGC 1 ATCTCTTTCCAAAGTCCACAACTCAGTGGCA-C-CTTTTCTTCAAAGTCCATGACACAGTAGC * ** * * 965406 ATCTCTTTCCAATGTCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCATGACACAGTATC 1 ATCTCTTTCCAAAGTCCACAACTCAGTGGCACCTTTTCTTCAAAGTCCATGACACAGTAGC * * ** 965467 AT-TTTTTCCAAAAGTCCACAACTCCA-TGGTACCTTTTCTTTTTAAGTCCATGAC 1 ATCTCTTTCC-AAAGTCCACAACT-CAGTGGCACCTTTTC-TTCAAAGTCCATGAC 965521 TCTGTGGCAC Statistics Matches: 203, Mismatches: 31, Indels: 11 0.83 0.13 0.04 Matches are distributed among these distances: 60 6 0.03 61 70 0.34 62 74 0.36 63 53 0.26 ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36 Consensus pattern (61 bp): ATCTCTTTCCAAAGTCCACAACTCAGTGGCACCTTTTCTTCAAAGTCCATGACACAGTAGC Found at i:965558 original size:34 final size:34 Alignment explanation

Indices: 965478--966657 Score: 1094 Period size: 34 Copynumber: 35.8 Consensus size: 34 965468 TTTTTTCCAA * * * 965478 AAGTCCACAACTCCATGGTA-CC-TTTTCTTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT ** * * 965510 AAGTCCATGACTCTGTGGCA-CCTTTTTCCCTGTT 1 AAGTCCACAACTCCGTGGCATCCTTTTT-CCTTTT * * * * 965544 AAGCCCATACCTCTGTGGCATCCTTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCC-TTTTTCCTTTT * 965579 AAGTCCACAACTCCGTGGCATTCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * 965613 AAGTCCACAACTCCGTGGCA--C-----CCTTTG 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT 965640 AAGTCCACAACTCCGTGGCAT-CTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * 965673 AAGTCCACAACTCCGTGGCA-CCTTGTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * 965706 AAG-CTCACAACTCTGTGGCA-CC-TTTTCTTTTT 1 AAGTC-CACAACTCCGTGGCATCCTTTTTCCTTTT * 965738 AAGTCCAC-ACTCCTTGGCA-CCATTTTTCCCTTTT 1 AAGTCCACAACTCCGTGGCATCC-TTTTT-CCTTTT * * * * 965772 ATGCCCACACCTCCGTGGCATCCCATTTTCCTTTT 1 AAGTCCACAACTCCGTGGCAT-CCTTTTTCCTTTT * 965807 AAGTCCACAACTCCGTGGCACCCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * 965841 ATGTCCATAACTCCGTGGCA-CTCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATC-CTTTTTCCTTTT * * * 965875 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * 965909 AAGTCCACAACTCCATGGCA--C-----CCTTTA 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * 965936 AAGTGCACAACTCCGTGGCAT-CTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * 965969 AAGTCCACAACTCCATGGCA-CCTTGTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT ** * 966002 AAGTCCACAACTTTGTGGCA--CTTTTTCTTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * * * 966034 AAGTCCACGACTCTGTGGCACCCTTTTCCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * 966068 AAGCCCACACCTCCGTGGCATCCCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCAT-CCTTTTTCCTTTT * * 966103 ATGTCCACAACTCCGTGGTA-CTCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATC-CTTTTTCCTTTT * * * 966137 AAGTCCACAACTCCGTAGCACCCTTTTCCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT ** * * 966171 AACCCCACATCTCCGTAGCAT-CTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * 966204 AAGTCCACAACTCCGTGGCA-CCTTGTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * * 966237 GAGTCCACAACTCTGTGGCA-CC-TTTTCTTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * * 966269 AAGTCCACGACTCCTTGGCACCCTTTTTCCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTT-CCTTTT * * * 966304 AAGCCCACACCTCTGTGGCATCCCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCAT-CCTTTTTCCTTTT * ** * * * 966339 AAGTCCATAACTTTGGGGTACCCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * 966373 AAGTCTACAACTCCGTGGCA-CTCTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATC-CTTTTTCCTTTT * * * * 966407 AAGTCCATAACTCTGTGGCACCCTTTTTCTTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * 966441 AAGTCCACAACTCCGTGGCA--C-----CCTTTG 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * 966468 AAG-CCACAACTCCGTGACAT-CTTTTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * 966500 AAGTCCACAACTTCGTGGCA-CCTTGTTCCTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT * * * 966533 AAGTCCACAACTCCATAGCA-CC-TTTTCTTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT ** * * 966565 AAGTCCATGACTCTGTGGCA-CCCTTTTCCTTTTT 1 AAGTCCACAACTCCGTGGCATCCTTTTTCC-TTTT * * * 966599 AAG-CCTACACCTCCATGTCATCCCTTTTTCC-TTT 1 AAGTCC-ACAACTCCGTGGCAT-CCTTTTTCCTTTT * 966633 AAGTCCACAACTTCGTGGCA-CCTTT 1 AAGTCCACAACTCCGTGGCATCCTTT 966658 ATGTCCAATA Statistics Matches: 949, Mismatches: 145, Indels: 108 0.79 0.12 0.09 Matches are distributed among these distances: 26 15 0.02 27 55 0.06 28 2 0.00 31 11 0.01 32 125 0.13 33 229 0.24 34 356 0.38 35 130 0.14 36 24 0.03 37 2 0.00 ACGTcount: A:0.18, C:0.32, G:0.12, T:0.37 Consensus pattern (34 bp): AAGTCCACAACTCCGTGGCATCCTTTTTCCTTTT Found at i:965645 original size:27 final size:27 Alignment explanation

Indices: 965607--965694 Score: 113 Period size: 27 Copynumber: 3.0 Consensus size: 27 965597 CATTCTTTTT 965607 CCTTTTAAGTCCACAACTCCGTGGCAC 1 CCTTTTAAGTCCACAACTCCGTGGCAC * 965634 CCTTTGAAGTCCACAACTCCGTGGCATC 1 CCTTTTAAGTCCACAACTCCGTGGCA-C 965662 TTTTTCCTTTTAAGTCCACAACTCCGTGGCAC 1 -----CCTTTTAAGTCCACAACTCCGTGGCAC 965694 C 1 C 965695 TTGTTCCTTT Statistics Matches: 53, Mismatches: 2, Indels: 12 0.79 0.03 0.18 Matches are distributed among these distances: 27 26 0.49 28 1 0.02 32 1 0.02 33 25 0.47 ACGTcount: A:0.20, C:0.35, G:0.15, T:0.30 Consensus pattern (27 bp): CCTTTTAAGTCCACAACTCCGTGGCAC Found at i:965883 original size:296 final size:294 Alignment explanation

Indices: 965500--966602 Score: 1220 Period size: 296 Copynumber: 3.7 Consensus size: 294 965490 CCATGGTACC * ** * * * * * * 965500 TTTTCTTTTTAAGTCCATGACTCTGTGGCA-CCTTTTTCCCTGTTAAGCCCATACCTCTGTGGCA 1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTT-CCTTTTAAGTCCACAACTCCGTGGCA 965564 TCCTTTTTTCCTTTTAAGTCCACAACTCCGTGGCATTCTTTTTCCTTTTAAGTCCACAACTCCGT 65 T-C-TTTTTCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCGT * 965629 GGCA-C-CCTTTGAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGC 127 GGCACCTCCTTTGAAGTCCACAACTCCGTGGCA-CCTTTTCCTTTTAAGTCCACAACTCCGTGGC 965692 A-CCTTGTTCCTTTTAAGCTCACAACTCTGTGGCACCTTTTCTTTTTAAGTCCACACTCCTTGGC 191 ACCCTTGTTCCTTTTAAGCTCACAACTCTGTGGCACCTTTTCTTTTTAAGTCCACACT-CTTGGC * * 965756 ACCATTTTTCCCTTTTATGCCCACACCTCCGTGGCATCCCA 255 ACC-TTTTTCCCTTTTAAGCCCACACCTCCGTGGCATCCCT * * 965797 TTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTATGTCCATAACTCCGTGGCAC 1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA- * * * * 965862 TCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACTCCATGG 65 TCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCGTGG * * * * 965927 CA-C-CCTTTAAAGTGCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCA- 129 CACCTCCTTTGAAGTCCACAACTCCGTGGCA-CCTTTTCCTTTTAAGTCCACAACTCCGTGGCAC * * 965989 CCTTGTTCCTTTTAAG-TCCACAACTTTGTGGCACTTTTTCTTTTTAAGTCCACGACTCTGTGGC 193 CCTTGTTCCTTTTAAGCT-CACAACTCTGTGGCACCTTTTCTTTTTAAGTCCAC-ACTCT-TGGC * 966053 ACCCTTTTCCCTTTTAAGCCCACACCTCCGTGGCATCCCT 255 ACCTTTTTCCCTTTTAAGCCCACACCTCCGTGGCATCCCT * * * * 966093 TTTTCCTTTTATGTCCACAACTCCGTGGTACTCTTTTTCCTTTTAAGTCCACAACTCCGTAGCAC 1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA- * * ** * * 966158 CCTTTTCCCTTTTAACCCCACATCTCCGTAGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGC 65 TCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGC * * * * 966223 ACCTTGTTCCTTTTG-AGTCCACAACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACTCCTTGG 130 ACC----TCC-TTTGAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGG * * * * * 966287 CACCCTTTTTCCCTTTTAAGCCCACACCTCTGTGGCATCCCTTTTTCCTTTTAAGTCCATAACT- 190 CACCCTTGTT-CCTTTTAAGCTCACAACTCTGTGGCA--CC-TTTTCTTTTTAAGTCCA-CACTC * * * * * 966351 TTGGGGTACCCTTTTT-CCTTTTAAGTCTACAACTCCGTGGCA-CTCT 250 TT--GGCA-CCTTTTTCCCTTTTAAGCCCACACCTCCGTGGCATCCCT * * * 966397 TTTTCCTTTTAAGTCCATAACTCTGTGGCACCCTTTTTCTTTTTAAGTCCACAACTCCGTGGCA- 1 TTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCAT * * * 966461 C-----CCTTTGAAG-CCACAACTCCGTGACATCTTTTTCCTTTTAAGTCCACAACTTCGTGGCA 66 CTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA * * * * ** * 966520 CCTTGTTCCTTTTAAGTCCACAACTCCATAGCACCTTTTCTTTTTAAGTCCATGACTCTGTGGCA 131 CC----TCCTTTGAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCA 966585 CCCTT-TTCCTTTTTAAGC 192 CCCTTGTTCC-TTTTAAGC 966603 CTACACCTCC Statistics Matches: 704, Mismatches: 78, Indels: 50 0.85 0.09 0.06 Matches are distributed among these distances: 294 2 0.00 295 44 0.06 296 392 0.56 297 65 0.09 298 8 0.01 300 28 0.04 301 25 0.04 302 26 0.04 303 1 0.00 304 62 0.09 305 45 0.06 306 6 0.01 ACGTcount: A:0.18, C:0.32, G:0.12, T:0.38 Consensus pattern (294 bp): TTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCAT CTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA CCTCCTTTGAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCT TGTTCCTTTTAAGCTCACAACTCTGTGGCACCTTTTCTTTTTAAGTCCACACTCTTGGCACCTTT TTCCCTTTTAAGCCCACACCTCCGTGGCATCCCT Found at i:966565 original size:531 final size:524 Alignment explanation

Indices: 965478--966657 Score: 1819 Period size: 531 Copynumber: 2.2 Consensus size: 524 965468 TTTTTTCCAA * * * 965478 AAGTCCACAACTCCATGGTACCTTTTCTTTTTAAGTCCATGACTCTGTGGCACCTTTTTCCCTGT 1 AAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTTCCCTTT * * * * 965543 TAAGCCCATACCTCTGTGGCATCCTTTTTTCCTTTTAAGTCCACAACTCCGTGGCATTCTTTTTC 66 TAAGCCCACACCTCCGTGGCATCCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTC * ** * 965608 CTTTTAAGTCCACAACTCCGTGGCACCCTTTGAAGTCCACAACTCCGTGGCATCTTTTTCCTTTT 131 CTTTTAAGTCCACAACTCCGTAGCACCCTTTGAACCCCACAACTCCGTAGCATCTTTTTCCTTTT 965673 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCTCACAACTCTGTGGCACCTTTTCTTTTT 196 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCTCACAACTCTGTGGCACCTTTTCTTTTT * 965738 AAGTCCACACTCCTTGGCACCATTTTTCCCTTTTATGCCCACACCTCCGTGGCATCCCATTTTCC 261 AAGTCCACACTCCTTGGCACCATTTTTCCCTTTTAAGCCCACACCTCCGTGGCATCCCATTTTCC * * * 965803 TTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTATGTCCATAACTCCGTGGCACTCTTTT 326 TTTTAAGTCCACAACTCCGGGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTT 965868 TCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCCT 391 TCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCCT * * 965933 TTAAAGTGCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCC 456 TTAAAGTCCACAACTCCGTGACATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCC 965998 TTTT 521 TTTT *** * * 966002 AAGTCCACAACTTTGTGGCACTTTTTCTTTTTAAGTCCACGACTCTGTGGCACCCTTTTCCCTTT 1 AAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTTCCCTTT * * 966067 TAAGCCCACACCTCCGTGGCATCCCTTTTTCCTTTTATGTCCACAACTCCGTGGTACTCTTTTTC 66 TAAGCCCACACCTCCGTGGCATCCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTC * * 966132 CTTTTAAGTCCACAACTCCGTAGCACCCTTTTCCCTTTTAACCCCACATCTCCGTAGCATCTTTT 131 CTTTTAAGTCCACAACTCCGTAGCA-------CCCTTTGAACCCCACAACTCCGTAGCATCTTTT * 966197 TCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTGAG-TCCACAACTCTGTGGCACCTT 189 TCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCT-CACAACTCTGTGGCACCTT * * 966261 TTCTTTTTAAGTCCACGACTCCTTGGCACCCTTTTTCCCTTTTAAGCCCACACCTCTGTGGCATC 253 TTCTTTTTAAGTCCAC-ACTCCTTGGCACCATTTTTCCCTTTTAAGCCCACACCTCCGTGGCATC * * ** * * 966326 CCTTTTTCCTTTTAAGTCCATAACTTTGGGGTACCCTTTTTCCTTTTAAGTCTACAACTCCGTGG 317 CCATTTTCCTTTTAAGTCCACAACTCCGGGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGG * ** * 966391 CACTCTTTTTCCTTTTAAGTCCATAACTCTGTGGCACCCTTTTTCTTTTTAAGTCCACAACTCCG 382 CACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACTCCA * * * 966456 TGGCACCCTTTGAAG-CCACAACTCCGTGACATCTTTTTCCTTTTAAGTCCACAACTTCGTGGCA 447 TGGCACCCTTTAAAGTCCACAACTCCGTGACATCTTTTTCCTTTTAAGTCCACAACTCCATGGCA 966520 CCTTGTTCCTTTT 512 CCTTGTTCCTTTT * * 966533 AAGTCCACAACTCCATAGCACCTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTTCCTTTT 1 AAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTTCCCTTT * * * * 966598 TAAGCCTACACCTCCATGTCATCCCTTTTTCC-TTTAAGTCCACAACTTCGTGGCAC-CTTT 66 TAAGCCCACACCTCCGTGGCATCCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTT 966658 ATGTCCAATA Statistics Matches: 592, Mismatches: 55, Indels: 13 0.90 0.08 0.02 Matches are distributed among these distances: 524 140 0.24 529 4 0.01 530 22 0.04 531 250 0.42 532 176 0.30 ACGTcount: A:0.18, C:0.32, G:0.12, T:0.37 Consensus pattern (524 bp): AAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTTCCCTTT TAAGCCCACACCTCCGTGGCATCCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTC CTTTTAAGTCCACAACTCCGTAGCACCCTTTGAACCCCACAACTCCGTAGCATCTTTTTCCTTTT AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCTCACAACTCTGTGGCACCTTTTCTTTTT AAGTCCACACTCCTTGGCACCATTTTTCCCTTTTAAGCCCACACCTCCGTGGCATCCCATTTTCC TTTTAAGTCCACAACTCCGGGGCACCCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTT TCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCCT TTAAAGTCCACAACTCCGTGACATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCC TTTT Found at i:966735 original size:53 final size:52 Alignment explanation

