Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold238
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1453955
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 7 of 9
Found at i:1025767 original size:22 final size:21
Alignment explanation
Indices: 1025719--1025772 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1025709 TATGGGTGAA
*
1025719 TTAATTATTTATATAATTAAT
1 TTAAATATTTATATAATTAAT
**
1025740 TT-AATATTTATATAATCTTGT
1 TTAAATATTTATATAAT-TAAT
1025761 TTAAATATTTAT
1 TTAAATATTTAT
1025773 CTATAAAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 13 0.46
21 6 0.21
22 9 0.32
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TTAAATATTTATATAATTAAT
Found at i:1035313 original size:1 final size:1
Alignment explanation
Indices: 1035307--1035354 Score: 69
Period size: 1 Copynumber: 48.0 Consensus size: 1
1035297 AAAGTGTTTG
***
1035307 AAAAAAAAAAAAAAAAAAAAAAATTGAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1035355 TTTAAATGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.94, C:0.00, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:1035340 original size:26 final size:26
Alignment explanation
Indices: 1035304--1035354 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1035294 GATAAAGTGT
1035304 TTGAAAAAAAAAAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAAAAAAAAAAA
1035330 TTGAAAAAAAAAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAAAAAAAAAA
1035355 TTTAAATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.88, C:0.00, G:0.04, T:0.08
Consensus pattern (26 bp):
TTGAAAAAAAAAAAAAAAAAAAAAAA
Found at i:1035342 original size:25 final size:25
Alignment explanation
Indices: 1035308--1035356 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
1035298 AAGTGTTTGA
1035308 AAAAAAAAAAAAAAAAAAAAAATTG
1 AAAAAAAAAAAAAAAAAAAAAATTG
1035333 AAAAAAAAAAAAAAAAAAAAAATT
1 AAAAAAAAAAAAAAAAAAAAAATT
1035357 TAAATGTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.90, C:0.00, G:0.02, T:0.08
Consensus pattern (25 bp):
AAAAAAAAAAAAAAAAAAAAAATTG
Found at i:1035383 original size:21 final size:21
Alignment explanation
Indices: 1035359--1035415 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1035349 AAAAAATTTA
1035359 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
1035380 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
1035401 AATGTATCGATACAT
1 AATGTATCGATACAT
1035416 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1035495 original size:19 final size:19
Alignment explanation
Indices: 1035471--1035538 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1035461 AATTCAACAA
1035471 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1035490 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1035505 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1035522 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1035539 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1035510 original size:13 final size:13
Alignment explanation
Indices: 1035492--1035516 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1035482 ACATAAGTTT
1035492 TGTATCGATACAA
1 TGTATCGATACAA
1035505 TGTATCGATACA
1 TGTATCGATACA
1035517 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1035514 original size:32 final size:32
Alignment explanation
Indices: 1035473--1035535 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1035463 TTCAACAATT
*
1035473 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1035505 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1035536 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1035596 original size:13 final size:13
Alignment explanation
Indices: 1035578--1035603 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1035568 CATTTTTCTG
1035578 TGTATCGATACAT
1 TGTATCGATACAT
1035591 TGTATCGATACAT
1 TGTATCGATACAT
1035604 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1035600 original size:33 final size:33
Alignment explanation
Indices: 1035558--1035624 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1035548 GCCAAGGAAA
***
1035558 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1035591 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1035624 T
1 T
1035625 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1038145 original size:28 final size:27
Alignment explanation
Indices: 1038078--1038150 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
1038068 CTTCACAATC
* *
1038078 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
1038105 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
1038133 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
1038151 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:1038295 original size:105 final size:104
Alignment explanation
Indices: 1037966--1038407 Score: 444
Period size: 104 Copynumber: 4.2 Consensus size: 104
1037956 CTCAATTCTC
* * * * * * ** *
1037966 CACAATCGAGGATATTCCAACTCCGATTTTACTTTCAAAACATTAATTTT-CTATAATCGGGGAT
1 CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
1038030 ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
66 ACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TT
* ***** * * ** * *
1038071 CACAATCGGGGACACTCCAACCCC-GTTAATCATCGGGGATACTCCAA--CCCCGTTATTTCTGA
1 CACAATCGGGGATACTCCAACCCCGGTT--TCATTTTCAAAACACCAATTTTCCTTTA-ATC---
* * * * *
1038133 GGGGATACTCCAACCCCGACTTTATTTTC-AAAATATCGATTTTT
60 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
* *
1038177 CATAATCGGGGATACTCCAACCCCGGTTTCATTTTCACAACACCAATTTCTCCTTTAATCGGGGA
1 CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTT-TCCTTTAATCGGGGA
*
1038242 TACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTT
65 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
* * * *
1038282 CACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGAT
1 CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
1038347 ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
66 ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
* *
1038386 CATAATCGAGGATACTCCAACC
1 CACAATCGGGGATACTCCAACC
1038408 TCGTTATTTC
Statistics
Matches: 268, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
104 100 0.37
105 89 0.33
106 33 0.12
107 15 0.06
108 5 0.02
109 26 0.10
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (104 bp):
CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
Found at i:1038302 original size:52 final size:51
Alignment explanation
Indices: 1037969--1038406 Score: 305
Period size: 51 Copynumber: 8.4 Consensus size: 51
1037959 AATTCTCCAC
* * * * **
1037969 AATCGAGGATATTCCAACTCCGATTTTACTTTCAAAACATTAA-TTTTCTAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTTTTC-AT
* * *
1038020 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCAC
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC--AAAATACCAATTT-TTCAT
* * * ** ***
1038074 AATCGGGGACACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGTTATTTC-T
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAATA--CCAA-----TT-TTTCAT
* * * * *
1038131 GA--GGGGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTTTTCAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTTTTCAT
* * * * * * *
1038180 AATCGGGGATACTCCAACCCCGGTTTCATTTTCACAACACCAATTTCTCCTTT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTT-TTC-AT
* * *
1038233 AATCGGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCAC
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAATACCAATTTTTCAT
* ** * *
1038285 AATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTT
1 AATCGGGGATACTCCAACTCC-GATTTTATTTTCAAAATACCAATTTTTC-AT
*
1038337 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAATACCAATTTTTCAT
*
1038389 AATCGAGGATACTCCAAC
1 AATCGGGGATACTCCAAC
1038407 CTCGTTATTT
Statistics
Matches: 300, Mismatches: 63, Indels: 47
0.73 0.15 0.11
Matches are distributed among these distances:
48 4 0.01
49 4 0.01
51 82 0.27
52 79 0.26
53 59 0.20
54 36 0.12
55 20 0.07
56 3 0.01
57 7 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTTTTCAT
Found at i:1038426 original size:28 final size:28
Alignment explanation
Indices: 1038390--1038466 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
1038380 ATTTTTCATA
* * *
1038390 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
1038418 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
1038446 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1038467 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1038532 original size:107 final size:107
Alignment explanation
Indices: 1038024--1038545 Score: 314
Period size: 104 Copynumber: 4.9 Consensus size: 107
1038014 TTCTATAATC
* * * * * *
1038024 GGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGACACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCC-AAAAATACCAATTTC-TCATAATCGAGGATACTCC
* * *
1038089 AACCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTCTGA
64 AACCCCGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGA
* * * * *
1038133 GGGGATACTCCAACCCCGACTTTATTTTC-AAAATATCGATTTTTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
* * * *
1038197 CCCCGGTTTCATTTTCAC----A-ACACCAATTTCTCCTTTA-AT-C--
66 CCCC-G-TT-A-TTTCACGGGGATACTCCAA---CCCCGTTACTTCCGA
** * * * *
1038237 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
** * * ** * *
1038302 TCCTGGTTTTATTTTCA-----AAACGCCAATTTTCCTTTA-AT-C--
66 -CCCCG--TTA-TTTCACGGGGATACTCCAA--CCCCGTTACTTCCGA
* * *
1038341 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCATAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
*
1038406 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGA
* * *** * * *
1038449 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGGTACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
*
1038513 CCCCGTTATTTTCGA-GGGGATACTCCAATCCCG
66 CCCCGTTA-TTTC-ACGGGGATACTCCAACCCCG
1038546 ATTTTTTTTT
Statistics
Matches: 340, Mismatches: 49, Indels: 50
0.77 0.11 0.11
Matches are distributed among these distances:
100 5 0.01
101 3 0.01
103 4 0.01
104 105 0.31
105 53 0.16
106 37 0.11
107 68 0.20
108 33 0.10
109 28 0.08
110 1 0.00
111 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
CCCCGTTATTTCACGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:1038588 original size:79 final size:79
Alignment explanation
Indices: 1038420--1038622 Score: 219
Period size: 79 Copynumber: 2.6 Consensus size: 79
1038410 GTTATTTCAT
* * *
1038420 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
* * * *
1038485 TGATTTCTCATAAT
66 CGATTCCTCACAAC
* * * * * ** *
1038499 TGGGGGTACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTTC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAAT-A
1038563 TCGATTCCTCACAAC
65 TCGATTCCTCACAAC
* * * *
1038578 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC
1038623 TGTTATTATC
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
78 3 0.03
79 98 0.97
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
CGATTCCTCACAAC
Found at i:1051058 original size:15 final size:15
Alignment explanation
Indices: 1051038--1051103 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
1051028 CCTTCTCTTC
1051038 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
1051053 AAAAAAAAAAACAAA-
1 AAAAAAAAAAA-AAAG
* *
1051068 AAAAACAAAACAAAG
1 AAAAAAAAAAAAAAG
* * *
1051083 AAAAAGAGAGAAAAG
1 AAAAAAAAAAAAAAG
1051098 AAAAAA
1 AAAAAA
1051104 CCTACTTAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
14 3 0.07
15 36 0.86
16 3 0.07
ACGTcount: A:0.86, C:0.05, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:1051103 original size:1 final size:1
Alignment explanation
Indices: 1051038--1051087 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
1051028 CCTTCTCTTC
* * * * *
1051038 AAAAAAAAAAAAAAGAAAAAAAAAAACAAAAAAAACAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1051088 GAGAGAAAAG
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.06, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:1052154 original size:55 final size:55
Alignment explanation
Indices: 1052069--1052857 Score: 1179
Period size: 55 Copynumber: 14.3 Consensus size: 55
1052059 TCCGCTTTTT
*
1052069 AGTCCCCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
*
1052124 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-C
* *
1052179 AGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-C
*
1052234 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-C
*
1052289 AGTCCTCAACGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
1052344 AGTCCCCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTGGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACC-TTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
*
1052400 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA--TTGTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-T-C
1052455 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
*
1052510 AGTCCCCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
*
1052565 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-C
*
1052620 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-C
1052675 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
1052730 ATTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTGGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
1052785 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
1052840 ACTCCTCAATGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
1052858 TACAACTTAT
Statistics
Matches: 687, Mismatches: 31, Indels: 32
0.92 0.04 0.04
Matches are distributed among these distances:
53 2 0.00
54 13 0.02
55 608 0.89
56 62 0.09
57 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:1052561 original size:29 final size:29
Alignment explanation
Indices: 1052473--1052561 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
1052463 AAGAGCAGGA
1052473 CACCTCTTAAAGCCCACACAAGTTGGTGG
1 CACCTCTTAAAGCCCACACAAGTTGGTGG
* * **
1052502 CACCT-TT-CAGTCCC-CA-AAG-AGCAGG
1 CACCTCTTAAAG-CCCACACAAGTTGGTGG
1052527 ACACCTCTTAAAGCCCACACAAGTTGGTGG
1 -CACCTCTTAAAGCCCACACAAGTTGGTGG
1052557 CACCT
1 CACCT
1052562 TTCAGTCCTC
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
25 3 0.07
26 8 0.18
27 9 0.20
28 9 0.20
29 13 0.29
30 3 0.07
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (29 bp):
CACCTCTTAAAGCCCACACAAGTTGGTGG
Found at i:1053460 original size:1 final size:1
Alignment explanation
Indices: 1053454--1053499 Score: 65
Period size: 1 Copynumber: 46.0 Consensus size: 1
1053444 AAAGTGTTTG
***
1053454 AAAAAAAAAAAAAAAAAAAAAATTGAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1053500 TTTAAATGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.93, C:0.00, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:1053485 original size:25 final size:25
Alignment explanation
Indices: 1053451--1053499 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
1053441 GATAAAGTGT
1053451 TTGAAAAAAAAAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAAAAAAAAAA
1053476 TTGAAAAAAAAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAAAAAAAAA
1053500 TTTAAATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.88, C:0.00, G:0.04, T:0.08
Consensus pattern (25 bp):
TTGAAAAAAAAAAAAAAAAAAAAAA
Found at i:1053487 original size:24 final size:24
Alignment explanation
Indices: 1053455--1053501 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
1053445 AAGTGTTTGA
1053455 AAAAAAAAAAAAAAAAAAAAATTG
1 AAAAAAAAAAAAAAAAAAAAATTG
1053479 AAAAAAAAAAAAAAAAAAAAATT
1 AAAAAAAAAAAAAAAAAAAAATT
1053502 TAAATGTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.89, C:0.00, G:0.02, T:0.09
Consensus pattern (24 bp):
AAAAAAAAAAAAAAAAAAAAATTG
Found at i:1053528 original size:21 final size:21
Alignment explanation
Indices: 1053504--1053560 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1053494 AAAAAATTTA
1053504 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
1053525 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
1053546 AATGTATCGATACAT
1 AATGTATCGATACAT
1053561 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1053640 original size:19 final size:19
Alignment explanation
Indices: 1053616--1053683 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1053606 AATTCAACAA
1053616 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1053635 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1053650 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1053667 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1053684 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1053655 original size:13 final size:13
Alignment explanation
Indices: 1053637--1053661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1053627 ACATAAGTTT
1053637 TGTATCGATACAA
1 TGTATCGATACAA
1053650 TGTATCGATACA
1 TGTATCGATACA
1053662 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1053659 original size:32 final size:32
Alignment explanation
Indices: 1053618--1053680 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1053608 TTCAACAATT
*
1053618 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1053650 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1053681 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1053741 original size:13 final size:13
Alignment explanation
Indices: 1053723--1053748 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1053713 CATTTTTCTG
1053723 TGTATCGATACAT
1 TGTATCGATACAT
1053736 TGTATCGATACAT
1 TGTATCGATACAT
1053749 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1053745 original size:33 final size:33
Alignment explanation
Indices: 1053703--1053769 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1053693 GCCAAGGAAA
***
1053703 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1053736 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1053769 T
1 T
1053770 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1056290 original size:28 final size:27
Alignment explanation
Indices: 1056223--1056295 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
1056213 CTTCACAATC
* *
1056223 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
1056250 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
1056278 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
1056296 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:1056440 original size:105 final size:104
Alignment explanation
Indices: 1056111--1056552 Score: 444
Period size: 104 Copynumber: 4.2 Consensus size: 104
1056101 CTCAATTCTC
* * * * * * ** *
1056111 CACAATCGAGGATATTCCAACTCCGATTTTACTTTCAAAACATTAATTTT-CTATAATCGGGGAT
1 CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
1056175 ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
66 ACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TT
* ***** * * ** * *
1056216 CACAATCGGGGACACTCCAACCCC-GTTAATCATCGGGGATACTCCAA--CCCCGTTATTTCTGA
1 CACAATCGGGGATACTCCAACCCCGGTT--TCATTTTCAAAACACCAATTTTCCTTTA-ATC---
* * * * *
1056278 GGGGATACTCCAACCCCGACTTTATTTTC-AAAATATCGATTTTT
60 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
* *
1056322 CATAATCGGGGATACTCCAACCCCGGTTTCATTTTCACAACACCAATTTCTCCTTTAATCGGGGA
1 CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTT-TCCTTTAATCGGGGA
*
1056387 TACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTT
65 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
* * * *
1056427 CACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGAT
1 CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
1056492 ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
66 ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
* *
1056531 CATAATCGAGGATACTCCAACC
1 CACAATCGGGGATACTCCAACC
1056553 TCGTTATTTC
Statistics
Matches: 268, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
104 100 0.37
105 89 0.33
106 33 0.12
107 15 0.06
108 5 0.02
109 26 0.10
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (104 bp):
CACAATCGGGGATACTCCAACCCCGGTTTCATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
Found at i:1056447 original size:52 final size:51
Alignment explanation
Indices: 1056114--1056551 Score: 305
Period size: 51 Copynumber: 8.4 Consensus size: 51
1056104 AATTCTCCAC
* * * * **
1056114 AATCGAGGATATTCCAACTCCGATTTTACTTTCAAAACATTAA-TTTTCTAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTTTTC-AT
* * *
1056165 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCAC
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC--AAAATACCAATTT-TTCAT
* * * ** ***
1056219 AATCGGGGACACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGTTATTTC-T
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAATA--CCAA-----TT-TTTCAT
* * * * *
1056276 GA--GGGGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTTTTCAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTTTTCAT
* * * * * * *
1056325 AATCGGGGATACTCCAACCCCGGTTTCATTTTCACAACACCAATTTCTCCTTT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTT-TTC-AT
* * *
1056378 AATCGGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCAC
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAATACCAATTTTTCAT
* ** * *
1056430 AATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTT
1 AATCGGGGATACTCCAACTCC-GATTTTATTTTCAAAATACCAATTTTTC-AT
*
1056482 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAATACCAATTTTTCAT
*
1056534 AATCGAGGATACTCCAAC
1 AATCGGGGATACTCCAAC
1056552 CTCGTTATTT
Statistics
Matches: 300, Mismatches: 63, Indels: 47
0.73 0.15 0.11
Matches are distributed among these distances:
48 4 0.01
49 4 0.01
51 82 0.27
52 79 0.26
53 59 0.20
54 36 0.12
55 20 0.07
56 3 0.01
57 7 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAATACCAATTTTTCAT
Found at i:1056571 original size:28 final size:28
Alignment explanation
Indices: 1056535--1056611 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
1056525 ATTTTTCATA
* * *
1056535 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
1056563 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
1056591 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1056612 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1056677 original size:107 final size:107
Alignment explanation
Indices: 1056169--1056690 Score: 314
Period size: 104 Copynumber: 4.9 Consensus size: 107
1056159 TTCTATAATC
* * * * * *
1056169 GGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGACACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCC-AAAAATACCAATTTC-TCATAATCGAGGATACTCC
* * *
1056234 AACCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTCTGA
64 AACCCCGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGA
* * * * *
1056278 GGGGATACTCCAACCCCGACTTTATTTTC-AAAATATCGATTTTTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
* * * *
1056342 CCCCGGTTTCATTTTCAC----A-ACACCAATTTCTCCTTTA-AT-C--
66 CCCC-G-TT-A-TTTCACGGGGATACTCCAA---CCCCGTTACTTCCGA
** * * * *
1056382 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
** * * ** * *
1056447 TCCTGGTTTTATTTTCA-----AAACGCCAATTTTCCTTTA-AT-C--
66 -CCCCG--TTA-TTTCACGGGGATACTCCAA--CCCCGTTACTTCCGA
* * *
1056486 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCATAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
*
1056551 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGA
* * *** * * *
1056594 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGGTACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
*
1056658 CCCCGTTATTTTCGA-GGGGATACTCCAATCCCG
66 CCCCGTTA-TTTC-ACGGGGATACTCCAACCCCG
1056691 ATTTTTTTTT
Statistics
Matches: 340, Mismatches: 49, Indels: 50
0.77 0.11 0.11
Matches are distributed among these distances:
100 5 0.01
101 3 0.01
103 4 0.01
104 105 0.31
105 53 0.16
106 37 0.11
107 68 0.20
108 33 0.10
109 28 0.08
110 1 0.00
111 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
CCCCGTTATTTCACGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:1056733 original size:79 final size:79
Alignment explanation
Indices: 1056565--1056767 Score: 219
Period size: 79 Copynumber: 2.6 Consensus size: 79
1056555 GTTATTTCAT
* * *
1056565 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
* * * *
1056630 TGATTTCTCATAAT
66 CGATTCCTCACAAC
* * * * * ** *
1056644 TGGGGGTACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTTC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAAT-A
1056708 TCGATTCCTCACAAC
65 TCGATTCCTCACAAC
* * * *
1056723 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC
1056768 TGTTATTATC
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
78 3 0.03
79 98 0.97
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
CGATTCCTCACAAC
Found at i:1058755 original size:21 final size:20
Alignment explanation
Indices: 1058717--1058755 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
1058707 GCAATCCATT
*
1058717 AATAGTCTTATATATCCTAC
1 AATAGTCCTATATATCCTAC
*
1058737 AATAGATCCTATATCTCCT
1 AATAG-TCCTATATATCCT