Indices: 966662--966942 Score: 212 Period size: 51 Copynumber: 5.7 Consensus size: 52 966652 ACCTTTATGT * * * *** * 966662 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTCATCTTTAAGA 1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTT-AACCATCTTGAAGA * * * 966715 CCGATGTCATTGGCCTTGAATCAGTACATTGGCACCTTAACCATCTTGAAGA 1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTGAAGA * * * 966767 CCAATGTCGCTAGCCTTGAATCAGCACATTGG---C---ACC-T-TT-AAGT 1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTGAAGA * * * * * * * 966810 CCAATATCGCTAGCCTTGAATCAGCATATTGGCAACTTTACCATCTT-AAGT 1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTGAAGA * * * * ** 966861 CCAATATCGCTGGCCTTGAATCATCATATTGGCACCTT-GTC-TC-T-AAGA 1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTGAAGA * 966909 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA 1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCA 966943 TAAGCCCAAT Statistics Matches: 193, Mismatches: 27, Indels: 21 0.80 0.11 0.09 Matches are distributed among these distances: 43 33 0.17 44 2 0.01 45 1 0.01 46 4 0.02 48 35 0.18 49 6 0.03 50 2 0.01 51 41 0.21 52 37 0.19 53 32 0.17 ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30 Consensus pattern (52 bp): CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTGAAGA Found at i:966963 original size:39 final size:39 Alignment explanation

Indices: 966904--966981 Score: 129 Period size: 39 Copynumber: 2.0 Consensus size: 39 966894 ACCTTGTCTC * * 966904 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA 1 TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA * 966943 TAAGCCCAATATCACTGGCCTTGAATCAGCACATTGGCA 1 TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA 966982 CCTTCATCTT Statistics Matches: 36, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 39 36 1.00 ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23 Consensus pattern (39 bp): TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA Found at i:967104 original size:187 final size:181 Alignment explanation

Indices: 966779--967126 Score: 450 Period size: 187 Copynumber: 1.9 Consensus size: 181 966769 AATGTCGCTA * 966779 GCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA 1 GCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGACTTGAATCAGCATATTGGCA * * * * * * 966844 ACTTTACCATCTTAAGTCCAATATCGCTGGCCTTGAATCATCATATTGGCACCTTGTCTCTAAGA 66 ACTTTAACATCCTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTCTAAGA * 966909 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTG 131 CCAATGTCGCTGGCCATGAATCAGCACATTGGCATAAGCCCAATATCACTG * 966960 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG-TTGAACTTGAATCAGCAT 1 GCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTAG-ACTTGAATCAGCAT * * ** * 967024 ATTGGCATCTTTAACATTCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTGGCATTCTTC 59 ATTGGCAACTTTAACA-TCCTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTC * * 967089 T-TC-AAGTCTAATGTCGCTGGCCATGAATCAGCACATTG 122 TCTCTAAGACCAATGTCGCTGGCCATGAATCAGCACATTG 967127 TCATTCTTCG Statistics Matches: 142, Mismatches: 16, Indels: 12 0.84 0.09 0.07 Matches are distributed among these distances: 181 22 0.15 185 1 0.01 186 2 0.01 187 76 0.54 188 37 0.26 189 4 0.03 ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30 Consensus pattern (181 bp): GCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGACTTGAATCAGCATATTGGCA ACTTTAACATCCTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTCTAAGA CCAATGTCGCTGGCCATGAATCAGCACATTGGCATAAGCCCAATATCACTG Found at i:968907 original size:21 final size:22 Alignment explanation

Indices: 968881--968922 Score: 68 Period size: 22 Copynumber: 2.0 Consensus size: 22 968871 CACAGAACCA 968881 AAATTA-CTAAAATAATTTGAT 1 AAATTATCTAAAATAATTTGAT * 968902 AAATTATCTAAAATTATTTGA 1 AAATTATCTAAAATAATTTGA 968923 ATAGGTTTAT Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 21 6 0.32 22 13 0.68 ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40 Consensus pattern (22 bp): AAATTATCTAAAATAATTTGAT Found at i:969504 original size:34 final size:34 Alignment explanation

Indices: 969449--969544 Score: 147 Period size: 34 Copynumber: 2.8 Consensus size: 34 969439 CTTACAACTT * * 969449 TATCTTTTCAAAGGCTTAGATAAAACCTTAACAC 1 TATCTTTTCGAAGGCTTAGATAGAACCTTAACAC * * * 969483 TATCTTTTCGAAGACTAAGATAGAACCTTTACAC 1 TATCTTTTCGAAGGCTTAGATAGAACCTTAACAC 969517 TATCTTTTCGAAGGCTTAGATAGAACCT 1 TATCTTTTCGAAGGCTTAGATAGAACCT 969545 CTTAATCACC Statistics Matches: 55, Mismatches: 7, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 34 55 1.00 ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33 Consensus pattern (34 bp): TATCTTTTCGAAGGCTTAGATAGAACCTTAACAC Found at i:970031 original size:20 final size:20 Alignment explanation

Indices: 970005--970061 Score: 73 Period size: 20 Copynumber: 2.8 Consensus size: 20 969995 CATTGGGCCA 970005 AATGTATCGATACAATTCTTG 1 AATGTATCGATACAATTC-TG 970026 -ATGTATCGATACAA-TCTG 1 AATGTATCGATACAATTCTG 970044 AACTTGTATCGATACAAT 1 AA--TGTATCGATACAAT 970062 CGCATGGTTG Statistics Matches: 32, Mismatches: 0, Indels: 7 0.82 0.00 0.18 Matches are distributed among these distances: 18 2 0.06 19 3 0.09 20 14 0.44 21 13 0.41 ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35 Consensus pattern (20 bp): AATGTATCGATACAATTCTG Found at i:970053 original size:21 final size:19 Alignment explanation

Indices: 970006--970062 Score: 71 Period size: 21 Copynumber: 2.8 Consensus size: 19 969996 ATTGGGCCAA 970006 ATGTATCGATACAATTCTTG 1 ATGTATCGATACAA-TCTTG 970026 ATGTATCGATACAATC-TG 1 ATGTATCGATACAATCTTG 970044 AACTTGTATCGATACAATC 1 -A--TGTATCGATACAATC 970063 GCATGGTTGT Statistics Matches: 34, Mismatches: 0, Indels: 5 0.87 0.00 0.13 Matches are distributed among these distances: 18 2 0.06 19 3 0.09 20 14 0.41 21 15 0.44 ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35 Consensus pattern (19 bp): ATGTATCGATACAATCTTG Found at i:975636 original size:19 final size:18 Alignment explanation

Indices: 975589--975674 Score: 74 Period size: 19 Copynumber: 4.8 Consensus size: 18 975579 TTTCAAACTA * 975589 TTTGTATCGATACAAACAG 1 TTTGTATCGATACATA-AG * 975608 TAAATGTATCGATACATAAG 1 T--TTGTATCGATACATAAG 975628 TGTTGTATCGATAC--AA- 1 T-TTGTATCGATACATAAG 975644 --TGTATCGATACATAAG 1 TTTGTATCGATACATAAG 975660 TTTTGTATCGATACA 1 -TTTGTATCGATACA 975675 ATGTATCACT Statistics Matches: 55, Mismatches: 4, Indels: 16 0.73 0.05 0.21 Matches are distributed among these distances: 13 11 0.20 15 2 0.04 17 2 0.04 19 24 0.44 20 3 0.05 21 13 0.24 ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35 Consensus pattern (18 bp): TTTGTATCGATACATAAG Found at i:975649 original size:13 final size:13 Alignment explanation

Indices: 975631--975655 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 975621 ACATAAGTGT 975631 TGTATCGATACAA 1 TGTATCGATACAA 975644 TGTATCGATACA 1 TGTATCGATACA 975656 TAAGTTTTGT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32 Consensus pattern (13 bp): TGTATCGATACAA Found at i:975651 original size:32 final size:32 Alignment explanation

Indices: 975610--975681 Score: 135 Period size: 32 Copynumber: 2.2 Consensus size: 32 975600 ACAAACAGTA 975610 AATGTATCGATACATAAGTGTTGTATCGATAC 1 AATGTATCGATACATAAGTGTTGTATCGATAC * 975642 AATGTATCGATACATAAGTTTTGTATCGATAC 1 AATGTATCGATACATAAGTGTTGTATCGATAC 975674 AATGTATC 1 AATGTATC 975682 ACTACGAAGC Statistics Matches: 39, Mismatches: 1, Indels: 0 0.98 0.03 0.00 Matches are distributed among these distances: 32 39 1.00 ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36 Consensus pattern (32 bp): AATGTATCGATACATAAGTGTTGTATCGATAC Found at i:975724 original size:13 final size:13 Alignment explanation

Indices: 975706--975733 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 975696 GCCAAGGAAA 975706 TGTATCGATACAT 1 TGTATCGATACAT 975719 TGTATCGATACAT 1 TGTATCGATACAT 975732 TG 1 TG 975734 ATCTTTTGTA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39 Consensus pattern (13 bp): TGTATCGATACAT Found at i:975795 original size:20 final size:21 Alignment explanation

Indices: 975762--975804 Score: 79 Period size: 20 Copynumber: 2.1 Consensus size: 21 975752 TCCGAAAATT 975762 TTACCCAGATGTATCGATACA 1 TTACCCAGATGTATCGATACA 975783 TTACCCA-ATGTATCGATACA 1 TTACCCAGATGTATCGATACA 975803 TT 1 TT 975805 CAGGCATTTT Statistics Matches: 22, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 20 15 0.68 21 7 0.32 ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33 Consensus pattern (21 bp): TTACCCAGATGTATCGATACA Found at i:977069 original size:13 final size:13 Alignment explanation

Indices: 977051--977076 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 977041 CATTATTCAA 977051 TGTATCGATACAT 1 TGTATCGATACAT 977064 TGTATCGATACAT 1 TGTATCGATACAT 977077 CTGGGAAGTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38 Consensus pattern (13 bp): TGTATCGATACAT Found at i:977122 original size:20 final size:20 Alignment explanation

Indices: 977097--977181 Score: 87 Period size: 20 Copynumber: 4.6 Consensus size: 20 977087 TAACTAGATA * 977097 TATCGATACATT-TTGCATTG 1 TATCGATACATTGCT-CATTG 977117 TATCGATACATTGCTCATTG 1 TATCGATACATTGCTCATTG * 977137 TATTGATACATTG-T-A--- 1 TATCGATACATTGCTCATTG 977152 T-T-GATACATTGCTCATTG 1 TATCGATACATTGCTCATTG 977170 TATCGATACATT 1 TATCGATACATT 977182 TTACAATGTA Statistics Matches: 55, Mismatches: 2, Indels: 16 0.75 0.03 0.22 Matches are distributed among these distances: 13 9 0.16 14 2 0.04 15 2 0.04 18 2 0.04 19 2 0.04 20 37 0.67 21 1 0.02 ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44 Consensus pattern (20 bp): TATCGATACATTGCTCATTG Found at i:977158 original size:33 final size:33 Alignment explanation

Indices: 977112--977181 Score: 122 Period size: 33 Copynumber: 2.1 Consensus size: 33 977102 ATACATTTTG * 977112 CATTGTATCGATACATTGCTCATTGTATTGATA 1 CATTGTATCGATACATTGCTCATTGTATCGATA * 977145 CATTGTATTGATACATTGCTCATTGTATCGATA 1 CATTGTATCGATACATTGCTCATTGTATCGATA 977178 CATT 1 CATT 977182 TTACAATGTA Statistics Matches: 35, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 33 35 1.00 ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43 Consensus pattern (33 bp): CATTGTATCGATACATTGCTCATTGTATCGATA Found at i:977181 original size:13 final size:13 Alignment explanation

Indices: 977132--977162 Score: 62 Period size: 13 Copynumber: 2.4 Consensus size: 13 977122 ATACATTGCT 977132 CATTGTATTGATA 1 CATTGTATTGATA 977145 CATTGTATTGATA 1 CATTGTATTGATA 977158 CATTG 1 CATTG 977163 CTCATTGTAT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 18 1.00 ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45 Consensus pattern (13 bp): CATTGTATTGATA Found at i:979560 original size:51 final size:51 Alignment explanation

Indices: 979503--979670 Score: 187 Period size: 51 Copynumber: 3.3 Consensus size: 51 979493 ATTTTTCATC * 979503 TCGGGGATACTTCAATCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAA 1 TCGGGGATACTCCAATCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAA * * * * * ** ** 979554 TCGGGGATACTCCAA-CTCCGATTTTA-TTTCTAAAGCCTCGATTTACCGCAA 1 TCGGGGATACTCCAATC-CCGGTTTCATTTTC-AAAACATCAATTTTTCTTAA * * * 979605 CCGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAA 1 TCGGGGATACTCCAATCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAA 979656 TCGGGGATACTCCAA 1 TCGGGGATACTCCAA 979671 CTCTGATTTT Statistics Matches: 90, Mismatches: 23, Indels: 8 0.74 0.19 0.07 Matches are distributed among these distances: 50 5 0.06 51 82 0.91 52 3 0.03 ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33 Consensus pattern (51 bp): TCGGGGATACTCCAATCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAA Found at i:979680 original size:102 final size:102 Alignment explanation

Indices: 979504--979689 Score: 336 Period size: 102 Copynumber: 1.8 Consensus size: 102 979494 TTTTTCATCT * * * 979504 CGGGGATACTTCAATCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA 1 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA 979569 CTCCGATTTTATTTCTAAAGCCTCGATTTACCGCAAC 66 CTCCGATTTTATTTCTAAAGCCTCGATTTACCGCAAC 979606 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA 1 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA * 979671 CTCTGATTTTATTTCTAAA 66 CTCCGATTTTATTTCTAAA 979690 ATACTAAATT Statistics Matches: 80, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 102 80 1.00 ACGTcount: A:0.27, C:0.25, G:0.13, T:0.34 Consensus pattern (102 bp): CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA CTCCGATTTTATTTCTAAAGCCTCGATTTACCGCAAC Found at i:979702 original size:51 final size:51 Alignment explanation

Indices: 979503--979722 Score: 164 Period size: 51 Copynumber: 4.3 Consensus size: 51 979493 ATTTTTCATC * * * * 979503 TCGGGGATACTTCAA-TCCCGGTTTCATTT-TCAAAACA-TCAATTTTTCTTAA 1 TCGGGGATACTCCAACT-CCGATTTTATTTCT-AAAACACT-AAATTTTCTTAA * ** * ** 979554 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAGC-CTCGATTTACCGCAA 1 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTAAATTT-TCTTAA * * * * * * 979605 CCGGGGATACTCCAA-TCCCGGTTTCATCTCCAAAACA-TCAATTTTTCTTAA 1 TCGGGGATACTCCAACT-CCGATTTTATTTCTAAAACACT-AAATTTTCTTAA * * * 979656 TCGGGGATACTCCAACTCTGATTTTATTTCTAAAATACTAAATTTTCATAA 1 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTAAATTTTCTTAA * 979707 TTGGGGATACTCCAAC 1 TCGGGGATACTCCAAC 979723 CCCGTCATTT Statistics Matches: 128, Mismatches: 32, Indels: 18 0.72 0.18 0.10 Matches are distributed among these distances: 50 4 0.03 51 117 0.91 52 7 0.05 ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35 Consensus pattern (51 bp): TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTAAATTTTCTTAA Found at i:979713 original size:102 final size:102 Alignment explanation

Indices: 979504--979726 Score: 304 Period size: 102 Copynumber: 2.2 Consensus size: 102 979494 TTTTTCATCT * * * 979504 CGGGGATACTTCAATCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA 1 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA * ** * 979569 CTCCGATTTTATTTCTAAAGCCTCGATTTACCGCAAC 66 CTCCGATTTTATTTCTAAAGACTAAATTTACCACAAC 979606 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA 1 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA * * * * * 979671 CTCTGATTTTATTTCTAAAATACTAAATTT-TCATAAT 66 CTCCGATTTTATTTCT-AAAGACTAAATTTACCACAAC * * 979708 TGGGGATACTCCAACCCCG 1 CGGGGATACTCCAATCCCG 979727 TCATTTCATT Statistics Matches: 106, Mismatches: 14, Indels: 2 0.87 0.11 0.02 Matches are distributed among these distances: 102 97 0.92 103 9 0.08 ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34 Consensus pattern (102 bp): CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA CTCCGATTTTATTTCTAAAGACTAAATTTACCACAAC Found at i:979739 original size:28 final size:30 Alignment explanation

Indices: 979706--979782 Score: 117 Period size: 28 Copynumber: 2.7 Consensus size: 30 979696 AATTTTCATA 979706 ATTGGGGATACTCCAACCCCGTCATTT-C- 1 ATTGGGGATACTCCAACCCCGTCATTTACG * 979734 ATTGGGGATACTCCAACCCCGTTATTTACG 1 ATTGGGGATACTCCAACCCCGTCATTTACG 979764 A--GGGGATACTCCAACCCCG 1 ATTGGGGATACTCCAACCCCG 979783 GCTTTATATC Statistics Matches: 46, Mismatches: 1, Indels: 4 0.90 0.02 0.08 Matches are distributed among these distances: 28 44 0.96 29 1 0.02 30 1 0.02 ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25 Consensus pattern (30 bp): ATTGGGGATACTCCAACCCCGTCATTTACG Found at i:979856 original size:28 final size:28 Alignment explanation

Indices: 979819--979891 Score: 85 Period size: 28 Copynumber: 2.6 Consensus size: 28 979809 TTTATAATCG * * 979819 GGGGGTACTCTAACCCCGTTATGTTATCA 1 GGGGATACTCCAACCCCGTTAT-TTATCA * * * 979848 -GGGATACTCCAATCCCGTTATTTCTGA 1 GGGGATACTCCAACCCCGTTATTTATCA 979875 GGGGATACTCCAACCCC 1 GGGGATACTCCAACCCC 979892 AATTTTATTT Statistics Matches: 37, Mismatches: 6, Indels: 3 0.80 0.13 0.07 Matches are distributed among these distances: 27 4 0.11 28 33 0.89 ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27 Consensus pattern (28 bp): GGGGATACTCCAACCCCGTTATTTATCA Found at i:979908 original size:110 final size:108 Alignment explanation

Indices: 979658--979939 Score: 311 Period size: 110 Copynumber: 2.6 Consensus size: 108 979648 TTTCTTAATC * * ** * 979658 GGGGATACTCCAACTCTGATTTTATTTCTAAAATACTA-AATTTTCATAATTGGGGATACTCCAA 1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACTATTTTTTTCATAATGGGGGATACTCCAA ** 979722 CCCCGTCATTTCATTGGGGATACTCCAACCCCGTTATTTACGA 66 CCCCGTCATTTCATCAGGGATACTCCAACCCCGTTATTTACGA ** * * * * * * 979765 GGGGATACTCCAACCCCGGCTTTATATCCAAAATATTGATTTTTTTTATAATCGGGGGGTACTCT 1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACT-ATTTTTTTCATAAT-GGGGGATACTCC * * 979830 AACCCCGTTATGTT-ATCAGGGATACTCCAATCCCGTTATTT-CTGA 64 AACCCCGTCAT-TTCATCAGGGATACTCCAACCCCGTTATTTAC-GA * * * * 979875 GGGGATACTCCAACCCCAATTTTATTTCTAAAATACTA-ATTTTTCACAATCGGGGATACTCCAA 1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACTATTTTTTTCATAATGGGGGATACTCCAA 979939 C 66 C 979940 TCCGATTGTA Statistics Matches: 141, Mismatches: 29, Indels: 10 0.78 0.16 0.06 Matches are distributed among these distances: 107 42 0.30 108 10 0.07 109 11 0.08 110 76 0.54 111 2 0.01 ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33 Consensus pattern (108 bp): GGGGATACTCCAACCCCGATTTTATTTCTAAAATACTATTTTTTTCATAATGGGGGATACTCCAA CCCCGTCATTTCATCAGGGATACTCCAACCCCGTTATTTACGA Found at i:979952 original size:51 final size:50 Alignment explanation

Indices: 979875--979991 Score: 146 Period size: 51 Copynumber: 2.3 Consensus size: 50 979865 TTATTTCTGA * * * 979875 GGGGATACTCCAACCCCAATTTTATTTCTAAA-ATACTAATTTTTCACAATC 1 GGGGATACTCCAACCCCAATTGTATTTCCAAACAT-C-AATTTCTCACAATC * * 979926 GGGGATACTCCAACTCCGATTGTATTTCCAAAGCATCAATTTCTCACAATC 1 GGGGATACTCCAACCCCAATTGTATTTCCAAA-CATCAATTTCTCACAATC * 979977 GGGGATATTCCAACC 1 GGGGATACTCCAACC 979992 ACGTTATTTT Statistics Matches: 57, Mismatches: 7, Indels: 4 0.84 0.10 0.06 Matches are distributed among these distances: 51 54 0.95 52 1 0.02 53 2 0.04 ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31 Consensus pattern (50 bp): GGGGATACTCCAACCCCAATTGTATTTCCAAACATCAATTTCTCACAATC Found at i:980008 original size:79 final size:79 Alignment explanation

Indices: 979925--980070 Score: 197 Period size: 79 Copynumber: 1.8 Consensus size: 79 979915 TTTTCACAAT * * * 979925 CGGGGATACTCCAA-CTCCGATTGTATTTCCAAAGCATCAA-TTTCTCACAATCGGGGATATTCC 1 CGGGGATACTCCAACCTCCGACT-CATTTCCAAAGCATCAATTTTC-CACAATCGGGGATACTCC 979988 AACCACGTTATTTTCG 64 AACCACGTTATTTTCG * * * * 980004 CGGGGATACTCCAACCTCGGCCTCATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCCAA 1 CGGGGATACTCCAACCTCCGACTCATTTCCAAAGCATCAATTTTCCACAATCGGGGATACTCCAA 980069 CC 66 CC 980071 CCGATTTTTA Statistics Matches: 58, Mismatches: 7, Indels: 4 0.84 0.10 0.06 Matches are distributed among these distances: 79 49 0.84 80 9 0.16 ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27 Consensus pattern (79 bp): CGGGGATACTCCAACCTCCGACTCATTTCCAAAGCATCAATTTTCCACAATCGGGGATACTCCAA CCACGTTATTTTCG Found at i:990112 original size:21 final size:21 Alignment explanation

Indices: 990088--990129 Score: 59 Period size: 21 Copynumber: 2.0 Consensus size: 21 990078 GCAAAAGCAC 990088 AAAAAATG-AAAAGAAAAATA 1 AAAAAATGCAAAAGAAAAATA * * 990108 AAAAAGTGCAAAAGTAAAATA 1 AAAAAATGCAAAAGAAAAATA 990129 A 1 A 990130 GGAAAGGGAA Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 20 7 0.37 21 12 0.63 ACGTcount: A:0.74, C:0.02, G:0.12, T:0.12 Consensus pattern (21 bp): AAAAAATGCAAAAGAAAAATA Found at i:991657 original size:27 final size:27 Alignment explanation

Indices: 991534--992296 Score: 972 Period size: 27 Copynumber: 27.7 Consensus size: 27 991524 TTTCTTTTCA * 991534 AAGTCCACAACTCCGTGGCATCCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT 991561 AAAGTCCACAACTCCGTGGCACCCTTTT 1 -AAGTCCACAACTCCGTGGCACCCTTTT 991589 AAAGTCCACAACTCCGTGGCAGCCCTTTTT 1 -AAGTCCACAACTCCGTGGCA-CCC-TTTT 991619 AAGTCCACAACTCCGTGGCACCCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * * * 991646 AAGTCCATAACTCCGTGACAACCATTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * * 991673 AAGTCCACAACTCCGCGGCAACCTTCT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * 991700 AAGTCCACAACTCCGTGACAACCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * 991727 AAGTCCACAACTCCGTGGCAACCTATTA 1 AAGTCCACAACTCCGTGGCACCCT-TTT * 991755 AAGTCCACAACTTCGTGGCAGCCCTTTTT 1 AAGTCCACAACTCCGTGGCA-CCC-TTTT * * 991784 ATGTTCACAACTCCGTGGCACCCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * 991811 AAGCCCACAACTCCGTGGCAACCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * * 991838 AAGTTCACAACTCCGTGACAACCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT ** * * 991865 AAGTCCACAACTCTTTGGAAACCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * 991892 AAGTCCACAACTCCGTGGCAACCTCTTA 1 AAGTCCACAACTCCGTGGCACCCT-TTT 991920 AAGTCCACAACTCCGTGGCACCCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * 991947 AAGTCCACAACTCCGTGGCAACCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * 991974 AAAGTCCACAACTCCGTGGCA-TCTTTT 1 -AAGTCCACAACTCCGTGGCACCCTTTT * 992001 CAAAGTCCACAACTCCGTGGCATCCTTTT 1 --AAGTCCACAACTCCGTGGCACCCTTTT 992030 AAAGTCCACAACTCCGTGGCACCCTTTT 1 -AAGTCCACAACTCCGTGGCACCCTTTT * * * 992058 AAAGTCCACAACTTCGTAGCATCCTTTT 1 -AAGTCCACAACTCCGTGGCACCCTTTT * * * 992086 AAGTCCACAACTTCGTGACACCCTTTA 1 AAGTCCACAACTCCGTGGCACCCTTTT * 992113 AAGTCCACAACTCCATGGCACCCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * 992140 AAAGTCCATAACTCCGTGGCACCTTTTT 1 -AAGTCCACAACTCCGTGGCACCCTTTT 992168 AAGTCCACAACTCCGTGGCACCCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * 992195 AAGTCCACAACTCCGTGGCACTCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * * 992222 AAAGTCCATC-ACTCTGTGGTACCCTTTT 1 -AAGTCCA-CAACTCCGTGGCACCCTTTT * * 992250 AAGTCCACAACTCTGTGGCATCCTTTT 1 AAGTCCACAACTCCGTGGCACCCTTTT * 992277 AAGTCCACAACTCCATGGCA 1 AAGTCCACAACTCCGTGGCA 992297 GCACCCTTAT Statistics Matches: 655, Mismatches: 67, Indels: 27 0.87 0.09 0.04 Matches are distributed among these distances: 26 1 0.00 27 361 0.55 28 238 0.36 29 50 0.08 30 5 0.01 ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27 Consensus pattern (27 bp): AAGTCCACAACTCCGTGGCACCCTTTT Found at i:991807 original size:165 final size:163 Alignment explanation

Indices: 991534--992296 Score: 1000 Period size: 165 Copynumber: 4.6 Consensus size: 163 991524 TTTCTTTTCA * * 991534 AAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACA 1 AAGTCCACAACTCCGTGGCAACCTTTTAAAGTCCACAACTCCGTGGCAACC-TTTAAAGTCCACA * * 991599 ACTCCGTGGCAGCCCTTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCATAACTCCGTG 65 ACTTCGTGGCA-CCC-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTG * * * * 991663 ACAACCATTTAAGTCCACAACTCCGCGGCAACCTTCT 128 GC-ACCTTTTAAGTCCACAACTCCGTGGCAACCTTTT * 991700 AAGTCCACAACTCCGTGACAACCTTTT-AAGTCCACAACTCCGTGGCAACCTATTAAAGTCCACA 1 AAGTCCACAACTCCGTGGCAACCTTTTAAAGTCCACAACTCCGTGGCAACCT-TTAAAGTCCACA * * * 991764 ACTTCGTGGCAGCCCTTTTTATGTTCACAACTCCGTGGCACCCTTTT-AAGCCCACAACTCCGTG 65 ACTTCGTGGCA-CCC-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTG * * 991828 GCAACCTTTTAAGTTCACAACTCCGTGACAACCTTTT 128 GC-ACCTTTTAAGTCCACAACTCCGTGGCAACCTTTT ** * 991865 AAGTCCACAACTCTTTGGAAACCTTTT-AAGTCCACAACTCCGTGGCAACCTCTTAAAGTCCACA 1 AAGTCCACAACTCCGTGGCAACCTTTTAAAGTCCACAACTCCGTGGCAACCT-TTAAAGTCCACA * * 991929 ACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAACCTTTTAAAGTCCACAACTCCGTGGC 65 ACTTCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGC * * 991994 ATCTTTTCAAAGTCCACAACTCCGTGGCATCCTTTT 130 ACCTTTT--AAGTCCACAACTCCGTGGCAACCTTTT * * * * * 992030 AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTTCGTAGCATCCTTTTAAGTCCACA 1 -AAGTCCACAACTCCGTGGCAACCTTTTAAAGTCCACAACTCCGTGGCAACCTTTAAAGTCCACA * * * * 992095 ACTTCGTGACACCCTTTAAAGTCCACAACTCCATGGCACCCTTTTAAAGTCCATAACTCCGTGGC 65 ACTTCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGC * 992160 ACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTT 130 ACC-TTTTAAGTCCACAACTCCGTGGCAACCTTTT * * * * 992195 AAGTCCACAACTCCGTGGC-ACTCTTTTAAAGTCCATC-ACTCTGTGGTACCCTTTTAAGTCCAC 1 AAGTCCACAACTCCGTGGCAAC-CTTTTAAAGTCCA-CAACTCCGTGGCAACCTTTAAAGTCCAC * * 992258 AAC-TCTGTGGCATCCTTTTAAGTCCACAACTCCATGGCA 64 AACTTC-GTGGCACCCTTTTAAGTCCACAACTCCGTGGCA 992297 GCACCCTTAT Statistics Matches: 534, Mismatches: 53, Indels: 22 0.88 0.09 0.04 Matches are distributed among these distances: 163 37 0.07 164 108 0.20 165 244 0.46 166 120 0.22 167 25 0.05 ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27 Consensus pattern (163 bp): AAGTCCACAACTCCGTGGCAACCTTTTAAAGTCCACAACTCCGTGGCAACCTTTAAAGTCCACAA CTTCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCA CCTTTTAAGTCCACAACTCCGTGGCAACCTTTT Found at i:992413 original size:86 final size:85 Alignment explanation

Indices: 992307--992939 Score: 563 Period size: 86 Copynumber: 7.1 Consensus size: 85 992297 GCACCCTTAT * * * * 992307 AAAGCCCACAAGTTAGTGGCACCATTTCAAAGCCCATAAGTCAGTGGCATCATTTCAAAGCCCAC 1 AAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCAC * * 992372 AAATCAGTGGCA-TCATTTC 66 AAGTCAGTGGCACCCATTTC * ** * 992391 AAAGCGCACACAAGTC-GATGGCAACTCATTTGAAAGCTCACACAAGTTGGTGGCAACCCATTTC 1 AAAGC-C-CACAAGTCAG-TGGC-AC-CATTTCAAAGC-C-CACAAGTCAGTGGC-A-CCTTTTC ** * 992455 AAAGCCCACACAAGTTGGTGGAAACCCATTTC 57 AAAG-CC-CACAAGTCAGTGG-CACCCATTTC * * * * 992487 AAAGCCCACACAAGTCAGTGGCAACTCATTTGAAAGCCCACACAAGTAAATGGCAACCCGTTTCA 1 AAAG-CC-CACAAGTCAGTGGC-AC-CATTTCAAAG-CC-CACAAGTCAGTGGC-A-CCTTTTCA * 992552 AAGCTCACACAAGTCGGTGGCAACCCATTTC 58 AAGC-C-CACAAGTCAGTGGC-ACCCATTTC * * * * 992583 AAAACCCACAAGTCAGTGGCACCCTTCCGAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCAC 1 AAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCAC * * 992648 AAGTTAGTGGTAGACCC-TTTC 66 AAGTCAGTGG--CACCCATTTC * * * * 992669 AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGACAATGGCATACCCTTTCAAAGCCC 1 AAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGC--ACCTTTTCAAAGCCC * 992734 ACAAGTCAGTGGCA-CCTTTTC 64 ACAAGTCAGTGGCACCCATTTC * * * * * 992755 AAAGCCCACAAGACAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCATCCTTTTAAAAGCCCA 1 AAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCA ** * 992820 CAAGTCAGTGGCATTCTTTTC 65 CAAGTCAGTGGCACCCATTTC * * 992841 AAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGGTGGCACCTTTTCAAAGTCCA 1 AAAGCCCACAAGTCAGTGGCA-CCATTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAG-CC- * * * 992906 CACAAGTCGGTGGCAACTCTTTTC 63 CACAAGTCAGTGGC-ACCCATTTC * 992930 AAAGACCACA 1 AAAGCCCACA 992940 TAAGTTAGGG Statistics Matches: 469, Mismatches: 51, Indels: 53 0.82 0.09 0.09 Matches are distributed among these distances: 84 6 0.01 85 30 0.06 86 154 0.33 87 34 0.07 88 59 0.13 89 19 0.04 90 23 0.05 91 3 0.01 92 16 0.03 93 4 0.01 94 24 0.05 95 4 0.01 96 90 0.19 97 3 0.01 ACGTcount: A:0.32, C:0.30, G:0.18, T:0.21 Consensus pattern (85 bp): AAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCAC AAGTCAGTGGCACCCATTTC Found at i:992427 original size:32 final size:32 Alignment explanation