1058756 CCTGTATGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (20 bp):
AATAGTCCTATATATCCTAC
Found at i:1066188 original size:13 final size:13
Alignment explanation
Indices: 1066170--1066199 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1066160 AATTATTGAC
1066170 AAGGACAAGATCA
1 AAGGACAAGATCA
1066183 AAGGACAAGATCA
1 AAGGACAAGATCA
1066196 AAGG
1 AAGG
1066200 TTATCTGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.13, G:0.27, T:0.07
Consensus pattern (13 bp):
AAGGACAAGATCA
Found at i:1067268 original size:21 final size:21
Alignment explanation
Indices: 1067242--1067281 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1067232 TACATTTTTC
* *
1067242 CCTTTGATGTATTGATACATG
1 CCTTTGATGCATCGATACATG
1067263 CCTTTGATGCATCGATACA
1 CCTTTGATGCATCGATACA
1067282 AGGTCTTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (21 bp):
CCTTTGATGCATCGATACATG
Found at i:1067345 original size:21 final size:21
Alignment explanation
Indices: 1067319--1067394 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
1067309 TTCTACAATT
1067319 TGTATCGATACAAATAATAAA
1 TGTATCGATACAAATAATAAA
*
1067340 TGTATCGATAC--ATAAGTGAA
1 TGTATCGATACAAATAA-TAAA
** *
1067360 TGTATCGATACATGT-CTACAA
1 TGTATCGATACAAATAATA-AA
1067381 TGTATCGATACAAA
1 TGTATCGATACAAA
1067395 ACCACCCTGC
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 4 0.09
20 15 0.33
21 25 0.56
22 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.30
Consensus pattern (21 bp):
TGTATCGATACAAATAATAAA
Found at i:1069948 original size:79 final size:79
Alignment explanation
Indices: 1069865--1070210 Score: 299
Period size: 79 Copynumber: 4.4 Consensus size: 79
1069855 ACATATCAAT
* * * *
1069865 TTTTCATCTCGTGGATGCTCTAACCCCATTATATCTGAGGGGATACTCCAACCTCATTTTTATTT
1 TTTTCATCTCGAGGATACTCCAACCCCATTATATCTAAGGGGATACTCCAACCTCATTTTTATTT
* *
1069930 TAAAAAAATTAAAA
66 CAAAAATATTAAAA
* * * * ** * * * * *
1069944 TTTTCATCTTGGGGATATTCTAACCCTGTTATTTTTAAGGGGATACTCTAACCTCGTTTTTACTT
1 TTTTCATCTCGAGGATACTCCAACCCCATTATATCTAAGGGGATACTCCAACCTCATTTTTATTT
1070009 CAAAAATATT-AAA
66 CAAAAATATTAAAA
* * * *
1070022 TTCTTTATCTCGAGGATACTCCAAACCCATCA-ATTCCT-AGGGGATACTCCAACCCCATTTTTA
1 TT-TTCATCTCGAGGATACTCCAACCCCATTATA-T-CTAAGGGGATACTCCAACCTCATTTTTA
1070085 TTTCCAAAAATATTAAAA
63 TTT-CAAAAATATTAAAA
* * * * * ***
1070103 TTTTTATCGCGAGGATACTCCAACCCCGTTGT-TTTCAAGGGGATACTCCAACC-CCGCTTTATT
1 TTTTCATCTCGAGGATACTCCAACCCCATTATATCT-AAGGGGATACTCCAACCTCATTTTTATT
* * *
1070166 TCCAAAGTATTAAAT
65 TCAAAAATATTAAAA
*
1070181 TTTTCGTCTC-AGGGATACTCCAACCCCATT
1 TTTTCATCTCGA-GGATACTCCAACCCCATT
1070211 TTTATTTTCA
Statistics
Matches: 213, Mismatches: 45, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
77 1 0.00
78 41 0.19
79 115 0.54
80 51 0.24
81 5 0.02
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (79 bp):
TTTTCATCTCGAGGATACTCCAACCCCATTATATCTAAGGGGATACTCCAACCTCATTTTTATTT
CAAAAATATTAAAA
Found at i:1070074 original size:158 final size:158
Alignment explanation
Indices: 1069902--1070209 Score: 388
Period size: 158 Copynumber: 1.9 Consensus size: 158
1069892 ATTATATCTG
* * ** * * *
1069902 AGGGGATACTCCAACCTCATTTTTATTT-TAAAAAAATTAAAATTTTCATCTTGGGGATATTCTA
1 AGGGGATACTCCAACCCCATTTTTATTTCCAAAAAAATTAAAATTTTCATCGCGAGGATACTCCA
* * * * *
1069966 ACCCTGTTATTTTTAAGGGGATACTCTAACCTCGTTTTTACTTCAAAAATATTAAATTCTTT-AT
66 ACCCCGTTATTTTCAAGGGGATACTCCAACCCCG-CTTTACTTCAAAAATATTAAATT-TTTCAT
1070030 CTC-GAGGATACTCCAAACCCATCAATTCCT
129 CTCAG-GGATACTCCAAACCCATCAATTCCT
* *
1070060 AGGGGATACTCCAACCCCATTTTTATTTCCAAAAATATTAAAATTTTTATCGCGAGGATACTCCA
1 AGGGGATACTCCAACCCCATTTTTATTTCCAAAAAAATTAAAATTTTCATCGCGAGGATACTCCA
* * * * *
1070125 ACCCCGTTGTTTTCAAGGGGATACTCCAACCCCGCTTTATTTCCAAAGTATTAAATTTTTCGTCT
66 ACCCCGTTATTTTCAAGGGGATACTCCAACCCCGCTTTACTTCAAAAATATTAAATTTTTCATCT
*
1070190 CAGGGATACTCCAACCCCAT
131 CAGGGATACTCCAAACCCAT
1070210 TTTTATTTTC
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
157 3 0.02
158 66 0.52
159 58 0.46
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (158 bp):
AGGGGATACTCCAACCCCATTTTTATTTCCAAAAAAATTAAAATTTTCATCGCGAGGATACTCCA
ACCCCGTTATTTTCAAGGGGATACTCCAACCCCGCTTTACTTCAAAAATATTAAATTTTTCATCT
CAGGGATACTCCAAACCCATCAATTCCT
Found at i:1070196 original size:50 final size:50
Alignment explanation
Indices: 1070142--1070251 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 50
1070132 TGTTTTCAAG
* * *
1070142 GGGATACTCCAACCCC-GCTTTATTTCCAAAGTATTAAATTTTTCGTCTC
1 GGGATACTCCAACCCCAGCTTTATTTCCAAAATATTAAAATTTTCATCTC
** *
1070191 AGGGATACTCCAACCCCATTTTTATTTTCAAAATATTAAAATTTTCATCTC
1 -GGGATACTCCAACCCCAGCTTTATTTCCAAAATATTAAAATTTTCATCTC
1070242 GAGGATACTC
1 G-GGATACTC
1070252 TGCCCTCATT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
50 17 0.33
51 35 0.67
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (50 bp):
GGGATACTCCAACCCCAGCTTTATTTCCAAAATATTAAAATTTTCATCTC
Found at i:1070295 original size:130 final size:131
Alignment explanation
Indices: 1070062--1070336 Score: 324
Period size: 130 Copynumber: 2.1 Consensus size: 131
1070052 CAATTCCTAG
*
1070062 GGGATACTCCAACCCCATTTTTATTTCCAAAAATATTAAAATTTTTATCGCGAGGATACTCCAAC
1 GGGATACTCCAACCCCATTTTTATTTCCAAAAATATTAAAATTTTCATCGCGAGGATACTCCAAC
* * * * * *
1070127 CCCGTTGTTTTCAAGGGGATACTCCAACCCCGCTTTATTTCCAAAGTATTAAATTTTTCGTC-TC
66 CCCATTGTTTTCAAAGGAATACTCCAACCCAGCTTTATTTCCAAAATATTAAATTTTTCATCATC
1070191 A
131 A
* * **
1070192 GGGATACTCCAACCCCATTTTTATTTTC-AAAATATTAAAATTTTCATCTCGAGGATACT-CTGC
1 GGGATACTCCAACCCCATTTTTATTTCCAAAAATATTAAAATTTTCATCGCGAGGATACTCCAAC
* * * ** *
1070255 CCTCATTAG-TTTCAAAGGAATATTCTAAGCCTATTTTTATTTTCAAAATATTAAATTTTTCATC
66 CC-CATT-GTTTTCAAAGGAATACTCCAA-CCCAGCTTTATTTCCAAAATATTAAATTTTTCATC
*
1070319 ATCG
128 ATCA
*
1070323 GGGGTACTCCAACC
1 GGGATACTCCAACC
1070337 TTGTATTCAG
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
128 4 0.03
129 47 0.39
130 56 0.46
131 15 0.12
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (131 bp):
GGGATACTCCAACCCCATTTTTATTTCCAAAAATATTAAAATTTTCATCGCGAGGATACTCCAAC
CCCATTGTTTTCAAAGGAATACTCCAACCCAGCTTTATTTCCAAAATATTAAATTTTTCATCATC
A
Found at i:1076490 original size:30 final size:30
Alignment explanation
Indices: 1076449--1076505 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
1076439 GTAAAGTAAC
* *
1076449 CTTTTCAAAGTCTATGACTTAGTGGCATCT
1 CTTTACAAAGTCCATGACTTAGTGGCATCT
*
1076479 CTTTACAAAGTCCATGACTTCGTGGCA
1 CTTTACAAAGTCCATGACTTAGTGGCA
1076506 CTCCTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (30 bp):
CTTTACAAAGTCCATGACTTAGTGGCATCT
Found at i:1076686 original size:123 final size:122
Alignment explanation
Indices: 1076522--1077091 Score: 609
Period size: 123 Copynumber: 4.6 Consensus size: 122
1076512 TTATCATTTT
* * * *
1076522 AGTCCTCAAAGAGCAAGATGTTTTTTTCTTTTTAAAGCCCACACGAGTTAATGGCACCTTTTAGA
1 AGTCCTCAAAGAGC-AGATG-CTTTTTCTTTTTAAAGCCCACACGAGTTAGTAGCACCTTTTAGT
* * *
1076587 CCTCAAAGAGTAGGACTCCTTTTTCTTTTTAAAGCCTACATGAGTTGGTGGCACCTTTA
64 CCTCAAAGAGCAGGACTCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTA
* * *
1076646 AGTCCTCAAAGAGCAGCATGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACTTTTTAGTC
1 AGTCCTCAAAGAGCAG-ATGCTTTTTCTTTTTAAAGCCCACACGAGTTAGTAGCACCTTTTAGTC
* * * *
1076711 CTAAAAGAGCAGGACTCTTTTTTCTATTTAAAGCCCACACGAGTTGGTGGCATCTTTA
65 CTCAAAGAGCAGGACTCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTA
* * * * * *
1076769 GGTCCACAAAGAGTATGACGC-TTTT-GTTTTAAAGCCCACACGAGTTGGTAGCACC-TTTAGGT
1 AGTCCTCAAAGAGCA-GATGCTTTTTCTTTTTAAAGCCCACACGAGTTAGTAGCACCTTTTA-GT
* * * *
1076831 CCTCAAAGAGCAGAAAGT--TTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCACCTTTT
64 CCTCAAAGAGCAG-GACTCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTA
* * * * *
1076889 AGCCCTCAAAGAGCAGGATAACTTTTTCTTTTTAAGGCCCATACGAGTTAGTAGCACTTTTTAGT
1 AGTCCTCAAAGAGCA-GAT-GCTTTTTCTTTTTAAAGCCCACACGAGTTAGTAGCACCTTTTAGT
* * * *
1076954 CCTTAAAAAGCAGGA-TGCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-
64 CCTCAAAGAGCAGGACTCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTA
* * * * *
1077011 TGATCTTCAAAGAGCAGGACGCCTTTTTC-TTTTAAAGCCCACTA-GAGTTAGTTGCACATTTTA
1 AG-TCCTCAAAGAGCA-GATG-CTTTTTCTTTTTAAAGCCCAC-ACGAGTTAGTAGCACCTTTTA
* *
1077074 GTTCTTAAAGAGCAGGAC
62 GTCCTCAAAGAGCAGGAC
1077092 GCATTTCTTT
Statistics
Matches: 378, Mismatches: 54, Indels: 29
0.82 0.12 0.06
Matches are distributed among these distances:
120 53 0.14
121 43 0.11
122 55 0.15
123 205 0.54
124 22 0.06
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (122 bp):
AGTCCTCAAAGAGCAGATGCTTTTTCTTTTTAAAGCCCACACGAGTTAGTAGCACCTTTTAGTCC
TCAAAGAGCAGGACTCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTA
Found at i:1076694 original size:61 final size:61
Alignment explanation
Indices: 1076518--1077090 Score: 622
Period size: 61 Copynumber: 9.4 Consensus size: 61
1076508 CCTTTTATCA
* * **
1076518 TTTTAGTCCTCAAAGAGCAAGATGTTTTTTTCTTTTTAAAGCCCACACGAGTTAATGGCACC
1 TTTTAGTCCTCAAAGAGCAGGATG-CTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * * * *
1076580 TTTTAGACCTCAAAGAGTAGGACTCCTTTTTCTTTTTAAAGCCTACATGAGTTGGTGGCACC
1 TTTTAGTCCTCAAAGAGCAGGA-TGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * *
1076642 TTTAAGTCCTCAAAGAGCAGCATGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACT
1 TTTTAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * *
1076703 TTTTAGTCCTAAAAGAGCAGGACT-CTTTTTTCTATTTAAAGCCCACACGAGTTGGTGGCATC
1 TTTTAGTCCTCAAAGAGCAGGA-TGC-TTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * * * * *
1076765 -TTTAGGTCCACAAAGAGTATGACGC-TTTT-GTTTTAAAGCCCACACGAGTTGGTAGCACC
1 TTTTA-GTCCTCAAAGAGCAGGATGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * * *
1076824 -TTTAGGTCCTCAAAGAGCAGAAAGTTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCACC
1 TTTTA-GTCCTCAAAGAGCAGGATGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * * * * * *
1076885 TTTTAGCCCTCAAAGAGCAGGATAACTTTTTCTTTTTAAGGCCCATACGAGTTAGTAGCACT
1 TTTTAGTCCTCAAAGAGCAGGAT-GCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * *
1076947 TTTTAGTCCTTAAAAAGCAGGATGCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
1 TTTTAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
* * * * *
1077008 TTTT-GATCTTCAAAGAGCAGGACGCCTTTTTC-TTTTAAAGCCCACTA-GAGTTAGTTGCACA
1 TTTTAG-TCCTCAAAGAGCAGGATG-CTTTTTCTTTTTAAAGCCCAC-ACGAGTTGGTGGCACC
* *
1077069 TTTTAGTTCTTAAAGAGCAGGA
1 TTTTAGTCCTCAAAGAGCAGGA
1077091 CGCATTTCTT
Statistics
Matches: 425, Mismatches: 73, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
59 45 0.11
60 9 0.02
61 190 0.45
62 180 0.42
63 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (61 bp):
TTTTAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
Found at i:1077162 original size:42 final size:41
Alignment explanation
Indices: 1077080--1077219 Score: 151
Period size: 42 Copynumber: 3.4 Consensus size: 41
1077070 TTTAGTTCTT
* *
1077080 AAAGAGCAGGACGCA-TTTCTTTC-TTTTCCCTTTGTCCTC
1 AAAGAGCAGGACGCACTTTATTTCTTTTTTCCTTTGTCCTC
*
1077119 AAAGAACAGGACGCACTTTATTTGCTTTTTTCCTTTGTCCTC
1 AAAGAGCAGGACGCACTTTATTT-CTTTTTTCCTTTGTCCTC
* * * * *
1077161 AAAGAGCAAGACGCACCTCATTT-TCTTTTCTCTTTATCCTC
1 AAAGAGCAGGACGCACTTTATTTCTTTTTTC-CTTTGTCCTC
* *
1077202 AAAGAGCAAGACACACTT
1 AAAGAGCAGGACGCACTT
1077220 CACTATGCTA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 14 0.16
40 12 0.14
41 26 0.30
42 34 0.40
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (41 bp):
AAAGAGCAGGACGCACTTTATTTCTTTTTTCCTTTGTCCTC
Found at i:1084133 original size:27 final size:27
Alignment explanation
Indices: 1084094--1084149 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
1084084 AATTGTAGTT
* * * *
1084094 GAAAGGTGGGGTTGGAGTATCCCCTTG
1 GAAAGATGAGGTTGGAATATCCCCGTG
1084121 GAAAGATGAGGTTGGAATATCCCCGTG
1 GAAAGATGAGGTTGGAATATCCCCGTG
1084148 GA
1 GA
1084150 TGACAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.14, G:0.38, T:0.23
Consensus pattern (27 bp):
GAAAGATGAGGTTGGAATATCCCCGTG
Found at i:1087456 original size:102 final size:102
Alignment explanation
Indices: 1087330--1087538 Score: 409
Period size: 102 Copynumber: 2.0 Consensus size: 102
1087320 CGACGATGAT
1087330 AATTTGAGCAAAAATAAGATTAAAATCTTAAGAAGTTTAAAAGTGAGGTTGGAGTATCCCCTCAG
1 AATTTGAGCAAAAATAAGATTAAAATCTTAAGAAGTTTAAAAGTGAGGTTGGAGTATCCCCTCAG
1087395 AAGAGCAGGGTTTGAATATCCTCGTGAATAAAATTTC
66 AAGAGCAGGGTTTGAATATCCTCGTGAATAAAATTTC
1087432 AATTTGAGCAAAAATAAGATTAAAATCTTAAGAAGTTTAAAAGTGAGGTTGGAGTATCCCCTCAG
1 AATTTGAGCAAAAATAAGATTAAAATCTTAAGAAGTTTAAAAGTGAGGTTGGAGTATCCCCTCAG
*
1087497 AAGAGTAGGGTTTGAATATCCTCGTGAATAAAATTTC
66 AAGAGCAGGGTTTGAATATCCTCGTGAATAAAATTTC
1087534 AATTT
1 AATTT
1087539 TTTTTGTAAA
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 106 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (102 bp):
AATTTGAGCAAAAATAAGATTAAAATCTTAAGAAGTTTAAAAGTGAGGTTGGAGTATCCCCTCAG
AAGAGCAGGGTTTGAATATCCTCGTGAATAAAATTTC
Found at i:1089916 original size:51 final size:52
Alignment explanation
Indices: 1089806--1089905 Score: 148
Period size: 51 Copynumber: 1.9 Consensus size: 52
1089796 AATGTCACGA
*
1089806 ATACATTTAGGTCAAAAACCCAAAATGTATCGATACAATGAAGAATGTAATG
1 ATACATTTAGGTCAAAAACCCAAAATGTATCGATACAATGAAAAATGTAATG
* * * *
1089858 ATACATTTGGGTC-AAAACCTAGAATGTATTGATACAATGAAAAATGTA
1 ATACATTTAGGTCAAAAACCCAAAATGTATCGATACAATGAAAAATGTA
1089906 TCTATACATT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 31 0.72
52 12 0.28
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (52 bp):
ATACATTTAGGTCAAAAACCCAAAATGTATCGATACAATGAAAAATGTAATG
Found at i:1090770 original size:52 final size:52
Alignment explanation
Indices: 1090704--1091059 Score: 214
Period size: 52 Copynumber: 6.9 Consensus size: 52
1090694 ATAAGAGCAT
* * * * *
1090704 CAATGTGCTGATTCACGGCCAGTGACATTAGACTTGAAAATGAGAAGAATGC
1 CAATGTGCTCATTCAAGGCCAGCGACATTAGACTTAAAAATGAGAAAAATGC
* * *
1090756 CAATTTGCTCATTCAAGGCTAGCGACATTTGACTTAAAAATGAGAAAAATGC
1 CAATGTGCTCATTCAAGGCCAGCGACATTAGACTTAAAAATGAGAAAAATGC
* * * * * **
1090808 CAATGTGCTAATTTAAGACTAGCGACATT-GAGC-TAAAAATGATAAAGGTGC
1 CAATGTGCTCATTCAAGGCCAGCGACATTAGA-CTTAAAAATGAGAAAAATGC
* * * * * ** *
1090859 CAATATGCTTATTTAAGGCCAACGATATCGGGCTTAAAAAATGAGAAAAATGC
1 CAATGTGCTCATTCAAGGCCAGCGACATTAGACTT-AAAAATGAGAAAAATGC
* * * * * * * * * * * *
1090912 GAATATGTTGATCCAAGGCTAGCGATATTAGGCTTAAAAATAATAAAAGTGT
1 CAATGTGCTCATTCAAGGCCAGCGACATTAGACTTAAAAATGAGAAAAATGC
* * * * ** * * *
1090964 CAATATGCTAATTCAAGGCTAGCGATATCGGACTTAAAGATGACAAAGATGC
1 CAATGTGCTCATTCAAGGCCAGCGACATTAGACTTAAAAATGAGAAAAATGC
* * * * * * *
1091016 TAATGTACTGATTTAAGGCCAACGACATTGGACTTAGAAA-GAGA
1 CAATGTGCTCATTCAAGGCCAGCGACATTAGACTTAAAAATGAGA
1091060 TGGTTTGAGA
Statistics
Matches: 236, Mismatches: 64, Indels: 9
0.76 0.21 0.03
Matches are distributed among these distances:
51 43 0.18
52 153 0.65
53 40 0.17
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (52 bp):
CAATGTGCTCATTCAAGGCCAGCGACATTAGACTTAAAAATGAGAAAAATGC
Found at i:1090901 original size:104 final size:104
Alignment explanation
Indices: 1090704--1091032 Score: 277
Period size: 104 Copynumber: 3.2 Consensus size: 104
1090694 ATAAGAGCAT
* * * * * * * * * * *
1090704 CAATGTGCTGATTCACGGCCAGTGACATTAGACTTGAAAATGAGAAGAA-TGCCAATTTGCTCAT
1 CAATGTGCTGATTTAAGACTAGCGACATTAGGCTTAAAAATAATAA-AAGTGCCAATATGCTAAT
* * * **
1090768 TCAAGGCTAGCGACATTTGACTTAAAAATGAGAAAAATGC
65 TCAAGGCCAACGATATCGGACTTAAAAATGAGAAAAATGC
* * * *
1090808 CAATGTGCTAATTTAAGACTAGCGACATT-GAGC-TAAAAATGATAAAGGTGCCAATATGCTTAT
1 CAATGTGCTGATTTAAGACTAGCGACATTAG-GCTTAAAAATAATAAAAGTGCCAATATGCTAAT
* *
1090871 TTAAGGCCAACGATATCGGGCTTAAAAAATGAGAAAAATGC
65 TCAAGGCCAACGATATCGGACTT-AAAAATGAGAAAAATGC
* * * ** * * *
1090912 GAATATGTTGATCCAAGGCTAGCGATATTAGGCTTAAAAATAATAAAAGTGTCAATATGCTAATT
1 CAATGTGCTGATTTAAGACTAGCGACATTAGGCTTAAAAATAATAAAAGTGCCAATATGCTAATT
* * * * *
1090977 CAAGGCTAGCGATATCGGACTTAAAGATGACAAAGATGC
66 CAAGGCCAACGATATCGGACTTAAAAATGAGAAAAATGC
* *
1091016 TAATGTACTGATTTAAG
1 CAATGTGCTGATTTAAG
1091033 GCCAACGACA
Statistics
Matches: 176, Mismatches: 44, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
102 1 0.01
103 40 0.23
104 89 0.51
105 46 0.26
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (104 bp):
CAATGTGCTGATTTAAGACTAGCGACATTAGGCTTAAAAATAATAAAAGTGCCAATATGCTAATT
CAAGGCCAACGATATCGGACTTAAAAATGAGAAAAATGC
Found at i:1090982 original size:105 final size:104
Alignment explanation
Indices: 1090753--1091001 Score: 259
Period size: 105 Copynumber: 2.4 Consensus size: 104
1090743 ATGAGAAGAA
* * * * * ** *
1090753 TGCCAATTTGCTCATTCAAGGCTAGCGACATTTGACTT-AAAAATGAGAAAAATGCCAATGTGCT
1 TGCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAAAAATGAGAAAAATGCCAATATGCT
** * *
1090817 AATTTAAGACTAGCGACATTGAGCTAAAAATGATAAAGG
66 AATCCAAGACTAGCGACATTGAGCTAAAAATAATAAAAG
* * * * *
1090856 TGCCAATATGCTTATTTAAGGCCAACGATATCGGGCTTAAAAAATGAGAAAAATGCGAATATGTT
1 TGCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAAAAATGAGAAAAATGCCAATATGCT
* * *
1090921 GATCCAAGGCTAGCGATATT-AGGCTTAAAAATAATAAAAG
66 AATCCAAGACTAGCGACATTGA-GC-TAAAAATAATAAAAG
* * *
1090961 TGTCAATATGCTAATTCAAGGCTAGCGATATCGGACTTAAA
1 TGCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAA
1091002 GATGACAAAG
Statistics
Matches: 118, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
103 30 0.25
104 40 0.34
105 48 0.41
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (104 bp):
TGCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAAAAATGAGAAAAATGCCAATATGCT
AATCCAAGACTAGCGACATTGAGCTAAAAATAATAAAAG
Found at i:1091288 original size:32 final size:32
Alignment explanation
Indices: 1091108--1091323 Score: 147
Period size: 32 Copynumber: 6.8 Consensus size: 32
1091098 GACATTAAGC
* *
1091108 TTAGAAAGAGATGCCACCAACTTGTGTGGGCTT
1 TTAGAAAGAGTTGCCACCGACTTGTGTGGGC-T
* * * *
1091141 TTA-AAAGGGTTGCTATCGACTTATGTGGGCT
1 TTAGAAAGAGTTGCCACCGACTTGTGTGGGCT
* * * * * *
1091172 TTTGAGAGGGTTGCCACTGACATGTGTAGGCTT
1 TTAGAAAGAGTTGCCACCGACTTGTGTGGGC-T
* * *
1091205 TTGGAAA-AGAATGCCACC-A-TT-TATGCGGCT
1 TTAGAAAGAG-TTGCCACCGACTTGTGTG-GGCT
* *
1091235 TT-GAAAGGGTTGCCACTGACTTGTGTGGGCT
1 TTAGAAAGAGTTGCCACCGACTTGTGTGGGCT
* *
1091266 TTAGAAAGAGTTTCCACCGACTTGTCTGGGCT
1 TTAGAAAGAGTTGCCACCGACTTGTGTGGGCT
* * * *
1091298 TTTGAAAAAGATGCCACTGACTTGTG
1 TTAGAAAGAGTTGCCACCGACTTGTG
1091324 CGCTTTAAAA
Statistics
Matches: 138, Mismatches: 36, Indels: 19
0.72 0.19 0.10
Matches are distributed among these distances:
29 10 0.07
30 7 0.05
31 15 0.11
32 91 0.66
33 15 0.11
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (32 bp):
TTAGAAAGAGTTGCCACCGACTTGTGTGGGCT
Found at i:1091336 original size:94 final size:93
Alignment explanation
Indices: 1091112--1091352 Score: 225
Period size: 94 Copynumber: 2.5 Consensus size: 93
1091102 TTAAGCTTAG
* * * *
1091112 AAAGAGATGCCACCAACTTGTGTGGGCTTTTAAAAGGGTTGCTA-TCGACTTATGTGGGCTTTTG
1 AAAGA-ATGCCACC-AC-T-TGTGCGC-TTTAAAAGGGTTGCCACT-GACTTGTGTGGGCTTTAG
* * * * *
1091176 AGAGGGTTGCCACTGACATGTGTAGGCTTTTGGA
60 AAAGAGTTGCCACCGACATGTCTAGGCTTTTGAA
* * *
1091210 AAAGAATGCCACCATTTATGCGGCTTTGAAAGGGTTGCCACTGACTTGTGTGGGCTTTAGAAAGA
1 AAAGAATGCCACCACTTGTGC-GCTTTAAAAGGGTTGCCACTGACTTGTGTGGGCTTTAGAAAGA
* * *
1091275 GTTTCCACCGACTTGTCTGGGCTTTTGAA
65 GTTGCCACCGACATGTCTAGGCTTTTGAA
* * * *
1091304 AAAG-ATGCCACTGACTTGTGCGCTTTAAAAAGGATACCACTGACTTGTG
1 AAAGAATGCCAC-CACTTGTGCGCTTTAAAAGGGTTGCCACTGACTTGTG
1091353 GGTTTTGAAG
Statistics
Matches: 118, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
93 31 0.26
94 69 0.58
95 4 0.03
96 1 0.01
97 8 0.07
98 5 0.04
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (93 bp):
AAAGAATGCCACCACTTGTGCGCTTTAAAAGGGTTGCCACTGACTTGTGTGGGCTTTAGAAAGAG
TTGCCACCGACATGTCTAGGCTTTTGAA
Found at i:1091343 original size:29 final size:28
Alignment explanation
Indices: 1091302--1091572 Score: 109
Period size: 28 Copynumber: 9.2 Consensus size: 28
1091292 TGGGCTTTTG
*
1091302 AAAAA-GATGCCACTGACTTGTGCGCTTT
1 AAAAAGGATACCACTGACTTGTG-GCTTT
*
1091330 AAAAAGGATACCACTGACTTGTGGGTTT
1 AAAAAGGATACCACTGACTTGTGGCTTT
** * * * *
1091358 TGAAGGGATGCCACTAACTTATGGGCTTT
1 AAAAAGGATACCACTGACTTGT-GGCTTT
* *
1091387 -GAAAGGGTACCACTGACTT-TAGGCTTT
1 AAAAAGGATACCACTGACTTGT-GGCTTT
* * *
1091414 AAAAGAAAAAAAGGATGCCACTAACTTATGGGCTTT
1 -------AAAAAGGATACCACTGACTTGT-GGCTTT
* * *
1091450 GAAAAGGGATGCCACTAACTTGTGGGCTTT
1 -AAAAAGGATACCACTGACTTGT-GGCTTT
* * * * *
1091480 -AAAAGGGTGCCACTGAGTTATGGATTTT
1 AAAAAGGATACCACTGACTTGTGG-CTTT
* * * *
1091508 AAAAAGGGTGCCACGGAGTTGTGGACTTT
1 AAAAAGGATACCACTGACTTGTGG-CTTT
* *
1091537 AGAAAAGAGATACCACAGAGTTGTGGACTTT
1 A-AAAAG-GATACCACTGACTTGTGG-CTTT
1091568 AAAAA
1 AAAAA
1091573 AGGGGTGTCA
Statistics
Matches: 194, Mismatches: 34, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
27 9 0.05
28 59 0.30
29 47 0.24
30 36 0.19
31 21 0.11
35 15 0.08
36 7 0.04
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (28 bp):
AAAAAGGATACCACTGACTTGTGGCTTT
Found at i:1091377 original size:28 final size:28
Alignment explanation
Indices: 1091234--1091531 Score: 112
Period size: 28 Copynumber: 9.9 Consensus size: 28
1091224 TTTATGCGGC
*
1091234 TTTGAAAGGGTTGCCACTGACTTGTGTGGGCT
1 TTTGAAA-GGATGCCACTGAC-T-TGTGGG-T
* * * *
1091266 TTAGAAAGAGTTTCCACCGACTTGTCTGGGCT
1 TTTGAAAG-GATGCCACTGACTTG--TGGG-T
* *
1091298 TTTGAAAAAGATGCCACTGACTTGTGCGCT
1 TTTG-AAAGGATGCCACTGACTTGTG-GGT
** *
1091328 TTAAAAAGGATACCACTGACTTGTGGGT
1 TTTGAAAGGATGCCACTGACTTGTGGGT
* * * *
1091356 TTTGAAGGGATGCCACTAACTTATGGGC
1 TTTGAAAGGATGCCACTGACTTGTGGGT
* * *
1091384 TTTGAAAGGGTACCACTGACTT-TAGGCT
1 TTTGAAAGGATGCCACTGACTTGT-GGGT
* * * *
1091412 TTAAAAGAAAAAAAGGATGCCACTAACTTATGGGC
1 TT---TG----AAAGGATGCCACTGACTTGTGGGT
* *
1091447 TTTGAAAAGGGATGCCACTAACTTGTGGGC
1 TTTG-AAA-GGATGCCACTGACTTGTGGGT
* * * * *
1091477 TTTAAAAGGGTGCCACTGAGTTATGGAT
1 TTTGAAAGGATGCCACTGACTTGTGGGT
* * * *
1091505 TTTAAAAAGGGTGCCACGGAGTTGTGG
1 TTT-GAAAGGATGCCACTGACTTGTGG
1091532 ACTTTAGAAA
Statistics
Matches: 206, Mismatches: 44, Indels: 35
0.72 0.15 0.12
Matches are distributed among these distances:
27 1 0.00
28 63 0.31
29 47 0.23
30 30 0.15
31 4 0.02
32 38 0.18
33 3 0.01
35 19 0.09
36 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (28 bp):
TTTGAAAGGATGCCACTGACTTGTGGGT
Found at i:1091561 original size:31 final size:30
Alignment explanation
Indices: 1091446--1091954 Score: 376
Period size: 29 Copynumber: 17.3 Consensus size: 30
1091436 AACTTATGGG
* *
1091446 CTTT-GAAAAGGGATGCCACTA-ACTTGTGGG
1 CTTTAGAAAAGGG-TGCCAC-AGAGTTGTGGA
* *
1091476 CTTT--AAAAGGGTGCCACTGAGTTATGGA
1 CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
* *
1091504 TTTTA-AAAAGGGTGCCACGGAGTTGTGGA
1 CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
* *
1091533 CTTTAGAAAAGAGATACCACAGAGTTGTGGA
1 CTTTAGAAAAG-GGTGCCACAGAGTTGTGGA
* * *
1091564 CTTTAAAAAAGGGGTGTCATAGAGTTGTGGA
1 CTTTAGAAAA-GGGTGCCACAGAGTTGTGGA
* *
1091595 CTTT-GAAAAGAGTGCCACAGAGTTATGGA
1 CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
* * *
1091624 CTTTA-AAAA-GGTGCCATAAAGTTATGGA
1 CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
* **
1091652 CTTTA-AAAA-GGTGTCACTA-AGTCATGGA
1 CTTTAGAAAAGGGTGCCAC-AGAGTTGTGGA
* ** * * *
1091680 CTTTTAAAAAAGAATTCCATAGAGTTTTGGA
1 C-TTTAGAAAAGGGTGCCACAGAGTTGTGGA
* *
1091711 CTTT--AAAAGGGTGCCACGGAGTTGTGTA
1 CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
* * *
1091739 CTTTAAAAAAGGGTGCCACAGATTTGTGAA
1 CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
* **
1091769 ATTT-GAAAAGGGTGCCAC-GAAGTTGTAAA
1 CTTTAGAAAAGGGTGCCACAG-AGTTGTGGA
* * *
1091798 CTTTTGAAAAAGGGTACCACGGAGTTGTGGA
1 CTTTAG-AAAAGGGTGCCACAGAGTTGTGGA
* *
1091829 CTTTTAGAAGAGGGTG-CATAGAGTTGT-GA
1 C-TTTAGAAAAGGGTGCCACAGAGTTGTGGA
* *
1091858 CTTTTGAAAAAGGGTGCCACGGAGTTGTGGA
1 CTTTAG-AAAAGGGTGCCACAGAGTTGTGGA
* *
1091889 CTTTA-AAAAGGGTGCCATAAAGTTGTGGA
1 CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
* *
1091918 CTTTA-AAAAAGGTGCCACTA-AGTTGTGAA
1 CTTTAGAAAAGGGTGCCAC-AGAGTTGTGGA
1091947 CTTT-GAAA
1 CTTTAGAAA
1091955 GTTACTTTAC
Statistics
Matches: 388, Mismatches: 68, Indels: 47
0.77 0.14 0.09
Matches are distributed among these distances:
28 81 0.21
29 148 0.38
30 65 0.17
31 88 0.23
32 6 0.02
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (30 bp):
CTTTAGAAAAGGGTGCCACAGAGTTGTGGA
Found at i:1091614 original size:60 final size:59
Alignment explanation
Indices: 1091451--1091954 Score: 422
Period size: 60 Copynumber: 8.5 Consensus size: 59
1091441 ATGGGCTTTG
* * * * *
1091451 AAAAGGGATGCCACTA-ACTTGTGGGCTTT-AAAAGGGTGCCACTGAGTTATGGA-TTTTA
1 AAAAGGG-TGCCAC-AGAGTTGTGGACTTTGAAAAGGGTGCCACAGAGTTGTGGACTTTAA
* * *
1091509 AAAAGGGTGCCACGGAGTTGTGGACTTTAGAAAAGAGATACCACAGAGTTGTGGACTTTAA
1 AAAAGGGTGCCACAGAGTTGTGGACTTT-GAAAAG-GGTGCCACAGAGTTGTGGACTTTAA
* * * *
1091570 AAAAGGGGTGTCATAGAGTTGTGGACTTTGAAAAGAGTGCCACAGAGTTATGGACTTT-A
1 AAAA-GGGTGCCACAGAGTTGTGGACTTTGAAAAGGGTGCCACAGAGTTGTGGACTTTAA
* * * * * **
1091629 AAAA-GGTGCCATAAAGTTATGGACTTT-AAAAAGGTGTCACTA-AGTCATGGACTTTTAA