Indices: 992357--992944 Score: 274 Period size: 32 Copynumber: 19.7 Consensus size: 32 992347 TCAGTGGCAT * 992357 CATTTCAAAGCCCACA-AA-TC-AGTGGC-A-T 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * 992385 CATTTCAAAGCGCACACAAGTCGATGGCAACT 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * * * * 992417 CATTTGAAAGCTCACACAAGTTGGTGGCAACC 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * * * 992449 CATTTCAAAGCCCACACAAGTTGGTGGAAACC 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * 992481 CATTTCAAAGCCCACACAAGTC-AGTGGCAACT 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * ** 992513 CATTTGAAAGCCCACACAAGTAAATGGCAACC 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * * * 992545 CGTTTCAAAGCTCACACAAGTCGGTGGCAACC 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * 992577 CATTTCAAA-ACC-CACAAGTC-AGTGGC-ACC 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * 992606 C-TTCCGAAG-CC-CACAAGTC-AGTGGC-A-C 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * * 992633 CTTTTCAAAG-CC-CACAAGT-TAGTGGTAGACC 1 CATTTCAAAGCCCACACAAGTCGA-TGGCA-ACC 992664 C-TTTCAAAG-CC-CACAAGTC-AGTGGC-A-C 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * * 992691 CTTTTCAAAG-CC-CACAAGACAATGGCATACC 1 CATTTCAAAGCCCACACAAGTCGATGGCA-ACC 992722 C-TTTCAAAG-CC-CACAAGTC-AGTGGC-A-C 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * * 992749 CTTTTCAAAG-CC-CACAAGAC-AGTGGC-A-T 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * * 992777 CTTTTCAAAG-CC-CACAAGTCAATGGC-ATC 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * * ** 992806 CTTTTAAAAG-CC-CACAAGTC-AGTGGC-ATT 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * 992835 CTTTTCAAAG-CC-CACAAGTC-AGTGGC-ATC 1 CATTTCAAAGCCCACACAAGTCGA-TGGCAACC * * 992864 CTTTTCAAAG-CC-CACAAGTCGGTGGC-A-C 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * * * * 992892 CTTTTCAAAGTCCACACAAGTCGGTGGCAACT 1 CATTTCAAAGCCCACACAAGTCGATGGCAACC * * * 992924 CTTTTCAAAGACCACATAAGT 1 CATTTCAAAGCCCACACAAGT 992945 TAGGGGCACC Statistics Matches: 484, Mismatches: 46, Indels: 56 0.83 0.08 0.10 Matches are distributed among these distances: 27 6 0.01 28 140 0.29 29 88 0.18 30 77 0.16 31 8 0.02 32 164 0.34 33 1 0.00 ACGTcount: A:0.32, C:0.30, G:0.18, T:0.21 Consensus pattern (32 bp): CATTTCAAAGCCCACACAAGTCGATGGCAACC Found at i:992630 original size:58 final size:56 Alignment explanation

Indices: 991896--992939 Score: 583 Period size: 58 Copynumber: 18.1 Consensus size: 56 991886 CCTTTTAAGT * * * * * * * * * 991896 CCACAACTCCGTGGCAACCTCTT-AAAGTCCACAACTCCGTGGCACCCTTT-TAAGT 1 CCACAAGTCAGTGGCACCCT-TTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * * * * * * * * 991951 CCACAACTCCGTGGCAACCTTTTAAAGTCCACAACTCCGTGGCATCTTTTCAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * * * * * * * * 992007 CCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * * * * * * * 992063 CCACAACTTC-GTAGCATCCTTT-TAAGTCCACAACTTC-GTGACACCCTTT-AAAGT 1 CCACAA-GTCAGTGGCACCCTTTCAAAGCCCACAA-GTCAGTGGCACCATTTCAAAGC * * * * * * ** * 992117 CCACAACTCCA-TGGCACCCTTTTAAAGTCCATAACTCCGTGGCACC-TTTTTAAGT 1 CCACAAGT-CAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * * * * * * 992172 CCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACTC-TTTTAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CATTTCAAAGC * * * * * * * * * 992227 CCATC-ACTCTGTGGTACCCTTT-TAAGTCCACAACTCTGTGGCATCC-TTT-TAAGT 1 CCA-CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCATTTCAAAGC * * 992281 CCACAACTCCA-TGGCAGCACCCTTAT-AAAGCCCACAAGTTAGTGGCACCATTTCAAAGC 1 CCACAAGT-CAGT-G--GCACCCTT-TCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * * * 992340 CCATAAGTCAGTGGCATCATTTCAAAGCCCACAAATCAGTGGCATCATTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * ** 992396 GCACACAAGTC-GATGGCAACTCATTTGAAAGCTCACACAAGTTGGTGGCAACCCATTTCAAAGC 1 -C-CACAAGTCAG-TGGC-AC-CCTTTCAAAGC-C-CACAAGTCAGTGGC-A-CCATTTCAAAG- 992460 C 56 C ** * * 992461 CACACAAGTTGGTGGAAACCCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTGAAAGCC 1 C-CACAAGTCAGTGG-CACCC-TTTCAAAG-CC-CACAAGTCAGTGGC-AC-CATTTCAAAG-C * * * * 992525 CACACAAGTAAATGGCAACCCGTTTCAAAGCTCACACAAGTCGGTGGCAACCCATTTCAAAAC 1 C-CACAAGTCAGTGGC-ACCC-TTTCAAAGC-C-CACAAGTCAGTGGC-A-CCATTTCAAAGC * * * 992588 CCACAAGTCAGTGGCACCCTTCCGAAGCCCACAAGTCAGTGGCACCTTTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * 992644 CCACAAGTTAGTGGTAGACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGC 1 CCACAAGTCAGTGG--CACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * 992702 CCACAAGACAATGGCATACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGC 1 CCACAAGTCAGTGGC--ACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC * * * * * * 992760 CCACAAGACAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCATCCTTTTAAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCATTTCAAAGC * * * 992817 CCACAAGTCAGTGGCATTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGC 1 CCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTCAGTGGCA-CCATTTCAAAGC * * * * * 992875 CCACAAGTCGGTGGCACCTTTTCAAAGTCCACACAAGTCGGTGGCAACTCTTTTCAAAGA 1 CCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGC-AC-CATTTCAAAGC 992935 CCACA 1 CCACA 992940 TAAGTTAGGG Statistics Matches: 845, Mismatches: 93, Indels: 97 0.82 0.09 0.09 Matches are distributed among these distances: 53 2 0.00 54 60 0.07 55 159 0.19 56 162 0.19 57 50 0.06 58 208 0.25 59 26 0.03 60 33 0.04 61 5 0.01 62 23 0.03 63 6 0.01 64 107 0.13 65 4 0.00 ACGTcount: A:0.29, C:0.31, G:0.16, T:0.23 Consensus pattern (56 bp): CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGC Found at i:992751 original size:27 final size:28 Alignment explanation

Indices: 991896--992939 Score: 597 Period size: 28 Copynumber: 36.2 Consensus size: 28 991886 CCTTTTAAGT * * * * 991896 CCACAACTCCGTGGCAACCTCTT-AAAGT 1 CCACAAGTCAGTGGCACCCT-TTCAAAGC * * * * 991924 CCACAACTCCGTGGCACCCTTT-TAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * * 991951 CCACAACTCCGTGGCAACCTTTTAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * * 991979 CCACAACTCCGTGGCATCTTTTCAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * * 992007 CCACAACTCCGTGGCATCCTTTTAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * 992035 CCACAACTCCGTGGCACCCTTTTAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * * 992063 CCACAACTTC-GTAGCATCCTTT-TAAGT 1 CCACAA-GTCAGTGGCACCCTTTCAAAGC * * * 992090 CCACAACTTC-GTGACACCCTTT-AAAGT 1 CCACAA-GTCAGTGGCACCCTTTCAAAGC * * * 992117 CCACAACTCCA-TGGCACCCTTTTAAAGT 1 CCACAAGT-CAGTGGCACCCTTTCAAAGC * * * ** * 992145 CCATAACTCCGTGGCA-CCTTTTTAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * 992172 CCACAACTCCGTGGCACCCTTT-TAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * * 992199 CCACAACTCCGTGGCACTCTTTTAAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * * * 992227 CCATC-ACTCTGTGGTACCCTTT-TAAGT 1 CCA-CAAGTCAGTGGCACCCTTTCAAAGC * * * * * 992254 CCACAACTCTGTGGCATCCTTT-TAAGT 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * 992281 CCACAACTCCA-TGGCAGCACCCTTAT-AAAGC 1 CCACAAGT-CAGT-G--GCACCCTT-TCAAAGC * * 992312 CCACAAGTTAGTGGCACCATTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * 992340 CCATAAGTCAGTGGCATCATTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * 992368 CCACAAATCAGTGGCATCATTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * 992396 GCACACAAGTC-GATGGCAACTCATTTGAAAGC 1 -C-CACAAGTCAG-TGGC-AC-CCTTTCAAAGC ** 992428 TCACACAAGTTGGTGGCAACCCATTTCAAAGCC 1 -C-CACAAGTCAGTGGC-ACCC-TTTCAAAG-C ** * 992461 CACACAAGTTGGTGGAAACCCATTTCAAAGCC 1 C-CACAAGTCAGTGG-CACCC-TTTCAAAG-C * * 992493 CACACAAGTCAGTGGCAACTCATTTGAAAGCC 1 C-CACAAGTCAGTGGC-AC-CCTTTCAAAG-C * * 992525 CACACAAGTAAATGGCAACCCGTTTCAAAGC 1 C-CACAAGTCAGTGGC-ACCC-TTTCAAAGC * * 992556 TCACACAAGTCGGTGGCAACCCATTTCAAAAC 1 -C-CACAAGTCAGTGGC-ACCC-TTTCAAAGC * * 992588 CCACAAGTCAGTGGCACCCTTCCGAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * 992616 CCACAAGTCAGTGGCACCTTTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * 992644 CCACAAGTTAGTGGTAGACCCTTTCAAAGC 1 CCACAAGTCAGTGG--CACCCTTTCAAAGC * 992674 CCACAAGTCAGTGGCACCTTTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * 992702 CCACAAGACAATGGCATACCCTTTCAAAGC 1 CCACAAGTCAGTGGC--ACCCTTTCAAAGC * 992732 CCACAAGTCAGTGGCACCTTTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * 992760 CCACAAGACAGTGGCATCTTTTCAAAGC 1 CCACAAGTCAGTGGCACCCTTTCAAAGC * * * 992788 CCACAAGTCAATGGCATCCTTTTAAAAGC 1 CCACAAGTCAGTGGCA-CCCTTTCAAAGC * * 992817 CCACAAGTCAGTGGCATTCTTTTCAAAGC 1 CCACAAGTCAGTGGCA-CCCTTTCAAAGC * 992846 CCACAAGTCAGTGGCATCCTTTTCAAAGC 1 CCACAAGTCAGTGGCA-CCCTTTCAAAGC * * 992875 CCACAAGTCGGTGGCACCTTTTCAAAGTC 1 CCACAAGTCAGTGGCACCCTTTCAAAG-C * * * 992904 CACACAAGTCGGTGGCAACTCTTTTCAAAGA 1 C-CACAAGTCAGTGGC-AC-CCTTTCAAAGC 992935 CCACA 1 CCACA 992940 TAAGTTAGGG Statistics Matches: 880, Mismatches: 97, Indels: 76 0.84 0.09 0.07 Matches are distributed among these distances: 26 2 0.00 27 160 0.18 28 357 0.41 29 90 0.10 30 101 0.11 31 20 0.02 32 147 0.17 33 3 0.00 ACGTcount: A:0.29, C:0.31, G:0.16, T:0.23 Consensus pattern (28 bp): CCACAAGTCAGTGGCACCCTTTCAAAGC Found at i:993113 original size:21 final size:21 Alignment explanation

Indices: 993087--993159 Score: 56 Period size: 21 Copynumber: 3.3 Consensus size: 21 993077 CTAGCCTCGA 993087 ATTAGCACATTGTCCACCTTT 1 ATTAGCACATTGTCCACCTTT * *** * 993108 ATTAGCTCAATGTCGTTGGCCTTGA 1 ATTAGCAC-AT-T-GTCCACCTT-T * 993133 ATTAGCATATTGTCCACCTTT 1 ATTAGCACATTGTCCACCTTT 993154 ATTAGC 1 ATTAGC 993160 TCAATGTCAC Statistics Matches: 37, Mismatches: 11, Indels: 8 0.66 0.20 0.14 Matches are distributed among these distances: 21 13 0.35 22 8 0.22 23 2 0.05 24 8 0.22 25 6 0.16 ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38 Consensus pattern (21 bp): ATTAGCACATTGTCCACCTTT Found at i:993244 original size:48 final size:46 Alignment explanation

Indices: 993029--993276 Score: 282 Period size: 46 Copynumber: 5.3 Consensus size: 46 993019 AAGTCCGATA * * * 993029 TCGCTGGCATTGAATCAGCATATTG-GCACCTTTATTAGCTCAATG 1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATG * * * 993074 TCGCTAGCCTCGAATTAGCACATTGTCCACCTTTATTAGCTCAATG 1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATG * * * 993120 TCGTTGGCCTTGAATTAGCATATTGTCCACCTTTATTAGCTCAATG 1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATG * * * * 993166 TCACTGGCCTTAAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG 1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTT--ATTAGCTCAATG * * * ** 993214 TCACTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTTGATG 1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTT--ATTAGCTCAATG * 993262 TCGTTGGCCTTGAAT 1 TCGCTGGCCTTGAAT 993277 TGGATGAATT Statistics Matches: 178, Mismatches: 22, Indels: 3 0.88 0.11 0.01 Matches are distributed among these distances: 45 20 0.11 46 89 0.50 48 69 0.39 ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35 Consensus pattern (46 bp): TCGCTGGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATG Found at i:994226 original size:476 final size:476 Alignment explanation

Indices: 993292--1003406 Score: 11559 Period size: 476 Copynumber: 21.4 Consensus size: 476 993282 GAATTTTTAT * * * 993292 TTTAAA-GAAGATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCATTATCATTTATCT 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * * 993356 TAATAAAGAGAATGTGTCTGTAGTGCCCT-ATCACAAAATGAGTAT-AA-ATCATCAGTAGAATC 66 TAATGAGGAGAATGTGTTTATAGTG-CCTAATCACAAAATGA--ATGAAGATCATTACTAGAATC * ** * ** 993418 TATGTTTGTCTTTTTTGAGGTACGAACTTAGACTTTACAAAAATTGGTAAAGAAAAAAGCCTTTC 128 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTC ** * * * * * * * * 993483 TTAAGAAACCAGAGCGTCAATATCGTATATCCTATTGAGAAGGCTATGTTTGTGGTGCTTAATCC 192 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC * * * * 993548 TAAAAAGAATAGGGATTAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT 257 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT ** * ** ** * * 993613 ATCAAAAATTATGGAAAGAAAAGCTTTTCCTGTGACATTATTGCATCAATGTCATGTATCATATT 322 ATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAAT * * * * * * * * 993678 GATGAGACTGTGTTTTCGGTTCCTATTCTTGAAAAGAATGGAGACTGTTATGAAAATTGAAGCTT 387 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTT 993743 GTCTTATTTAAGGTATGAACTTTGA 452 GTCTTATTTAAGGTATGAACTTTGA * *** * * * * 993768 CTTAAAGGAAAATACAACAAAGAAAAGATTTCCATGCAAAAGAAAGTCATTAGTATCATTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * * * 993833 TAATGAAGAGAATGTGTTTACAGTGCCTAATCAGAAAATGAGTGCAGATCATTAGTAGATTCCAT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT * * * * * 993898 GTTTGTCTTATTGGAGGCATGAACTTAGACTTTACAAAAATTGGTTGGAAAAAAACCTTTCTTGC 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC * * * * ** * * * 993963 AAAATCAAAGCATGACTATCATGTATCCTAATGACTAGACTATGTTTATGATTCCTAAGCCTGAA 196 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA * * ** * 994028 GAGAATTGGGATTAGTATCTGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA 261 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA * * * * * ** 994093 AAAATGGTGGAAAGAAAAGCTTTTCCTGTGACACTAAAACATCAATGTCAGGTATCTTAAAAAAG 326 AAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG * * * ** * **** * 994158 GGTATGTGTTTTTGGTTCTCAATCTTGAAAAGAACGGAGACAATTACGAGAATATTTGCTTATCT 391 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTCT * * 994223 TATTTAAGGGATAAACTTTGA 456 TATTTAAGGTATGAACTTTGA * * * 994244 TTTTAAGTAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTGTCT 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC- * * * * * * * * * 994309 TTAA-GAGCACATTGTGTTTATAATGCCTAATCAAAAAATGAATGTAGATC-TCTACAAGAAACC 65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT-TACTAGAATCC * * * * * 994372 ATGTTTGTCTTATTCGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGAAAAAAGCTTTTCTT 129 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT * * * * 994437 GCCAAATCCCAA--ATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCAT 194 GCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT * * * * * 994500 GGAAAGAATGGGGATTAGTATGAGTATTCATATTTGTTTTATTTAAGAGGCAAACATTGATTCTA 258 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA * * * * * * 994565 TCAAAAGTGGAGTAAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAATGTTATGT-TCCCTATT 323 TCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTAT-CCTAAT * * * * * 994629 GAAGGGACTGTGTTTTTGGTTCCTAACCTTGAAAAGAATGGAGACCGTTATGATAATCGAAGCTT 387 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTT * * 994694 ATCTTATTTAAGGGATGAACTTTGA 452 GTCTTATTTAAGGTATGAACTTTGA * * * 994719 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCACTATCATTTATCA 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * 994784 TAATAAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCCT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT * * * 994849 ATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAATAGCCTTTCTTAC 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC * * * * * 994914 GAAACCAAAGCATCAATATGATGCATCCTAATGAGAAGACTATGTTTACGGTACCAAATCCTGAA 196 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA * * * * 994979 AAGAATAGGGATTAGTATGGGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCAATCA 261 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC- * * * * 995044 AAAAAT-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTATTAAA 325 AAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA * * * * * * 995108 GGGACTGTGTTTTTGGTTCCCAATTTTAAAAAGAATGGAGATTGTTATGATAATTGAAGCTTGTC 390 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTC 995173 TTATTTAAGGTATGAACTTTGA 455 TTATTTAAGGTATGAACTTTGA * * * * * * 995195 TTTAAAGGAAAATAGTGCAAATAAAAGATTTCCAAGTAAAAGGAAATCATCAATATCATTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * 995260 TAATGAGGAAAATGTGTTTTTAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATTCC- 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TCCA * * * * * 995324 TGTTTGTCTCATTTGAGGGATGAACTTAGATTTTAGAAAAATTGGTGGGAAAAAAGCCTTTTTTG 130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG * * * * * * 995389 CGAAACCAAAGCATCAATATGACGTATCCTAAAGAGAATACCATGTTTATGGTGCCTAATCTTGA 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * * 995454 AAAGAATGGGGATTAGTGTGGGTATTCAAGTTTGTCTTCTTTAAGAGACAAACTTTGATTCTATC 260 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC * * * * * 995519 AAAAATGGTGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTATTAAA 325 AAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA * * * * * * 995584 GGGATTGTG-TTTTAGTTCCCAATGTTGAAAAGAATAGAGACTGTTATGATAATCGAAGCTTGTT 390 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTC * 995648 TTTTTTAAGGTATGAACTTTGA 455 TTATTTAAGGTATGAACTTTGA * * * * * 995670 TTTAAAGGAATATAGGGTAAAGAAAAGATTTTCGTGCAAAA-AAAATCATCAACATCTTTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * 995734 T-ATAAGGAGAACGTGTTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTATTAGAATATC- 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT-CCA * * * 995797 TGTTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGG-AAACAGCCTTTCTTG 130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG * * * * 995861 TGAAACCAAAGCATCAATATGATGTATCCTAATGAAAAGACTATGTTTATGGTGCCAAATCCTGA 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * * 995926 AAAAAATGGGGATTAGTAT-AGGTATCCATATTTGTCTTTTTTAAGAGACAAACTTTGATTCTAT 260 AAAGAATGGGGATTAGTATGA-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT * * * * * 995990 TAGAAAAT-GTGGAAAGAAAAGCTTTTCTTGCGATACCAATGCATCAATGTCATGTA-CTCTATT 324 CA-AAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATC-CTAAT * * * * * 996053 GAAGGGACTGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTATGATAATTGAAGCTT 387 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTT * * 996118 GTCTTATTTAAGGTATCAACTTTTA 452 GTCTTATTTAAGGTATGAACTTTGA * * 996143 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATTC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * 996208 TAATTAGGAGAATGTGTTTTTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCCT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT * * * * * * 996273 ATTTTTCTCATTTGAGGCATGAACTTAGACTTTAGAAAAATTAGT-AGAAAAAAGCCTTTCTTGC 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC * * * * * 996337 GAAACCAAAGCATCAATATGACGTATCCTAATGAGAAGACCATGTTTATAGTGCCTAATCTTGAA 196 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA * * * 996402 AAGAATGGGGATTAGTGTGGGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA 261 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC- * * * * * 996467 AAAAAT-GTGGAAAGAAAAGCTTTTCTTGAGATACCAAAGCATCAATGTCATGTACCCTATTGAA 325 AAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA * * * * * 996531 GGGACTGTGTTTTTGGTTCCCAATGTTGAAAAGAACT-GAGATTGTTATGATAATTGAAGCTTGT 390 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTGTTATGAGAATCGAAGCTTGT 996595 CTTATTTAAGGTATGAACTTTGA 454 CTTATTTAAGGTATGAACTTTGA * * * * 996618 TTTAAAGGAAAATAGCGCGAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * * 996683 TAATGAGGAGAATGTGTTTTTAATGCCTAATCACAAAATGAGTGTAGATCATTAGTAGAATCTAT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT * * * * * 996748 GTTTGTCTCATTTGAGGCACAAACTTAGACTTTA-AAAAATTTGGTGGGTAAAATGCCTTTCCTA 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGTGGGAAAAAAGCCTTTCTTG * * * * * ** * 996812 CGAAACCAAAACATCAATATCATGTGTCCTAATGAAAAAACTATGTTTAGGGTGAGTAATCTTGA 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * * 996877 AAATAATGGAGATTAGTTTGTGTATTCATGTTT-TCCTT-TTTAAGAGACAAACTTTGATTCTAT 260 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCTAT * * * * 996940 CAAAAATGGTGGAAGGAAATGCATTTCCTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGA 324 CAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA * * * * * * * * 997005 AAGGAATGTGCTTTTGATTCCTAATCCTGAAAAGAATGAAAACTGTTATGAGAATCGATGCTTGT 389 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGT * 997070 CTTATTTAAGGTATGAACTTTTA 454 CTTATTTAAGGTATGAACTTTGA * * * ** * * 997093 TTTAAAGGAAAATAAGGCGAAGAAAAGATTGTCATGCAAAATTAAATCATTC-GTATCATTTGTC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA-TCAATATCATTTATC * * * * 997157 CTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAGTGAAGATCATTAGTAAAATCCA 65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA * * * * 997222 TGTTTATCTCATTTGTA-GTACGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGCCTTTCTT 130 TGTTTGTCTCATTTG-AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT * * * * * * 997286 GCGAAACCAAACCATCAGTATCGTGTGTCCTAATGAGAAGACTACGTTTATGGTGCCAAATCCTG 194 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG * * * 997351 AAAAGAATGGGGATTAGTTTGAGTTTTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT 259 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT ** * 997416 CAAAAATGGTGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATCAATGTCATGTATCCTAATAA 324 CAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA * * * ** 997481 AGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGATTGGA-AGCTATTACGAGAATCGATCCTT 389 AGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGA-CTGTTATGAGAATCGAAGCTT * 997544 GTCTTATTTAAGGGATGAACTTTGA 452 GTCTTATTTAAGGTATGAACTTTGA * * * * 997569 TTTGAAGGAAAATAGGGCAAAGAAAAGA-TTTCAATGTAAAAGAAAATCAACAATATCATTTATA 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATC * * * * 997633 CTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAACGAATGAAGATCATTAGTAGAATCCC 65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA * * * * * * 997698 TGTTTGTCTCATTTGAGGCATGAACTTGGACTTTACAAAAAATGCTAGGAAAAAAGCATTTCTTG 130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG * * * * * * 997763 TGAAACCAAAGCATCAATATGACGTATCCTAATGAGAAGACTACGTCTATGGTGCCTAATCTTGA 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * 997828 AAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATA 260 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC * * * * * * 997893 AAAAACGGTGGAAACAAATGCTATTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAA 325 AAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA ** * * * 997958 ATGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGCTACGAGAATCGAAGCTTGTC 390 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTC * 998023 TTATTTAAGGTATGAACGTTGA 455 TTATTTAAGGTATGAACTTTGA * * * * 998045 TTTAAGGGAAAATAGGGCAAAGAAAATATTTTCATGCTAAAGAAAATCATCAATATAATTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * 998110 TAATGAGGAGAATTTGTTTATAGTGCCTAATCAC-AAA-GAAAGTGTAGATCATTAGTAGAATCT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-AA-TGAAGATCATTACTAGAATCC * * * * 998173 ATGTTTATCTCATTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAAAATGCATTTCTT 129 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT * * * * * * * 998238 GCAAAACCAAACCATTAGTATTATGTATCCTAATGGGAAGACTATGTTTATGGTGCCTAATCTTG 194 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG ** * * * * 998303 AAAAGAATTAGGATTAGCATGAGTATTCATGTTTGT-TATATTCAAGAGATAAACTTTGATTTTA 259 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTA * * * * 998367 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA-CTAACCATCAATTTCATGTATCCTAATG 323 TCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATG * * * * * * 998431 AAAGGAATGTG-TTTTGGCTTCCCAATCTTCACAAGAATGGAGGCTATTATGAGAATCGATGCTT 388 AAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTT * 998495 GTCTTATTTAAGG-ATAAACTTTGA 452 GTCTTATTTAAGGTATGAACTTTGA * * * 998519 TTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATAAAT-AATATCATTTATC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT-CATCAATATCATTTATC * * * ** 998583 CTAATGAGGAGAATGTATTTAAAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGACCCCA 65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA * * * 998648 TGTTTGTCT-GTTTCGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTT 130 TGTTTGTCTCATTT-GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT * ** * * * * * * 998712 GCAAAACTGAAGCATCAATATGATGTATCATAATGGGAAGACTATATTTATAGTGCCTAATCGT- 194 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG * * 998776 AAAAAAAT-GGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTAT 259 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT ** * * * * * * 998840 CAAAAATGAAGGATAGAAAAGCTTTTCCTGTGACGCCAATGCATCAATGTCATGTATACTAATGT 324 CAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA * ** * * 998905 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATATAGACTATTATGAGAATTGAAGCTTGT 389 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGT 998970 CTTATTTAAGGTATGAACTTTGA 454 CTTATTTAAGGTATGAACTTTGA * * * * 998993 TTTAAAGGAAAATAGGGCAAAGAAACGATTTTTATGCAAAAGAAAATCATCAATATCGTTTACCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * ** 999058 TAATAAGGAGAATGTGTTTAAAGTGCTTAATCACAAAATGAATAAAGATAATTACTAGACCCCAT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT ** ** * * * 999123 AATTGTCTTTTTTAAGGCACAAACTTAGACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCTTGC 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC ** * * * 999188 GAAACTGAAGCATCAATATGATGTATCATAATGGGAAGACTATGTTTATGGTGCCTAATCCTGAA 196 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA ** * * ** * * * 999253 AAGAATATGGATTGGTATGACTATAAATATTTATCTTATTTAAGAGACAAACTTTGATTCTTTCA 261 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA * * * * * * * 999318 AAAAGGGTGGGAAAAAAAAGCTTTTCTTGCGACACCAATGCGTCAATGTCTTGTATCCTAATAAA 326 AAAATGGT-GGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA * * * * * * * * 999383 GGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATAGAGGCTTTTACGAGAATCGATGCTTGTC 390 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTC * * 999448 TTTTTTAAGGGATGAACTTTGA 455 TTATTTAAGGTATGAACTTTGA * * 999470 TTTTAAGGAAAATAGGGCAAA-AAAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTAT 1 TTTAAAGGAAAATAGGGCAAAGAAAAGAT-TTT-CATGCAAAAGAAAATCATCAATATCATTTAT * * * * * * 999534 CCTAATGATGAAAATGTGTTTATAGTGCCTAATCACAAACTAAATGAAGATCATTACAAGAAACC 64 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC * * * * * 999599 TTGTTTGCCTCATTTAAGGCATGAACTTAGACTTTACAAAATTTGGT-GGAAAAAATGCCTTTCT 129 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAA-GCCTTTCT * * * * ** * * * * 999663 TGTGAAACCAAAACATCAATGTCGTGCGTCCTAATGATAAGACTATGTTCAGGGTGCCTAATCTT 193 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT ** * * 999728 GAAAATCATGGGGATTAGTAT-ATGTATTCATGTTTGTCTTAGTTAAGAGAAAAACTTTGATTCT 258 GAAAAGAATGGGGATTAGTATGA-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT * * * * * * 999792 ATCAAAAACGATGGAAAGAAAAGCTTTTCTTGTGGCACCAAAGCATCAATGTCATATATCCTAAT 322 ATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAAT * * * * * * 999857 GAAGGGAATATG-TTTTGGTTTGCCAATCTTGAAAAGAATGGAAACTGTAACGAGAATCGATGCT 387 GAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCT * * * 999921 TTTCTTATTTAGGGGATGAACTTTGA 451 TGTCTTATTTAAGGTATGAACTTTGA * * * * * * 999947 TTTTATGAAAAATAGGGCAAAGAAATGA-TTTCTACGCAAAAAAAAATCATCAATATCATTTATC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATC * * * 1000011 TTAATGAGGAG-A-------AT-GTG-----TCACAAAATGAATGAAGTTCATTACGAGAATCCA 65 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA * * * * * ** * * 1000062 TGTCTGTCTTATTTGAGGTATGAACTTGGACTTTACAAAAATTGGTAAGAAAAAAGCCTTTTTTT 130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG * * * * * 1000127 CGAAACCAAAGCATCAGTATCATGTATCCTGATAAAAAGACTATGTATATGGTGCCTAATCCTGA 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * * 1000192 AAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAAAGACAAACTTTGATTCTATT 260 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC * ** * *** 1000257 AAAAATGGTCGAAAGAAAAGCTTTTTTTGCGACACCAAGGTGCCAATGTCATGTATCCTAATGAA 325 AAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA ** * * * * * * 1000322 GGGAAAATGTTTTTGGGTCCCAATCTTAAAAAGAATGGAGACTGCTATGAGAATCGATGCCTATC 390 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTC * * * 1000387 TTATTTAAAGAATGAATTTTGA 455 TTATTTAAGGTATGAACTTTGA * 1000409 TATT-AA-GAAAGATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCGATATCATTTAT 1 T-TTAAAGGAAA-ATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT * * 1000472 CCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCC 64 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC * ** * * * * 1000537 ATGTTAGTCTCATTTGAGGCACCG-A-TGTCCACATTACAAAAATTAGTGGGAAAAAATCATTTC 129 ATGTTTGTCTCATTTGAGGCA-CGAACT-TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC * * * * * * * * 1000600 TTCCAAAATCGAAGCGTCAATATCATGTATCATAATAAGAAGACTATGTTTATGGTGCCAAATCC 192 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC * * * * * 1000665 TAAAAAGAATAGGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTCATTCT 257 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT * * ** * * * 1000730 ATTAAAAATGGT-GTAAGAAAAGCTTTTCCTATGACACCAATGCATTAATGTTATGTATCCTAAT 322 ATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAAT * * * * * * * 1000794 GAAGGGAATGTGATTTTGGCTCCAAATCTTGAAAAGAATGGAAACTATTATGAGAATCAAAGTTT 387 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTT * * * 1000859 GTCTTATTTAAGTTGTAAACTTTGA 452 GTCTTATTTAAGGTATGAACTTTGA * * * * * * * * 1000884 TTTAAAGGAAAAAAAAAGACGAAGAAAAGATTTTCATGTAAAAAAAAATCATCAATATCGTTAAT 1 TTTAAAGG--AAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT * * * 1000949 CCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATAATTTCTAGAATCC 64 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC * * * * * ** * 1001014 ATGTTTGTGTCTTTTGAGCCATGAACTTAGAGTTTACAAAAATTGGAAGGAAAAAAGCCTATCTT 129 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT * * * * 1001079 GCGAAACCAAAGCATTAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTA 194 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG * * 1001144 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGTGACAAACTTTGATTCTAT 259 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT * * * * 1001209 C-AAAATCGGTGGAAAGAAAAGCTTTTCTTGC-ATCACTAAAGCATTAATGTCATGTTTCCT-AT 324 CAAAAAT-GGTGGAAAGAAAAGCTTTTCCTGCGA-CACCAAAGCATCAATGTCATGTATCCTAAT * ** * * * 1001271 ----TG-ATG-G-----GACTCCCAATCTTAAAAAGAATGGAGACTGTTATTAGAATCGAAACTT 387 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTT * * 1001325 GTCTCATTTATGGTATGAACTTTGA 452 GTCTTATTTAAGGTATGAACTTTGA * * * 1001350 TTTAAAAGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAA-AAAATCATCAGTATCATTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * 1001414 TAATAAGGAGAATGTGTTTATAGTGCCTAATCTA-GAAATAAATGCAGATCATTAGTAGAATCCA 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCA * * * * * 1001478 TGTTTGTCTTATTTAAGGTAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG 130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG ** * * * 1001543 CGAGTCCAAAGAACCAATATCATGTATCCAAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * * * * * * * 1001608 AAAGAATAGGGATAAATAGGACTATTCAAGTTTGTCCTATATAAGAGACAAATTTTGATTCTATC 260 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC * * * 1001673 AAAAATGGTGGAAAGAAAAGCTTTTCCTACGGCACCAAAGCATCAATGTCATGTATCTTAATGAA 325 AAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA ** * * * * 1001738 AAGAATGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGAATGTTATGAGAATCGATA-CTTGG 390 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA-AGCTTGT 1001802 CTTATTTAAGGTATGAACTTTGA 454 CTTATTTAAGGTATGAACTTTGA * * * * * 1001825 TTTAAAGGACAATAGGGCAAAGAAAAGATTTTGATGCAAAATAAAATCATCAGTATCATTTGTCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * * 1001890 TAATGAGGAAAATATGTTTATAGTGCCTAATCACAAAATGAGTGAAGATCGTTAGTAAAATCCAT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT * ** * * * 1001955 ATTTGTCTCATTTTTGGCACGAACTTAGACTTTACAAAAATTCGCT-GG-AAAATGCCTTTCTTT 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGTGGGAAAAAAGCCTTTCTTG * * * * * * 1002018 CGAAACCAAACCATCAATATCGTCTATCTTAATGAGAAGACTATGTTTATAGTGCCAAATCCT-A 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * * 1002082 AAATGAATGGGGAATTAGTATGAGTATTCATGTTTATCTTATTTGAGAGATAAAGTTTGATTCTA 260 AAA-GAATGGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA * ** * * 1002147 TCAAAAACGGTGGAAAGAAAAGCTTTTCCTATGGCACCAAAGCATCAATGTCATGTATCCAAATG 323 TCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATG * * * 1002212 AAGGGAATATG-TTTTGAGTTCCCAACCTTGAAAAGAATGGAGACTGTTACGAGAATCGAAGCTT 388 AAGGGAATGTGTTTTTG-GTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTT * * 1002276 GTC-TA--T--GGTATAAACTTTCA 452 GTCTTATTTAAGGTATGAACTTTGA * * 1002296 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATTATTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * 1002361 TAATGAGAAGAATGTGTTTACAGTGCCTAAT--CAGAA--AATG-AG--------T-G----CA- 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT * * * * * * * 1002407 G---G--TCATTTGTGGTACGAACTTAGACTTTTCAAAAATTAGAT-AGAAAAAAACCTTTCTTA 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGTGGGAAAAAAGCCTTTCTTG * * * * 1002466 AGAAACCAAAGCATTAATATGATGT-TACCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTG 195 CGAAACCAAAGCATCAATATCATGTAT-CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG * * * 1002530 AAAACAATGGGGATTAGTATGATTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT 259 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT * * * 1002595 TAAAAATGGTGGAAAGAAAAGCTTTT-CTCGCGACACCAATGCATCAATGTCAAGTA-CCTTAAT 324 CAAAAATGGTGGAAAGAAAAGCTTTTCCT-GCGACACCAAAGCATCAATGTCATGTATCC-TAAT * * * * ** * 1002658 GAAGGAAATGTG-TTTTGCCTTCCTAATCTTGAAAAGAGA-GGAGGCTGTTACCAGAAT-TAATG 387 GAAGGGAATGTGTTTTTG-GTTCCCAATCTTGAAAAGA-ATGGAGACTGTTATGAGAATCGAA-G * * * 1002720 CTTGTCTTATTTAAGGGATAAACTTCGA 449 CTTGTCTTATTTAAGGTATGAACTTTGA * * * * * * * 1002748 TTTTAAGCAAAATAGGGCAAAGAAAATATTTTCATCCAAAAGAAAATCACCAATATTATTTATCT 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * * * * 1002813 TAATAAGGAGAATGTATTTATAGTTCTTAATCCCAAAATGAATGAAGATCATTACTAGAA-CTCA 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC-CA * * * * * 1002877 TGCTTGTCTCTTTTGAGGCATGAGCTTAAACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG 130 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG * * 1002942 CGAAACCCAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCGTAATCCTGA 195 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA * * * 1003007 AAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC 260 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC * * * 1003072 AATAATCGTGGAAAGAAAAGCTTTT-CTCGTGACACCAAAGCATCAATGTCATGTATCCTAATGA 325 AAAAATGGTGGAAAGAAAAGCTTTTCCT-GCGACACCAAAGCATCAATGTCATGTATCCTAATGA * * 1003136 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCT 389 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGT * ** * 1003201 CTTATTTAAAAG-ATGATTTTTTA 454 CTTATTT-AAGGTATGAACTTTGA * * * * ** 1003224 TTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATACAATAGAAAATCATCAATATGTTTTATCC 1 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC * * 1003289 TAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAT 66 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT * * * * * 1003354 GTTTGTCTCATTTCAGGCACAAACTTAAACTTTACAAAAATTAGTGAGAAAAA 131 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA 1003407 TTATAGCTCC Statistics Matches: 8181, Mismatches: 1289, Indels: 338 0.83 0.13 0.03 Matches are distributed among these distances: 446 6 0.00 447 186 0.02 448 73 0.01 449 5 0.00 450 1 0.00 452 94 0.01 453 2 0.00 454 4 0.00 456 4 0.00 457 2 0.00 458 1 0.00 461 3 0.00 462 356 0.04 463 304 0.04 464 35 0.00 465 1 0.00 466 69 0.01 467 6 0.00 468 3 0.00 469 7 0.00 470 5 0.00 471 103 0.01 472 267 0.03 473 303 0.04 474 539 0.07 475 1820 0.22 476 2965 0.36 477 735 0.09 478 282 0.03 ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32 Consensus pattern (476 bp): TTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA AAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTCT TATTTAAGGTATGAACTTTGA Found at i:995595 original size:159 final size:156 Alignment explanation