1 AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGGGTGCCAC-AGAGTTGTGGAC-TTTAA
** * * * * *
1091687 AAAAGAATTCCATAGAGTTTTGGACTTT-AAAAGGGTGCCACGGAGTTGTGTACTTTAA
1 AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGGGTGCCACAGAGTTGTGGACTTTAA
* * * ** *
1091745 AAAAGGGTGCCACAGATTTGTGAAATTTGAAAAGGGTGCCAC-GAAGTTGTAAACTTTTGA
1 AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGGGTGCCACAG-AGTTGTGGAC-TTTAA
* * * * *
1091805 AAAAGGGTACCACGGAGTTGTGGACTTTTAGAAGAGGGTG-CATAGAGTTGT-GACTTTTGA
1 AAAAGGGTGCCACAGAGTTGTGGAC-TTT-GAAAAGGGTGCCACAGAGTTGTGGAC-TTTAA
* * * *
1091865 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAAGGGTGCCATAAAGTTGTGGACTTTAA
1 AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGGGTGCCACAGAGTTGTGGACTTTAA
*
1091924 AAAA-GGTGCCACTA-AGTTGTGAACTTTGAAA
1 AAAAGGGTGCCAC-AGAGTTGTGGACTTTGAAA
1091955 GTTACTTTAC
Statistics
Matches: 366, Mismatches: 60, Indels: 40
0.79 0.13 0.09
Matches are distributed among these distances:
56 19 0.05
57 41 0.11
58 69 0.19
59 88 0.24
60 93 0.25
61 25 0.07
62 31 0.08
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (59 bp):
AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGGGTGCCACAGAGTTGTGGACTTTAA
Found at i:1097294 original size:13 final size:14
Alignment explanation
Indices: 1097265--1097301 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
1097255 AACGGGATTG
1097265 TTTTTACCACCATTT
1 TTTTTACCACCA-TT
1097280 TTTTTACCACC-TT
1 TTTTTACCACCATT
1097293 TTTTTACCA
1 TTTTTACCA
1097302 TTCATGCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.50
15 11 0.50
ACGTcount: A:0.19, C:0.27, G:0.00, T:0.54
Consensus pattern (14 bp):
TTTTTACCACCATT
Found at i:1097863 original size:157 final size:155
Alignment explanation
Indices: 1097329--1097869 Score: 391
Period size: 157 Copynumber: 3.4 Consensus size: 155
1097319 TTTTTTTCAA
* * * * * * ** **
1097329 GATTAGGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTCACAAG
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTACTTTTGCAAG
* ** ** * *
1097394 AAAGGCATT-TTCAGACTAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAATGTGACAAACACGGA
66 AAATG-ATTCTTCCCACTAA-TTTT-TAAAGTCTAAGTTCATGCCTTAAAAGTGACAAACATGGA
* * * * *
1097458 TTCTAATAATGATCTTTAATCACTATAT
128 TTCTAGTAATGATCTTCAATCATTTTGT
* * * * * *
1097486 GATTAGGCACGATAAACACATTTTTCC-CATTTGGATAAATGATATTTATGATTTTCTTTTGCAT
1 GATTAGGCACTATAAACACA-TTCTCCTCATTAGGATAAAAGATATTGATGATTTACTTTTGCA-
* * * * ** * * *
1097550 GGAAATTGTTTCTTTGCC-CTAATTTCCTTAAAATAAAAATTCATCCCTTAAATA-TGACAAGCA
64 AGAAA-TGATTC-TTCCCACTAATTT--TTAAAGTCTAAGTTCATGCCTTAAA-AGTGACAAACA
* *
1097613 TCGATTCTCGTAAT-AGTCTTCAAT-ATTTTCAG-
124 TGGATTCTAGTAATGA-TCTTCAATCATTTT--GT
* * * * *
1097645 GGTTGGGAACTA-AGAACACATTC-CCTTCATTAGGATACAAGATATTGATGCTTTGAC-TTTGC
1 GATTAGGCACTATA-AACACATTCTCC-TCATTAGGATAAAAGATATTGATGATTT-ACTTTTGC
* *
1097707 AAGAAATGAATTCTTCCCACCAATTATTTAAAGTCTAAGTTCATGCCTCAAAAGTGACAAACATG
63 AAGAAATG-ATTCTTCCCACTAATT-TTTAAAGTCTAAGTTCATGCCTTAAAAGTGACAAACATG
*
1097772 GATTCTAGTAATGATCTTCATTCATTTTGT
126 GATTCTAGTAATGATCTTCAATCATTTTGT
* * * *
1097802 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTAACGATTTCCTTTTGCATG
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTACTTTTGCAAG
1097867 AAA
66 AAA
1097870 ATTTTTCTTC
Statistics
Matches: 290, Mismatches: 69, Indels: 50
0.71 0.17 0.12
Matches are distributed among these distances:
156 3 0.01
157 153 0.53
158 40 0.14
159 90 0.31
160 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (155 bp):
GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTACTTTTGCAAG
AAATGATTCTTCCCACTAATTTTTAAAGTCTAAGTTCATGCCTTAAAAGTGACAAACATGGATTC
TAGTAATGATCTTCAATCATTTTGT
Found at i:1098476 original size:475 final size:473
Alignment explanation
Indices: 1097717--1098850 Score: 1465
Period size: 475 Copynumber: 2.4 Consensus size: 473
1097707 AAGAAATGAA
* * * *
1097717 TTCTTCCCACCAATTATT-TAAAGTCTAAGTTCATGCCTCAAAAGTGACAAACATGGATTCTAGT
1 TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * *
1097781 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATA
66 AATGATCTTCTTTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * * *
1097846 TTAACGATTTCCTTTTGCATGAAAAT-TTTTCTTCGCCCTATTTTTCATAAACTAAAAATTCATC
131 TTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTG-CCTATTTTTCATAAAATAAAAATTCATC
* * ** *
1097910 CCTTAAATATGATAAGCATTGATTCTCGTAACAGTCTCTATTCCTTTCAAGATTGGGAACCAAGA
195 CCCTAAATATGACAAGCATCAATTCTCATAACAGTCTCTATTCCTTTCAAGATTGGGAACCAAGA
* * *
1097975 ACAAATTCCCTTCTTTATGGTACATGACATTGATGCTTTGGTGTTGAAAGAAAAGCTTTTCTTTC
260 ACAAATTCCCTTCCTTATGGTACATGACATTGATGCTTTGGGGTCGAAAGAAAAGCTTTTCTTTC
* * * * * * **
1098040 CATCGTTATTGATAGAATCAACGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATT
325 AAACATTATTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-AGC
* * * * *
1098105 CCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGACGC
389 CCCATTCTTTTCAGGA-TACGCACCATAAACATAGTCTTCTCATAACGATAAAACATATTGACGC
1098170 TTTAGTGTTACA-A-GAAAAGCT
453 TTT-G-GTTACATAGGAAAAGCT
* * * *
1098191 TTCTTCTCACCAATTTTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTTTAGT
1 TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
*
1098256 AATGATCTTCTTTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATT
66 AATGATCTTCTTTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * * *
1098321 TTGATGGTTTTCTTTCGCATGGAAATCTTTTATTTGCCTTTTTTTCTTTAAAATCAAAATTCATC
131 TTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTATTTTTC-ATAAAATAAAAATTCATC
** *
1098386 CCCTAAATATTG-CAAGCATCAATTCTCATAGTAGTCTCTATTCTTTTCAAGATTGGGAACC-AG
195 CCCTAAATA-TGACAAGCATCAATTCTCATAACAGTCTCTATTCCTTTCAAGATTGGGAACCAAG
* * **
1098449 AACACATTGCCTTCCTTA-GGATACATGACATTGATGCTTTGGGGTCGCTAGAAAAGCTTTTCTT
259 AACAAATTCCCTTCCTTATGG-TACATGACATTGATGCTTTGGGGTCGAAAGAAAAGCTTTTCTT
* * *
1098513 TCAAACATTTTTAATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATACTAG
323 TCAAACATTATTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAG
** * * * * *
1098578 CCCCATTCTTTTCAGGATACGCACTGTAAACATAGTTTTCTTATTACGATAAAAGATATTGATGC
388 CCCCATTCTTTTCAGGATACGCACCATAAACATAGTCTTCTCATAACGATAAAACATATTGACGC
* *
1098643 TTTGGTTTCATAGGAAAGGCT
453 TTTGGTTACATAGGAAAAGCT
* *
1098664 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGT
1 TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1098729 AATGATCTTATTT-ATTTTGTGATTAAACACTTTAAATACATTCTCCTCATTAGGATAAATGATA
66 AATGATCTTCTTTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * *
1098793 TTGATGGCTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATAAAA
131 TTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTG-CCTATTTTTCATAAAATAAAA
1098851 GTTTGTCCCT
Statistics
Matches: 569, Mismatches: 83, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
471 5 0.01
472 91 0.16
473 125 0.22
474 34 0.06
475 240 0.42
476 72 0.13
477 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (473 bp):
TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
AATGATCTTCTTTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTATTTTTCATAAAATAAAAATTCATCC
CCTAAATATGACAAGCATCAATTCTCATAACAGTCTCTATTCCTTTCAAGATTGGGAACCAAGAA
CAAATTCCCTTCCTTATGGTACATGACATTGATGCTTTGGGGTCGAAAGAAAAGCTTTTCTTTCA
AACATTATTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAGCCC
CATTCTTTTCAGGATACGCACCATAAACATAGTCTTCTCATAACGATAAAACATATTGACGCTTT
GGTTACATAGGAAAAGCT
Found at i:1101505 original size:159 final size:157
Alignment explanation
Indices: 1101330--1101990 Score: 434
Period size: 159 Copynumber: 4.2 Consensus size: 157
1101320 TATGCTTATG
* * *
1101330 GTGCCTAATCTTGAAAAGAATGGGGATAAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAA
1 GTGCCCAATCTTGAAAAGAATGGAGATAAGTATGA-TATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
1101395 ATTTTG-TTTCTGTCAAAAACGATGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCGTCAATGTC
65 ACTTTGATTT-TGTCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGTC
*
1101459 ATGTATCCTAATGAAGGGAATGTGTTCTTG
129 ATGTATCCTAATGAAGGGAATGTGTT-TTA
* * * * *
1101489 GTTCCCAATCTTGAAAAGAATGGAGACT--GTTATGAGAATCGATGCTTGTCTTTTTTAA-AGGA
1 GTGCCCAATCTTGAAAAGAATGGAGA-TAAG-TATGATATTC-ATGTTTGTCTTATTTAAGA-GA
** **** * * * * ** *
1101551 TGAACTTTGATTTTAAGGAAAATAGA-GCAAAGAAAAGATTTTCCTGCAAAAGGAAATCATCAAT
62 CAAACTTTGATTTTGTCAAAAAT-GATGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAAT
* * * *
1101615 TTCATTTATCCTAATAAAGAGAATGTGTTTATA
126 GTCATGTATCCTAATGAAGGGAATGTGTTT-TA
* ** * * * * * * *
1101648 GTGCCTAA-CTACAAAGTGAATGAAGATCATTACTAGA-ATCCATGTTTGTCTCAATTGAAGA-A
1 GTGCCCAATCTTGAAA-AGAATGGAGATAAGTA-T-GATATTCATGTTTGTCT-TATTTAAGAGA
* * * * ** * *
1101710 CAAA-TTTAGATATT-ACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGTGAAACTAAAGCATCAA
62 CAAACTTT-GATTTTGTCAAAAA-TGATGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAA
* * * * * *
1101772 TATCATCTATCCTAATG--GGAAGACTATGCTTATG
125 TGTCATGTATCCTAATGAAGG--GAATGTG-TTTTA
* * *
1101806 GAGCCTAATCTTGAAAAGAATGGGGA-ATAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
1 GTGCCCAATCTTGAAAAGAATGGAGATA-AGTATGA-TATTCATGTTTGTCTTATTTAAGAGACA
* * * * * *
1101870 GACTTTG-TTTCTTTAAAAAATGGTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
64 AACTTTGATTT-TGTCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGT
*
1101934 CATGTATCCTAATGAATGGAATGTGTTCTTA
128 CATGTATCCTAATGAAGGGAATGTGTT-TTA
*
1101965 GTTCCCAATCTTGAAAAGAATGGAGA
1 GTGCCCAATCTTGAAAAGAATGGAGA
1101991 ATGTTATAAG
Statistics
Matches: 371, Mismatches: 99, Indels: 64
0.69 0.19 0.12
Matches are distributed among these distances:
156 3 0.01
157 10 0.03
158 110 0.30
159 231 0.62
160 13 0.04
161 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (157 bp):
GTGCCCAATCTTGAAAAGAATGGAGATAAGTATGATATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTTTGTCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGTCAT
GTATCCTAATGAAGGGAATGTGTTTTA
Found at i:1101971 original size:476 final size:474
Alignment explanation
Indices: 1100444--1102067 Score: 2099
Period size: 475 Copynumber: 3.4 Consensus size: 474
1100434 TTGAGGGACG
* *** * *
1100444 AACTTTGATTCTATCAAAAGTAGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
1 AACTTTGTTTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * * * *
1100509 AAGTACCCTAATGAAGGGAATGT-TCTTTTGGCTCCCAATCTAGAAAAAAAAAT-TAGACTATTA
66 ATGTATCCTAATGAAGGGAATGTGT-TCTTGGTTCCCAATCTTG--AAAAGAATGGAGACTGTTA
* * * * *
1100572 CAAGAATTGATGCTTGTCTTTCTTATGAGATGAACTTTGATTTTAAGGAAAATA-AGGTAAAGAA
128 CAAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGA-GCAAAGAA
* * * * *
1100636 AAGATTTT-CAGCAAAAGAAAATCATCAGTATCATTTATCCTAATAAGGAAAATGTGTTTATAGT
192 AAGATTTTCCTGCAAAAGAAAATCATCAATTTCATTTATCCTAATAAAGAGAATGTGTTTATAGT
* * * * *
1100700 GCTTAATCACAAAATGAATGAAGATCAGTT-CTAAAATCCGTGTTTGTCTC-ATTTAGGGCACAA
257 GCCTAAT-ACAAAGTGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCAATTGA-GGCACAA
* * * * *
1100763 ACTTAGACT-TTACAAAAATTGGTGGGAAG-AAGCGTCTCTTACGAAACCGAAGCATCAATATCT
319 A-TTAGA-TATTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCA
* ** * * * * *
1100826 TATATCCTTATGTAAAGACTATGTTTATGGTGCCTAATCCAT-AAAAGAAAT-GCGATTAGCATG
382 TATATCCTAATGGGAAGACTATGCTTATGGTGCCTAAT-CTTGAAAAG-AATGGGGAATAGTATG
* *
1100889 AATATTCATGTTTGTCTTATTTAAAAGACA
445 ACTATTCATGTTTGTCTTATTTAAGAGACA
* * ** *
1100919 AACTTTGATAT-TATCAAAAACGGAGGAAAGAAAAGCTTTTCTTATGACACTAAAGCA-CTAATG
1 AACTTTG-TTTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC-AATG
* * *
1100982 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATCGAGACTGTTGC
64 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * **
1101047 GAGAATCAATGCTTGTCTTAATTAAGGGATGAA-TTATGATTTTAAGGAAAATAGAGCAAAGAAA
129 AAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTT-TGATTTTAAGGAAAATAGAGCAAAGAAA
* * *
1101111 AGATTTTCATGCAAAAGAAAATCATCAATTTCATTTA-CCTTAATAAAAAGAATGTATTTATAGT
193 AGATTTTCCTGCAAAAGAAAATCATCAATTTCATTTATCC-TAATAAAGAGAATGTGTTTATAGT
* *
1101175 GCCTGATTACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGCGCAAAT
257 GCCT-AATACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGCACAAAT
* * ** * *
1101240 TAGACATTACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAAGAATATCGTTTA
321 TAGATATTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATATA
1101305 TCCTAATGGGAAGACTATGCTTATGGTGCCTAATCTTGAAAAGAATGGGG-ATAAGTATGACTAT
386 TCCTAATGGGAAGACTATGCTTATGGTGCCTAATCTTGAAAAGAATGGGGAAT-AGTATGACTAT
*
1101369 TCATGTTTGCCTTATTTAAGAGACA
450 TCATGTTTGTCTTATTTAAGAGACA
* * * * *
1101394 AATTTTGTTTCTGTCAAAAACGATGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCGTCAATGTC
1 AACTTTGTTTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
**
1101459 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
66 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACAA
*
1101524 GAATCGATGCTTGTCTTTTTTAAAGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGA
131 GAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGA
*
1101589 TTTTCCTGCAAAAGGAAATCATCAATTTCATTTATCCTAATAAAGAGAATGTGTTTATAGTGCCT
196 TTTTCCTGCAAAAGAAAATCATCAATTTCATTTATCCTAATAAAGAGAATGTGTTTATAGTGCCT
* *
1101654 AACTACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAAGAACAAATTTAG
261 AA-TACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGCACAAA-TTAG
* * *
1101719 ATATTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATCTATCC
324 ATATTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATATATCC
*
1101784 TAATGGGAAGACTATGCTTATGGAGCCTAATCTTGAAAAGAATGGGGAATAGTATGACTATTCAT
389 TAATGGGAAGACTATGCTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGACTATTCAT
1101849 GTTTGTCTTATTTAAGAGACA
454 GTTTGTCTTATTTAAGAGACA
* * * * * *
1101870 GACTTTGTTTCTTTAAAAAATGGTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGTTTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * *
1101935 ATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGAATGTTATAA
66 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACAA
* * * *
1102000 GAATCGATGCTTGCCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAGAAGA
131 GAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGA
1102065 TTT
196 TTT
1102068 GCTTATGAGA
Statistics
Matches: 1012, Mismatches: 114, Indels: 45
0.86 0.10 0.04
Matches are distributed among these distances:
473 9 0.01
474 104 0.10
475 561 0.55
476 336 0.33
477 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
AACTTTGTTTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACAA
GAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGA
TTTTCCTGCAAAAGAAAATCATCAATTTCATTTATCCTAATAAAGAGAATGTGTTTATAGTGCCT
AATACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGCACAAATTAGAT
ATTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATATATCCTA
ATGGGAAGACTATGCTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGT
TTGTCTTATTTAAGAGACA
Found at i:1102049 original size:159 final size:157
Alignment explanation
Indices: 1101417--1102042 Score: 438
Period size: 159 Copynumber: 4.0 Consensus size: 157
1101407 TCAAAAACGA
* *
1101417 TGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAGGGAATGT
1 TGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGT
* * * * *
1101482 GTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTATGAGAATCGATGCTTGTCTTTTTTA
65 GTTCTTAGTGCCCAATCTTGAAAAGAATGGAGAATAGTTATAAGAATCGATGCTTGTCTTATTTA
* * *
1101546 AAGGATGAACTTTGATTTTAAGGAAAATAG
130 AGGGATCAACTTTGATTTTAA--AAAATGG
* * * * * ** * * * *
1101576 AGCAAAGAAAAGATTTTCCTGCAAAAGGAAATCATCAATTTCATTTATCCTAATAAAGAGAATGT
1 TGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAG-GAATGT
* ** * * * * *
1101641 GTT-TATAGTGCCTAA-CTACAAAGTGAATGAAG-ATCA-TTACT-AGAATCCATGTTTGTCTCA
65 GTTCT-TAGTGCCCAATCTTGAAA-AGAATGGAGAAT-AGTTA-TAAGAATCGATGCTTGTCT-T
* * * *
1101701 ATTGAA--GAACAAATTTAGATATTACAAAAATTGG
125 ATTTAAGGGATCAACTTT-GATTTTA-AAAAA-TGG
* ** * * * *
1101735 TGGGAAG-AAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATCTATCCTAATG--GGAA-GAC
1 TGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAATG--
* * * * * ** * *
1101796 TATGCTTATGGAGCCTAATCTTGAAAAGAATGGGGAATAG-TATGACTATTC-ATGTTTGTCTTA
64 TGTTCTTA--GTGCCCAATCTTGAAAAGAATGGAGAATAGTTAT-AAGAATCGATGCTTGTCTTA
* *
1101859 TTTAAGAGA-CAGACTTTGTTTCTTTAAAAAATGG
126 TTTAAGGGATCA-ACTTTG-AT-TTTAAAAAATGG
* *
1101893 TGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGT
1 TGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGT
* * *
1101958 GTTCTTAGTTCCCAATCTTGAAAAGAATGGAGAAT-GTTATAAGAATCGATGCTTGCCTTTTTTA
65 GTTCTTAGTGCCCAATCTTGAAAAGAATGGAGAATAGTTATAAGAATCGATGCTTGTCTTATTTA
*
1102022 AGGGATGAACTTTGATTTTAA
130 AGGGATCAACTTTGATTTTAA
1102043 GGAAAATAGG
Statistics
Matches: 350, Mismatches: 84, Indels: 68
0.70 0.17 0.14
Matches are distributed among these distances:
154 1 0.00
155 3 0.01
156 5 0.01
157 12 0.03
158 99 0.28
159 209 0.60
160 10 0.03
161 6 0.02
162 4 0.01
163 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (157 bp):
TGGAAAGAAAAGTTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAATGTG
TTCTTAGTGCCCAATCTTGAAAAGAATGGAGAATAGTTATAAGAATCGATGCTTGTCTTATTTAA
GGGATCAACTTTGATTTTAAAAAATGG
Found at i:1102354 original size:287 final size:286
Alignment explanation
Indices: 1101790--1102354 Score: 767
Period size: 287 Copynumber: 2.0 Consensus size: 286
1101780 ATCCTAATGG
* * * *
1101790 GAAGACTATGCTTATGGAGCCTAATCTTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGT
1 GAAGACTATGCTTATAGAGCCTAATCCTGAAAAAAATAGGGAATAGTATGACTATTCATGTTTGT
* * * ** * * *
1101855 CTTATTTAAGAGACAGACTTTGTTTCTTTAAAAAATGGTGGAAAGGAAAGTTTTTCTTGCGACAC
66 CTTATTTAAGAGACAAACTTTGTATCTATAAAAAACAGAGGAAAGAAAAGCTTTTCTTGCGACAC
* * *
1101920 CAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
131 CAAAGCATCAATGTCATGTATCCAAATGAATGGAATGTCTTCTTAGTTACCAATCTTGAAAAGAA
* * * * *
1101985 TGGAGAATGTTATAAGAATCGATGCTTGCCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAAT
196 TGGAGAATATTATAAGAATCAATGCTTGCCTTATTTAAAGGATAAACTTTGATTTTAAGGAAAAT
* *
1102050 AGGGTAAAGAGAAGATTTGCTTATGA
261 AGGGCAAAGAAAAGATTTGCTTATGA
* * *
1102076 GAAGACTATGTTTATAGTGCCTAATCCTGAAAAAAAATAGGGATTAGTATGACTATTCATGTTTG
1 GAAGACTATGCTTATAGAGCCTAATCCTG-AAAAAAATAGGGAATAGTATGACTATTCATGTTTG
* * *
1102141 TCTTATTTAAGGGACAAACTTTGATAT-TATCAAAAACAGAGGAAAGAAAAGCTTTTCTTGTGAC
65 TCTTATTTAAGAGACAAACTTTG-TATCTATAAAAAACAGAGGAAAGAAAAGCTTTTCTTGCGAC
* *
1102205 ACCAAAGCATCAATGTCATGTATCCAAATGAA-GAGAATGTCTTTTTGGTTACCAATCTTGAAAA
129 ACCAAAGCATCAATGTCATGTATCCAAATGAATG-GAATGTCTTCTTAGTTACCAATCTTGAAAA
* * * *
1102269 TAATGGAGACTATT-TAGAGAATCAATGCTTGTCTTATTTAAAGGATAAATTTTGATTTTAAGGA
193 GAATGGAGAATATTATA-AGAATCAATGCTTGCCTTATTTAAAGGATAAACTTTGATTTTAAGGA
1102333 AAATAGGGCAAAGAAAAGATTT
257 AAATAGGGCAAAGAAAAGATTT
1102355 CCATGCAAAA
Statistics
Matches: 241, Mismatches: 34, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
286 28 0.12
287 211 0.88
288 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (286 bp):
GAAGACTATGCTTATAGAGCCTAATCCTGAAAAAAATAGGGAATAGTATGACTATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGTATCTATAAAAAACAGAGGAAAGAAAAGCTTTTCTTGCGACAC
CAAAGCATCAATGTCATGTATCCAAATGAATGGAATGTCTTCTTAGTTACCAATCTTGAAAAGAA
TGGAGAATATTATAAGAATCAATGCTTGCCTTATTTAAAGGATAAACTTTGATTTTAAGGAAAAT
AGGGCAAAGAAAAGATTTGCTTATGA
Found at i:1102643 original size:20 final size:19
Alignment explanation
Indices: 1102615--1102689 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
1102605 TCATACCCTG
*
1102615 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTAT-A
* *
1102635 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTAT-A
*
1102655 ATGTATCGATATATTCTATA
1 ATGTATCGATACATT-TATA
1102675 ATGTATCGATACATT
1 ATGTATCGATACATT
1102690 ATGTCTTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 43 0.93
21 3 0.07
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (19 bp):
ATGTATCGATACATTTATA
Found at i:1102682 original size:40 final size:39
Alignment explanation
Indices: 1102615--1102692 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 39
1102605 TCATACCCTG
*
1102615 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTTATCAATATATCGATACAT-TATGA
* *
1102655 ATGTATCGATATATTCTAT-AATGTATCGATACATTATG
1 ATGTATCGATACATT-TATCAATATATCGATACATTATG
1102693 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 4 0.12
40 28 0.82
41 2 0.06
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (39 bp):
ATGTATCGATACATTTATCAATATATCGATACATTATGA
Found at i:1103318 original size:17 final size:17
Alignment explanation
Indices: 1103296--1103330 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1103286 CAAAGCATCA
1103296 GTATTGTGTATCGTAGT
1 GTATTGTGTATCGTAGT
1103313 GTATTGTGTATCGTAGT
1 GTATTGTGTATCGTAGT
1103330 G
1 G
1103331 AAGAGAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.31, T:0.46
Consensus pattern (17 bp):
GTATTGTGTATCGTAGT
Found at i:1106380 original size:476 final size:472
Alignment explanation
Indices: 1105425--1107621 Score: 2374
Period size: 476 Copynumber: 4.7 Consensus size: 472
1105415 ATGTTTATCC
* * *
1105425 CAATCTTGAAAAGAATGGAGAC-AGTTAGGAGAATC---G-TTG-CTT-GTTAAGGGATGAATTT
1 CAATCTTGAAAAGAATGGAGACTA-TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTT
* *
1105483 TGATTTTTAGGAAAATAGGGCAAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
65 TGATTTTAAGGAAAATAGGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
* *
1105548 ATCCTAGTGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-GTAA
129 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG-AA
* * * * *
1105612 TCTATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTAG-GGGAAGAAAGCCTTT
193 TCAATGTTTGTCT-ATTAGAGGCACGAACTTAGACTTAACAAAAATTAGTAGGAAGAAAGCCTTT
* * * * * *
1105676 CTTCCGAAACCAAAGCATCAACATCTTGCATCCTTATGAGAAGACTAAGTTTATGGTGTCTAATT
257 CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATT
* * ** *
1105741 CTGAAATGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAATAGAAAAACTTTGATTC
322 -TGAAATGAATGGGGATTAGTTTGAGTATTCATGTTTGTATTATTTAAGAGAAAAACTTTGATTC
* * * *
1105806 TATCAAAAACGGTTGGAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTTTCCTAA
386 TATAAAAAACGGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCACCAATGTCATGTATCCTAA
*
1105871 CG-AAGAGAATGTGTTTTCGGTGCA
451 CGAAAG-GAATGTGTTTT-GGT-TA
* *
1105895 CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCC-TACTTTATGGGATAAACTT
1 CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTA-TTTAAGGGATGAACTT
* * *
1105959 TGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCTTGCAAAAGAAAATCATCAATATCATTTA
65 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * ** * * * * *
1106024 ACCTAAAGACAAGCATGTGTTTATAGTGCCTAATTATAAAATGAATAAAGATCATTGCTAGAATC
130 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
1106089 AATGTTTGACATATTAGAGGCATGAACTTAGACTTAACAAAAATTAGAAGCAAGAAAGCCTTTCT
195 AATGTTTGTC-TATTAGAGGCACGAACTTAGACTTAACAAAAATTAGTAGGAAGAAAGCCTTTCT
* *
1106154 TGCGAAACCAACGCATCAATATCGTGTATCGTTATGAGAAGACTATGTTTATGGTGCCTAATCTT
259 TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-TT
* * *
1106219 GAAACGAATGGGGATTAGTTTGAGTATTCATGTTTGTATTACTTAAGAGAAAAATTTTGATTCTA
323 GAAATGAATGGGGATTAGTTTGAGTATTCATGTTTGTATTATTTAAGAGAAAAACTTTGATTCTA
* * * * **
1106284 TAAAAAATGGTTGGAGGAAAAGCTTTTCTTGCGGCACTAAAGCACCAATGTCATGTATCCTATTG
388 TAAAAAACGGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCACCAATGTCATGTATCCTAACG
*
1106349 AAAGGAATGTGATTTTGGTTCC
453 AAAGGAATGTG-TTTTGGTT-A
* * * * * * * *
1106371 CACTCTTGAAAAGAATGAACACTATTACGAGAATCAATGCTTACCTTATTTACGAGATTAACATT
1 CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTT
1106436 GATTTTAAGGAAAATAGGGCAAAG--AA-A-----AT-C---AG--------CAATATCATTTAT
66 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
** *
1106481 CCTAATGAGGAGAATGCATTTATAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCC
131 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT-C
* * * **
1106546 AA-GTTTGTGTTATTTA-AGGCACGAACTTAGACTTAGCAAAAATTAGTAGCAAGAAAGTGTTTC
195 AATGTTTGT-CTA-TTAGAGGCACGAACTTAGACTTAACAAAAATTAGTAGGAAGAAAGCCTTTC
** * ** * * * * *
1106609 TTAAGAAACCGAAGTGTCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTGATCC
258 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-T
* * * * * *
1106674 TAAAAAGAATGGGAATTA-TTATGACTATTCATGTATG-ACTTATTTAAGAGACAAACTTT-ACT
322 TGAAATGAATGGGGATTAGTT-TGAGTATTCATGTTTGTA-TTATTTAAGAGAAAAACTTTGA-T
** * * * *
1106736 TCTACCAAAAATGG-TGGAAAGAAAAACTTTTCTTACGACACAAAAGCATCAATGTCATGTATCC
384 TCTATAAAAAACGGTTGG-AAGAAAAGCTTTTCTTACGACACTAAAGCACCAATGTCATGTATCC
* * *
1106800 TAATGAAAGGAAAGTGTTCTTGGTGTC
448 TAACGAAAGGAATGTGTT-TTGGT-TA
** * * *** *
1106827 CAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTGTCATAAAGAAGGGATGAATTTT
1 CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTT
* * * * * *
1106892 GATTTTAAGGAAAATAAGGC-AA-AACAGATTTCCATGCAATAGAAAATCGTCAATAACATTTCT