Indices: 993442--1001778 Score: 1338 Period size: 159 Copynumber: 52.8 Consensus size: 156 993432 TTGAGGTACG * * ** * * 993442 AACTTAGACTTTACAAAAAT--TGGTAAAGAAAAAAGCCTTTCTTAAGAAACCAGAGCGTCAATA 1 AACTTTGA-TTTACAAAAATGGTGG-AAAG--AAAAGCTTTTCTTGCGAAACCAAAGCATCAATA * * * * * * * 993505 TCGTATATCCTATTGAGAA-GG-CTATGTTTGTGGTGCTTAATCCTAAAAAGAATAGG-GATTAG 62 TCATGTATCCTATT-A-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTAG * * * 993567 TATGACTATTTATGTTTGTCTTATTTAAGAGACA 124 TATG-GTATTCAAGTTTGTCTTATTTAAGAGACA ** * * * ** ** * 993601 AACTTTGATTCTATCAAAAATTATGGAAAGAAAAGCTTTTCCTGTGACATTATTGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * 993666 ATGTATCATATTGATGAGACTGTGTTT-TCGGTTCCTATTCTTGAAAAGAATGGAGACT-GTTAT 64 ATGTATCCTATTAAAGGGACTGTGTTTAT-GGTGCCTAATCTTGAAAAGAATGGAGATTAG-TAT ** * * ** 993729 GAAAATTGAAGCTTGTCTTATTTAAG-GTATG 127 G-GTATTCAAGTTTGTCTTATTTAAGAG-ACA * * ***** * * * ** * * 993760 AACTTTGACTTAAAGGAAAATACAACAAAGAAAAGATTTCCATGC-AAAAGAAAGTCATTAGTAT 1 AACTTTGATTTACA--AAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATAT * * * * * ** * * * * * 993824 CATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATC-AGAAAATGAGTGCAGATCATTAG 63 CATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAGTA- * * * * 993888 TAG-ATTCCATGTTTGTCTTA-TT-GGAGGCA 126 TGGTATT-CAAGTTTGTCTTATTTAAGAGACA * * * * * * 993917 TGAACTTAGACTTTACAAAAATTGGTTGGAAA-AAAA-CCTTTCTTGCAAAATCAAAGCATGACT 1 --AACTTTGA-TTTACAAAAA-TGG-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT * * *** * * * * * * 993980 ATCATGTATCCTAATGACTAGACTATGTTTATGATTCCTAAGCCTGAAGAGAATTGG-GATTAGT 61 ATCATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAA-TGGAGATTAGT * * 994044 ATCTGTATTCATGTTTGTCTTATTTAAGAGACA 125 AT-GGTATTCAAGTTTGTCTTATTTAAGAGACA * * * * * * 994077 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGTGACACTAAAACATCAATGTC 1 AACTTTGA-TTTA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * ** * * * ** * * 994142 AGGTATCTTAAAAAAGGGTA-TGTGTTTTTGGT-TCTCAATCTTGAAAAGAACGGAGACAATTAC 64 ATGTATCCTATTAAAGGG-ACTGTGTTTATGGTGCCT-AATCTTGAAAAGAATGGAGATTAGTAT * * * * * 994205 GAGAATATT--TGCTTATCTTATTTAAGGGATA 127 G-G--TATTCAAGTTTGTCTTATTTAAGAGACA * * * * ** * 994236 AACTTTGATTTTA-AGTAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA 1 AACTTTGA-TTTACA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA * * * ** ** * 994299 TCATTTGT-CT-TT-AAGAGCACATTGTGTTTATAATGCCTAATC-AAAAAATGAATGTAGATCT 62 TCATGTATCCTATTAAAG-GGAC--TGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGAT-T * ** * ** * ** 994360 -CTACAAGAAACCATGTTTGTCTTATTCGAG-GCACA 122 AGTA-TGGTATTCAAGTTTGTCTTATTTAAGAG-ACA * * * 994395 AACTTAGACTTTACAAAAATTGGTAGG-AA-AAAAGCTTTTCTTGCCAAATCCCAA--ATCAATA 1 AACTTTGA-TTTACAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCGAAA-CCAAAGCATCAATA * * * * * * 994456 TGATGTATCCTAATGAGAA--GACTATGTTTATGGTGCCTAATCATGGAAAGAATGGGGATTAGT 62 TCATGTATCCT-ATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGT * * 994519 ATGAGTATTCATA-TTTGTTTTATTTAAGAGGCA 125 ATG-GTATTCA-AGTTTGTCTTATTTAAGAGACA * * * * * * 994552 AACATTGATTCTATCAAAAGTGGAGTAAAGAAAAGCTTTTCCTGC-AACACCAAAGCATCAATGT 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATAT * * * * * ** 994616 TATGT-TCCCTATTGAAGGGACTGTGTTTTTGGTTCCTAACCTTGAAAAGAATGGAGA-CCGTTA 63 CATGTAT-CCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAG-TA * * * * * ** 994679 TGATAATCGAAGCTTATCTTATTTAAGGGATG 126 TGGTATTC-AAGTTTGTCTTATTTAAGAGACA * * * * * * ** * * 994711 AACTTTGATTTAAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCACTAT 1 AACTTTGATTTACA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * ** * * * 994775 CATTTATCATAAT-AAGGAGAATGTATTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTA 63 CATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAGTA * * * * * * * 994838 CTAGAATCCCTA-TTTGTCTCATTTGAG-GCACG 126 -TGGTAT-TCAAGTTTGTCTTATTTAAGAG-ACA * * * * * * 994870 AACTTAGACTTTACAAAAATTGGTGGGAA-AATAGCCTTTCTTACGAAACCAAAGCATCAATATG 1 AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * 994934 ATGCATCCTAATGAGAA--GACTATGTTTACGGTACCAAATCCTGAAAAGAATAGG-GATTAGTA 64 ATGTATCCT-ATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTAGTA 994996 TGGGTATTCATA-TTTGTCTTATTTAAGAGACA 126 T-GGTATTCA-AGTTTGTCTTATTTAAGAGACA * * * 995028 AACTTTGATTCAATCAAAAAAT-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT 1 AACTTTGATT-TA-C-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * 995092 CATGTACCCTATTAAAGGGACTGTGTTTTTGGTTCCCAATTTTAAAAAGAATGGAGATT-GTTAT 63 CATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAG-TAT * * * ** 995156 GATAATTGAAGCTTGTCTTATTTAAG-GTATG 127 GGT-ATTCAAGTTTGTCTTATTTAAGAG-ACA * * * * * * ** ** ** * 995187 AACTTTGATTTAAAGGAAAATAGTGCAAATAAAAGATTTCCAAGTAAAAGGAAATCATCAATATC 1 AACTTTGATTTACA--AAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * ** * * * * 995252 ATTTATCCTAAT-GAGGAAAATGTGTTTTTAGTGCCTAATC-ACAAAATAAATGAAGATCATTAC 64 ATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAGTA- * * ** * * * ** 995315 TAGAATTCCTGTTTGTCTCATTTGAGGGATG 126 TGGTATTCAAGTTTGTCTTATTTAAGAGACA * * * 995346 AACTTAGATTTTAGAAAAATTGGTGGGAA-AAAAGCCTTTT-TTGCGAAACCAAAGCATCAATAT 1 AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAG-CTTTTCTTGCGAAACCAAAGCATCAATAT * * ** ** * * 995409 GACGTATCCTA--AAGAGAATACCATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTG 63 CATGTATCCTATTAA-AG-GGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTA * 995472 TGGGTATTCAAGTTTGTCTTCTTTAAGAGACA 126 T-GGTATTCAAGTTTGTCTTATTTAAGAGACA * * * * 995504 AACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * 995569 ATGTATCCTATTAAAGGGATTGTGTTT-TAGTTCCCAATGTTGAAAAGAATAGAGACT-GTTATG 64 ATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAG-TATG * * * * * ** 995632 ATAATCGAAGCTTGTTTTTTTTAAG-GTATG 128 GTATTC-AAGTTTGTCTTATTTAAGAG-ACA * * * ** * * 995662 AACTTTGATTTA-AAGGAATATAGG-GTAAAGAAAAGATTTTCGTGC-AAAAAAAATCATCAACA 1 AACTTTGATTTACAA--AA-AT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA * * * * * 995724 TCTTTTATCCTA-T-AAGGAGAAC-GTGTTTATAGTGCCTAATC--GCAAAATGAATGAAGATCA 62 TCATGTATCCTATTAAAGG-G-ACTGTGTTTATGGTGCCTAATCTTG-AAAA-GAATGGAGATTA * * * * * 995784 TTATTAGAATATC-TGTTTGTCTTATTTGAG-GCACA 123 GTA-TGGTAT-TCAAGTTTGTCTTATTTAAGAG-ACA * * * 995819 AACTTAGACTTTACAAAAATTGGTGG---GAAACAGCCTTTCTTGTGAAACCAAAGCATCAATAT 1 AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAA-AGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * * * 995881 GATGTATCCTAATGAAA-AGACTATGTTTATGGTGCCAAATCCTGAAAAAAATGGGGATTAGTAT 63 CATGTATCCT-ATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTAT * * 995945 AGGTATCCATA-TTTGTCTTTTTTAAGAGACA 127 -GGTATTCA-AGTTTGTCTTATTTAAGAGACA * * * * 995976 AACTTTGATTCTATTAGAAAAT-GTGGAAAGAAAAGCTTTTCTTGCGATACCAATGCATCAATGT 1 AACTTTGATT-TA-CA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * * 996040 CATGTA-CTCTATTGAAGGGACTGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTATTAT 63 CATGTATC-CTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTAT * * * 996104 GATAATTGAAGCTTGTCTTATTTAAG-GTATC- 127 GGT-ATTCAAGTTTGTCTTATTTAAGAG-A-CA * * * * ** * ** * 996135 AACTTTTATTTAAAGGAAAATAGG-GCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATAT 1 AACTTTGATTTACA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * ** * * * 996199 CATTTATTCTAATT--AGGAGAATGTGTTTTTAGTGCCTAATC-ACAAAATGAATGAAGATCATT 63 CATGTATCCT-ATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAGT *** * * * * * 996261 ACTAAAATCCCTA-TTTTTCTCATTT--GAGGCA 125 A-TGGTAT-TCAAGTTTGTCTTATTTAAGAGACA * * * * * 996292 TGAACTTAGACTTTAGAAAAATTAGTAG-AA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATA 1 --AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA * * * ** * * 996355 TGACGTATCCTAATGAGAA--GACCATGTTTATAGTGCCTAATCTTGAAAAGAATGGGGATTAGT 62 TCATGTATCCT-ATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGT * 996418 GTGGGTATTCAAGTTTGTCTTATTTAAGAGACA 125 AT-GGTATTCAAGTTTGTCTTATTTAAGAGACA * * * 996451 AACTTTGATTCTATCAAAAAAT-GTGGAAAGAAAAGCTTTTCTTGAGATACCAAAGCATCAATGT 1 AACTTTGATT-TA-C-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * 996515 CATGTACCCTATTGAAGGGACTGTGTTTTTGGTTCCCAATGTTGAAAAGAACT-GAGATT-GTTA 63 CATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAA-TGGAGATTAG-TA * * * ** 996578 TGATAATTGAAGCTTGTCTTATTTAAG-GTATG 126 TGGT-ATTCAAGTTTGTCTTATTTAAGAG-ACA * * * * * ** * ** * 996610 AACTTTGATTTAAAGGAAAATAGCGCG-AAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATAT 1 AACTTTGATTTACA--AAAATGGTG-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * ** ** * * * * 996674 CATTTATCCTAAT-GAGGAGAATGTGTTTTTAATGCCTAATC-ACAAAATGAGTGTAGATCATTA 63 CATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAGTA * * * * * 996737 GTAG-AATCTATGTTTGTCTCATTTGAG-GCACA 126 -TGGTATTC-AAGTTTGTCTTATTTAAGAG-ACA * ** * * * * * 996769 AACTTAGACTTTA-AAAAATTTGGTGGGTA-AAATGCCTTTCCTACGAAACCAAAACATCAATAT 1 AACTTTGA-TTTACAAAAA--TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * ** * * ** * * 996832 CATGTGTCCTAATGAAA-AAACTATGTTTAGGGTGAGTAATCTTGAAAATAATGGAGATTAGTTT 63 CATGTATCCT-ATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTAT * 996896 GTGTATTCATGTTT-TCCTT-TTTAAGAGACA 127 G-GTATTCAAGTTTGT-CTTATTTAAGAGACA * * * * * * 996926 AACTTTGATTCTATCAAAAATGGTGGAAGGAAATGCATTTCCTGCGACACCAAAGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * * * 996991 TTGTATCCTAATGAAA-GGAATGTGCTTT-TGATTCCTAATCCTGAAAAGAATGAAAACT-GTTA 64 ATGTATCCT-ATTAAAGGGACTGTG-TTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAG-TA * * * ** 997053 TGAG-AATCGATGCTTGTCTTATTTAAG-GTATG 126 TG-GTATTC-AAGTTTGTCTTATTTAAGAG-ACA * * * * * * * ** * * 997085 AACTTTTATTTAAAGGAAAATAAGG-CG-AAGAAAAGATTGTCATGCAAAATTAAATCATTC-GT 1 AACTTTGATTTACA--AAAAT--GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA-TCAAT * * * * * * ** * * * * 997147 ATCATTTGTCCTAAT-GAGGAGAATGTGTTTATTGTGCCTAATC-ACAAAATGAGTGAAGATCAT 61 ATCATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAG *** * * * * * 997210 TAGTAAAATCCATGTTTATCTCATTT--GTAGTACG 124 TA-TGGTATTCAAGTTTGTCTTATTTAAG-AG-ACA * * * * * * * 997244 AACTTAGACTTTGCAAAAATTGGTGGGAA-AAATGCCTTTCTTGCGAAACCAAACCATCAGTATC 1 AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * ** * * * * 997308 GTGTGTCCTAATGAGAA--GACTACGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTTT 64 ATGTATCCT-ATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTAT * * * 997371 GAGTTTTCATGTTTATCTTATTTAAGAGACA 127 G-GTATTCAAGTTTGTCTTATTTAAGAGACA * ** * * 997402 AACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * * 997467 ATGTATCCTAATAAAGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGATTGGA-AGCTATTAC 64 ATGTATCCTATTAAAGGGACTGTGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGA-TTAGTAT * * * ** 997530 GAG-AATCGA-TCCTTGTCTTATTTAAGGGATG 127 G-GTATTCAAGT--TTGTCTTATTTAAGAGACA * * * ** ** * * 997561 AACTTTGATTTGA-AGGAAAATAGG-GCAAAGAAAAG-ATTTCAATGTAAAAGAAAATCAACAAT 1 AACTTTGATTT-ACA--AAAAT-GGTGGAAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAAT * * * * * * * ** * * * 997623 ATCATTTATACTAAT-GAGGAGAATGTATTTATAGTGCCTAATC-ACAAAACGAATGAAGATCAT 61 ATCATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAG * * * ** * * 997686 TAGTAGAATCCCTGTTTGTCTCATTT--GAGGCA 124 TA-TGGTATTCAAGTTTGTCTTATTTAAGAGACA * * * * 997718 TGAACTTGGACTTTACAAAAAATGCTAGG-AA-AAAAGCATTTCTTGTGAAACCAAAGCATCAAT 1 --AACTTTGA-TTTAC-AAAAATGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT * * * ** * * 997781 ATGACGTATCCTAATGAGAA--GACTACGTCTATGGTGCCTAATCTTGAAAAAAATAGG-GATTA 61 ATCATGTATCCT-ATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTA * 997843 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACA 123 GTATG-GTATTCAAGTTTGTCTTATTTAAGAGACA * * * * * * * 997878 AACTTTGATTCTATAAAAAACGGTGGAAACAAATGCTATTCTTGCGACACCAAAGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC ** * * * * * * * * 997943 ATGTATCCTAACGAAA-TGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACT-GCTAC 64 ATGTATCCT-ATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAG-TAT * * ** 998006 GAG-AATCGAAGCTTGTCTTATTTAAG-GTATG 127 G-GTATTC-AAGTTTGTCTTATTTAAGAG-ACA * * ** * * ** * 998037 AACGTTGATTTA-AGGGAAAATAGG-GCAAAGAAAATATTTTCATGCTAAAGAAAATCATCAATA 1 AACTTTGATTTACA---AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA * * * * * * * * * 998100 TAATTTATCCTAAT-GAGGAGAATTTGTTTATAGTGCCTAATC---ACAAAGAAAGTGTAGATCA 62 TCATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGA-AAAG-AA-TGGAGATTA * * * * * * * * 998161 TTAGTAG-AATCTATGTTTATCTCATTTGAG-GCACG 123 GTA-TGGTATTC-AAGTTTGTCTTATTTAAGAG-ACA * * * * * * * * * * 998196 GACTTAGACTTTACAAAAATTGGTGGGAA-AAATGCATTTCTTGCAAAACCAAACCATTAGTATT 1 AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC ** * * * 998260 ATGTATCCTA--ATGGGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-TAGGATTAGCA 64 ATGTATCCTATTAAAGG--GACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA-GATTAGTA * * * 998322 TGAGTATTCATGTTTGT-TATATTCAAGAGATA 126 TG-GTATTCAAGTTTGTCT-TATTTAAGAGACA * * * * 998354 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA-CTAACCATCAATTTC 1 AACTTTGA-TTTA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * ** * 998418 ATGTATCCTAATGAAA-GGAATGTGTTT-TGGCTTCCCAATCTTCACAAGAATGGAGGCTATTAT 64 ATGTATCCT-ATTAAAGGGACTGTGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTAGTAT * * * * 998481 GAG-AATCGATGCTTGTCTTATTTAAG-GATA 127 G-GTATTC-AAGTTTGTCTTATTTAAGAGACA * * * * * ** ** 998511 AACTTTGATTTTAAGAAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATAAAT-AATA 1 AACTTTGA-TTT-ACAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAA-GCATCAATA * * * * * ** * ** * * * 998574 TCATTTATCCTAAT-GAGGAGAATGTATTTAAAGTGCTTAATC-ACAAAATGAATGAAGATCATT 62 TCATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAGT * ** * * * * 998637 ACTAG-ACCCCATGTTTGTC-TGTTT-CGAGGCA 125 A-TGGTA-TTCAAGTTTGTCTTATTTAAGAGACA * * * ** 998668 TGAACTTAGACTTTACAAAAATTGGT-GAGAA-AAAAGCCTTTCTTGCAAAACTGAAGCATCAAT 1 --AACTTTGA-TTTACAAAAA-TGGTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT * * * * * * * 998731 ATGATGTAT-C-A-TAATGGGAAGACTATATTTATAGTGCCTAATCGT-AAAAAAATGG-GATTA 61 ATCATGTATCCTATTAA-AGG--GACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTA 998791 GTATGAGTATTCATA-TTTGTCTTATTTAAGAGACA 123 GTATG-GTATTCA-AGTTTGTCTTATTTAAGAGACA ** * * * ** * * 998826 AACTTTGATTCTATCAAAAATGAAGGATAGAAAAGCTTTTCCTGTGACGCCAATGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * ** * * * * * ** * * 998891 ATGTATACTAATGTAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATATAGACTATTATGA 64 ATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTATG- * * * ** 998956 GAATTGAAGCTTGTCTTATTTAAG-GTATG 128 GTATTCAAGTTTGTCTTATTTAAGAG-ACA * * * * * ** * 998985 AACTTTGATTTAAAGGAAAATAGG-GCAAAGAAACGATTTT-TATGCAAAAGAAAATCATCAATA 1 AACTTTGATTTACA--AAAAT-GGTGGAAAGAAAAGCTTTTCT-TGCGAAACCAAAGCATCAATA * * * * * ** * ** ** * * 999048 TCGTTTACCCTAAT-AAGGAGAATGTGTTTAAAGTGCTTAATC-ACAAAATGAATAAAGATAATT 62 TCATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTAGT * ** * * 999111 ACTAG-ACCCCATA-ATTGTCTTTTTTAAG-GCACA 125 A-TGGTA-TTCA-AGTTTGTCTTATTTAAGAG-ACA * * * * ** * 999144 AACTTAGACTTTATAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACTGAAGCATCAATATG 1 AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * 999208 ATGTAT-C-A-TAATGGGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATATG-GATTGGT 64 ATGTATCCTATTAA-AGG--GACTGTGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTAGT * * * * 999269 ATGACTA-TAAATATTTATCTTATTTAAGAGACA 125 ATG-GTATTCAA-GTTTGTCTTATTTAAGAGACA * * * * * * * 999302 AACTTTGATTCTTTCAAAAAGGGTGGGAAAAAAAAGCTTTTCTTGCGACACCAATGCGTCAATGT 1 AACTTTGA-T-TTACAAAAATGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * * * * * 999367 CTTGTATCCTAATAAAGGGAATGTGTTT-TCGCTTCCCAATCTTAAAAAGAATAGAGGCTT-TTA 63 CATGTATCCTATTAAAGGGACTGTGTTTAT-GGTGCCTAATCTTGAAAAGAATGGA-GATTAGTA * * * * * * ** 999430 CGAG-AATCGATGCTTGTCTTTTTTAAGGGATG 126 TG-GTATTC-AAGTTTGTCTTATTTAAGAGACA * ** * * ** * 999462 AACTTTGATTTTA-AGGAAAATAGG-GCAAA-AAAAAATATTTCCATGCAAAAGAAAATCATCAA 1 AACTTTGA-TTTACA--AAAAT-GGTGGAAAGAAAAGCT-TTT-CTTGCGAAACCAAAGCATCAA * * * * ** * * ** * * 999524 TATCATTTATCCTAATGATGAAAATGTGTTTATAGTGCCTAATC-ACAAACTA-AATGAAGATCA 60 TATCATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAA--AGAATGGAGATTA * ** * ** ** * * 999587 TTACAAGAAACCTTGTTTGCCTCATTTAAG-G-CA 123 GTA-TGGTATTCAAGTTTGTCTTATTTAAGAGACA * * * * * * * 999620 TGAACTTAGACTTTACAAAATTTGGTGGAAA-AAATGCCTTTCTTGTGAAACCAAAACATCAATG 1 --AACTTTGA-TTTACAAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA * ** * * * * ** * 999684 TCGTGCGTCCTAATGATAA--GACTATGTTCAGGGTGCCTAATCTTGAAAATCATGGGGATTAGT 62 TCATGTATCCT-ATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGT * * * * 999747 ATATGTATTCATGTTTGTCTTAGTTAAGAGAAA 125 AT-GGTATTCAAGTTTGTCTTATTTAAGAGACA * * * ** * 999780 AACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGTGGCACCAAAGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * 999845 ATATATCCTAATGAAGGGAATATGTTT-TGGTTTGCC-AATCTTGAAAAGAATGGAAACT-GTAA 64 ATGTATCCTATTAAAGGGACTGTGTTTATGG--TGCCTAATCTTGAAAAGAATGGAGATTAGT-A * * * * * ** 999907 CGAG-AATCGATGCTTT-TCTTATTTAGGGGATG 126 TG-GTATTC-AAG-TTTGTCTTATTTAAGAGACA * * * * * * ** * 999939 AACTTTGATTTTATGAAAAATAGG-GCAAAGAAATG-ATTTCTACGCAAAAAAAAATCATCAATA 1 AACTTTGA-TTTA-CAAAAAT-GGTGGAAAGAAAAGCTTTTCT-TGCGAAACCAAAGCATCAATA * * * * * * 1000002 TCATTTAT-C--TTAATGAGGA----G--AAT-GTG--TCA-C---AAAATGAATGAAG-TTCAT 62 TCATGTATCCTATTAAAG-GGACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATT-AG * * * * * * ** 1000050 TACGAGAATCCATGTCTGTCTTATTTGAG-GTATG 124 TATG-GTATTCAAGTTTGTCTTATTTAAGAG-ACA * * * * 1000084 AACTTGGACTTTACAAAAAT--TGGTAAGAAAAAAGCCTTTT-TTTCGAAACCAAAGCATCAGTA 1 AACTTTGA-TTTACAAAAATGGTGG-AA-AGAAAAG-CTTTTCTTGCGAAACCAAAGCATCAATA ** * * * 1000146 TCATGTATCCTGA-TAAAAAGACTATGTATATGGTGCCTAATCCTGAAAAGAATAGG-GATTAGT 62 TCATGTATCCT-ATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTAGT * * * 1000209 ATGAGTATTCATGTTTGTCTTTTTTAAAAGACA 125 ATG-GTATTCAAGTTTGTCTTATTTAAGAGACA * * * * * *** * 1000242 AACTTTGATTCTATTAAAAATGGTCGAAAGAAAAGCTTTTTTTGCGACACCAAGGTGCCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * *** * * * * 1000307 ATGTATCCTAATGAAGGGAAAATGTTTTTGG-GTCCCAATCTTAAAAAGAATGGAGACT-GCTAT 64 ATGTATCCTATTAAAGGGACTGTGTTTATGGTG-CCTAATCTTGAAAAGAATGGAGATTAG-TAT * * ** * 1000370 GAG-AATCGATGCCTATCTTATTTAA-AGA-A 127 G-GTATTC-AAGTTTGTCTTATTTAAGAGACA * * * * * ** * * 1000399 TGAATTTTGATATTA-AGAAAGATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCGA 1 --AACTTTGAT-TTACA-AAA-AT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA * * * * ** * * * 1000462 TATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAAATCA 60 TATCATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTA * * * * * * * * * 1000525 TTACTAGAATCCATGTTAGTCTCATTTGAG-GCACC 123 GTA-TGGTATTCAAGTTTGTCTTATTTAAGAG-ACA * ** * * * * * * * * * * 1000560 GA-TGTCCACATTACAAAAATTAGTGGGAA-AAAATCATTTCTTCCAAAATCGAAGCGTCAATAT 1 AACT-TTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * * 1000623 CATGTATCATAAT-AAGAAGACTATGTTTATGGTGCCAAATCCTAAAAAGAATAGG-GATTAGTA 63 CATGTATCCTATTAAAG-GGACTGTGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTAGTA * 1000686 TGACTATTCATA-TTTGTCTTATTTAAGAGACA 126 TG-GTATTCA-AGTTTGTCTTATTTAAGAGACA * * * * ** * * * * * 1000718 AACTTTCATTCTATTAAAAATGGT-GTAAGAAAAGCTTTTCCTATGACACCAATGCATTAATGTT 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * 1000782 ATGTATCCTAATGAAGGGAATGTGATTT-TGGCT-CCAAATCTTGAAAAGAATGGAAACTATTAT 64 ATGTATCCTATTAAAGGGACTGTG-TTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTAGTAT * * * 1000845 GAG-AATCAAAGTTTGTCTTATTTAAGTTG-TA 127 G-GTATTC-AAGTTTGTCTTATTTAAG-AGACA * ***** * * ** ** * 1000876 AACTTTGATTTAAAGGAAAAAAAAAGACGAAGAAAAGATTTTCATGTAAAAAAAAATCATCAATA 1 AACTTTGATTTACA--AAAATGGTGGA--AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA * * * * ** * * 1000941 TCGT-TAATCCTATT-GAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATAAT 62 TCATGT-ATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTA- * * * * * * * * 1001003 TTCTAGAATCCATGTTTGTGTCT-TTT--GAGCCA 123 GTATGGTATTCAAGTTTGTCT-TATTTAAGAGACA * * * * * 1001035 TGAACTTAGAGTTTACAAAAAT--TGGAAGGAAAAAAGCCTATCTTGCGAAACCAAAGCATTAAT 1 --AACTTTGA-TTTACAAAAATGGTGGAA--AGAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT * * ** * * * 1001098 ATGATGTATCCTAATGAGAA--GACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG 61 ATCATGTATCCT-ATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAG * * * 1001161 TATGAGTATTCATGTTTGTCATATTTAAGTGACA 124 TATG-GTATTCAAGTTTGTCTTATTTAAGAGACA * * * * 1001195 AACTTTGATTCTATC-AAAATCGGTGGAAAGAAAAGCTTTTCTTGC-ATCACTAAAGCATTAATG 1 AACTTTGATT-TA-CAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGA-AACCAAAGCATCAATA * * * * * * 1001258 TCATGTTTCCTATT-----GA-TG-G--GA--CT-CCCAATCTTAAAAAGAATGGAGACT-GTTA 62 TCATGTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAG-TA * * ** * * ** 1001310 TTAG-AATCGAAACTTGTCTCATTTATG-GTATG 126 -TGGTATTC-AAGTTTGTCTTATTTAAGAG-ACA * * * * ** * * 1001342 AACTTTGATTTAAAAGAAAATAGG-GTAAAGAAAAGATTTTCATGC-AAAAAAAATCATCAGTAT 1 AACTTTGATTT-ACA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * * * 1001405 CATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCTAGAAATA-AATGCAGATCATTA 63 CATGTATCCTATTAAAGG-GACTGTGTTTATGGTGCCTAATCTTGAAA-AGAATGGAGATTAGTA * * * * 1001468 GTAGAATCCATGTTTGTCTTATTTAAG-GTA-A 126 -TGGTATTCAAGTTTGTCTTATTTAAGAG-ACA * * * ** * * 1001499 GAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAGTCCAAAGAACCAATAT 1 -AACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT * * * * * * 1001563 CATGTATCCAAATGAGAA--GACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATAAAT 63 CATGTATCC-TATTA-AAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTAGT * * 1001625 A-GGACTATTCAAGTTTGTCCTATATAAGAGACA 125 ATGG--TATTCAAGTTTGTCTTATTTAAGAGACA * * * ** * 1001658 AATTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTACGGCACCAAAGCATCAATGTC 1 AACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC * * * * * * * 1001723 ATGTATCTTAATGAAA-AGAATGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGA 64 ATGTATCCT-ATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGA 1001779 ATGTTATGAG Statistics Matches: 5760, Mismatches: 1801, Indels: 1234 0.65 0.20 0.14 Matches are distributed among these distances: 142 1 0.00 143 2 0.00 144 40 0.01 145 39 0.01 146 34 0.01 147 71 0.01 148 10 0.00 149 2 0.00 150 2 0.00 151 3 0.00 152 6 0.00 153 5 0.00 154 6 0.00 155 23 0.00 156 102 0.02 157 579 0.10 158 1915 0.33 159 2431 0.42 160 346 0.06 161 121 0.02 162 19 0.00 163 3 0.00 ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32 Consensus pattern (156 bp): AACTTTGATTTACAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAT GTATCCTATTAAAGGGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTATGGTA TTCAAGTTTGTCTTATTTAAGAGACA Found at i:1003148 original size:159 final size:157 Alignment explanation