66 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * *
1106955 CCTAATGAGGAGAATGTGTTTATAGTTCCTAATTACAAAACGAATGAAGATCATTCCTAGAATTC
131 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TC
* * * * * * *
1107020 -ATATTTGACACATTAGAGAG-ACGAACTTAGGCTTAGCAAAAATTAGTAGGAAAAAAACCTTTC
195 AATGTTTGTC-TATTAGAG-GCACGAACTTAGACTTAACAAAAATTAGTAGGAAGAAAGCCTTTC
* * * *
1107083 TTGTGAAACCAAAGCGTCAATATCGTGTATCTTTATGAGAAGACTATGTTTATGATGCCTAATTT
258 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATTT
*
1107148 GGAAATGAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCT
323 -GAAATGAATGGGGATTAGTTTGAGTATTCATGTTTGTATTATTTAAGAGAAAAACTTTGATTCT
* *
1107213 ATAAAAAACGGTTGGAGGAAAAGCTTTTTCTTACGACACTAAAGCGTCC-ATGTCATGTATCCTA
387 ATAAAAAACGGTTGGAAGAAAAGC-TTTTCTTACGACACTAAAGC-ACCAATGTCATGTATCCTA
*
1107277 ACGAAAAGAATGTGTTTTTGGTTA
450 ACGAAAGGAATGTG-TTTTGGTTA
* * * * *
1107301 TAATCTTAAAAAGAATGGAGACTGTTAAGAGAATTAATGCTTGCCTTATTTAAGGGATGAACTTT
1 CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTT
*
1107366 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
66 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
** ** * * *
1107431 CCTAATGACTAGAATGTGCCTATAATGCCTAATCACAAAATGAATGAAGATCATTACTTGAATCT
131 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCA
* * * * * * * *
1107496 ATATTTGTCTCACTT-TAGGCACAAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTTT
196 ATGTTTGTCT-A-TTAGAGGCACGAACTTAGACTTAACAAAAATTAGTAGGAAGAAAGCCTTTCT
* * * * * *
1107560 TGCAAAACCAAAGTATCAATATCGTCTATCCTAATGAGAAGACTATGTTTTTGATGCCTAAT
259 TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
1107622 GGTGAAAAAA
Statistics
Matches: 1433, Mismatches: 230, Indels: 122
0.80 0.13 0.07
Matches are distributed among these distances:
455 11 0.01
456 354 0.25
457 8 0.01
462 2 0.00
463 1 0.00
464 2 0.00
466 2 0.00
467 1 0.00
468 1 0.00
470 32 0.02
471 1 0.00
473 7 0.00
474 310 0.22
475 196 0.14
476 493 0.34
477 12 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (472 bp):
CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTT
GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCA
ATGTTTGTCTATTAGAGGCACGAACTTAGACTTAACAAAAATTAGTAGGAAGAAAGCCTTTCTTG
CGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATTTGAA
ATGAATGGGGATTAGTTTGAGTATTCATGTTTGTATTATTTAAGAGAAAAACTTTGATTCTATAA
AAAACGGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCACCAATGTCATGTATCCTAACGAAA
GGAATGTGTTTTGGTTA
Found at i:1106853 original size:456 final size:452
Alignment explanation
Indices: 1106000--1107393 Score: 1564
Period size: 456 Copynumber: 3.0 Consensus size: 452
1105990 TTTTCTTGCA
* * * ** * *
1106000 AAAGAAAATCATCAATATCATTTAACCTAAAGACAAGCATGTGTTTATAGTGCCTAATTATAAAA
1 AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAA
* * * *
1106065 TGAATAAAGATCATTGCTAGAATCAATGTTTGACATATTAGAGGCATGAACTTAGACTTAACAAA
66 TGAATGAAGATCATTACTAGAATCAA-GTTTGACATATTAGAGGCACGAACTTAGACTTAGCAAA
* * * *
1106130 AATTAGAAGCAAGAAAGCCTTTCTTGCGAAACCAACGCATCAATATCGTGTATCGTTATGAGAAG
130 AATTAGTAGCAAGAAAGCCTTTCTTGAGAAACCAA-GCGTCAATATCGTGTATCCTTATGAGAAG
*
1106195 ACTATGTTTATGGTGCCTAATCTTGAAACGAATGGGGATTAGTTTGAGTATTCATGTTTGTA-TT
194 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTG-ACTT
* * * *
1106259 ACTTAAGAGAAAAATTTTGATTCTATAAAAAATGGTTGGAGGAAAAGCTTTTCTTGCGGCACTAA
258 ATTTAAGAGAAAAACTTTGATTCTATAAAAAATGGTTGGAGGAAAAGCTTTTCTTACGACACTAA
* * * *
1106324 AGCACCAATGTCATGTATCCTATTGAAAGGAATGTGATTTTGGTTCCCACTCTTGAAAAGAATGA
323 AGCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTGGTT-CCAATCTTGAAAAGAATGG
* * * * * * *
1106389 ACACTATTACGAGAATCAATGCTTACCTTATTTACGAGATTAACATTGATTTTAAGGAAAATAGG
386 AGACTATTACGAGAATTAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
1106454 GC
451 GC
** * *
1106456 AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATGCATTTATAGTGCTTAATCACAAAA
1 AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAA
***
1106521 TGAATGAAGATCATTACTAGAATCCAAGTTTGTGTTATTTA-AGGCACGAACTTAGACTTAGCAA
66 TGAATGAAGATCATTACTAGAAT-CAAGTTTGACATA-TTAGAGGCACGAACTTAGACTTAGCAA
** * * * *
1106585 AAATTAGTAGCAAGAAAGTGTTTCTTAAGAAACCGAAGTGTCAATATCATGTATCCTAATGAGAA
129 AAATTAGTAGCAAGAAAGCCTTTCTTGAGAAACC-AAGCGTCAATATCGTGTATCCTTATGAGAA
* * * * * * *
1106650 GAATATGTTTATGGTGCCTGATCCTAAAAAGAATGGGAATTA-TTATGACTATTCATGTATGACT
193 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTT-TGAGTATTCATGTTTGACT
* ** * *
1106714 TATTTAAGAGACAAACTTT-ACTTCTACCAAAAATGG-TGGAAAGAAAAACTTTTCTTACGACAC
257 TATTTAAGAGAAAAACTTTGA-TTCTATAAAAAATGGTTGG-AGGAAAAGCTTTTCTTACGACAC
* *
1106777 AAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTCTTGGTGTCCAATCTTGAAAAGAA
320 TAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTT-TTGGT-TCCAATCTTGAAAAGAA
* * * *** *
1106842 TGGAGACTATTACGAGAATTGATGCTTGTCATAAAGAAGGGATGAATTTTGATTTTAAGGAAAAT
383 TGGAGACTATTACGAGAATTAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
1106907 AAGGCAAAACAGATTTCCATGC
448 -A-G-------G--------GC
* * *
1106929 AATAGAAAATC-GTCAATAACATTTCTCCTAATGAGGAGAATGTGTTTATAGTTCCTAATTACAA
1 AA-AGAAAATCAG-CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAA
* * * *
1106993 AACGAATGAAGATCATTCCTAGAATTCATA-TTTGACACATTAGAGAG-ACGAACTTAGGCTTAG
64 AATGAATGAAGATCATTACTAGAA-TCA-AGTTTGACATATTAGAG-GCACGAACTTAGACTTAG
* * * * *
1107056 CAAAAATTAGTAGGAAAAAAACCTTTCTTGTGAAACCAAAGCGTCAATATCGTGTATCTTTATGA
126 CAAAAATTAGTAGCAAGAAAGCCTTTCTTGAGAAACC-AAGCGTCAATATCGTGTATCCTTATGA
* *
1107121 GAAGACTATGTTTATGATGCCTAAT-TTGGAAATGAATGGGGATTAGTTTGAGTATTCATGTTTG
190 GAAGACTATGTTTATGGTGCCTAATCTT-GAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTG
* *
1107185 TCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAACGGTTGGAGGAAAAGCTTTTTCTTACGAC
254 ACTTATTTAAGAGAAAAACTTTGATTCTATAAAAAATGGTTGGAGGAAAAGC-TTTTCTTACGAC
* * * * ** *
1107250 ACTAAAGCGTCCATGTCATGTATCCTAACGAAAAGAATGTGTTTTTGGTTATAATCTTAAAAAGA
318 ACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTGGTTCCAATCTTGAAAAGA
* *
1107315 ATGGAGACTGTTAAGAGAATTAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
382 ATGGAGACTATTACGAGAATTAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
1107380 TAGGGC
447 TAGGGC
1107386 AAAGAAAA
1 AAAGAAAA
1107394 GATTTTCATG
Statistics
Matches: 775, Mismatches: 125, Indels: 76
0.79 0.13 0.08
Matches are distributed among these distances:
455 9 0.01
456 365 0.47
457 14 0.02
458 1 0.00
465 2 0.00
472 1 0.00
473 10 0.01
474 310 0.40
475 61 0.08
476 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (452 bp):
AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAA
TGAATGAAGATCATTACTAGAATCAAGTTTGACATATTAGAGGCACGAACTTAGACTTAGCAAAA
ATTAGTAGCAAGAAAGCCTTTCTTGAGAAACCAAGCGTCAATATCGTGTATCCTTATGAGAAGAC
TATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGACTTATT
TAAGAGAAAAACTTTGATTCTATAAAAAATGGTTGGAGGAAAAGCTTTTCTTACGACACTAAAGC
ATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGTTCCAATCTTGAAAAGAATGGAGACT
ATTACGAGAATTAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
Found at i:1107342 original size:930 final size:931
Alignment explanation
Indices: 1105525--1107393 Score: 2465
Period size: 930 Copynumber: 2.0 Consensus size: 931
1105515 TTTCCATGCA
* * *
1105525 AAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGATTATAGTGCCTAATCACAAAA
1 AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATGTCATTATAGTGCCTAATCACAAAA
* * *
1105590 TGAATGAAGATCATTACTGTAATCTATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAA
66 TGAATGAAGATCATTACTGTAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAA
* * ** * *
1105655 AATTAGGGGAAGAAAGCCTTTCTTCCGAAACCAAAGCATCAACATCTTGCATCCTTATGAGAAGA
131 AATTAGAGCAAGAAAGCCTTTCTTAAGAAACCAAAGCATCAACATCATGCATCCTAATGAGAAGA
* * * * * * * * * *
1105720 CTAAGTTTATGGTGTCTAATTCTGAAATGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTAT
196 ATAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGAATTAGTATGACTATTCATGTATGACTTAT
* * * * *
1105785 TTAATAGAAAAACTTTGATTCTATCAAAAACGGTTGGAAGAAAAGCTTTTCTTGCGACACTAAAG
261 TTAAGAGAAAAACTTTGATTCTACCAAAAACGGTTGGAAGAAAAACTTTTCTTACGACACAAAAG
* *
1105850 CATCAATGTCATGTTTCCTAACGAAGAGAATGTGTTTTCGGTGCACAATCTTGAAAAGAATGGAG
326 CATCAATGTCATGTATCCTAACGAAGAGAAAGTGTTTTCGGTGCACAATCTTGAAAAGAATGGAG
* *** * * *
1105915 ACTATTACGAGAATCAATGCTTGCCTACTTTATGGGATAAACTTTGATTTTATGGAAAATAGGGC
391 ACTATTACGAGAATCAATGCTTGCATACAAGAAGGGATAAACTTTGATTTTAAGGAAAATAAGGC
* * * *
1105980 AAAGAAAAGATTTTCTTGCAAAAGAAAATCATCAATATCATTTAACCTAAAGACAAGCATGTGTT
456 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAACATTTAACCTAAAGACAAGAATGTGTT
* * * * *
1106045 TATAGTGCCTAATTATAAAATGAATAAAGATCATTGCTAGAATCAATGTTTGACATATTAGAGGC
521 TATAGTGCCTAATTACAAAACGAATAAAGATCATTCCTAGAATCAATATTTGACACATTAGAGGC
* * * *
1106110 ATGAACTTAGACTTAACAAAAATTAGAAGCAAGAAAGCCTTTCTTGCGAAACCAACGCATCAATA
586 ACGAACTTAGACTTAACAAAAATTAGAAGCAAAAAAACCTTTCTTGCGAAACCAAAGCATCAATA
*
1106175 TCGTGTATCGTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAACGAATGGGGATTAGTTT
651 TCGTGTATCGTTATGAGAAGACTATGTTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTTT
* *
1106240 GAGTATTCATGTTTGTATTACTTAAGAGAAAAATTTTGATTCTATAAAAAATGGTTGGAGGAAAA
716 GAGTATTCATGTTTGTATTACTTAAGAGAAAAACTTTGATTCTATAAAAAACGGTTGGAGGAAAA
* * ** *
1106305 GCTTTTCTTGCGGCACTAAAGCACCAATGTCATGTATCCTATTGAAAGGAATGTGATTTTGGTTC
781 GCTTTTCTTACGACACTAAAGCACCAATGTCATGTATCCTAACGAAAAGAATGTGATTTTGGTTC
* * * * * *
1106370 CCACTCTTGAAAAGAATGAACACTATTACGAGAATCAATGCTTACCTTATTTACGAGATTAACAT
846 ACAATCTTAAAAAGAATGAACACTATTAAGAGAATCAATGCTTACCTTATTTAAGAGATGAACAT
1106435 TGATTTTAAGGAAAATAGGGC
911 TGATTTTAAGGAAAATAGGGC
*
1106456 AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATG-CATTTATAGTGCTTAATCACAAA
1 AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATGTCA-TTATAGTGCCTAATCACAAA
* * *
1106520 ATGAATGAAGATCATTACTAG-AATCCAAGTTTGTGTTATTTAAGGCACGAACTTAGAC-TTAGC
65 ATGAATGAAGATCATTACT-GTAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGACTTTA-C
** * ** * *
1106583 AAAAATTAGTAGCAAGAAAGTGTTTCTTAAGAAACCGAAGTGTCAATATCATGTATCCTAATGAG
128 AAAAATTAG-AGCAAGAAAGCCTTTCTTAAGAAACCAAAGCATCAACATCATGCATCCTAATGAG
* * *
1106648 AAGAATATGTTTATGGTGCCTGATCCTAAAAAGAATGGGAATTATTATGACTATTCATGTATGAC
192 AAGAATAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGAATTAGTATGACTATTCATGTATGAC
* *
1106713 TTATTTAAGAGACAAACTTT-ACTTCTACCAAAAATGG-TGGAAAGAAAAACTTTTCTTACGACA
257 TTATTTAAGAGAAAAACTTTGA-TTCTACCAAAAACGGTTGG-AAGAAAAACTTTTCTTACGACA
*
1106776 CAAAAGCATCAATGTCATGTATCCTAATGAA-AGGAAAGTGTTCTT-GGTGTC-CAATCTTGAAA
320 CAAAAGCATCAATGTCATGTATCCTAACGAAGA-GAAAGTGTT-TTCGGTG-CACAATCTTGAAA
** * *
1106838 AGAATGGAGACTATTACGAGAATTGATGCTTGTCATA-AAGAAGGGATGAATTTTGATTTTAAGG
382 AGAATGGAGACTATTACGAGAATCAATGCTTG-CATACAAGAAGGGATAAACTTTGATTTTAAGG
* * * ** * **
1106902 AAAATAAGGC-AA-AACAGATTTCCATGCAATAGAAAATCGTCAATAACATTTCTCCTAATGAGG
446 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAACATTTAACCTAAAGACA
* *
1106965 AGAATGTGTTTATAGTTCCTAATTACAAAACGAATGAAGATCATTCCTAGAATTC-ATATTTGAC
511 AGAATGTGTTTATAGTGCCTAATTACAAAACGAATAAAGATCATTCCTAGAA-TCAATATTTGAC
* * * * *
1107029 ACATTAGAGAG-ACGAACTTAGGCTTAGCAAAAATTAGTAGGAAAAAAACCTTTCTTGTGAAACC
575 ACATTAGAG-GCACGAACTTAGACTTAACAAAAATTAGAAGCAAAAAAACCTTTCTTGCGAAACC
* * *
1107093 AAAGCGTCAATATCGTGTATCTTTATGAGAAGACTATGTTTATGATGCCTAAT-TTGGAAATGAA
639 AAAGCATCAATATCGTGTATCGTTATGAGAAGACTATGTTTATGATGCCTAATCTT-GAAACGAA
* *
1107157 TGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAAC
703 TGGGGATTAGTTTGAGTATTCATGTTTGTATTACTTAAGAGAAAAACTTTGATTCTATAAAAAAC
*
1107222 GGTTGGAGGAAAAGCTTTTTCTTACGACACTAAAGCGTCC-ATGTCATGTATCCTAACGAAAAGA
768 GGTTGGAGGAAAAGC-TTTTCTTACGACACTAAAGC-ACCAATGTCATGTATCCTAACGAAAAGA
* * * * * * *
1107286 ATGTGTTTTTGGTT-ATAATCTTAAAAAGAATGGAGACTGTTAAGAGAATTAATGCTTGCCTTAT
831 ATGTGATTTTGGTTCACAATCTTAAAAAGAATGAACACTATTAAGAGAATCAATGCTTACCTTAT
* *
1107350 TTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
896 TTAAGAGATGAACATTGATTTTAAGGAAAATAGGGC
1107386 AAAGAAAA
1 AAAGAAAA
1107394 GATTTTCATG
Statistics
Matches: 809, Mismatches: 114, Indels: 31
0.85 0.12 0.03
Matches are distributed among these distances:
929 2 0.00
930 363 0.45
931 180 0.22
932 258 0.32
933 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (931 bp):
AAAGAAAATCAGCAATATCATTTATCCTAATGAGGAGAATGTCATTATAGTGCCTAATCACAAAA
TGAATGAAGATCATTACTGTAATCCAAGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAA
AATTAGAGCAAGAAAGCCTTTCTTAAGAAACCAAAGCATCAACATCATGCATCCTAATGAGAAGA
ATAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGAATTAGTATGACTATTCATGTATGACTTAT
TTAAGAGAAAAACTTTGATTCTACCAAAAACGGTTGGAAGAAAAACTTTTCTTACGACACAAAAG
CATCAATGTCATGTATCCTAACGAAGAGAAAGTGTTTTCGGTGCACAATCTTGAAAAGAATGGAG
ACTATTACGAGAATCAATGCTTGCATACAAGAAGGGATAAACTTTGATTTTAAGGAAAATAAGGC
AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAACATTTAACCTAAAGACAAGAATGTGTT
TATAGTGCCTAATTACAAAACGAATAAAGATCATTCCTAGAATCAATATTTGACACATTAGAGGC
ACGAACTTAGACTTAACAAAAATTAGAAGCAAAAAAACCTTTCTTGCGAAACCAAAGCATCAATA
TCGTGTATCGTTATGAGAAGACTATGTTTATGATGCCTAATCTTGAAACGAATGGGGATTAGTTT
GAGTATTCATGTTTGTATTACTTAAGAGAAAAACTTTGATTCTATAAAAAACGGTTGGAGGAAAA
GCTTTTCTTACGACACTAAAGCACCAATGTCATGTATCCTAACGAAAAGAATGTGATTTTGGTTC
ACAATCTTAAAAAGAATGAACACTATTAAGAGAATCAATGCTTACCTTATTTAAGAGATGAACAT
TGATTTTAAGGAAAATAGGGC
Found at i:1107358 original size:474 final size:474
Alignment explanation
Indices: 1106454--1107621 Score: 1347
Period size: 474 Copynumber: 2.5 Consensus size: 474
1106444 GGAAAATAGG
** *
1106454 GCAAAGAAAATCAG-CAATATCATTTATCCTAATGAGGAGAATGCATTTATAGTGCTTAATCACA
1 GCAAAGAAAATC-GTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* ***
1106518 AAATGAATGAAGATCATTACTAGAATCCA-AGTTTGTGTTATTTA-AGGCACGAACTTAGACTTA
65 AAATGAATGAAGATCATTACTAGAATTCATA-TTTGTCACA-TTAGAGG-ACGAACTTAGACTTA
* ** * * *
1106581 GCAAAAATTAGTAGCAAGAAAGTGTTTCTTAAGAAACCGAAGTGTCAATATCATGTATCCTAATG
127 GCAAAAATTAGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGTGTCAATATCGTGTATCCTAATG
* * *
1106646 AGAAGAATATGTTTATGGTGCCTGATCCTAAAAAGAATGGGAATTATTATGACTATTCATGTATG
192 AGAAGACTATGTTTATGATGCCTAATCCTAAAAAGAATGGGAATTATTATGACTATTCATGTATG
* * *
1106711 ACTTATTTAAGAGACAAACTTTACTTCTACCAAAAATGGTGGAAAGAAAAACTTTTCTTACGACA
257 ACTTATTTAAGAGAAAAACTTTACTTCTACAAAAAACGGTGGAAAGAAAAACTTTTCTTACGACA
* * * *
1106776 CAAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTCTTGGTGTCCAATCTTGAAAAGA
322 CAAAAGCATCAATGTCATGTATCCTAACGAAAAGAAAGTGTTCTTGGTGTACAATCTTAAAAAGA
* * * *
1106841 ATGGAGACTATTACGAGAATTGATGCTTGTCATAAAGAAGGGATGAATTTTGATTTTAAGGAAAA
387 ATGGAGACTATTAAGAGAATTAATGCTTGCCATAAAGAAGGGATGAACTTTGATTTTAAGGAAAA
*
1106906 TAAGGC-AA-AACAGATTTCCAT
452 TAAGGCAAAGAAAAGATTTCCAT
* * * *
1106927 GCAATAGAAAATCGTCAATAACATTTCTCCTAATGAGGAGAATGTGTTTATAGTTCCTAATTACA
1 GCAA-AGAAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * *
1106992 AAACGAATGAAGATCATTCCTAGAATTCATATTTGACACATTAGAGAGACGAACTTAGGCTTAGC
65 AAATGAATGAAGATCATTACTAGAATTCATATTTGTCACATTAGAG-GACGAACTTAGACTTAGC
* * * * * *
1107057 AAAAATTAGTAGGAAAAAAACCTTTCTTGTGAAACCAAAGCGTCAATATCGTGTATCTTTATGAG
129 AAAAATTAGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGTGTCAATATCGTGTATCCTAATGAG
* * * * * *
1107122 AAGACTATGTTTATGATGCCTAAT-TTGGAAATGAATGGGGATTAGTT-TGAGTATTCATGTTTG
194 AAGACTATGTTTATGATGCCTAATCCT-AAAAAGAATGGGAATTA-TTATGACTATTCATGTATG
* * * *
1107185 TCTTATTTAAGAGAAAAACTTTGA-TTCTATAAAAAACGGTTGG-AGGAAAAGCTTTTTCTTACG
257 ACTTATTTAAGAGAAAAACTTT-ACTTCTACAAAAAACGG-TGGAAAGAAAAAC-TTTTCTTACG
* * * * * *
1107248 ACACTAAAGCGTCCATGTCATGTATCCTAACGAAAAGAATGTGTTTTTGGT-TATAATCTTAAAA
319 ACACAAAAGCATCAATGTCATGTATCCTAACGAAAAGAAAGTGTTCTTGGTGTACAATCTTAAAA
* * ***
1107312 AGAATGGAGACTGTTAAGAGAATTAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGA
384 AGAATGGAGACTATTAAGAGAATTAATGCTTGCCATAAAGAAGGGATGAACTTTGATTTTAAGGA
* *
1107377 AAATAGGGCAAAGAAAAGATTTTCAT
449 AAATAAGGCAAAGAAAAGATTTCCAT
* ** ** *
1107403 GCAAAAGAAAATCATCAATATCATTTATCCTAATGACTAGAATGTGCCTATAATGCCTAATCACA
1 GC-AAAGAAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * * *
1107468 AAATGAATGAAGATCATTACTTGAA-TCTATATTTGTCTCACTTTAG-GCACAAACTTACACTTT
65 AAATGAATGAAGATCATTACTAGAATTC-ATATTTG--TCACATTAGAGGACGAACTTAGAC-TT
* * * * *
1107531 A-CAAAAATTGGTGGGAAGAAAGCCTTTTTTGCA-AAACCAAAGTATCAATATCGTCTATCCTAA
126 AGCAAAAATTAGTAGGAAGAAAGCCTTTCTTG-AGAAACCAAAGTGTCAATATCGTGTATCCTAA
*
1107594 TGAGAAGACTATGTTTTTGATGCCTAAT
190 TGAGAAGACTATGTTTATGATGCCTAAT
1107622 GGTGAAAAAA
Statistics
Matches: 581, Mismatches: 96, Indels: 33
0.82 0.14 0.05
Matches are distributed among these distances:
473 9 0.02
474 315 0.54
475 66 0.11
476 178 0.31
477 6 0.01
478 7 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
GCAAAGAAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
AATGAATGAAGATCATTACTAGAATTCATATTTGTCACATTAGAGGACGAACTTAGACTTAGCAA
AAATTAGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGTGTCAATATCGTGTATCCTAATGAGAA
GACTATGTTTATGATGCCTAATCCTAAAAAGAATGGGAATTATTATGACTATTCATGTATGACTT
ATTTAAGAGAAAAACTTTACTTCTACAAAAAACGGTGGAAAGAAAAACTTTTCTTACGACACAAA
AGCATCAATGTCATGTATCCTAACGAAAAGAAAGTGTTCTTGGTGTACAATCTTAAAAAGAATGG
AGACTATTAAGAGAATTAATGCTTGCCATAAAGAAGGGATGAACTTTGATTTTAAGGAAAATAAG
GCAAAGAAAAGATTTCCAT
Found at i:1107882 original size:273 final size:273
Alignment explanation
Indices: 1107384--1107894 Score: 627
Period size: 273 Copynumber: 1.9 Consensus size: 273
1107374 GGAAAATAGG
* *
1107384 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGACTAGAATGTG
1 GCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGACTAGAATGTG
* * * * * *
1107449 CCTATAATGCCTAATCACAAAATGAATGAAGATCATTACTTGAATCTATATTTGTCTCACTTTAG
66 CCTATAATGCCTAATCACAAAATGAATGAAGATAATTACTAGAATCAATACTTGACTCACTTGAG
**** * * *
1107514 GCACAAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTTTTGCAAAACCAAAGTATCAA
131 GCACAAACTTACACTTTACAAAAATTAAAAGCAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAA
*
1107579 TATCGTCTATCCTAATGAGAAGACTATGTTTTTGATGCCTAATGGTGAAAAAAATTAGGATTAAT
196 TATCGTCTATCCTAATGAGAAGACTATGTTTATGATGCCTAATGGTGAAAAAAATTAGGATTAAT
1107644 ACGATAATTTCAA
261 ACGATAATTTCAA
* * * * *
1107657 GCAAAGAAGAGAATTTCATGCAAAATAAAATCATCAACATCATTTATTCTAATGAGGT-GCATGT
1 GCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGA-CTAGAATGT
** * * * *
1107721 GTTTATAGTGCCTAATTACAAAATGAATGAAGATAATTGCTAGAATCAATGCTTGACAT-A-TTA
65 GCCTATAATGCCTAATCACAAAATGAATGAAGATAATTACTAGAATCAATACTTGAC-TCACTT-
* * *
1107784 GAGGCACGAACTTAGAC-TTAGCAAAAATTAAAAGCAAGAAAGCCTTTCTTGCGAAACCAAAGCA
128 GAGGCACAAACTTACACTTTA-CAAAAATTAAAAGCAAGAAAGCCTTTCTTGCAAAACCAAAGCA
* * * * *
1107848 TCAATATCGTGTATCGTTA-GTAGAAGAGTATGTTTATGGTGCCTAAT
192 TCAATATCGTCTATCCTAATG-AGAAGACTATGTTTATGATGCCTAAT
1107895 CCTGAAACAA
Statistics
Matches: 198, Mismatches: 35, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
272 6 0.03
273 190 0.96
274 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (273 bp):
GCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGACTAGAATGTG
CCTATAATGCCTAATCACAAAATGAATGAAGATAATTACTAGAATCAATACTTGACTCACTTGAG
GCACAAACTTACACTTTACAAAAATTAAAAGCAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAA
TATCGTCTATCCTAATGAGAAGACTATGTTTATGATGCCTAATGGTGAAAAAAATTAGGATTAAT
ACGATAATTTCAA
Found at i:1109485 original size:476 final size:474
Alignment explanation
Indices: 1108135--1110087 Score: 2223
Period size: 476 Copynumber: 4.1 Consensus size: 474
1108125 AAAATAGGGC
* *
1108135 AAAGAAAATCAGT-AATATCATTTATCCTAATGAGGAGAATGCGCTTATAATGCCTAATCACAAA
1 AAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAA
* *
1108199 ATGAATGAAGATCATTACTAGAATCCA-AGTTTGTCTTATTTA-AGGCACGAATTTAGAC-TTAG
65 ATGAATGAAGATCATTACTAGAATCCATA-TTTGTCTCA-TTAGAGGCACGAACTTAGACTTTA-
* ** * *
1108261 CAAAAATTAGTAGCAAGAAAGCCTTTCTTG-AGAAACCAAAGTGTCAATATCGTGTGTCCTAA-G
127 CAAAAATTAGTAGGAAGAAAGCCTTTCTTGTA-AAACCAAAGCATCAATATCGTCTATCCTAATG
*
1108324 AAGAAGAAC-ATGTTTATGGTGCCTAATCCT-AAAAAGAAT-GGGATTAATATGACTATTCATGT
191 -AGAAG-ACTATGTTTATGGTGCCTAAT-CTGAAAAAGAATGGGGATTAATATGACAATTCATGT
* * * * * *
1108386 TTGTCTTATTTAAGAGACAAACTTTAATTCTACCAAAAATGGTGGAAAGAAAAACTTTTCTCACG
253 TTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTACG
* * * * *
1108451 ACAAAAAAGCGTCAT-T-A--AACCCTAATGAAAAGAAAGTGTTCTTGGTGTCCAATCTTGAAAA
318 ACACAAAAGCATCATGTCATGTATCCTAATGAAAGGAAAGTGTTCTTGGT-TCCAATCTTGAAAA
* * * * * *
1108512 GAATGGAGACTATTACGAGAATCGATGCTTGTCATAA-TGAAGGGATGAATTTTGATTTTAAGGA
382 GAATGGAGACTGTTACGAGAATCAATGCTTG-CCTAATTTAAGGGATAAACTTTGATTTTAAGGA
* *
1108576 AAATAAGGC-AA-AAAAGATTTCCATGCA
446 AAATAGGGCAAAGAAAAGATTTTCATGCA
* ** * * *
1108603 ATAGAAAATCATCAATAAGATTTCTCCTAATGAGGAGAACGTGCTTCTAGTGCCTAATCACAAAA
1 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* * *
1108668 TGAATGAAGATCATTACTTGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
66 TGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTAGAGGCACGAACTTAGACTTTACAAA
* * * * *
1108733 AATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAGTATCGTCTACCCTAATGAGAAG
131 AATTAGTAGGAAGAAAGCCTTTCTTGTAAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAG
* * * ** * * * ** *
1108798 GCTATATTT-CGGTGCCTAATCCCAAAAAGAATGGGAAATAGTA-GTAGTATTTATGTTTGTCTT
196 ACTATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAATATG-ACAATTCATGTTTGTCTT
* * * * * * * *
1108861 ATTTAATAGAAAAACTTTGATTCAATCAAAAACGGT-TAGAAGAAAAGCTTTTCTTGCAACCCTA
260 ATTTAAGAGAAAAACTTTGATTCTATCAAAAAAGGTGGA-AAGAAAAGCTTTTCTTACGACACAA
* * * * * ** *
1108925 AGGCATCATTGTAATGTGTCCTAATGAAGGGAATGTGTT-TCTCATTCGCAATCTTGAAAAAAAT
324 AAGCATCA-TGTCATGTATCCTAATGAAAGGAAAGTGTTCT-TGGTTC-CAATCTTGAAAAGAAT
* *
1108989 GGAGACTGTTATGAGAATCAATGCTTGCCTAATTTAAGAGATAAACTTTGATTTTAAGGAAAATA
386 GGAGACTGTTACGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATA
*
1109054 TGGCAAAGAAAAGATTTTCATGCA
451 GGGCAAAGAAAAGATTTTCATGCA
* * * * *
1109078 AAAGAAAATTATCAATATCATTTATCCTAATGAAGG-GAATGTGTTTATAGTTCCTAATTAAAAA
1 AAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATCACAAA
* * * * *
1109142 ACGAATGAAGATCATTACTAGAATTCATATTTGACACATTAGAGACACGAACTTAGA-TTTAGCA
65 ATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTAGAGGCACGAACTTAGACTTTA-CA
* * * * *
1109206 AAAATTAGTAGGAAAAAAGCCTTTCTT-TCAAAACCAAAGCGTCAATATCGTGTATCTTTATGAG
129 AAAATTAGTAGGAAGAAAGCCTTTCTTGT-AAAACCAAAGCATCAATATCGTCTATCCTAATGAG
* * * *
1109270 AAGACTATGTTTATGGTGCCTAATCTGGAAATGAATGGGGATTAGTTTGAGC-ATTCATGTTTGT
193 AAGACTATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAATATGA-CAATTCATGTTTGT
*
1109334 CTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTTGG-AAGAAAAGCTTTTTCTTACGAC
257 CTTATTTAAGAGAAAAACTTTGATTCTATCAAAAA-AGGTGGAAAGAAAAGC-TTTTCTTACGAC
* * * * * * *
1109398 ACTAAAGCATCCATGTCATGTATCCTAACGAAAGGAATGTGTTTTTGGTTCTAATCTTGAAATGC
320 ACAAAAGCAT-CATGTCATGTATCCTAATGAAAGGAAAGTGTTCTTGGTTCCAATCTTGAAAAGA
* *
1109463 ATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGAAAAACTTTGATTTTAAGGAAAA
384 ATGGAGACTGTTACGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAA
1109528 TAGGGCAAAGAAAAGATTTTCATGCA
449 TAGGGCAAAGAAAAGATTTTCATGCA
* *
1109554 AAATAAAATCATCAATATCATTTATCCTAATGATGAGAATGTGCTTATAGTGCCTAATCACAAAA
1 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* * * * * * *
1109619 TGAATGAAGATCATTACTTGAATCTATGTTTGTCTCATTTGAGGTACAAACTTACACTTTACAAA
66 TGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTAGAGGCACGAACTTAGACTTTACAAA
* * * * *
1109684 AATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAG
131 AATTAGTAGGAAGAAAGCCTTTCTTGTAAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAG
* * * * *
1109749 ACTATGTTTCTGGTGCCTAATGGTG-AAAAGAATGAGGATTAATATCACAATTCTTGTTTGTCTT
196 ACTATGTTTATGGTGCCTAAT-CTGAAAAAGAATGGGGATTAATATGACAATTCATGTTTGTCTT
* * *
1109813 ATTTAAGAGACAAACTTTGATTCTGTCAAAAAAGGTGGAAAGAAAAGCTTTTC-TAGCTACACAA
260 ATTTAAGAGAAAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTA-CGACACAA
*
1109877 AAGCATCAATGTCATGTATCCTAATGAATGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATG
324 AAGCATC-ATGTCATGTATCCTAATGAAAGGAAAGTGTTCTTGG-TTCCAATCTTGAAAAGAATG
* * ** * * * *
1109942 GAGACAGTTAGGAGAATCGTTGCTTGTCTTATTTAAGGGATAGATTTTGATTTTAAGGAAAATAG
387 GAGACTGTTACGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAG
* *
1110007 GGCAAAGAAGAGAATTTCATGCA
452 GGCAAAGAAAAGATTTTCATGCA
* * * * *
1110030 AATGAAAATCATCAATATCATTTATTCTAATGAGGTGCATGTGTTTATAGTGCCTAAT
1 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAAT
1110088 TGACTCATTA
Statistics
Matches: 1246, Mismatches: 198, Indels: 74
0.82 0.13 0.05
Matches are distributed among these distances:
466 1 0.00
467 25 0.02
468 241 0.19
469 5 0.00
470 1 0.00
471 1 0.00
472 7 0.01
473 89 0.07
474 10 0.01
475 234 0.19
476 571 0.46
477 58 0.05
478 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
TGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTAGAGGCACGAACTTAGACTTTACAAA
AATTAGTAGGAAGAAAGCCTTTCTTGTAAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAATATGACAATTCATGTTTGTCTTA
TTTAAGAGAAAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTACGACACAAAA
GCATCATGTCATGTATCCTAATGAAAGGAAAGTGTTCTTGGTTCCAATCTTGAAAAGAATGGAGA
CTGTTACGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCA
AAGAAAAGATTTTCATGCA
Found at i:1111627 original size:158 final size:157
Alignment explanation
Indices: 1110466--1112102 Score: 459
Period size: 159 Copynumber: 10.3 Consensus size: 157
1110456 AAAAGAAAAT
* * * * * *
1110466 CATCAATATCATTTATCCTAAAGAGGAG-ATGTGCTTCTAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAG
* * * ** ** * * *
1110530 ATCTTTACTCGAATCCGTGTTTAACTCATTTGAAGGGCATGAACTTAGACTTTACTATAATTGGT
66 ATCATTACTTGAATCCATGTTTGTCTCATTTG-A-GG-AAAAACTTACACTTTACAAAAATTGGT
* **
1110595 GGGAAGAAAGCCTTTCTTGTGAAACCAAAG
128 GGAAAGAAAGCCTTTCTTGCAAAACCAAAG
* * * * * * * *
1110625 CATTAGTATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCGAATCTCGAAATGAATG-AG
1 CATCAATATCATCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAG
*** * ** * * **
1110689 GGGATTAGTATGAGTATTTATGTTTGTCTTATTTCGTGGAAAAACTTTGA-TTCTATCAAAAA-T
66 ATCATTACT-TGA--ATCCATGTTTGTCTCATTT-GAGGAAAAACTTACACTT-TA-CAAAAATT
* * *
1110752 GGTTGG-AAGAAAAGCTTTTCTTGCAACACTAAAG
125 GG-TGGAAAG-AAAGCCTTTCTTGCAAAACCAAAG
* ** * * * * * ** *
1110786 AATCAATGCCATGTATCCTAACGA-AGGGAATGTGCTTT-TGGTTCCCAATCTTGAAAA-GAA-C
1 CATCAATATCATCTATCCTAATGAGA-AGAATGTG-TTTATGGTGCCTAATC-ACAAAATGAATG
* * * * * ** *
1110847 AGAGA-C--TACTATGAGATTCATTGTTCGCCTAATTT-ATGGGATAAACTTTGATTTTA-AGGA
63 A-AGATCATTACT-TGA-ATCCA-TGTTTGTCTCATTTGA--GGAAAAACTTACACTTTACA--A
* * ** * ** *
1110907 AAATAGG-GCAAAGAAAAGGTTTTCATGCAAAAAAAAAT
120 AAATTGGTGGAAAG-AAAGCCTTTCTTGCAAAACCAAAG
* * * * * * *
1110945 CATTAATAT-ATTTATCCTAATGAGGATAATGTGTTTATAGTGCCTAATTACAAAATAAATGAAG
1 CATCAATATCATCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAG
* * * *** ** * *
1111009 ATCATTACTAGAATCCTTGTTTGACTCACAAGAGGCACGAACTTAGAC-TTAGCAAAAATTAGTA
66 ATCATTACTTGAATCCATGTTTGTCTCATTTGAGG-AAAAACTTACACTTTA-CAAAAATTGGT-
* *
1111073 GG-AAGAAAGCCTTTCTTG-AGAAGCCAAAA
128 GGAAAGAAAGCCTTTCTTGCA-AAACCAAAG
* * ** * ** * * * * * * ***
1111102 CGTCAAAATTGTGTATATTTATGAGAATACTATGTTT-TGGAGCCTAATC-CTAAAACGAATTTG
1 CATCAATATCATCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCAC-AAAATGAATGAA
* * * * **
1111165 GATTAGT--TTGAGTATTCATGTTTGTCTTATTTGAGAGAAAAACTTTGA-TTCTATCAAAAAAA
65 GATCATTACTTGA--ATCCATGTTTGTCTCATTTGAG-GAAAAACTTACACTT-TA-C---AAAA
* * * * * *
1111227 ATT--TGGAAAAAAAGCTTTTCTTACGACACTAAAG
122 ATTGGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAG
* * * * * **
1111261 CATCAATGTCATGTATCCTAAGGA-AGAGAATGTGTTTTTGGTACAC-AATCTTGAAAA-GAATG
1 CATCAATATCATCTATCCTAATGAGA-AGAATGTGTTTATGGTGC-CTAATC-ACAAAATGAATG
* ** * * * * * * ** *
1111323 GAGA-CTATTACGAGAATCAATGCTTGCCTAATTTATAGGATAAACTTTGATTTTA-AGGAAAAT
63 AAGATC-ATTACTTGAATCCATGTTTGTCTCATTT-GAGGAAAAACTTACACTTTACA--AAAAT
** * ** * ** *
1111386 AAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAAT
124 TGGTGGAAAG-AAAGCCTTTCTTGCAAAACCAAAG
* * *
1111420 CATCAATATCATTTATCCTAATGATG-AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA
1 CATCAATATCATCTATCCTAATGA-GAAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAA
*
1111484 GATCATTACTTGAATCCATGTTTGTCTCATTTGAGGCACAAACTTACACTTTACAAAAATTGGTG
65 GATCATTACTTGAATCCATGTTTGTCTCATTTGAGG-AAAAACTTACACTTTACAAAAATTGGTG
* * *
1111549 GGAAGAAAGCCTTTGTTGCGAAACCAAAG
129 GAAAGAAAGCCTTTCTTGCAAAACCAAAG
* * * * * * ***
1111578 CATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATC-CTGAAACGAATTTG
1 CATCAATATCATCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCAC-AAAATGAATGAA
* * * * **
1111642 GATTAGT--TTGAGTATTCATGTTTGTCTTATTTGAGAGAAAAACTTTGA-TTCTATCAAAAAAA
65 GATCATTACTTGA--ATCCATGTTTGTCTCATTTGAG-GAAAAACTTACACTT-TA-C--AAAAA
* * * * * *
1111704 TT--TGGAAAAAAAGCTTTTCTTACGACACTAAAG
123 TTGGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAG
* * * * ** **
1111737 CATCAATGTCATGTATCCTAACGA-AGAGAATGTGTTTTTGGCACAC-AATCTTGAAAA-GAATG
1 CATCAATATCATCTATCCTAATGAGA-AGAATGTGTTTATGGTGC-CTAATC-ACAAAATGAATG
* * ** * * * * * * ** *
1111799 GAGA-CTTTTACGAGAATCAATGCTTGCCTAATTTATAGGATAAACTTTGATTTTA-AGGAAAAT
63 AAGATC-ATTACTTGAATCCATGTTTGTCTCATTT-GAGGAAAAACTTACACTTTACA--AAAAT
* * ** * ** *
1111862 AGG-GCAAAGAAAAGATTTTCATGCAAAAGAAAAT
124 TGGTGGAAAG-AAAGCCTTTCTTGCAAAACCAAAG
* * * * *
1111896 CATCAATATCATTTATCCTAATGATG-AGAATGTGCTTATAGTGCCTAATCACAAAATTAATAAA
1 CATCAATATCATCTATCCTAATGA-GAAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAA
* * *
1111960 GATCATTTCTTGAATCCATGTTTGTCTCATTTGAGGCAGAAACTTACACTTTAGAAAAATTGGTG
65 GATCATTACTTGAATCCATGTTTGTCTCATTTGAGG-AAAAACTTACACTTTACAAAAATTGGTG
* *
1112025 GGAAGAAAGCCTTTGTTGCAAAACCAAAG
129 GAAAGAAAGCCTTTCTTGCAAAACCAAAG
* * * *
1112054 CATCAATATCGTCTATCCTAATGAGAAGACTATGTTTCTGGTGCCTAAT
1 CATCAATATCATCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
1112103 GGTGAAAAGA
Statistics
Matches: 1044, Mismatches: 331, Indels: 207
0.66 0.21 0.13
Matches are distributed among these distances:
155 5 0.00
156 6 0.01
157 100 0.10
158 275 0.26
159 437 0.42
160 105 0.10
161 91 0.09
162 24 0.02
163 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
CATCAATATCATCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAG
ATCATTACTTGAATCCATGTTTGTCTCATTTGAGGAAAAACTTACACTTTACAAAAATTGGTGGA
AAGAAAGCCTTTCTTGCAAAACCAAAG
Found at i:1111735 original size:476 final size:475
Alignment explanation
Indices: 1110087--1117135 Score: 7000
Period size: 476 Copynumber: 15.0 Consensus size: 475
1110077 TAGTGCCTAA
* * * * * * * * *
1110087 TTGACTCATTAGCGGCACAAACTTACACTTAGCAAAAATTAGTAGCAAGAAAGCTTTTCTCGAGA
1 TTGACTCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGA
** * ** * *
1110152 AACCAAAGTGTCAATATCATGTGCCCTAATGAGAAGACTATGCTTATGGTGCCTAATCCTAAAAA
66 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * ** *
1110217 GAATGGGGATTTA-TATGACTATTCATGTTTGTCTTGTTTAAGAGACAAACTTTGATTC-GGCCA
131 GAATGGGGA-TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAA
* * * * * *
1110280 AAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATTCTAATGAA-
195 AAAAAGTTGG-AAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAAG
** * *
1110344 AGAAAAATGTTCTTGGTTTCCAATC-TGCAAAAGAATTGAG-C-A-T-C--G-----ATGCTTGT
259 AG-AATGTGTTTTTGG-TTCCAATCTTG-AAAAGAATGGAGACTATTACGAGAATCAATGCTTG-
* * * * * * *
1110397 CATAA-TGAGGGGATGAATTTTGATTTTAAGAAAAATAAGGG-AAA-AAAAGATTTCCATGCAAA
320 CCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTTCATGCAAA
* *
1110459 AGAAAATCATCAATATCATTTATCCTAAAGAGGAG-ATGTGCTTCTAGTGCCTAATCACAAAATG
384 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
* * *
1110523 AATGAAGATCTTTACTCGAATCCGTGT
449 AATGAAGATCATTACTAGAATCCATGT
* * * * *
1110550 TTAACTCATTTGAAGGGCATGAACTTAGACTTTA-CTATAATTGGTGGGAAGAAAGCCTTTCTTG
1 TTGACTCATTTG-A-GGCACGAACTTAGAC-TTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTG
* * * * *
1110614 TGAAACCAAAGCATTAGTATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCGAAT-CTCG
63 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-G
* * * *
1110678 AAATGAATGAGGGGATTAGTATGAGTATTTATGTTTGTCTTATTT-CGTGGAAAAACTTTGATTC
127 AAAAGAAT--GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-AGAAAAACTTTGATTC
** * * * *
1110742 TATCAAAAATGGTTGGAAGAAAAGCTTTTCTTGCAACACTAAAGAATCAATGCCATGTATCCTAA
189 TATCAAAAAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAA
* * ** * * * *
1110807 CGAAGGGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAACAGAGACTACTATGAGATTCATTG-T
254 CGAAGAGAATGTGTTTTTGGTT-CCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCT
* *
1110871 TCGCCTAATTTATGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGGTTTTCATGCA
318 T-GCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
* * * * *
1110936 AAAAAAAATCATTAATAT-ATTTATCCTAATGAGGATAATGTGTTTATAGTGCCTAATTACAAAA
382 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* *
1111000 TAAATGAAGATCATTACTAGAATCCTTGT
447 TGAATGAAGATCATTACTAGAATCCATGT
*** * *
1111029 TTGACTCACAAGAGGCACGAACTTAGACTTAGCAAAAATTAGTAGGAAGAAAGCCTTTCTTGAGA
1 TTGACTCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGA
* * * * * ** * * *
1111094 AGCCAAAACGTCAAAATTGTGTATATTTATGAGAATACTATGTTT-TGGAGCCTAATCCT-AAAA
66 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
** * *
1111157 CGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAAAACTTTGATTCTATCAA
131 -GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC-A
* * *
1111222 AAAAAATTTGGAAAAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAAGGAAG
194 AAAAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAAG
*
1111287 AGAATGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCT
259 AGAATGTGTTTTTGGTTC-CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCT
*
1111352 AATTTATA-GGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGA
323 AATTTA-AGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
*
1111416 AAATCATCAATATCATTTATCCTAATGATGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
387 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
*
1111481 GAAGATCATTACTTGAATCCATGT
452 GAAGATCATTACTAGAATCCATGT
* * * * *
1111505 TTGTCTCATTTGAGGCACAAACTTACACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTGTTGCG
1 TTGACTCATTTGAGGCACGAACTTAGAC-TTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCG
* *
1111569 AAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCCTGAAA
65 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* ** * *
1111634 CGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAAAACTTTGATTCTATCAA
130 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAA
* *
1111699 AAAAATTTGGAAAAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAAGA
195 AAAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAAGA
** *
1111764 GAATGTGTTTTTGGCACACAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCTTGCCTA
260 GAATGTGTTTTTGGTTC-CAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTA
1111829 ATTTATA-GGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
324 ATTTA-AGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * *
1111893 AATCATCAATATCATTTATCCTAATGATGAGAATGTGCTTATAGTGCCTAATCACAAAATTAATA
388 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
* *
1111958 AAGATCATTTCTTGAATCCATGT
453 AAGATCATTACTAGAATCCATGT
* * * *
1111981 TTGTCTCATTTGAGGCA-GAAACTTACACTTTAG-AAAAATTGGTGGGAAGAAAGCCTTTGTTGC
1 TTGACTCATTTGAGGCACG-AACTTAGAC-TTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGC
* * * **
1112044 AAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTCTGGTGCCTAATGGTGAA
64 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * ** * * *
1112109 AAGAATGAGGATTAATATGACAATTCTTGTTTGACTTATTTAAGAGACAAACTTTGATTCTATC-
129 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCA
* * * * *
1112173 AAAAAAGGTGGAAAGAAAAGCTTTTC-TAGCTATACAAAAGCATCAATGTCATGTATCCTAATGA
194 AAAAAAGTTGG-AAGAAAAGCTTTTCTTA-CGACACTAAAGCATCAATGTCATGTATCCTAACGA
* * * *
1112237 ATG-GAAAGTGTTCTTGGTTTCCAATCTTGAAAACAATTGAG-C-A-T-C--G-----ATGCTTG
257 A-GAGAATGTGTTTTTGG-TTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTG
* * * * * * * *
1112290 TCATAA-TGAAGGGATGAATTTTGATTTTAAGAAAAATAAGGG-AAAAAAAATATTTCCAT-CAA
320 -CCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTTCATGCAA
* * * *
1112352 AAGAGAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTCTAGTGCCTAATCATCAATA
383 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA-CAAAA
* *** *
1112417 T-CAT--TTTTC-TTACTTGAATCCATGT
447 TGAATGAAGATCATTACTAGAATCCATGT
** * *
1112442 TAAACTCATTTGAGGGGCATGAACTTAGACATTAG-AAAAATTGGTGGGAAGAAAGCCTTTCTTG
1 TTGACTCATTTGA--GGCACGAACTTAGAC-TTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTG
* * * * *
1112506 TGAAACCAAAGCTTCAGTATCGTCTATCCTAACGAGAAGACTATGTTTATGGTGCCTAAT-CTCG
63 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-G
* * * *
1112570 AAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCGTATTTAATG-GAAAAGCGTTGATTCTA
127 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA-GAGAAAAACTTTGATTCTA
** * * * * *
1112634 TCAAAAACGGTTGGAAGAAAAGCTTTTCTTGCGACTCTAAAGCGTCAATGACACGTATCCTAACG
191 TCAAAAAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACG
* * * * * *
1112699 AAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATTGAGACTACTATGAGAATCAATGTTTG
256 AAGAGAATGTGTTTTTGGTT-CCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTG
* * * *
1112764 CCTGATTTAAGGGATAAACTTTAACTTTAAGGAAAATAGGGCAAAGAAAAGATTTACATGCAAAA
320 CCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
* * * *
1112829 GAAAATCATCAATATCATTTATCCTAACGAGGAGCATGTGTTTATAGTGCCTAATTACAAAATGA
385 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGA
* *
1112894 ATGAAGATCATTGCTAGAATCAATGT
450 ATGAAGATCATTACTAGAATCCATGT
* * ** *
1112920 TTGACAT-ATTAGAGGCACGAACTTAGACTTAGCAAAAGTTAGAAGCAAGAAAGCCTTTCTTGCG
1 TTGAC-TCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCG
* * * * * * *
1112984 ACACCAAAGCATCAATATCGTGTATCGTTATGAGAAGACTATGCTTATAGTACTTAATCCTGAAA
65 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * * *
1113049 TGAATGGGGATTAGTTTGAGTATTCATGTTTATCTTATTTAAGAGAAAAACTTTGATTCCATCAA
130 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAA
* * * * *
1113114 AAATAGTTGGAGGAAAAGCTTTTCCTACAACACTAAAGCACCAATGTCATGTATCCT-ACTGAA-
195 AAAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAAC-GAAG
* * * * * * * * *
1113177 AGGAATATGTTTTGGGTTCCCAAACTTGAAAAGAATGAACACTGTTATGAGAATCAACGCTT-AC
259 A-GAATGTGTTTTTGGTT-CCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCC
* *
1113241 AATATTTAAGGGATGAAC-------TT--------T-------------GATTTTCATGCAAAAG
322 TA-ATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAG
* * * **
1113278 AAAATCATCAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTTCCTAATTGCAAAACT-A
386 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA-TGA
* * *
1113342 ATGAAGATCATTACTAGAATTCGTAT
450 ATGAAGATCATTACTAGAATCCATGT
* * * * * * *
1113368 TTGACACATTAGAGACATGATCTTAGACTTAGTAAAAATTAGCT-GGAAAAAAGCCTTTCTTGCG
1 TTGACTCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAG-TGGGAAGAAAGCCTTTCTTGCG
* * * *
1113432 AAACCAAAGAATCAATATCGTGTATCTTTATGAGAAGACTATGGTTATGGTGCCTAAT-CTGGAA
65 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAA
* * *
1113496 ATGAATGGGGATTAGTTTGAGTATTCATATTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCA
129 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCA
* ** *
1113561 AAAAACAGTTGGAAGAAAAGCTTTTTCTTACGACACTAAAGCATCCATGTTTTGTATTCTAACGA
194 AAAAA-AGTTGGAAGAAAAGC-TTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGA
* * * * * *
1113626 A-AGGAATGTGTTTTTGGTTCTAGTCTTGAAAAGAATGGAGACTGTTATGAGAATGAATGCCTGC
257 AGA-GAATGTGTTTTTGGTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGC
* * * *
1113690 CTTATTAAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTTCATGCAAAAG
321 CTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAG
* *
1113755 AAAATCATCAATATCATTTATCCTATTGACGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA
386 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA
* *
1113820 TGAAGATCATTACTTGAATCCATAT
451 TGAAGATCATTACTAGAATCCATGT
* * * * ** *
1113845 TTGTCTCATTTGAGGCACAAACTTACACTTTA-CAAAAATTGGTGGGAAGAAAGGTTTTTTTG-G
1 TTGACTCATTTGAGGCACGAACTTAGAC-TTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCG
** * * * **
1113908 AAAACCAAAGCATCAATATTATCTATCCTAATGAGAAAACTATGTTT-TCGGTGCCAAATGGTGA
65 -AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTAT-GGTGCCTAATCCTGA
* * * ** * * *
1113972 AAAGAATGAGGATTAATACGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTC
128 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC
* * * * * * *
1114037 -AAAAATGGTGGAAAGAAAAGCTTTTC-CAGCGACACAAAAACGTCAATGTCATGTATCCTAATG
193 AAAAAAAGTTGG-AAGAAAAGCTTTTCTTA-CGACACTAAAGCATCAATGTCATGTATCCTAACG
* * * * * **
1114100 AATG-GAAAGCGTTCTTGATTTCCAATCTTGAAAAGAATGGAGAC-AGTTAGGAGAATCGTTGCT
256 AA-GAGAATGTGTTTTTG-GTTCCAATCTTGAAAAGAATGGAGACTA-TTACGAGAATCAATGCT
** * * * * *
1114163 TATCTTATTTAAGGGATAAATTTTGAGTTTT-AGGAAACTAGGGCAAAGAAGAGAATTTCATGCA
318 TGCCTAATTTAAGGGATAAACTTTGA-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
* * * * * *
1114227 AAAGAAAATCATCAATATCATTTATTCTAGTGAGGTGCATGTGTTTA-AGTGCCTAATTACAAAA
382 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
1114291 TGAATGAAGATCATTACTAGAATCCATGT
447 TGAATGAAGATCATTACTAGAATCCATGT
* * * * * *
1114320 TTGACTAATTAGAGGCACGAACTTAGACTTAGCAAAAATTAGTAGCAAAAAAGCCTTTCTTGAGA
1 TTGACTCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGA
** * * *
1114385 AACCAAAGTGTCAGTATCATGTA-CCGTAATGAGAAGACTATGTTTATGGTGCCTAATACTGAAA
66 AACCAAAGCATCAATATCGTGTATCC-TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * * *
1114449 AGAATGGGGATTAATATGACTATTCTTGTTTGTCTTATTTAAGA-AACAAACTTTGATTCTA-CC
130 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAA-AAACTTTGATTCTATCA
** * * * *
1114512 AAAACTGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGAA
194 AAAAAAGTTGG-AAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAA
* * * * *
1114577 -AGAAAAGTGTTCTTGGTTTCCAATCTTCAAAACAATTGAG-C-A-T-C--G-AT--A--CTTGT
258 GAG-AATGTGTTTTTGG-TTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTG-
* ** * * * * *
1114630 CATAA-CGAAAGGATGAA-TTTGATTTTAAGAAAAATAAGGG-AAA-AAAATATTTCCAT-CAAC
320 CCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTTCATGCAA-
* * * * *
1114690 AA-AAAATCATCATTATCATTTATCCTAAAGAGGAGAATGTGCTTCTAGTGCCCAATCATCAATA
383 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA-CAAAA
* ** * *
1114754 T-CAT--TTATCTTTACTTGAATCCATGT
447 TGAATGAAGATCATTACTAGAATCCATGT
** * * * *
1114780 TAAACTCATTTAAGGGGCATGAACTTAGACATTA-CAAAAATTGGTGGGAAAAAAGCCTTTCTTG
1 TTGACTCATTT--GAGGCACGAACTTAGAC-TTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTG
* * * * *
1114844 TGAAACCAAAGCATCAGTATCGTCTATCCTAATGAAAAGACTATGTTTATGGTACCTAAT-CTCG
63 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-G
* * *
1114908 AAAAGAATGGGGATTAGTATGAGTATTTAGGTTTGTCTTATTTAATG-GAAAAACGTTGATTCTA
127 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA-GAGAAAAACTTTGATTCTA
** * * * * *
1114972 TCAAAAACGGTTGGAAGAAAAGCTTTTCTTGCGACTCTAAAGCGTCAATGCCACGTATCCTAACG
191 TCAAAAAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACG
* * * * * * **
1115037 AAGGGAATGTGTTTTTAGTTCCTAATCTTAAAAAGAATGGAGAC-AGCTATGAGAATTAATATTT
256 AAGAGAATGTGTTTTTGGTTCC-AATCTTGAAAAGAATGGAGACTA-TTACGAGAATCAATGCTT
* * *
1115101 GCCTAATTTAAGGGATAAACTTTAACTTTAAGGAAAATAGGGCAAAGAAAAGATTTACATGCAAA
319 GCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
* * * * *
1115166 AGAAAATCATTAATATCATTTATCCTAACGAGGAGCATGTGTTTATAGTGCCTAATTACAAAATG
384 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
* *
1115231 AATGAAGATCATTGCTAGAATCAATGT
449 AATGAAGATCATTACTAGAATCCATGT
* * ** * *
1115258 TTGACAT-ATTCGAGGCACGAACTTAGACTTAGCAAAATTTAGAAGCAAGAAAGCCTTTCTTGTG
1 TTGAC-TCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCG
* * * *
1115322 ATACCAAAGCATCAATATCTTGTATCGTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
65 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * *
1115387 TGAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTATATCAA
130 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAA
* * * * * *
1115452 AAACAGTTGGAGGAAAAGCTTTTCTTGCGACACTAAAGC-GCTAATGTCATATATCCT-ACTAA-
195 AAAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATC-AATGTCATGTATCCTAACGAAG
* * * * *
1115514 AGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAACACTGTTACGAGAATCAACGCTTACC
259 A-GAATGTGTTTTTGGTT-CCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCC
* * *
1115579 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-------TG----G--------GC-AAAGA
322 TAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
1115624 AAATCATCAATATCATTTATCCTAATGA-G-G-A---GCTTATAGTGCCTAATCACAAAATGAAT
387 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* *
1115683 GAAGATCTTTACTAGAATCCAAGT
452 GAAGATCATTACTAGAATCCATGT
* * * * * * *
1115707 TTGTA-TCATTTAAGGCACAAACTTAGACGTAGAAAAAATTAGTAGCAAGAAAGCCTTTCTTGAG
1 TTG-ACTCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCG
** * * * * *
1115771 AAACCAAAGTGTCAATGTCATGTATCCTAATGAGAAGAATATGTTTACGGTGCCTAATCTTGAAA
65 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * * * * *
1115836 AGAATGGGGATTAATATGAATATTCATATTTGTTTTATTTAAGAGATAAACTTTGATTCTA-CCA
130 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAA
* * * ** * *
1115900 AAAATGGTGGAAAGAAAAACTTTTCTTACGACAAAAAAGCATCAATGTCATGCATCCT-A--ATG
195 AAAAAGTTGG-AAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAAG
* * * * *
1115962 A-AA-GTGTTCTTGGTGTCCAA-CTTGAAAAGAATGGGGACTATTACAAGAATCGATGCTTGTCA
259 AGAATGTGTTTTTGGT-TCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTG-CC
* * * * * *
1116024 TAA-TGAAGGGATGAATTTTGGTTTTAAGGAAAATGGGGC-AA-AAAAG-TTTTCCATGCAATAG
322 TAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAG
* * * * * *
1116085 AAAATCATCAACAACATTTGTCCTAATGAGGAGAATGTGCTTCTAGTGCTTAGTCACAAAATGAA
386 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA
* *
1116150 TGAAGATCATTGCTTGAATCCATGT
451 TGAAGATCATTACTAGAATCCATGT
* ** *
1116175 TTGTCTCATTTGA-GCACGAACAAAGACTTTA-CAAAAATTAGTGGGAAGAAAGCCTTTCTTGTG
1 TTGACTCATTTGAGGCACGAACTTAGAC-TTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCG
* * * * * * * * *
1116238 AAACCAAAGCATGAGTATCGTCTATCCTAACGAAAAGGCTATATTTATGGTTCCTAATCCCGAAA
65 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * * * *
1116303 AGAATGGGAATCAGTATGAGTATTTATGTTTGTCTTATTCAATAGAAAAACTTTGATTCTAT-AA
130 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAA
* * * * * *
1116367 AAAACGGTTGGAAGAAAAGCTTTTCTTGCAACACTAAAGCATCAATATCATGAATCGTAACGAAG
195 AAAA-AGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAAG
* * * * *
1116432 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAAACTGTTACGAGAATCAATGCTTGACT
259 AGAATGTGTTTTTGGTT-CCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCT
* * * * * * *
1116497 AATTGAAGAGACAAACTTTGATTTTAAAGAAAATAAGGCAAGGAAAAGATTTTCATGCATAAGAA
323 AATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * * * *
1116562 AATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATCGCTG-TTAATTACAAAATGAAT
388 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAG-TGCCTAATCACAAAATGAAT
* * *
1116626 GAAAATCATTACTAGAATTCATAT
452 GAAGATCATTACTAGAATCCATGT
* *
1116650 TTGACTCATTAGAGGCACGAACTTAGACTTAGCAAAAATTAGTAGGGAA-AAAGCCATTCTTGCG
1 TTGACTCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGT-GGGAAGAAAGCCTTTCTTGCG
* * * * *
1116714 AGACCAAAGCGTCAATATCGTGTATCTTTATGTGAAGACTATGTTTATGGTGCCTAAT-CTGGAA
65 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAA
* * *
1116778 AAGAATGGGGATTAGTTTAAGTATTCATGTTTATCTTATTTAAGAGAAAAACTTTGATTCTATCA
129 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCA
* ** *
1116843 AAAATAGTTGGAAGAAAAGCTTTTCGTTACGACACTAAAGCATCCTTGTCATATATCCTAACGAA
194 AAAAAAGTTGGAAGAAAAGCTTTTC-TTACGACACTAAAGCATCAATGTCATGTATCCTAACGAA
* * * ** * * *
1116908 -AGGAATGTGTTTTTGGTTCTAATCTTGAAAAGAATAGAGACTGTTTTGAGGATCAATACCTGCC
258 GA-GAATGTGTTTTTGGTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCC
* * * * *
1116972 TTATTAAAGGGATGAACTTTGATTTTAAGGTAAATAGGGCAAAGAAAAGATTTTCATGCAAATGA
322 TAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
*
1117037 AAATCATCAATATCATTTATCCTAATGACGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
387 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
*
1117102 GAAGATCATTACTTGAATCCATGT
452 GAAGATCATTACTAGAATCCATGT
*
1117126 TTGTCTCATT
1 TTGACTCATT
1117136 ACAAAAGCAT
Statistics
Matches: 5459, Mismatches: 884, Indels: 473
0.80 0.13 0.07
Matches are distributed among these distances:
444 59 0.01
445 17 0.00
446 3 0.00
447 3 0.00
448 277 0.05
449 308 0.06
450 53 0.01
451 2 0.00
452 1 0.00
453 2 0.00
454 1 0.00
455 31 0.01
456 4 0.00
460 25 0.00
461 72 0.01
462 281 0.05
463 276 0.05
464 93 0.02
465 147 0.03
466 18 0.00
467 297 0.05
468 79 0.01
469 7 0.00
470 4 0.00
471 4 0.00
472 23 0.00
473 85 0.02
474 131 0.02
475 800 0.15
476 1694 0.31
477 474 0.09
478 99 0.02
479 89 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TTGACTCATTTGAGGCACGAACTTAGACTTAGCAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGA
AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAA
AAAAGTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTCATGTATCCTAACGAAGAG
AATGTGTTTTTGGTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTAAT
TTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
CATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGT
Found at i:1118195 original size:159 final size:159
Alignment explanation
Indices: 1118011--1118743 Score: 389
Period size: 159 Copynumber: 4.6 Consensus size: 159
1118001 TCTTATTTGA
* * **
1118011 GAGAAAAACTTTGATTCTATCAAAAAAATTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATC
1 GAGATAAACTTTGATTTTAAGAAAAAAATTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATC
* *
1118076 AATGTCATGTATCCTAACGAAGAGAATGTGTTTTTGGTACATAATCTTGAAAAGAATGGAGACTA
66 AATATCATGTATCCTAATGAAGAGAATGTGTTTTTGGTACATAATCTTGAAAAGAATGGAGACTA
1118141 TTACGAGAATCAATGCTTGCCTAATTTAT
131 TTACGAGAATCAATGCTTGCCTAATTTAT
* * ** * * * ** *
1118170 GGGATAAACTTTGATTTTAAGAAAAATAGGTGAAAGAAAAGATTTTC--ATGCAAAAGAAAATCA
1 GAGATAAACTTTGATTTTAAGAAAAAAATTTGGAAGAAAAGCTTTTCTTATG--ACACTAAAGCA
* * * * * * * *
1118233 TCAATACCATTTATCCTAAT-AAGGAGAATGCGTTTATAGTTCCTAAT-TACGAAACA-AAT-GA
64 TCAATATCATGTATCCTAATGAA-GAGAATGTGTTTTTGGTACATAATCT-TGAAA-AGAATGGA
* * * * * *
1118294 AAATCATTACTAGAATTCATAT--TTGAC-ACATTAAA
126 GACT-ATTACGAGAA-TCA-ATGCTTGCCTA-ATTTAT
* ** * * * * *
1118329 GACACGAACTTAGA-CTT-AG-CAAAAATTAGTAGGAAG-AAAGCCTTTCTTGA-GA-AGCCAAA
1 GAGATAAACTTTGATTTTAAGAAAAAAATT--T-GGAAGAAAAGCTTTTCTT-ATGACA-CTAAA
* ** ** * * * * *
1118388 GCGTCAATATTGTGTATATTTATG-AGAAGACTATGTTTGTGG-AGCCTAATCTT-AAAACGAAT
61 GCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTTTGGTA-CATAATCTTGAAAA-GAA-
* * * * * * *
1118450 TTG-GATTAGTT-TGAGTATTC-ATGTTTGTCTTATTTGA-
122 TGGAGACTA-TTACGAG-AATCAATGCTTGCCTAATTT-AT
* * ** *
1118487 GAGAAAAACTTTGATTCTATCAAAAAAATTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATC
1 GAGATAAACTTTGATTTTAAGAAAAAAATTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATC
* * * *
1118552 AATGTCATGTATCCTAATGAAAAGAACGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTA
66 AATATCATGTATCCTAATGAAGAGAATGTGTTTTTGGTACATAATCTTGAAAAGAATGGAGACTA
1118617 TTACGAGAATCAATGCTTGCCTAATTTAT
131 TTACGAGAATCAATGCTTGCCTAATTTAT
* * ** * * ** * ** *
1118646 GGGATAAACTTTGATTTTAAG--CAAAATAGGGCAAAGAAAAGATTTTCATACAAAAGAAAATCA
1 GAGATAAACTTTGATTTTAAGAAAAAAATTTGG--AAGAAAAGCTTTTCTTATGACACTAAAGCA
* *
1118709 TCAATATCATTTATCCTAATGAGGAGAATGTGTTT
64 TCAATATCATGTATCCTAATGAAGAGAATGTGTTT
1118744 ATAGTTCCTA
Statistics
Matches: 408, Mismatches: 121, Indels: 90
0.66 0.20 0.15
Matches are distributed among these distances:
156 7 0.02
157 17 0.04
158 92 0.23
159 269 0.66
160 13 0.03
161 10 0.02
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (159 bp):
GAGATAAACTTTGATTTTAAGAAAAAAATTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATC
AATATCATGTATCCTAATGAAGAGAATGTGTTTTTGGTACATAATCTTGAAAAGAATGGAGACTA
TTACGAGAATCAATGCTTGCCTAATTTAT
Found at i:1118459 original size:476 final size:475
Alignment explanation
Indices: 1117228--1119670 Score: 2675
Period size: 476 Copynumber: 5.2 Consensus size: 475
1117218 TGTCATAATG
* * * * *
1117228 AAGGGATGAATTTTCATTTTAAGAAAAATAAGGGAAA-AAAAGATTTCCATGCAAAAGAAAATCG
1 AAGGGATAAACTTTGATTTTAAGAAAAAT-AGGGAAAGAAAAGATTTTCATGCAAAAGAAAATCA
* * * * * * **
1117292 TCAATATCGTTTATCCTAAAGAGGAGAATGTGCTTCTAGTGCATAATCACAAAATGAATGAAGAT
65 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACAAATGAAGAT
* * * * * ** * * * *
1117357 CTTTACTTGAATCCATGTTTAACTCATTTGAGGGGCATGAACTTAGACTTTA-TAAAAATTGGT-
130 CATTACTAGAATCCATATTTGACACA-TT-AAAGACACGAACTTAGAC-TTAGCAAAAATTAGTA
* * * ** *
1117420 GAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAGTATCGTCTATCCTAATGAGAAGACTATGT
192 G-GAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATATTTATGAGAAGACTATGT
* * * *
1117485 TTATGGTG-C----C---AAAC---TTT-GATTAGTATGAGTATTTATGTTTGTCTTATTTAATG
256 TTATGGAGCCTAATCTTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGA-G
* * **
1117538 -GAAAAACTTTGATTATATCAAGAACGGTTGGAAGAAAAGCTTTTCTT-TCGACACTAAAGCATC
320 AGAAAAACTTTGATTCTATCAAAAAAAGTTGGAAGAAAAGCTTTTCTTAT-GACACTAAAGCATC
* ** * * * * *
1117601 AATGCCATGTATCCTAACGAAGGGAATGTGTTTTTAGTTTC-CAATCTTAAAAAGAATAGAGATT
384 AATGTCATGTATCCTAACGAAAAGAATGTGTTTTT-GGTACACAATCTTGAAAAGAATGGAGACT
** * *
1117665 GCT-CTGAGCATCAATGTTTGCCTAATTT
448 ATTAC-GAGAATCAATGCTTGCCTAATTT
* * *
1117693 AAGGGATAAACTCTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA
1 AAGGGATAAACTTTGATTTTAAGAAAAAT-AGGGAAAGAAAAGATTTTCATGCAAAAGAAAATCA
* *
1117758 TTAATAT-ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATAAATGAAGAT
65 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACAAATGAAGAT
* * * * * * *
1117822 CATTACTAGAATCCTTGTTTGACTCACTAAAGGCATGAACTTAGACTTAGCAAATATTAGTAGGA
130 CATTACTAGAATCCATATTTGACACATTAAAGACACGAACTTAGACTTAGCAAAAATTAGTAGGA
* * *
1117887 AGAAAGCCTTTCTTGAGAAGCCAAAGCGTCAATATTGTGTATATTTATGAGAAGACTATGTTTAT
195 AGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATATTTATGAGAAGACTATGTTTAT
*
1117952 GGAGCCTAATCCTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAA
260 GGAGCCTAATCTTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAA
*
1118017 AACTTTGATTCTATCAAAAAAATTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATCAATGTC
325 AACTTTGATTCTATCAAAAAAAGTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATCAATGTC
* *
1118082 ATGTATCCTAACGAAGAGAATGTGTTTTTGGTACATAATCTTGAAAAGAATGGAGACTATTACGA
390 ATGTATCCTAACGAAAAGAATGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTATTACGA
1118147 GAATCAATGCTTGCCTAATTT
455 GAATCAATGCTTGCCTAATTT
*
1118168 ATGGGATAAACTTTGATTTTAAGAAAAATAGGTGAAAGAAAAGATTTTCATGCAAAAGAAAATCA
1 AAGGGATAAACTTTGATTTTAAGAAAAATAGG-GAAAGAAAAGATTTTCATGCAAAAGAAAATCA
* * * * * *
1118233 TCAATACCATTTATCCTAATAAGGAGAATGCGTTTATAGTTCCTAATTACGAAACAAATGAAAAT
65 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACAAATGAAGAT
*
1118298 CATTACTAGAATTCATATTTGACACATTAAAGACACGAACTTAGACTTAGCAAAAATTAGTAGGA
130 CATTACTAGAATCCATATTTGACACATTAAAGACACGAACTTAGACTTAGCAAAAATTAGTAGGA
* * * *
1118363 AGAAAGCCTTTCTTGAGAAGCCAAAGCGTCAATATTGTGTATATTTATGAGAAGACTATGTTTGT
195 AGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATATTTATGAGAAGACTATGTTTAT
1118428 GGAGCCTAATCTTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAA
260 GGAGCCTAATCTTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAA
* *
1118493 AACTTTGATTCTATCAAAAAAATTTGGAAGAAAAGCTTTTCTTACGACACTAAAGCATCAATGTC
325 AACTTTGATTCTATCAAAAAAAGTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATCAATGTC
* *
1118558 ATGTATCCTAATGAAAAGAACGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTATTACGA
390 ATGTATCCTAACGAAAAGAATGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTATTACGA
1118623 GAATCAATGCTTGCCTAATTT
455 GAATCAATGCTTGCCTAATTT
* * *
1118644 ATGGGATAAACTTTGATTTTAAGCAAAATAGGGCAAAGAAAAGATTTTCATACAAAAGAAAATCA
1 AAGGGATAAACTTTGATTTTAAGAAAAATAGGG-AAAGAAAAGATTTTCATGCAAAAGAAAATCA
* *
1118709 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTTCCTAATTACAAAACGAATGAAGAT
65 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACAAATGAAGAT
* *
1118774 CATTACTAGAATTCATATTTGACACATTAAAGACACGAACTTAGACTTAGTAAAAATTAGTAGGA
130 CATTACTAGAATCCATATTTGACACATTAAAGACACGAACTTAGACTTAGCAAAAATTAGTAGGA
* * * *
1118839 AAAAAGGCTTTCATGCA-AAACCAAAGCATCAATATCGTGTATTTTTATGAGAAGACTATGTTTA
195 AGAAAGCCTTTCTTG-AGAAACCAAAGCATCAATATCGTGTATATTTATGAGAAGACTATGTTTA
* ** * **
1118903 TGGTGCCTAATCTGGAAATGAATGGGGATTAGTTTGAGTATTCATGTTTG-------T-AGAGAA
259 TGGAGCCTAATCTTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAA
* * * *
1118960 AAACTTTGACTCTATCAAAAACAGTTGAAAGAAAAGCTTTTTCTTATGACACTAAAGCATCCATG
324 AAACTTTGATTCTATCAAAAAAAGTTGGAAGAAAAGC-TTTTCTTATGACACTAAAGCATCAATG
* * *
1119025 TCATGTATCCTAAC-AAAAGGAATGTGTTTTTGGTTCA-AATCTTGAAAAGCATGGAGACTGTTA
388 TCATGTATCCTAACGAAAA-GAATGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTATTA
* *
1119088 CGAAAATCAATGCTTGCCTTATTT
452 CGAGAATCAATGCTTGCCTAATTT
* *
1119112 AAGGGAAAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA
1 AAGGGATAAACTTTGATTTTAAGAAAAATAGGG-AAAGAAAAGATTTTCATGCAAAAGAAAATCA
* * * * ** *
1119177 TCAATATCATTTACCCTAATGATGAGAATGTGCTTATAGTGCCTAATCACAAAATGAGTGAAGAT
65 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACAAATGAAGAT
* * * * * * ** * * * * * *
1119242 CATTGCTTGAATCTATATTTGTCTCTTTTGAGGCACCAGCTTACACTTTA-CAAAAATTGGTGGG
130 CATTACTAGAATCCATATTTGACACATTAAAGACACGAACTTAGAC-TTAGCAAAAATTAGTAGG
** * ** ** * *
1119306 AAGAAAGCCTTTGC-TGCA-AAAATAAAGCAT-TA-ATCGCCTATCCTAATAAGAAGACTATGTT
194 AAGAAAGCCTTT-CTTG-AGAAACCAAAGCATCAATATCGTGTATATTTATGAGAAGACTATGTT
* * * * * ** * * * ** * * * *
1119367 TTTGGTGCCAAATGGTGAAAA-GAATGAGGACTAATATGACAATTCTTGTTTATCTTATTTAAGG
257 TATGGAGCCTAAT-CTTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGA
* * * * * *
1119431 GACAAACTTTGATTCTGTC-AAAAATGGTGGAAAAAAAAGCTTTT-TCTAGTGACACAAAAGCAT
321 GAAAAACTTTGATTCTATCAAAAAAAGTTGG-AAGAAAAGCTTTTCT-TA-TGACACTAAAGCAT
* * ** * * *
1119494 CAATGCCATGTATCCTAATGAATGGAAAGTGTTCTTGGTTTC-CAATCTTGAAAAGAATGGAGA-
383 CAATGTCATGTATCCTAACGAAAAGAATGTGTTTTTGG-TACACAATCTTGAAAAGAATGGAGAC
* * * * *
1119557 TAGTTAGGAAAAT-AGTTGCTTGTCTTATTT
447 TA-TTACGAGAATCA-ATGCTTGCCTAATTT
* * * * * * * *
1119587 AAGGGATAAATTTTTATTTTTAGGAAAATAGGGCAAAGAATAGAATTTCATGCAAAAAAAAATCG
1 AAGGGATAAACTTTGATTTTAAGAAAAATAGGG-AAAGAAAAGATTTTCATGCAAAAGAAAATCA
*
1119652 TCAATATCATTTATTCTAA
65 TCAATATCATTTATCCTAA
1119671 GGAATAAATT
Statistics
Matches: 1733, Mismatches: 201, Indels: 78
0.86 0.10 0.04
Matches are distributed among these distances:
462 3 0.00
463 85 0.05
464 3 0.00
465 103 0.06
466 88 0.05
467 6 0.00
468 277 0.16
469 59 0.03
471 4 0.00
472 1 0.00
473 14 0.01
474 79 0.05
475 344 0.20
476 666 0.38
477 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.32
Consensus pattern (475 bp):
AAGGGATAAACTTTGATTTTAAGAAAAATAGGGAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACAAATGAAGATC
ATTACTAGAATCCATATTTGACACATTAAAGACACGAACTTAGACTTAGCAAAAATTAGTAGGAA
GAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATATTTATGAGAAGACTATGTTTATG
GAGCCTAATCTTAAAACGAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAAA
ACTTTGATTCTATCAAAAAAAGTTGGAAGAAAAGCTTTTCTTATGACACTAAAGCATCAATGTCA
TGTATCCTAACGAAAAGAATGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTATTACGAG
AATCAATGCTTGCCTAATTT
Found at i:1120590 original size:13 final size:13
Alignment explanation
Indices: 1120572--1120598 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1120562 ACATGCTGCT
1120572 TTGTATCGATACA
1 TTGTATCGATACA
1120585 TTGTATCGATACA
1 TTGTATCGATACA
1120598 T
1 T
1120599 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1120595 original size:33 final size:32
Alignment explanation
Indices: 1120553--1120617 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
1120543 CACACCCAGA
*
1120553 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATG-TGCATTGTATCGATACAT
*
1120586 TGTATCGATACATGTTCATTGTATCGATACAT
1 TGTATCGATACATGTGCATTGTATCGATACAT
1120618 GGACAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGTGCATTGTATCGATACAT
Found at i:1120628 original size:20 final size:19
Alignment explanation
Indices: 1120582--1120638 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
1120572 TTGTATCGAT
*
1120582 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
1120601 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
1120620 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1120639 AAACTGGTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:1129291 original size:13 final size:13
Alignment explanation
Indices: 1129273--1129299 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1129263 ACATGCTGCT
1129273 TTGTATCGATACA
1 TTGTATCGATACA
1129286 TTGTATCGATACA
1 TTGTATCGATACA
1129299 T
1 T
1129300 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1129296 original size:33 final size:32
Alignment explanation
Indices: 1129254--1129318 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
1129244 CACACCCAGA
*
1129254 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATG-TGCATTGTATCGATACAT
*
1129287 TGTATCGATACATGTTCATTGTATCGATACAT
1 TGTATCGATACATGTGCATTGTATCGATACAT
1129319 GGACAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGTGCATTGTATCGATACAT
Found at i:1129329 original size:20 final size:19
Alignment explanation
Indices: 1129283--1129339 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
1129273 TTGTATCGAT
*
1129283 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
1129302 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
1129321 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1129340 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:1129394 original size:20 final size:19
Alignment explanation
Indices: 1129369--1129421 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
1129359 TATCATTATT
1129369 TGTATCGATACATG-GTACAA
1 TGTATCGATACATGAG-A-AA
1129389 TGTATCGATACATGAAGAAA
1 TGTATCGATACATG-AGAAA
1129409 TGTATCGATACAT
1 TGTATCGATACAT
1129422 AGCTTGTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 29 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (19 bp):
TGTATCGATACATGAGAAA
Found at i:1129750 original size:19 final size:19
Alignment explanation
Indices: 1129726--1129793 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1129716 AATTCAACAA
1129726 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1129745 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1129760 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1129777 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1129794 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1129765 original size:13 final size:13
Alignment explanation
Indices: 1129747--1129771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1129737 ACATAAGTTT
1129747 TGTATCGATACAA
1 TGTATCGATACAA
1129760 TGTATCGATACA
1 TGTATCGATACA
1129772 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1129769 original size:32 final size:32
Alignment explanation
Indices: 1129728--1129790 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1129718 TTCAACAATT
*
1129728 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1129760 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1129791 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1129838 original size:20 final size:20
Alignment explanation
Indices: 1129813--1129867 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1129803 GCCAAGGAAA
*
1129813 TGTATCGATACATTTTTCTG
1 TGTATCGATACATTTATCTG
** *
1129833 TGTATCGATACATGGATCTT
1 TGTATCGATACATTTATCTG
1129853 TGTATCGATACATTT
1 TGTATCGATACATTT
1129868 GGAAATTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTTATCTG
Found at i:1132346 original size:27 final size:28
Alignment explanation
Indices: 1132312--1132387 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 28
1132302 TTTCTTCACA
1132312 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
* * *
1132339 ATCGGGGATACTCCAACTCTGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
1132367 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1132388 GTTTTATCGC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:1132455 original size:52 final size:52
Alignment explanation
Indices: 1132203--1132540 Score: 196
Period size: 52 Copynumber: 6.4 Consensus size: 52
1132193 CTCAATTCTC
* * * * *
1132203 CACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAATTTTCT
1 CACAATCGGGGATACTCCAAC-CCGGTTTTATTTCCAAAAACACCAATTTTTT
* * * * *
1132255 -ATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAATACCAATTTCTT
1 CACAATCGGGGATACTCCAAC-CCGGTTTTATTTCC-AAAAACACCAATTTTTT
* * * *** * *
1132308 CACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCCAACTCTGTTATTT
1 CACAATCGGGGATACTCCAACCCGGTTTTAT-TTC-CAAAAACACCAA---T-TT-TTT
* * *
1132366 C-CGA--GGGGATACTCCAACCCCGGTTTTA--TCGCTAAAACACTAATTTTTT
1 CACAATCGGGGATACTCCAA-CCCGGTTTTATTTC-CAAAAACACCAATTTTTT
* *
1132415 CACAATCGGGGATACTCCAATCCCGGTTTTATTTTC-AAAACGCCAATTTTCCTT
1 CACAATCGGGGATACTCCAA-CCCGGTTTTATTTCCAAAAACACCAATTTT--TT
* * *
1132469 --TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAA-TTTTT
1 CACAATCGGGGATACTCCAAC-CCGGTTTTATTTCCAAAAACACCAATTTTTT
* *
1132519 CACAATCGAGGATACTCTAACC
1 CACAATCGGGGATACTCCAACC
1132541 TCGTTATTTC
Statistics
Matches: 220, Mismatches: 43, Indels: 47
0.71 0.14 0.15
Matches are distributed among these distances:
49 4 0.02
50 6 0.03
51 34 0.15
52 87 0.40
53 31 0.14
54 30 0.14
55 13 0.06
56 5 0.02
57 7 0.03
58 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (52 bp):
CACAATCGGGGATACTCCAACCCGGTTTTATTTCCAAAAACACCAATTTTTT
Found at i:1132582 original size:212 final size:212
Alignment explanation
Indices: 1132203--1132604 Score: 621
Period size: 212 Copynumber: 1.9 Consensus size: 212
1132193 CTCAATTCTC
* *
1132203 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATA
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
* *
1132268 CTCTAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGGGGATACTCCAACCCCG
66 CTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGAGGATACTCCAACCCCG
* * * *
1132333 TTAATCATCGGGGATACTCCAACTCTGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATCGC
131 TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTTATCGC
1132398 TAAAACACTAATTTTTT
196 TAAAACACTAATTTTTT
* * *
1132415 CACAATCGGGGATACTCCAA-TCCCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 CACAATCGGGGATACTCCAACT-CCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGA
* *
1132479 TACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCTAACCT
64 TACTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
1132542 CGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAATCCCGATTTT
129 CGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTT
1132605 TTTTTTCTTC
Statistics
Matches: 172, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
211 28 0.16
212 109 0.63
213 35 0.20
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (212 bp):
CACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGAGGATACTCCAACCCCG
TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTTATCGC
TAAAACACTAATTTTTT
Found at i:1145097 original size:10 final size:10
Alignment explanation
Indices: 1145082--1145150 Score: 106
Period size: 10 Copynumber: 6.9 Consensus size: 10
1145072 TCTTTTTCAA
1145082 AAAAAAAAAC
1 AAAAAAAAAC
1145092 AAAAAAAAA-
1 AAAAAAAAAC
1145101 ACAAAAAAAAC
1 A-AAAAAAAAC
1145112 AAAAAAAAAC
1 AAAAAAAAAC
1145122 AAAAAAAAA-
1 AAAAAAAAAC
1145131 AAAAACAAAAC
1 AAAAA-AAAAC
1145142 AAAAAAAAA
1 AAAAAAAAA
1145151 GGAGAAAAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
9 6 0.11
10 43 0.78
11 6 0.11
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:1145108 original size:20 final size:20
Alignment explanation
Indices: 1145083--1145149 Score: 111
Period size: 19 Copynumber: 3.4 Consensus size: 20
1145073 CTTTTTCAAA
1145083 AAAAAAAACAAAAAAAAAAC
1 AAAAAAAACAAAAAAAAAAC
1145103 AAAAAAAAC-AAAAAAAAAC
1 AAAAAAAACAAAAAAAAAAC
1145122 AAAAAAAA-AAAAAACAAAAC
1 AAAAAAAACAAAAAA-AAAAC
1145142 AAAAAAAA
1 AAAAAAAA
1145150 AGGAGAAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
19 23 0.51
20 22 0.49
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAAAACAAAAAAAAAAC
Found at i:1145118 original size:30 final size:30
Alignment explanation
Indices: 1145082--1145150 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
1145072 TCTTTTTCAA
1145082 AAAAAAAAACAAAAAAAAAACAAAA-AAAAC
1 AAAAAAAAACAAAAAAAAAA-AAAACAAAAC
1145112 AAAAAAAAACAAAAAAAAAAAAAACAAAAC
1 AAAAAAAAACAAAAAAAAAAAAAACAAAAC
1145142 AAAAAAAAA
1 AAAAAAAAA
1145151 GGAGAAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (30 bp):
AAAAAAAAACAAAAAAAAAAAAAACAAAAC
Found at i:1145159 original size:1 final size:1
Alignment explanation
Indices: 1145080--1145150 Score: 88
Period size: 1 Copynumber: 71.0 Consensus size: 1
1145070 ATTCTTTTTC
* * * * * *
1145080 AAAAAAAAAAACAAAAAAAAAACAAAAAAAACAAAAAAAAACAAAAAAAAAAAAAACAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1145145 AAAAAA
1 AAAAAA
1145151 GGAGAAAAAT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1146238 original size:55 final size:55
Alignment explanation
Indices: 1146154--1146646 Score: 748
Period size: 55 Copynumber: 9.0 Consensus size: 55
1146144 GATGCTTTTT
1146154 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
*
1146209 CCTTTCAAAGCCCACCCAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
* *
1146264 CCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCCCAAAGAGCAGGACA
1 CCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACA
* *
1146319 CCTTTCAAAGCCCACCCAAGTTGGTGGCATTTTCCAGTCCTCAAAGGGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
*
1146374 CCTCTT-AAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCCCAAAGAGCAGGACA
1 CCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACA
*
1146429 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
*
1146484 CCTTTCAAAGCCCACCCAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
* * *
1146539 CCTCTT-AAAGCCCACGCAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACG
1 CCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACA
* * *
1146594 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTT-TACTCCTCAATGAGCAGGA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGA
1146647 TACACTTTAT
Statistics
Matches: 404, Mismatches: 23, Indels: 22
0.90 0.05 0.05
Matches are distributed among these distances:
54 13 0.03
55 375 0.93
56 16 0.04
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (55 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACA
Found at i:1147489 original size:19 final size:19
Alignment explanation
Indices: 1147465--1147532 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1147455 AATTCAACAA
1147465 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1147484 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1147499 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1147516 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1147533 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1147504 original size:13 final size:13
Alignment explanation
Indices: 1147486--1147510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1147476 ACATAAGTTT
1147486 TGTATCGATACAA
1 TGTATCGATACAA
1147499 TGTATCGATACA
1 TGTATCGATACA
1147511 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1147508 original size:32 final size:32
Alignment explanation
Indices: 1147467--1147529 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1147457 TTCAACAATT
*
1147467 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1147499 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1147530 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1147577 original size:20 final size:20
Alignment explanation
Indices: 1147552--1147606 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1147542 GCCAAGGAAA
*
1147552 TGTATCGATACATTTTTCTG
1 TGTATCGATACATTTATCTG
** *
1147572 TGTATCGATACATGGATCTT
1 TGTATCGATACATTTATCTG
1147592 TGTATCGATACATTT
1 TGTATCGATACATTT
1147607 GGAAATTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTTATCTG
Found at i:1150083 original size:27 final size:28
Alignment explanation
Indices: 1150049--1150124 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
1150039 TTTCTTCACA
1150049 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
1150076 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
1150104 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1150125 GTTTTATCGC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:1150255 original size:104 final size:104
Alignment explanation
Indices: 1149940--1150275 Score: 283
Period size: 104 Copynumber: 3.2 Consensus size: 104
1149930 CTCAATTCTC
* * * * * *
1149940 CACAATCGGGGATATTCTAACTCCGA-TTTTATTTTCAAAACACTAATTTT-CTATAATCGGGAA
1 CACAATCGGGGATACTCCAA-TCCCAGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
*
1150003 TACTCTAACTCCGATTTTATTTCCAAAAAATACCAATTTCTT
65 TACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TT
* * ** * * * ** * *
1150045 CACAATCGGGGATACTCCAA-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCCG
1 CACAATCGGGGATACTCCAATCCCAGTTTTATTTTC---AAAACACCAATTTTCCTTTA-AT-C-
* * * * *
1150106 AGGGGATACTCCAACCCCGGTTTTA--TCGCTAAAACACTAATTTTTT
60 -GGGGATACTCCAACTCCGATTTTATTTC-CAAAAATACCAA-TTTTT
*
1150152 CACAATCGGGGATACTCCAATCCCAGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGAT
1 CACAATCGGGGATACTCCAATCCCAGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
1150217 ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
66 ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
*
1150256 CACAATCGAGGATACTCCAA
1 CACAATCGGGGATACTCCAA
1150276 CCTCGTTATT
Statistics
Matches: 174, Mismatches: 40, Indels: 35
0.70 0.16 0.14
Matches are distributed among these distances:
103 8 0.05
104 46 0.26
105 30 0.17
106 17 0.10
107 34 0.20
108 13 0.07
109 26 0.15
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (104 bp):
CACAATCGGGGATACTCCAATCCCAGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
ACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
Found at i:1150276 original size:52 final size:52
Alignment explanation
Indices: 1149940--1150276 Score: 176
Period size: 52 Copynumber: 6.4 Consensus size: 52