Indices: 1002509--1003172 Score: 417 Period size: 159 Copynumber: 4.2 Consensus size: 157 1002499 GAGAAGACCA * * * * * * 1002509 TGTTTATGGTGCCTAATCCTGAAAACAATGGGGATTAGTATGATTATTCTTGTTTGTCTTATTTA 1 TGTTTATGGTTCCTAATCCTGAAAAGAATAGGGATTAATATGA--ATTCATGCTTGTCTTATTTA * * * 1002574 AGAGACAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTTCTCGCGACACCAATGCAT 64 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTCGCGAAACCAAAGCAT * * * 1002639 CAATGTCAAGTA-CCTTAATGAAGGAAATG 129 CAATATCATGTATCC-TAATGAAGGGAATG * * * ** * 1002668 TGTTT-TGCCTTCCTAATCTTGAAAAGAGAGGAGGCTG-TTACCA-GAATTAATGCTTGTCTTAT 1 TGTTTATG-GTTCCTAATCCTGAAAAGA-A-TAGG--GATTAATATGAATTCATGCTTGTCTTAT * * * * * * ** * ** 1002730 TTAAGGGATAAACTTCGATTTTAAGC-AAAATAGG-GCAAAGAAAATATTTTCATC-CAAAAGAA 61 TTAAGAGACAAACTTTGATTCT-ATCAAAAAT-GGTGGAAAGAAAAGCTTTTC-TCGCGAAACCA * * * * * 1002792 AATCACCAATATTATTTATCTTAAT-AAGGAGAATG 123 AAGCATCAATATCATGTATCCTAATGAAGG-GAATG * * * * * * * * 1002827 TATTTATAGTTCTTAATCC-CAAAATGAAT-GAAGATCATTACTAGAACTCATGCTTGTCTCT-T 1 TGTTTATGGTTCCTAATCCTGAAAA-GAATAG-GGATTAATA-T-GAATTCATGCTTGTCT-TAT * * ** * * * 1002889 TT--GAGGCATGAGCTTAAACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACC 61 TTAAGAGACA--AACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTCGCGAAACC * * * * 1002949 CAAGCATCAATATCATGTATCCTAATG-AGAAGACTA 122 AAAGCATCAATATCATGTATCCTAATGAAG-GGAATG * * * 1002985 TGTTTATGGTGCGTAATCCTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTA 1 TGTTTATGGTTCCTAATCCTGAAAAGAATAGGGATTAATATGA--ATTCATGCTTGTCTTATTTA * * * * 1003050 AGAGACAAACTTTGATTCTATCAATAATCGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGCAT 64 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTCGCGAAACCAAAGCAT * 1003115 CAATGTCATGTATCCTAATGAAGGGAATG 129 CAATATCATGTATCCTAATGAAGGGAATG * * * 1003144 TGTTTTTGGTTCCCAATCTTGAAAAGAAT 1 TGTTTATGGTTCCTAATCCTGAAAAGAAT 1003173 GGAGACTGTT Statistics Matches: 366, Mismatches: 101, Indels: 76 0.67 0.19 0.14 Matches are distributed among these distances: 155 1 0.00 156 6 0.02 157 9 0.02 158 109 0.30 159 214 0.58 160 18 0.05 161 4 0.01 162 4 0.01 163 1 0.00 ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33 Consensus pattern (157 bp): TGTTTATGGTTCCTAATCCTGAAAAGAATAGGGATTAATATGAATTCATGCTTGTCTTATTTAAG AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTCGCGAAACCAAAGCATCA ATATCATGTATCCTAATGAAGGGAATG Found at i:1007649 original size:28 final size:28 Alignment explanation