1149930 CTCAATTCTC
* * * * *
1149940 CACAATCGGGGATATTCTAACTCCGA-TTTTATTTTCAAAACACTAA-TTTT
1 CACAATCGGGGATACTCCAACTCCCAGTTTTATTTCCAAAACACCAATTTTT
* * * * *
1149990 CTATAATCGGGAATACTCTAACTCCGA-TTTTATTTCCAAAAAATACCAATTTCTT
1 C-ACAATCGGGGATACTCCAACTCCCAGTTTTATTTCC--AAAACACCAATTT-TT
* * ** * *
1150045 CACAATCGGGGATACTCCAAC-CCC-G-TTAATCATCGGGGATACTCCAACCCCGTTATTT
1 CACAATCGGGGATACTCCAACTCCCAGTTTTAT-TTC--CAAAACACCAA-----TT-TTT
* * ** * *
1150103 C-CGA--GGGGATACTCCAAC-CCCGGTTTTATCGCTAAAACACTAATTTTTT
1 CACAATCGGGGATACTCCAACTCCCAGTTTTATTTCCAAAACACCAA-TTTTT
* * *
1150152 CACAATCGGGGATACTCCAA-TCCCAGTTTTATTTTCAAAACGCCAATTTTC
1 CACAATCGGGGATACTCCAACTCCCAGTTTTATTTCCAAAACACCAATTTTT
** * *
1150203 CTTTAATCGGGGATACTCCAACTCCGA-TTTTATTTCCAAAAATACCAATTTTT
1 C-ACAATCGGGGATACTCCAACTCCCAGTTTTATTTCC-AAAACACCAATTTTT
*
1150256 CACAATCGAGGATACTCCAAC
1 CACAATCGGGGATACTCCAAC
1150277 CTCGTTATTT
Statistics
Matches: 217, Mismatches: 46, Indels: 46
0.70 0.15 0.15
Matches are distributed among these distances:
49 4 0.02
50 5 0.02
51 36 0.17
52 78 0.36
53 35 0.16
54 25 0.12
55 20 0.09
56 2 0.01
57 6 0.03
58 5 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
CACAATCGGGGATACTCCAACTCCCAGTTTTATTTCCAAAACACCAATTTTT
Found at i:1150296 original size:28 final size:28
Alignment explanation
Indices: 1150260--1150336 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
1150250 ATTTTTCACA
* * *
1150260 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
1150288 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
1150316 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
1150337 ATTTTTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1150307 original size:212 final size:212
Alignment explanation
Indices: 1149940--1150341 Score: 630
Period size: 212 Copynumber: 1.9 Consensus size: 212
1149930 CTCAATTCTC
* * * *
1149940 CACAATCGGGGATATTCTAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGAATA
1 CACAATCGGGGATACTCCAACTCCCATTTTATTTTCAAAACACCAATTTTCTATAATCGGGAATA
* *
1150005 CTCTAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGGGGATACTCCAACCCCG
66 CTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGAGGATACTCCAACCCCG
* *
1150070 TTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATCGC
131 TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTTATCGC
1150135 TAAAACACTAATTTTTT
196 TAAAACACTAATTTTTT
* * *
1150152 CACAATCGGGGATACTCCAA-TCCCAGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 CACAATCGGGGATACTCCAACTCCCA-TTTTATTTTCAAAACACCAATTTT-CTATAATCGGGAA
*
1150216 TACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAACCT
64 TACTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
1150279 CGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAATCCCGATTTT
129 CGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTT
1150342 TTTTTTCTTC
Statistics
Matches: 173, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
211 32 0.18
212 107 0.62
213 34 0.20
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (212 bp):
CACAATCGGGGATACTCCAACTCCCATTTTATTTTCAAAACACCAATTTTCTATAATCGGGAATA
CTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTCTTCACAATCGAGGATACTCCAACCCCG
TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTTATCGC
TAAAACACTAATTTTTT
Found at i:1153190 original size:13 final size:13
Alignment explanation
Indices: 1153172--1153197 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1153162 TACACAAAGT
1153172 ATGTATCGATACA
1 ATGTATCGATACA
1153185 ATGTATCGATACA
1 ATGTATCGATACA
1153198 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1153197 original size:32 final size:33
Alignment explanation
Indices: 1153156--1153217 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
1153146 GCCAAACTTA
**
1153156 TATCGATACACAAAGTA-TGTATCGATACAATG
1 TATCGATACACAAAAAATTGTATCGATACAATG
1153188 TATCGATACACAAAAAATTGTATCGATACA
1 TATCGATACACAAAAAATTGTATCGATACA
1153218 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.27
Consensus pattern (33 bp):
TATCGATACACAAAAAATTGTATCGATACAATG
Found at i:1156488 original size:211 final size:209
Alignment explanation
Indices: 1156117--1156508 Score: 622
Period size: 211 Copynumber: 1.9 Consensus size: 209
1156107 ACTATTACGA
* *
1156117 GAATCGATGCTTGTCATAATGAAGGGATGAATTTTGGTTTTAAGGAAAATAGGGCAAAAAAGATT
1 GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAGATT
* * * * * *
1156182 TCCATGCAATAGAAAATCATCAACAACATTTCTCCTAATGAGGAGAATGTGCTTCTAGTGCTTAA
66 TCCATGCAAAAGAAAATCATCAACAACATTTATCCTAATGACGAAAATGTGCTTATAGTGCCTAA
*
1156247 TCACAAAATGAATGAAGATCATTGCTTGAATCCATGTGTATCTCATTTGAGGCACGAACATAGTG
131 TCACAAAATGAATGAAGATCATTACTTGAATCCATGTGTATCTCATTTGAGGCACGAACATAGTG
1156312 CTTAATCACAAAAT
196 CTTAATCACAAAAT
1156326 GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGA
1 GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC--AAAAAAGA
* * *
1156391 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGACGAAAATGTGCTTATAGTGCCT
64 TTTCCATGCAAAAGAAAATCATCAACAACATTTATCCTAATGACGAAAATGTGCTTATAGTGCCT
* * * *
1156456 AATCCCAAAATGAATGAAGTTCATTACTTGAATCCATGTTTGTCTCATTTGAG
129 AATCACAAAATGAATGAAGATCATTACTTGAATCCATGTGTATCTCATTTGAG
1156509 ACATAAACTT
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
209 53 0.32
211 112 0.68
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (209 bp):
GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAGATT
TCCATGCAAAAGAAAATCATCAACAACATTTATCCTAATGACGAAAATGTGCTTATAGTGCCTAA
TCACAAAATGAATGAAGATCATTACTTGAATCCATGTGTATCTCATTTGAGGCACGAACATAGTG
CTTAATCACAAAAT
Found at i:1157224 original size:475 final size:474
Alignment explanation
Indices: 1156326--1158669 Score: 2672
Period size: 475 Copynumber: 5.0 Consensus size: 474
1156316 ATCACAAAAT
* * * *
1156326 GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGA
1 GAATCGATGCTTGTCATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * *
1156391 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGACGAAAATGTGCTTATAGTGCCT
66 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
** * * * * * * *
1156456 AATCCCAAAATGAATGAAGTTCATTACTTGAATCCATGTTTGTCTCATTTGAGACATAAACTTAC
131 AATTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGACTCATTAGAGGCATGAACTTAG
* * * *
1156521 ACCTTA-CAAAAATTGGTGGGAAAAAAGCCTTTCTT-ACGAAACCAAAGCATCAATATCGTCTAT
196 A-CTTAGCAAAAATTAGTAGGAAGAAAGCCTTTCTTGA-GAAACCAAAGCATCAATATCGTGTAT
* ** * **
1156584 CCTAATGAGAAGACTATATTTATAATGCCTAATCCTGAAAAGAAT-GAGGATTAGTATGACAATT
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTCAAAAGAATAG-GGATTAGTATGAGTATT
* * * *
1156648 CTTGTTTGTCTTATTTGAGAGACAAACTTTGATTCTGTCAAAAATGGTGGAAAGAAAAGCTTTTC
323 CATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGG-AAGAAAAGCTTTTC
* * * * * * *
1156713 TAGAGACACAAAAGCATCAATGTCATGTATCCTAATGAATGGAAAGTGTTCTTGGTTTCCAATCT
387 TTGCGACACTAAAGCATCAATGTCATGTATCCTAACGAAAGGAATGTGTTTTTGGTTTCCAATCT
1156778 TGAAAAGAATGGACATAGTTAGGA
452 TGAAAAGAATGGACATAGTTA-GA
* * * * * * *
1156802 GAATCGTTGCTTGTCATATTTAAGGTATAAATTTTGATTTTTAGGAAAATAGGGTAAAGTAGAGA
1 GAATCGATGCTTGTCATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * *
1156867 ATTTCATGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGGTGTATGTGTTTAT-GTGCCT
66 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
*
1156931 AATTACAAAATGAATGAAGATCATTACTAGAATGCATGTTTGACTCATTAGAGGCATGAACTTAG
131 AATTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGACTCATTAGAGGCATGAACTTAG
* * ** *
1156996 ACTTAGCAAAAATTAGAAGCAAGAAAGCCTTTCTTGAGAAACCAAAGTGTCAATATCGTGTACCC
196 ACTTAGCAAAAATTAGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATCC
* * * *
1157061 TAATGAGAAGACTATGCTTATGGTGCCTAATCCTCAAAAGAATAGGGATTAATACGACTATTCAT
261 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTCAAAAGAATAGGGATTAGTATGAGTATTCAT
* *
1157126 GTTTGTCTTATTTAAGAGATAAACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGCTTTTCTTG
326 GTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGG-AAGAAAAGCTTTTCTTG
* * * * *
1157191 CGACACAAAAGCATCAATGTCATGTATCCTAATGAAAGAAAAGTGTTCTTGGTTTCCAATC-T-A
390 CGACACTAAAGCATCAATGTCATGTATCCTAACGAAAGGAATGTGTTTTTGGTTTCCAATCTTGA
*
1157254 CAA-AA--G--A-A-TT-GA
455 AAAGAATGGACATAGTTAGA
* * * * * * * *
1157266 GCATTGATGCTTGTCATAATGAGGGGATGAATTTTGATTTTAAGAAAAATAAGGG--AA-AAAAG
1 GAATCGATGCTTGTCATATTTAAGGGATAAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAG
* *
1157328 A-TTTCTATGCAAAAGAAAATCATCAATATCATTTAACCTAAAT-AGGAGAATGTGTTTCTAGTG
65 ATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTG
* * * * * *
1157391 CCTAGTCACAAAATGAATGAAGATCTTTACTTGAATCCATGTTTAACTCATTTGAGGGGCATGAA
128 CCTAATTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGACTCA-TT-AGAGGCATGAA
* * * *
1157456 CTTAGACTTTA-CAAAAATT-GCTAGGAAGAATGCCTTTCTTGTGAAACCAAAGCATCAGTATTG
191 CTTAGAC-TTAGCAAAAATTAG-TAGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCG
* * * *
1157519 TCTATCCTAATGAGAACACTATGTTTATGGTGCCGAAT-CTCGAAAAGAATAGGGATTACTATGA
254 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTC-AAAAGAATAGGGATTAGTATGA
* * *
1157583 GTATTTATGTTTGCCTTATTTAATG-GAAAAACTTTGATTCTATCAAAAACTGTTGGAAGAAAAG
318 GTATTCATGTTTGTCTTATTTAA-GAGAAAAACTTTGATTCTATCAAAAA-TGGTGGAAGAAAAG
* *
1157647 CTTTTCTTGCGACATTAAAGCATCAATGCCATGTATCCTAAC-AAAGGGAATGTGTTTTTGG-TT
381 CTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAACGAAA-GGAATGTGTTTTTGGTTT
*
1157710 CCTAATCTTGAAAAGAATAGAGAC-TACTATA-A
445 CC-AATCTTGAAAAGAAT-G-GACATAGT-TAGA
* * *
1157742 GAATCAATGTTTG-CCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
1 GAATCGATGCTTGTCAT-ATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* *
1157806 ATTTTCATGCAAAATAAAATCATTAATAT-ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
65 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * ** *
1157870 TAATTACAAAATAAATGAAGATCATTACTAGAATCCTTGTTTGACACCCTAGAAGCATGAACTTA
130 TAATTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGACTCATTAGAGGCATGAACTTA
* * * * * *
1157935 GACTTAGCAAAAATTAGTTGGAAGAAAGCTTTTCTTGAGAAGCCAAAGCGTCAATATTGTGTATA
195 GACTTAGCAAAAATTAGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATC
* * * * * ** *
1158000 TTTATGAGAAGACTATGTTTATGGAGTCTAATCCT-AAAACAAATTTGGATTAGTTTGAGTATTC
260 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTCAAAA-GAATAGGGATTAGTATGAGTATTC
* *
1158064 ATGTTTGTCTTATTTGAGAGAAAAACTTTGATTCTATCAAAAAAAT-TTGGAAGAAAAGCTTTTC
324 ATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC--AAAAATGGTGGAAGAAAAGCTTTTC
** *
1158128 TTTTGACACTAAAGCATCAATGTCATGTATCCTAACG-AAGAGAATGTGTTTTTGG-TACACAAT
387 TTGCGACACTAAAGCATCAATGTCATGTATCCTAACGAAAG-GAATGTGTTTTTGGTTTC-CAAT
*
1158191 CTTGAAAAGAATGGAGACT-GTTATGA
450 CTTGAAAAGAATGGACA-TAGTTA-GA
* * * *
1158217 GAATCAATGCTTG-CCTAATTTATGGTATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
1 GAATCGATGCTTGTCAT-ATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * *
1158281 ATTTTCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGCATGTGTTTATAGAGCC
65 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
** * **
1158346 TAATTACAAAATGAATGAAGATCATTACTAGAATTGATGCTTGACAT-ATTAGAGGCACAAACTT
130 TAATTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGAC-TCATTAGAGGCATGAACTT
* * * * * *
1158410 AGACTTAGCAAAACTTAGAAGCAAGAAAGCCTTTCTGGCGAAACCAAAGCATTAATATCGTGTAT
194 AGACTTAGCAAAAATTAGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTAT
* * * * * * * *
1158475 CATTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAATGAATGGGGATTAGTTTCAAGTATT
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTCAAAAGAATAGGGATTAGTAT-GAGTATT
* *
1158540 CATGTTTGTCTTATTTAAGAGAAAAACTTTCATTCTATCAAAAATGGTTGGAGGAAAAGCTTTTC
323 CATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGG-TGGAAGAAAAGCTTTTC
*** * * * * *
1158605 TTATAACACTAAAGCACCAATATCATTTATCCTAACGAAAGGATTGTGTTTTTGGTTCCCAATCT
387 TTGCGACACTAAAGCATCAATGTCATGTATCCTAACGAAAGGAATGTGTTTTTGGTTTCCAATCT
1158670 AGAATACAAG
Statistics
Matches: 1596, Mismatches: 215, Indels: 113
0.83 0.11 0.06
Matches are distributed among these distances:
461 4 0.00
462 48 0.03
463 52 0.03
464 55 0.03
465 220 0.14
466 12 0.01
467 4 0.00
468 3 0.00
470 1 0.00
472 3 0.00
473 7 0.00
474 17 0.01
475 609 0.38
476 337 0.21
477 188 0.12
478 32 0.02
479 4 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
GAATCGATGCTTGTCATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
AATTACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGACTCATTAGAGGCATGAACTTAG
ACTTAGCAAAAATTAGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATCC
TAATGAGAAGACTATGTTTATGGTGCCTAATCCTCAAAAGAATAGGGATTAGTATGAGTATTCAT
GTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAGAAAAGCTTTTCTTGC
GACACTAAAGCATCAATGTCATGTATCCTAACGAAAGGAATGTGTTTTTGGTTTCCAATCTTGAA
AAGAATGGACATAGTTAGA
Found at i:1158149 original size:940 final size:939
Alignment explanation
Indices: 1156326--1158669 Score: 2798
Period size: 940 Copynumber: 2.5 Consensus size: 939
1156316 ATCACAAAAT
1156326 GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGA
1 GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGG--AAAAAAAGA
* * *
1156391 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGACGAAAATGTGCTTATAGTGCCT
64 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * *
1156456 AATCCCAAAATGAATGAAGTTCATTACTTGAATCCATGTTTGTCTCATTTGA-GACATAAACTTA
129 AATCACAAAATGAATGAAGATCATTACTTGAATCCATGTTTGACTCATTTGAGGGCATAAACTTA
* * * *
1156520 CACCTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTCTATC
194 GA-CTTACAAAAATT-GTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATC
* * **
1156585 CTAATGAGAAGACTATATTTATAATGCCTAATCCTGAAAAGAATGAGGATTAGTATGACAATTCT
257 CTAATGAGAAGACTATGTTTATGATGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATT-T
* * * *
1156650 -TGTTTGTCTTATTTGAGAGACAAACTTTGATTCTGTCAAAAATGGTGGAAAGAAAAGCTTTTCT
320 ATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGTTGG-AAGAAAAGCTTTTCT
* * * * * *
1156714 AGAGACACAAAAGCATCAATGTCATGTATCCTAATGAATGGAAAGTGTTCTTGGTTTCCAATCTT
384 TGAGACACTAAAGCATCAATGTCATGTATCCTAA-CAAAGGAATGTGTTTTTGG-TTCCAATCTT
* ** * * * *
1156779 GAAAAGAATGGACATAGTTAGGAGAATCGTTGCTTGTCATATTTAAGGTATAAATTTTGATTTTT
447 GAAAAGAATGGACATACTTA-GAGAATCAATGCTTGCCATATTTAAGGGATAAACTTTGATTTTA
* * * *
1156844 AGGAAAATAGGGTAAAGTAGAGAATTTCATGCAAAAGAAAATCATCAATATCATTTATTCTAATG
511 AGGAAAATAGGGCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * *
1156909 AGGTGTATGTGTTTATGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATGCATGTTTGA
576 AGGAGAATGTGTTTATGTGCCTAATTACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGA
* * *
1156974 CTCATTAGAGGCATGAACTTAGACTTAGCAAAAATTAGAAGCAAGAAAGCCTTTCTTGAGAAACC
641 CACACTAGAAGCATGAACTTAGACTTAGCAAAAATTAGAAGCAAGAAAGCCTTTCTTGAGAAACC
* * * *
1157039 AAAGTGTCAATATCGTGTACCCTAATGAGAAGACTATGCTTATGGTGCCTAATCCTCAAAAGAAT
706 AAAGCGTCAATATCGTGTACACTAATGAGAAGACTATGCTTATGGAGCCTAATCCTCAAAAAAAT
* *
1157104 AGGGATTAATACGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTACCAAAAATG
771 AGGGATTAATACGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTACAAAAAATG
*
1157169 GTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGAA-AGAAAA
836 GTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAACGAAGAG-AAA
* *
1157233 GTGTTCTTGGTTTC-CAATC-T-ACAA-AA-GA-A-T-TGA
900 GTGTTCTTGG-TACACAATCTTGAAAAGAAGGAGATTATGA
* * * * *
1157266 GCATTGATGCTTGTCATAATGAGGGGATGAATTTTGATTTTAAGAAAAATAAGGG-AAAAAAGA-
1 GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGAAAAAAAGAT
* *
1157329 TTTCTATGCAAAAGAAAATCATCAATATCATTTAACCTAAAT-AGGAGAATGTGTTTCTAGTGCC
65 TTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCC
* * * *
1157393 TAGTCACAAAATGAATGAAGATCTTTACTTGAATCCATGTTTAACTCATTTGAGGGGCATGAACT
128 TAATCACAAAATGAATGAAGATCATTACTTGAATCCATGTTTGACTCATTTGA-GGGCATAAACT
* * * *
1157458 TAGACTTTACAAAAATTGCTAGGAAGAATGCCTTTCTTGTGAAACCAAAGCATCAGTATTGTCTA
192 TAGAC-TTACAAAAATTG-TAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
* * * *
1157523 TCCTAATGAGAACACTATGTTTATGGTGCCGAAT-CTCGAAAAGAATAGGGATTACTATGAGTAT
255 TCCTAATGAGAAGACTATGTTTATGATGCCTAATCCT-GAAAAGAAT-GGGATTAGTATGAGTAT
*
1157587 TTATGTTTGCCTTATTTAATG-GAAAAACTTTGATTCTATCAAAAACTGTTGGAAGAAAAGCTTT
318 TTATGTTTGTCTTATTTAA-GAGAAAAACTTTGATTCTATCAAAAA-TGTTGGAAGAAAAGCTTT
* * *
1157651 TCTTGCGACATTAAAGCATCAATGCCATGTATCCTAACAAAGGGAATGTGTTTTTGGTTCCTAAT
381 TCTTGAGACACTAAAGCATCAATGTCATGTATCCTAACAAA-GGAATGTGTTTTTGGTTCC-AAT
*
1157716 CTTGAAAAGAATAGAGAC-TACTATA-AGAATCAATGTTTGCC-TAATTTAAGGGATAAACTTTG
444 CTTGAAAAGAAT-G-GACATACT-TAGAGAATCAATGCTTGCCAT-ATTTAAGGGATAAACTTTG
* * *
1157778 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAATAAAATCATTAATAT-ATTTATC
505 ATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATATCATTTATC
*
1157842 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATAAATGAAGATCATTACTAGAATCCT
570 CTAATGAGGAGAATGTGTTTAT-GTGCCTAATTACAAAATAAATGAAGATCATTACTAGAATCCA
* ** * *
1157907 TGTTTGACACCCTAGAAGCATGAACTTAGACTTAGCAAAAATTAGTTGGAAGAAAGCTTTTCTTG
634 TGTTTGACACACTAGAAGCATGAACTTAGACTTAGCAAAAATTAGAAGCAAGAAAGCCTTTCTTG
* * * * * * *
1157972 AGAAGCCAAAGCGTCAATATTGTGTATATTTATGAGAAGACTATGTTTATGGAGTCTAATCCT-A
699 AGAAACCAAAGCGTCAATATCGTGTACACTAATGAGAAGACTATGCTTATGGAGCCTAATCCTCA
** * ** * *
1158036 AAACAAATTTGGATTAGTTTGAGTATTCATGTTTGTCTTATTTGAGAGAAAAACTTTGATTCTAT
764 AAA-AAATAGGGATTAATACGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTA-
* ** *
1158101 CAAAAAAAT-TTGG-AAGAAAAGCTTTTCTTTTGACACTAAAGCATCAATGTCATGTATCCTAAC
827 C-AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAAC
* *
1158164 GAAGAGAATGTGTTTTTGGTACACAATCTTGAAAAGAATGGAGACTGTTATGA
891 GAAGAGAAAGTGTTCTTGGTACACAATCTTGAAAAGAA-GGAGA---TTATGA
* * * * * *
1158217 GAATCAATGCTTG-CCTAATTTATGGTATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
1 GAATCGATGCTTGTCATAA-TGAAGGGATGAACTTTGATTTTAAGGAAAATAGGG-AAA-AAAAG
* * *
1158281 ATTTTCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGCATGTGTTTATAGAGCC
63 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * ** * * *
1158346 TAATTACAAAATGAATGAAGATCATTACTAGAATTGATGCTTGACAT-ATTAGA-GGCACAAACT
128 TAATCACAAAATGAATGAAGATCATTACTTGAATCCATGTTTGAC-TCATTTGAGGGCATAAACT
* * * * * *
1158409 TAGACTTAGCAAAACTTAGAAGCAAGAAAGCCTTTCTGGCGAAACCAAAGCATTAATATCGTGTA
192 TAGACTTA-CAAAAATT-GTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
* * * * * *
1158474 TCATTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAATGAATGGGGATTAGTTTCAAGTAT
255 TCCTAATGAGAAGACTATGTTTATGATGCCTAATCCTGAAAAGAAT-GGGATTAGTAT-GAGTAT
* * *
1158539 TCATGTTTGTCTTATTTAAGAGAAAAACTTTCATTCTATCAAAAATGGTTGGAGGAAAAGCTTTT
318 TTATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAAT-GTTGGAAGAAAAGCTTTT
* * * * *
1158604 CTT-ATAACACTAAAGCACCAATATCATTTATCCTAACGAAAGGATTGTGTTTTTGGTTCCCAAT
382 CTTGA-GACACTAAAGCATCAATGTCATGTATCCTAAC-AAAGGAATGTGTTTTTGGTT-CCAAT
1158668 CT
444 CT
1158670 AGAATACAAG
Statistics
Matches: 1190, Mismatches: 163, Indels: 90
0.82 0.11 0.06
Matches are distributed among these distances:
937 4 0.00
938 105 0.09
939 47 0.04
940 610 0.51
941 22 0.02
942 14 0.01
943 2 0.00
945 2 0.00
946 1 0.00
950 12 0.01
951 143 0.12
952 120 0.10
953 103 0.09
954 5 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (939 bp):
GAATCGATGCTTGTCATAATGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAAAAGATT
TTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
TCACAAAATGAATGAAGATCATTACTTGAATCCATGTTTGACTCATTTGAGGGCATAAACTTAGA
CTTACAAAAATTGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAA
TGAGAAGACTATGTTTATGATGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTTATGTTT
GTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGTTGGAAGAAAAGCTTTTCTTGAGACA
CTAAAGCATCAATGTCATGTATCCTAACAAAGGAATGTGTTTTTGGTTCCAATCTTGAAAAGAAT
GGACATACTTAGAGAATCAATGCTTGCCATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAG
GGCAAAGAAAAGAATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GTTTATGTGCCTAATTACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGACACACTAGAA
GCATGAACTTAGACTTAGCAAAAATTAGAAGCAAGAAAGCCTTTCTTGAGAAACCAAAGCGTCAA
TATCGTGTACACTAATGAGAAGACTATGCTTATGGAGCCTAATCCTCAAAAAAATAGGGATTAAT
ACGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTACAAAAAATGGTGGAAAGAA
AAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAACGAAGAGAAAGTGTTCTTGGT
ACACAATCTTGAAAAGAAGGAGATTATGA
Found at i:1161039 original size:475 final size:473
Alignment explanation
Indices: 1158668--1165693 Score: 7435
Period size: 475 Copynumber: 14.9 Consensus size: 473
1158658 GGTTCCCAAT
* * * * * *
1158668 CTAGAATACAAGTTTGCCTCATTTA-AGGCACGAACTTAGACTTAGCAAAAATTAGTAGCAAGAA
1 CTAGAATCCATGTTTGACTCA-TTAGAGGCACAAACTTAGACTT--CAAAAAATAGTAGGAAGAA
* * ** *
1158732 AGCCTTTCTTGAGAAACAAAAGTGTCAATATCGTGTATCCTAATGAGAAGAATATGTTTATGGTG
63 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * *
1158797 CCTAATCCTGAAAAGAATGGGGATTAATATAACTATTCATGTTTGTCTTATTTAAGAGACAAACC
128 CCTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACT
* * * *
1158862 TTGATTCTACCAAAAATGGTGGAAAGAAAAACTTTTCTTACGACACAAAAGCATCAATGTCATGT
192 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* *
1158927 ATCCTAATGAAAGGAAAGTGTTCTTGGTGTCTAATCTTGAAAAGAATGGAGACTATTACGAGAAT
257 ATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAAT
* * * * * * * * *
1158992 CGATGCTTGTCATAATGAAGGGAGGAATTTTGATTTTAGGGAAAATGGGGC-AA-AAAAGATTTC
322 CAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTTC
* * * * * * *
1159055 CATGCAATAGAAAATCATTAATAACATTTCA-CTTAATGAGGAGAATGTGCTTGTACTGCCTAAT
387 CATGCAAAAGAAAATCATCAATATCATTT-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * *
1159119 CACAAAATGAATGAAAACCATTA
451 TACAAAATGAATGAAGATCATTA
* * * * * * *
1159142 CTTGAATCCATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGAC-TT-CAAAAAATAGTAGGAAGAAA
* ** * * * * *
1159207 GCCTTTCTTGTGAAACCAAAGCATCAATATTTTCTATCCTATTGAGATGGCTATATTTATGGTGC
64 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
** * * * * * *
1159272 CTAGCCCTGAAAAGAATGAGAATTAGTATAAGTATTTATGTTTGTCTTATTCAATAGAAAAACTT
129 CTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTT
* *
1159337 TGATTCTATCAAAAACGGTTGG-AAGAAAAGTTTTTCTTGCGACACTAAAGCATCAATGTCATGT
193 TGATTCTATCAAAAATGG-TGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* * * * *
1159401 ATCCTAACG-AAGGAAAAGTGTTTTTAG-TTCTCAATCTTGAAAGGAATGGAGACTGTTACGAGA
257 ATCCTAATGAAAGG-AAAGTGTTCTTGGTTTC-CAATCTTGAAAAGAATGGAGACTATTACGAGA
* * * * *
1159464 ATCAATGCTTGCCTAATTTAAGAGATAAACTTTGATTTTAAGAAAAATAGGGCAAA-AAAAAGAT
320 ATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAA-AT
** * * *
1159528 TTTAATGCAAAAGAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAATTCCTA
384 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
1159593 ATTACAAAATGAATGAAGATCATTA
449 ATTACAAAATGAATGAAGATCATTA
* * * *
1159618 CTAGAATTCATGTTTGACTCATTAGAGGCACGAACTTAGACTTAGCAAAAATTAGTAGGAAAAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTT--CAAAAAATAGTAGGAAGAAA
* * * * *
1159683 GCCTTTCATGCGAAACCAAAACGTCAATATCGTGTATACTTATGAGAAGACTATGTTTATGGTGC
64 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * *
1159748 CTAATCTCGAAAA-AAAGGGGATTAGTTTGAGTATTCATGTTTGTATTATTTAAGAGAAAAACTT
129 CTAATC-CTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTT
* * * * * * *
1159812 TGATTCGATTAAAAACGGTTGAAAGAAAGGCTTTTCTTGCGACACAAAAGCATCAACGTCA-GTA
193 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
*
1159876 TCCTAATGAAAGGAAAATGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATC
258 TCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATC
* * * * * * *
1159941 GATGCTTGTCATAATGAAGGGATGAATTTTGATTTTTAGGAAAATAGGGCAAA-AAAAGATTTCC
323 AATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTTCC
** * * * * * *
1160005 ATGCTGAAGAAATTCATCAATATCTTTTGTCCTAATGAGAAGAATGCGCTTT-TAGTGCCTAATC
388 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTTATAGTGCCTAATT
1160069 A-AAAATGAATGAAGATCATTA
452 ACAAAATGAATGAAGATCATTA
* * * * * * * * *
1160090 CTTA-AATCCTTGTTTGTCTTATTTGAGGCATAAGCTTAGACTTTATAGAAATTGGT-GGCAAGA
1 C-TAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTTCA-A-AAAATAGTAGG-AAGA
* * ** * * * * *
1160153 ATGCCTTTCTGGTTAAGCCAAAGCATCAGTATCGTTTATCCTAATGAGAAAACTATGATTATGGT
62 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
* * * **
1160218 GCCTAATCTCGAAAAGATTGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTACTAGAAGAAA
127 GCCTAATC-CTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAA-AAA
* * *
1160283 -TTTGATTCTATTAAAAACT-GTTGAAAGAAAAGCTTTTCTTGCAACACTAAAGCATCAATGTCA
190 CTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCA
* * *
1160346 TGTATTCC-AATGAAAGGAATGTGTT-TTTG-TTCCGAATCTTGAAAAGAATGGAGACTGTTACG
254 TGTA-TCCTAATGAAAGGAAAGTGTTCTTGGTTTCC-AATCTTGAAAAGAATGGAGACTATTACG
* * *
1160408 AGAATCAATGCTTGTCGTATTTAAGGGATAAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAG
317 AGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAA
* * * ** *