Indices: 1007542--1007999 Score: 497 Period size: 28 Copynumber: 16.2 Consensus size: 28 1007532 GATTTAAAAA * * * 1007542 AAATGGTGCCACTAACTTGTGTGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * * * 1007570 AAAAGAGTTACCACCGACTTGTGTGGGCTTTG 1 AAATGA--TGCCACTGAC-T-TGTGGGCTTTG * * * * * 1007602 AAAGGGTATGCCATTAACTTTTGGGTTTTG 1 AAA-TG-ATGCCACTGACTTGTGGGCTTTG * 1007632 AAATGATGCCACTGACTTATGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * * * 1007660 AAAAGATGCCATTGACTTGTAGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * ** * 1007688 AAATGATGCCACTAACTTGTGCACTTTA 1 AAATGATGCCACTGACTTGTGGGCTTTG * * 1007716 AAAT-ACTGTCACTGACTTGTGGGCTTTA 1 AAATGA-TGCCACTGACTTGTGGGCTTTG * * 1007744 AAACGATGCTACTGACTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * 1007772 AAATGGTGCCACTGACTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG ** * 1007800 AAATGATGGTAGTGACTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * 1007828 AAATGATGCCACTGATTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG 1007856 AAATGATGCCACTGACTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * * * 1007884 AAAGGATACCATTGACTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * * 1007912 AAAGGATACCACTGACTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG * * * 1007940 AAAAGATGCCACTAACTTGTGGGC-TTA 1 AAATGATGCCACTGACTTGTGGGCTTTG * * 1007967 AAAAGATACCACTGACTTGTGGGCTTTG 1 AAATGATGCCACTGACTTGTGGGCTTTG 1007995 AAATG 1 AAATG 1008000 TGTAGACACC Statistics Matches: 360, Mismatches: 61, Indels: 18 0.82 0.14 0.04 Matches are distributed among these distances: 27 25 0.07 28 291 0.81 29 2 0.01 30 19 0.05 31 2 0.01 32 19 0.05 33 1 0.00 34 1 0.00 ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32 Consensus pattern (28 bp): AAATGATGCCACTGACTTGTGGGCTTTG Found at i:1008361 original size:13 final size:13 Alignment explanation

Indices: 1008343--1008368 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 1008333 ACATAAGTGT 1008343 TGTATTGATACAA 1 TGTATTGATACAA 1008356 TGTATTGATACAA 1 TGTATTGATACAA 1008369 AGCTACTCTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38 Consensus pattern (13 bp): TGTATTGATACAA Found at i:1009322 original size:20 final size:20 Alignment explanation

Indices: 1009277--1009322 Score: 58 Period size: 21 Copynumber: 2.2 Consensus size: 20 1009267 GTTAACAACC * 1009277 CATGATTCATGCATTTTAAG 1 CATGTTTCATGCATTTTAAG 1009297 CTATGTTTCATGCA-TTTACAG 1 C-ATGTTTCATGCATTTTA-AG 1009318 CATGT 1 CATGT 1009323 CCAGCACCTT Statistics Matches: 23, Mismatches: 1, Indels: 4 0.82 0.04 0.14 Matches are distributed among these distances: 20 9 0.39 21 14 0.61 ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41 Consensus pattern (20 bp): CATGTTTCATGCATTTTAAG Found at i:1011702 original size:27 final size:27 Alignment explanation

Indices: 1011619--1012168 Score: 708 Period size: 27 Copynumber: 20.1 Consensus size: 27 1011609 GTGGGCTTTG * * * * 1011619 AAAGGATGCCACTGACTTATGGGCTTTAA 1 AAAGGATGCCACGGAGTTGTGGAC-TT-A * 1011648 AAAGG-TGCCACTGAGTTGTGGACTTTA 1 AAAGGATGCCACGGAGTTGTGGAC-TTA * * * * 1011675 AAAAGATACCACAGAGTTATGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * * 1011702 AAAGGGTGCCACGGAGTTTTGGACTTTA 1 AAAGGATGCCACGGAGTTGTGGAC-TTA 1011730 AAAGGATGCCA-GAGAGTTGTGGACTTA 1 AAAGGATGCCACG-GAGTTGTGGACTTA * * 1011757 AAAGGATACCACGGAGTTGTGGAATTTA 1 AAAGGATGCCACGGAGTTGTGG-ACTTA 1011785 AAAGGATGCCACGGAGTTGTGGACTTTA 1 AAAGGATGCCACGGAGTTGTGGAC-TTA * * 1011813 AAAGGATGCCATGGAGTTATGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * 1011840 AAAGAATGCCACGGAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * * * 1011867 AAAAGATGACACGAAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA 1011894 AAAGGATGCCACGGAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * 1011921 AAAGGATGCCACGGAGTTGTAGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * * 1011948 AAAGGATGCCACGAAGTTGTAGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * * 1011975 AAATGATGCCACCGAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * 1012002 AAAGGATGCCATGGAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * * * 1012029 AAATGATGCCATGAAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * 1012056 AAAGGATGCCACGTAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA ** 1012083 AAAGGATGCCATAGAGTTGTGGACTTTA 1 AAAGGATGCCACGGAGTTGTGGAC-TTA * 1012111 AAAGGATGCCACGAAGTTGTGGACTTA 1 AAAGGATGCCACGGAGTTGTGGACTTA * 1012138 AAAGGATGCCACAGAGTTGTGGACTTTA 1 AAAGGATGCCACGGAGTTGTGGAC-TTA 1012166 AAA 1 AAA 1012169 AGAAATGTTA Statistics Matches: 461, Mismatches: 52, Indels: 17 0.87 0.10 0.03 Matches are distributed among these distances: 27 319 0.69 28 137 0.30 29 5 0.01 ACGTcount: A:0.33, C:0.14, G:0.29, T:0.25 Consensus pattern (27 bp): AAAGGATGCCACGGAGTTGTGGACTTA Found at i:1013530 original size:13 final size:13 Alignment explanation

Indices: 1013514--1013555 Score: 50 Period size: 14 Copynumber: 3.2 Consensus size: 13 1013504 TGTTATTCCC 1013514 TTTTTTTT-ATTT 1 TTTTTTTTCATTT * 1013526 TTTTTTTGCACTTT 1 TTTTTTTTCA-TTT * 1013540 TTTCTTTTCATTT 1 TTTTTTTTCATTT 1013553 TTT 1 TTT 1013556 ATGCTTTTGC Statistics Matches: 25, Mismatches: 3, Indels: 3 0.81 0.10 0.10 Matches are distributed among these distances: 12 7 0.28 13 7 0.28 14 11 0.44 ACGTcount: A:0.07, C:0.10, G:0.02, T:0.81 Consensus pattern (13 bp): TTTTTTTTCATTT Found at i:1013540 original size:22 final size:23 Alignment explanation

Indices: 1013493--1013542 Score: 66 Period size: 23 Copynumber: 2.2 Consensus size: 23 1013483 CATGTCCTCA * 1013493 TTTTTTATTTTTGTTATTCCCTT 1 TTTTTTATTTTTGTTATTCACTT * 1013516 TTTTTTATTTTT-TTTTTGCACTT 1 TTTTTTATTTTTGTTATT-CACTT 1013539 TTTT 1 TTTT 1013543 CTTTTCATTT Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 22 4 0.17 23 20 0.83 ACGTcount: A:0.08, C:0.10, G:0.04, T:0.78 Consensus pattern (23 bp): TTTTTTATTTTTGTTATTCACTT Found at i:1018495 original size:97 final size:97 Alignment explanation

Indices: 1018244--1018484 Score: 428 Period size: 97 Copynumber: 2.5 Consensus size: 97 1018234 ATTGAAAAAT * * 1018244 GGGGTTGGATTATCCCCTCGGAGGAATAGGGTTGAAGTATCCCCGATGATGACAATTTAAGCGAG 1 GGGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATGATGACAATTTAAGCGAG 1018309 AATAAGATTTAAACTTTGATGAGTTTAAAAGC 66 AATAAGATTTAAACTTTGATGAGTTTAAAAGC * * 1018341 GAGATTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATGATGACAATTTAAGCGAG 1 GGGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATGATGACAATTTAAGCGAG 1018406 AATAAGATTTAAACTTTGATGAGTTTAAAAGC 66 AATAAGATTTAAACTTTGATGAGTTTAAAAGC * * 1018438 GGGGTTGGAGTATCCCCTCGGAGGAATAGAGTTGGAGTATACCCGAT 1 GGGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGAT 1018485 AAATAAAATT Statistics Matches: 136, Mismatches: 8, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 97 136 1.00 ACGTcount: A:0.31, C:0.14, G:0.29, T:0.27 Consensus pattern (97 bp): GGGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATGATGACAATTTAAGCGAG AATAAGATTTAAACTTTGATGAGTTTAAAAGC Found at i:1020892 original size:17 final size:17 Alignment explanation

Indices: 1020878--1020910 Score: 66 Period size: 17 Copynumber: 1.9 Consensus size: 17 1020868 CAATTTTTCT 1020878 TTTTTTTGTATTTTTTA 1 TTTTTTTGTATTTTTTA 1020895 TTTTTTTGTATTTTTT 1 TTTTTTTGTATTTTTT 1020911 CAAATAAGTC Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 16 1.00 ACGTcount: A:0.09, C:0.00, G:0.06, T:0.85 Consensus pattern (17 bp): TTTTTTTGTATTTTTTA Done.