1160472 ATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAACATGCTTATAGTGCC
382 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
1160537 TAATCACAAAATGAAAGAAGATCATTA
447 TAATTACAAAATGAATGAAGATCATTA
* * * * ** *
1160564 CTAGAATCAATGTTTGTCTCGTTTGAGGTGCAAACTTAGACTTCATAAAAATAGGTGGGAAGAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTTCA-AAAAATA-GTAGGAAGAAA
* * * * * * *
1160629 GCTTTTCTTGCGAAACGAGAGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTTTGGTGG
64 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * *
1160694 CTAATCCTAAAAGGAACGGGGATTAAG-ATGACTATTCATGTTTGTCTTATTTCAGAGACAAACT
129 CTAATCCTAAAA-GAATGGGGATT-AGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACT
* * *
1160758 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAATCAACAATGTCATGT
192 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* * * **
1160823 ATCCTAATCAATGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGATTGCTACGAGAAT
257 ATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAAT
* * * * *
1160888 CAATGCTTGCCTTATTTAAGTGATGAACTTTCA-TTTAAGGAAAATAGAGCAAAGAAAAAATTTT
322 CAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTTC
*
1160952 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGATGAGAATGTGTTTATAGTGCCTAATT
387 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATT
1161017 ACAAAATGAATGAAGATCATTA
452 ACAAAATGAATGAAGATCATTA
* * * * ** *
1161039 CTAAAATCCTTGTTCGACTCATTAGAGACATGAACTTAGACTTAGCAAAAATTAGTAGGAAGAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTT--CAAAAAATAGTAGGAAGAAA
* * * * *
1161104 GCCTTTCTTGAGAAACCAAAGTGA-CAATATCATCTATCCTAAT-AGGAAGACTATGTTTATGTT
64 GCCTTTCTTGCGAAACCAAAG-CATCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGGT
* * * * * * * *
1161167 GCCTAGTGCTGAAAAAAATAGGGATTAATATGACTATTCATGTTTGCCTTATTTAAGAGACAAAC
127 GCCTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAAC
* * *
1161232 TTTGATTCTATCGAAAATGG-GAGAAA-AAAAGCTTTTCTTGCAACACAAAAGCATCAATGTCAT
191 TTTGATTCTATCAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCAT
* * *
1161295 GTATTCC-AATGAAAGGAAAGTGTTCATGGTTTCCAATCTTGAAAGGAATGGAGACCATTACGAG
255 GTA-TCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * * * *
1161359 AATCGATGCTTGTCATAATGAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGAA
319 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-AA
* *
1161424 -TTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGCATGTGTTTATAGTGCCT
383 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
1161488 AATCAAAAAATAAATGAAGATCATTA
448 AATTACAAAATGAATGAAGATCATTA
* * * * * * * * *
1161514 CTGGAATCCATGTTTGTCTCATTTA-AAGCATAAGCTTAGACGTTACAAAAATTGGTTGCAAGAA
1 CTAGAATCCATGTTTGACTCA-TTAGAGGCACAAACTTAGAC-TT-CAAAAAATAGTAGGAAGAA
* * * * * * * *
1161578 AGCCTTTCTTGTGAAACCAAAGCTTCAGTATCGTTTACCCCAATAAGAAAACTATGTTTATGGTG
63 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * * *
1161643 CCGAATCCCGAAAAAAAATGGCGATTAGTATGAGTATTTATGTTTGTCTTATTTAATAGAAAAAC
128 CCTAAT-CC-TAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAAC
* * *
1161708 TTTGATTCTATCAAAAACGGTTGG-AAGAAAAGCTTTTCTTGCAACACTAAAGCATTAATGTCAT
191 TTTGATTCTATCAAAAATGG-TGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCAT
** * * * * * **
1161772 GTATCCTAACCAAGGGAATGTGTTTTTGG-TTCCTAATCTTGAAAAGAATAGAGACTACTATAAG
255 GTATCCTAATGAAAGGAAAGTGTTCTTGGTTTCC-AATCTTGAAAAGAATGGAGACTATTACGAG
* * * * *
1161836 AATCAATGTTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
319 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAAT
* * * * *
1161901 TTTCATGCAAATGAAAATCATCAATATTATTTATCTTAATGAGGAGAATGTGTTTATAGTGTCTA
384 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* *
1161966 ATTACAAAATAAATGATGATCATTA
449 ATTACAAAATGAATGAAGATCATTA
* * *
1161991 CTAGAATCCATGTTTGACTCATTAGAGGCGA-GAACTTAGACTTAGCAAAAATTAGTAGAAAGAA
1 CTAGAATCCATGTTTGACTCATTAGAGGC-ACAAACTTAGACTT--CAAAAAATAGTAGGAAGAA
* * * * *
1162055 AGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGATTATGTTTACGGTG
63 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * * * *
1162120 CCTAATCATGAAATGAATGGGGATTAGTTTAAGTATTCATATTTGTTTTATTTAAAAGAAAAACT
128 CCTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACT
* * * * * *
1162185 TTGATTCTATAAAAAACGGTTGG-AAGAAAAACTTTTCCTGCAACACTCAAGCATCAATGTCATG
192 TTGATTCTATCAAAAATGG-TGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATG
* * * * * * *
1162249 TATTCTAA-CAAAAGAAATGTGTTTTTGG-TTCCTAATCTTGAAAAGAATAGAGACTGTTATGAG
256 TATCCTAATGAAAGGAAA-GTGTTCTTGGTTTCC-AATCTTGAAAAGAATGGAGACTATTACGAG
* * * *
1162312 AATCAATGCTTGCCGTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGAT
319 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAAT
* *
1162377 TTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGCATGTGTTTATAGTGCCTA
384 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
1162442 ATCACAAAATGAAAGAAGATTATTA
449 ATTACAAAATGAATGAAGATCATTA
* * * * *
1162467 CTAGAATCCATGTTTGTCTCATTTATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAA
1 CTAGAATCCATGTTTGACTCA-TTA---GAGGCACAAACTTAGAC-TTCAAAAAA-TAGTAGGAA
* * * *
1162532 AAAAGCCTTTCTTACAAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
60 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATG
* * * * * *
1162597 GTGCTTGATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATG-TTATCTTATTTAAGAGACAA
125 GTGCCTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAA
* **
1162661 ACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTAACAC-AAACGCATCAATGTC
189 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAA-GCATCAATGTC
* * * *
1162725 ATGTATTCTAATGAAAGGAAAGTGTTCTTAGTTTCCAATATTGAAAAGAATAGAGACTATTACGA
253 ATGTATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * *
1162790 GAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTTAGGAAAATAGGGCAAAGAAAAGA
318 GAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-A
* * * *
1162855 A-TTCCAGGAAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGCATGTGTTTATAGTGCC
382 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
1162919 TAATTGCAAAATGACTGAAGATCATTA
447 TAATTACAAAATGAATGAAGATCATTA
* * * *
1162946 CTAGAATCCATGTTTGATTCATTAGAGTCACAAACTTAGACTTAGCAAAAATTAGTAGCAAGAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTT--CAAAAAATAGTAGGAAGAAA
* * ** *
1163011 GCCTTTCTTGAGAAACGAAAGTGTCAATATCGTGTATCCTAATCAGAAGACTATGTTTATGGTGC
64 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * *
1163076 CTAATCCTGAAAAGAATGGGGATTAATATGACTATTCATG-TTGTCTTATTTAAGAGACAAACTT
129 CTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTT
* * *
1163140 TGATTCTATGAAAAATGGTGGAAAGAAAAGCTTTTCTTGCCACACAAAAGCATCAATGTCATGTA
193 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTA
** * * *
1163205 TTATAATGAAAGGAAAGTGTTCATGGTTTCCAATCTTGAAAAGAATGGAGATTATTATGAGAATC
258 TCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATC
* * * * * * *
1163270 GATGCTTGTCATAATGAAGGGATGAATTTTGATTTTATGGGAAAA-AAGGCAAAGAAAAGAA-TT
323 AATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGGCAAAGAAAA-AATTT
* * * *
1163333 CCATGCAAAAGAAAATCATCAATATCTTTTATCCTAAAGGGGA-ACATGTGTTTATAGCGCCTAA
386 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA-ATGTGTTTATAGTGCCTAA
* *
1163397 TTACAAAATAAATGAAGATCCTTA
450 TTACAAAATGAATGAAGATCATTA
* * * *
1163421 CTAGAATCCATGTTTGACTTACTAGAGGCACAAACTTAGACTTATCAAAAATTAGTAAGAAGAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGAC-T-TCAAAAAATAGTAGGAAGAAA
* * *
1163486 GCCTTTCGTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGC
64 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * *
1163551 CTAATCCTACAACGAATGGGGATTAGTTTGAGTATTTATTTTTGTCTTATTTAAGAGAAAAACTT
129 CTAATCCTA-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTT
*
1163616 TGATTCTATCAAAAATGGTTGG-AAGAAAAGCTTTTCTTGCAACACTAAAGCATCAATGTCATGT
193 TGATTCTATCAAAAATGG-TGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
** * * *
1163680 ATCCTAGCGAAGGGAATGTGTTTTTGG-TTCC---C--------AAT-----C-A--AC--G---
257 ATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAAT
* * * * *
1163720 C--TG---GCCTAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGCCAAAGAAAAGAA-TT
322 CAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-AATTT
** * * * * * *
1163779 CTGTGCACAAGAAAACCATCAGTATCATTTATCTTAATGACGAGCATGTGTTTATAGTGCCTAAT
386 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
*
1163844 TACAAAATGAATAAAGATCATTA
451 TACAAAATGAATGAAGATCATTA
* * * * * *
1163867 CTAGTATCCATGTTTAACTTATTAGAGGCACAGACTTAGACTTAGCAAAAATTAGTAGCAAGAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTT--CAAAAAATAGTAGGAAGAAA
* * *
1163932 GCCTTTCTTGAGAAACCAAAAG-GTCAATATCGTGTATCCTAGTGAGAAGACTATGTTTATGGTG
64 GCCTTTCTTGCGAAACC-AAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * *
1163996 CCTAATTCTGAAAAGAAT-GGGATTAATATGACTATTCACGTTTGTCTTATTTAAGAGACAAACT
128 CCTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACT
* * * * *
1164060 TTGATTCTAACAAAAATAGTGGAAGGAAAAGCTTTTCTTGCGACACAAAAGCATCAATATCATGT
192 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGT
* * * *
1164125 ATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATATTAAAAAGAATGGAGACTATTATGAGAGT
257 ATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAAT
* * * * * * * *
1164190 CGATGCTTGTCATAATGAAGGGATGAATTTTGATTTTAAGGAAAATAGGACAAA-AAAAGATTTT
322 CAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTTC
* ** * *
1164254 CATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGTACTTCTAGTGCCTAATC
387 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATT
* ***
1164319 ATAAAATGAATGAAGATCGCAA
452 ACAAAATGAATGAAGATCATTA
* * *
1164341 CTTGAATCCATGTTTGTCTCATTTA-AGGCACGAAA-TTAGACTTATCAAAAATTAGTAGGAAGA
1 CTAGAATCCATGTTTGACTCA-TTAGAGGCAC-AAACTTAGAC-T-TCAAAAAATAGTAGGAAGA
* ** * * ** * * *
1164404 AAGCTTTTCTTAAGAAACCAAAGCGTCAATATTGTGTATATTTATGAGAAAACCATGTTTATGGT
62 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
* * * * *
1164469 GCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTTTTGTTTAATAGAAAAAC
127 GCCTAATC-CTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAAC
* *
1164534 TTTGATTCTATCAAAAATAGTTGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATG
191 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATG
* * * * * * **
1164599 TATCCTAA-CAAAGGGAA-TGTGTCTTTGGTTCCCAATCTTGAAAAGAACGGAAACT-GTAAAAG
256 TATCCTAATGAAAGGAAAGTGT-TC-TTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * *
1164661 AATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
319 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAAT
* * * * *
1164726 TTCCATGCAAAATAAAATCATCAATATCATTTATCCTAAAGAGGAGCATGTGTTTACAGTGTCTA
384 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
1164791 ATTACAAAATGAATGAAGATCATTA
449 ATTACAAAATGAATGAAGATCATTA
* * * *
1164816 CTAGAATCCATGTTTGACTTATTAGAGGCACGAACTTAGACTTAGCAAAAATTAGTAGGAAAAAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTT--CAAAAAATAGTAGGAAGAAA
* *
1164881 GCCTTTCTT-CTGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTG
64 GCCTTTCTTGC-GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
** * * * * *
1164945 CCTAATCCTGAAACTAATAGGGATTAGTTTAAGTATTCATGTTTGTTTTATTTAAGAG-AAAACC
128 CCTAATCCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACT
* *** * *
1165009 TTGATTCTATAAAAAACAATTGG-AAGAAAAGATTTTCTTGTGACACTAAAGCATCAATGTCATG
192 TTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATG
* * * **
1165073 TATCCTAATGAAAGGAATGTGTTTTTGG-TTCCAATCTTGAAAAGAATGGAGACTGTTTGGAGAA
256 TATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAA
** * * * * * *
1165137 TCGTTGCTTGTCTTATTTGAGGGATGAATTTTGATTTTTAGGAAAATTGGG-AAAAAAAAAGAAT
321 TCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAA-ATT
* * *
1165201 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGCATGTCTTTATAGTG-C---
385 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
1165262 ---C--------T----A--ATTA
450 TTACAAAATGAATGAAGATCATTA
** * *
1165269 CTAGAATCCATGTTTGACTTGTTAGAGGTACGAACTTAGACTT-ATAAGAAATTAGTAGGAAGAA
1 CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTTCA-AA-AAA-TAGTAGGAAGAA
** * * **
1165333 AGTTTTTCTTGCGAAACCTAAGCATCAAAATCGTGTATCCTTGTGAGAAGACTATGTTTATGGTG
63 AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * *
1165398 CCTAATCCTGAAACA-AATGGGGATTAGTTTGAGTATTCACGTTTGTCTTATTTAAGAGAAAAGC
128 CCTAATCCT-AAA-AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAAC
* * * ** *
1165462 TTTGATTCTATAAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGGTACTAAAGCATTAATGAT-AT
191 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATG-TCAT
* * *
1165526 GTATCCTAATGAATGGAAAGTGTTATTGGTTT-CAATCTTGAAAAGAATGGAGA-TAGTTAGGAG
255 GTATCCTAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTA-TTACGAG
* * * * * *
1165589 AATCATTGCTTGTCTTATTTAAGGGATTAAATTTGATTTT-AGGATAATAGGGGTAGAGAAAAGA
319 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGGCAAAGAAAA-A
* *
1165653 A-TTACGTGCAAAAGAAAATCATCAATATCATTTATCCTAAT
382 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
1165694 TATAAGCTCT
Statistics
Matches: 5530, Mismatches: 863, Indels: 338
0.82 0.13 0.05
Matches are distributed among these distances:
444 4 0.00
445 122 0.02
446 237 0.04
447 5 0.00
449 2 0.00
450 1 0.00
451 3 0.00
452 2 0.00
453 175 0.03
454 185 0.03
455 11 0.00
456 2 0.00
457 3 0.00
458 1 0.00
459 1 0.00
462 1 0.00
463 1 0.00
464 3 0.00
465 1 0.00
467 2 0.00
470 2 0.00
471 3 0.00
472 143 0.03
473 351 0.06
474 1209 0.22
475 1599 0.29
476 723 0.13
477 324 0.06
478 10 0.00
479 275 0.05
480 127 0.02
481 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (473 bp):
CTAGAATCCATGTTTGACTCATTAGAGGCACAAACTTAGACTTCAAAAAATAGTAGGAAGAAAGC
CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
AATCCTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGA
TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCC
TAATGAAAGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAAT
GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTTCCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAA
AATGAATGAAGATCATTA
Found at i:1163170 original size:158 final size:156
Alignment explanation
Indices: 1158730--1163685 Score: 1003
Period size: 158 Copynumber: 31.3 Consensus size: 156
1158720 TAGTAGCAAG
* ** * *
1158730 AAAGCCTTTCTTGAGAAACAAAAGTGTCAATATCGTGTATCCTAATGAGAAGAATATGTTTATGG
1 AAAGCCTTTCTTGA-AAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
1158795 TGCCTAATCCTGAAAAGAATGGGGATTAATATAACTATTCATGTTTGTCTTATTTAAGAGACAAA
65 TGCCTAATCCTGAAAAGAATGGAGATTATTATGA-TATTCATGCTTGTCTTATTTAAGAGACAAA
* **
1158860 CCTTGATTCTACCAAAAATGGTGGAAAGA
129 CTTTGATT-TATGAAAAATGGTGGAAAGA
* * * * * *
1158889 AAAACTTTTCTT-ACGACACAAAAGCATCAATGTCATGTATCCTAATGA-AAGGA-AAGTGTTCT
1 AAAGCCTTTCTTGA--AAACGAAAGCATCAATATCATGTATCCTAATGAGAA-GACTA-TGTT-T
* * * * * * * * * *
1158951 -TGGTGTCTAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCATAATGAAGGGA
61 ATGGTGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGA
** * * * *
1159015 GGAATTTTGATTTTAGGGAAAATGG-GGCAA-A
125 CAAACTTTGA-TTTATGAAAAATGGTGGAAAGA
* * * * * * * * * *
1159046 AAAG-ATTTCCATGCAATA-GAAAATCATTAATAACAT-T-TCACTTAATGAGGAGAATGTGCTT
1 AAAGCCTTT-CTTG-AAAACG-AAAGCATCAATATCATGTATC-C-TAATGAGAAGACTATGTTT
* ** * * ** * * * *
1159107 GTACTGCCTAATCAC--AAAATGAATGAAAACCATTACTTGA-ATCCATGTTTGTCTAATTTGAG
61 ATGGTGCCTAATC-CTGAAAA-GAATGGAGATTATTA--TGATATTCATGCTTGTCTTATTTAAG
* * *
1159169 -GCACAAACTTAGACTTTA-CAAAAATTGGTGGGAAG-
122 AG-ACAAACTTTGA-TTTATGAAAAA-TGGTGGAAAGA
* * ** * * * * *
1159204 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATTTTCTATCCTATTGAGATGGCTATATTTATGG
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
** * * * * * * *
1159269 TGCCTAGCCCTGAAAAGAAT-GAGAATTAGTATAAGTATTTATGTTTGTCTTATTCAATAGAAAA
65 TGCCTAATCCTGAAAAGAATGGAG-ATTATTATGA-TATTCATGCTTGTCTTATTTAAGAGACAA
* *
1159333 ACTTTGATTCTATCAAAAACGGTTGG-AAGA
128 ACTTTGATT-TATGAAAAATGG-TGGAAAGA
** * * * * * * ** * *
1159363 AAAGTTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAACGA-AGGAAAAGTGTTTTTA
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTA-TGTTTATG
* * * * * * * * * * *
1159427 GT-TCTCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCAATGCTTGCCTAATTTAAGAGATA
64 GTGCCT-AATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGACA
* * *
1159491 AACTTTGATTTTAAGAAAAATAGG-GCAAAAA
127 AACTTTGA-TTTATGAAAAAT-GGTGGAAAGA
** ** * * * * * * *
1159522 AAAGATTTTAATGCAAAA-GAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATA
1 AAAGCCTTTCTTG-AAAACG-AAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * *
1159586 ATTCCTAAT--TACAAAATGAATGAAGATCATTACTAGA-ATTCATGTTTGACTCA-TT-AGAGG
64 GTGCCTAATCCT-GAAAA-GAATGGAGATTATTA-T-GATATTCATGCTTGTCTTATTTAAGA-G
* * * *
1159646 CACGAACTTAGACTTA-GCAAAAATTAGTAGG-AA-A
124 -ACAAACTTTGATTTATG-AAAAA-TGGT-GGAAAGA
* * * * * * * *
1159680 AAAGCCTTTCATGCGAAACCAAAACGTCAATATCGTGTATACTTATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
1159745 TGCCTAAT-CTCGAAAA-AAAGGGGATTAGTT-TGAGTATTCATGTTTGTATTATTTAAGAGAAA
65 TGCCTAATCCT-GAAAAGAATGGAGATTA-TTATGA-TATTCATGCTTGTCTTATTTAAGAGACA
* * * *
1159807 AACTTTGATTCGATTAAAAACGGTTGAAAGA
127 AACTTTGATT-TATGAAAAATGGTGGAAAGA
* * * * * ** **
1159838 AAGGCTTTTCTTGCGACACAAAAGCATCAACGTCA-GTATCCTAATGA-AAGGAAAATGTTCT-T
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAA-GACTATGTT-TAT
* * * * * * * * * * *
1159900 GGTTTCC-AATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCATAATGAAGGGAT
63 GG-TGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGAC
* * * * *
1159964 GAATTTTGATTTTTAGGAAAATAGG-GCAAA-A
126 AAACTTTGATTTAT-GAAAAAT-GGTGGAAAGA
* * ** * * * * * **
1159995 AAAG-ATTTCCATGCTGAA-GAAATTCATCAATATCTTTTGTCCTAATGAGAAGAATGCGCTTT-
1 AAAGCCTTT-CTTG-AAAACGAAA-GCATCAATATCATGTATCCTAATGAGAAGACTATG-TTTA
* * * * * * * * * *
1160057 TAGTGCCTAAT-C-AAAAATGAATGAAGATCATTACTTAAATCCTTGTTTGTCTTATTT--GAGG
62 TGGTGCCTAATCCTGAAAA-GAATGGAGATTATTA-TGATATTCATGCTTGTCTTATTTAAGAGA
* * *
1160118 CATAAGCTTAGACTTTAT-AGAAATTGGTGGCAAG-
125 CA-AA-CTTTGA-TTTATGA-AAAATGGTGGAAAGA
* * * * * * * * * *
1160152 AATGCCTTTCTGGTTAAGCCAAAGCATCAGTATCGTTTATCCTAATGAGAAAACTATGATTATGG
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * *
1160217 TGCCTAAT-CTCGAAAAGATTGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTACTAGA-AG
65 TGCCTAATCCT-GAAAAGAATGGAGATTATTATGA-TATTCATGCTTGTCTTATTTA--AGAGAC
* *
1160280 AAA-TTTGATTCTATTAAAAACT-GTTGAAAGA
126 AAACTTTGATT-TATGAAAAA-TGGTGGAAAGA
* * * * * *
1160311 AAAGCTTTTCTTGCAACACTAAAGCATCAATGTCATGTATTCC-AATGA-AAGGAATGTGTTT-T
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTA-TCCTAATGAGAA-GACTATGTTTAT
* * * * * * * * * * * *
1160373 TGTTCCGAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCGTATTTAAGGGATA
63 GGTGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGACA
* * * *
1160438 AACTTTGATTTTAAGGAAAATAG-GCAAAGA
127 AACTTTGA-TTTATGAAAAATGGTGGAAAGA
** * * * * * *
1160468 AAAGATTTTCATGTAAAA-GAAAATCATCAATATCATTTATCCTAATAAGGAGAAC-ATGCTTAT
1 AAAGCCTTTCTTG-AAAACG-AAAGCATCAATATCATGTATCCTAATGAGAAG-ACTATGTTTAT
* * * * * ** *
1160531 AGTGCCTAATCAC--AAAATGAAAGAAGATCATTACTAGA-A-TCAATGTTTGTCTCGTTTGAG-
63 GGTGCCTAATC-CTGAAAA-GAATGGAGATTATTA-T-GATATTC-ATGCTTGTCTTATTTAAGA
* * * *
1160591 GTGCAAACTTAGACTTCAT-AAAAATAGGTGGGAAG-
123 G-ACAAACTTTGA-TTTATGAAAAAT-GGTGGAAAGA
* * * * *
1160626 AAAGCTTTTCTTGCGAAACGAGAGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTTTGG
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * ** * *
1160691 TGGCTAATCCT-AAAAGGAACGGGGATTAAGATGACTATTCATGTTTGTCTTATTTCAGAGACAA
65 TGCCTAATCCTGAAAA-GAATGGAGATTATTATGA-TATTCATGCTTGTCTTATTTAAGAGACAA
*
1160755 ACTTTGATTCTATCAAAAATGGTGGAAAGA
128 ACTTTGATT-TATGAAAAATGGTGGAAAGA
* * * * * * * * * *
1160785 AAAGCTTTTCTTGCGACACAAAATCAACAATGTCATGTATCCTAATCA-ATGGA-AAGTGTTCT-
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTT-TA
* * ** * * * * *
1160847 TGGTTTCC-AATCTTGAAAAGAATGGAGATTGCTACGAGAATCAATGCTTGCCTTATTTAAGTGA
62 TGG-TGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGA
** * * * * * *
1160911 TGAACTTTCATTTAAGGAAAATAGAGCAAAGA
125 CAAACTTTGATTTATGAAAAATGGTGGAAAGA
*** * * * * *
1160943 AAAAATTTTCATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGATG-AGAATGTGTTTAT
1 AAAGCCTTTCTTG-AAAACG-AAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTAT
* * * * * * * * * *
1161006 AGTGCCTAAT--TACAAAATGAATGAAGATCATTACTAAAATCCTTG-TTCGACTCA-TT-AGAG
63 GGTGCCTAATCCT-GAAAA-GAATGGAGATTATTA-TGATATTCATGCTT-GTCTTATTTAAGAG
* * *
1161066 ACATGAACTTAGACTTA-GCAAAAATTAGTAGG-AAG-
124 ACA--AACTTTGATTTATG-AAAAA-TGGT-GGAAAGA
* * *
1161101 AAAGCCTTTCTTGAGAAACCAAAGTGA-CAATATCATCTATCCTAAT-AGGAAGACTATGTTTAT
1 AAAGCCTTTCTTGA-AAACGAAAG-CATCAATATCATGTATCCTAATGA-GAAGACTATGTTTAT
* * * * * * *
1161164 GTTGCCTAGTGCTGAAAAAAATAGG-GATTAATATGACTATTCATGTTTGCCTTATTTAAGAGAC
63 GGTGCCTAATCCTGAAAAGAAT-GGAGATTATTATGA-TATTCATGCTTGTCTTATTTAAGAGAC
1161228 AAACTTTGATTCTATCG-AAAATGG-GAGAAA-A
126 AAACTTTGATT-TAT-GAAAAATGGTG-GAAAGA
* * * * * *
1161259 AAAGCTTTTCTTGCAACACAAAAGCATCAATGTCATGTATTCC-AATGA-AAGGA-AAGTGTTCA
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTA-TCCTAATGAGAA-GACTA-TGTTTA
* * * ** * * * * * * *
1161321 TGGTTTCC-AATCTTGAAAGGAATGGAGACCATTACGAGAATCGATGCTTGTCATAATGAAGGGA
62 TGG-TGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGA
** * * *
1161385 TGAATTTTGATTT-TAAAGAAAATAGG-GCAAAGA
125 CAAACTTTGATTTAT-GA-AAAAT-GGTGGAAAGA
** * ** * * * *
1161418 AAAGAATTCCAAGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAG-CATGTGTTTAT
1 AAAGCCTTTCTTG-AAAACG-AAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTTAT
* ** * * * * * *
1161481 AGTGCCTAAT-CAAAAAATAAATGAAGATCATTACTGGA-ATCCATGTTTGTCTCATTTAA-AG-
63 GGTGCCTAATCCTGAAAA-GAATGGAGATTATTA-T-GATATTCATGCTTGTCTTATTTAAGAGA
* * * * *
1161542 CATAAGCTTAGACGTTA-CAAAAATTGGTTGCAAG-
125 CA-AA-CTTTGA-TTTATGAAAAA-TGGTGGAAAGA
* * * * * * * * * *
1161576 AAAGCCTTTCTTGTGAAACCAAAGCTTCAGTATCGTTTACCCCAATAAGAAAACTATGTTTATGG
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * * * * *
1161641 TGCCGAATCCCGAAAAAAAATGGCGATTAGTATGAGTATTTATGTTTGTCTTATTTAATAGAAAA
65 TGCCTAATCCTG-AAAAGAATGGAGATTATTATGA-TATTCATGCTTGTCTTATTTAAGAGACAA
* *
1161706 ACTTTGATTCTATCAAAAACGGTTGG-AAGA
128 ACTTTGATT-TATGAAAAATGG-TGGAAAGA
* * * * * ** * * * *
1161736 AAAGCTTTTCTTGCAACACTAAAGCATTAATGTCATGTATCCTAACCA-AGGGAATGTGTTTTTG
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATG
* * * * * * * * * * * * *
1161800 GTTCCTAATCTTGAAAAGAATAGAGACTACTATAAGAATCAATGTTTGCCTAATTTAAGGGATAA
64 GTGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGACAA
* * *
1161865 ACTTTGATTTTAAGGAAAATAGG-GCAAAGA
128 ACTTTGA-TTTATGAAAAAT-GGTGGAAAGA
** * * * * * * * * * * *
1161895 AAAGATTTTCATGCAAATGAAAATCATCAATATTATTTATCTTAATGAGGAGAATGTGTTTATAG
1 AAAGCCTTTCTTGAAAACG-AAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * * * * *
1161960 TGTCTAAT--TACAAAATAAAT-GATGATCATTACTAGA-ATCCATGTTTGACTCA-TT-AGAGG
65 TGCCTAATCCT-GAAAA-GAATGGA-GATTATTA-T-GATATTCATGCTTGTCTTATTTAAGAGA
* * * *
1162019 CGAGAACTTAGACTTA-GCAAAAATTAGTAGAAAG-
125 C-A-AACTTTGATTTATG-AAAAA-TGGTGGAAAGA
* * * * * *
1162053 AAAGCCTTTCTTTCG-AAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGATTATGTTTACG
1 AAAGCCTTTC-TT-GAAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * ** * * *
1162117 GTGCCTAATCATGAAATGAATGGGGATTAGTT-TAAGTATTCATATTTGTTTTATTTAAAAGAAA
64 GTGCCTAATCCTGAAAAGAATGGAGATTA-TTATGA-TATTCATGCTTGTCTTATTTAAGAGACA
* *
1162181 AACTTTGATTCTATAAAAAACGGTTGG-AAGA
127 AACTTTGATT-TATGAAAAATGG-TGGAAAGA
* * * * ** * * * * * * *
1162212 AAAACTTTTCCTGCAACACTCAAGCATCAATGTCATGTATTCTAA-CAAAAGAAATGTGTTTTTG
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAG-ACTATGTTTATG
* * * * * * * * * * **
1162276 GTTCCTAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTTGCCGTATTTAAGGGATGA
64 GTGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGACAA
* * * *
1162341 ACTTTGATTTTAAGGAAAATAGTGCAAAGA
128 ACTTTGA-TTTATGAAAAATGGTGGAAAGA
* * * * *
1162371 AAAG-ATTTCTATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAG-CATGTGTTTA
1 AAAGCCTTTCT-TG-AAAACG-AAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTTA
* * * * * * *
1162433 TAGTGCCTAATCAC--AAAATGAAAGAAGATTATTACTAGA-ATCCATGTTTGTCTCATTTATTT
62 TGGTGCCTAATC-CTGAAAA-GAATGGAGATTATTA-T-GATATTCATGCTTGTCTTATTTA--A
* * * *
1162495 GAGGCACGAACTTAGACTTTA-AAAAAATTGGTGGGAA-A
121 GA-G-ACAAACTTTGA-TTTATGAAAAA-TGGTGGAAAGA
* * * *
1162533 AAAGCCTTTCTTACAAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTT-GAAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
1162598 TGCTTGATCCTGAAAAGAATGGGGATTAGTT-TGACTATTCATG-TTATCTTATTTAAGAGACAA
65 TGCCTAATCCTGAAAAGAATGGAGATTA-TTATGA-TATTCATGCTTGTCTTATTTAAGAGACAA
* *
1162661 ACTTTAATTCTATCAAAAATGGTGGAAAGA
128 ACTTTGATT-TATGAAAAATGGTGGAAAGA
* * * * *
1162691 AAAGCTTTTCTTGTAACAC-AAACGCATCAATGTCATGTATTCTAATGA-AAGGA-AAGTGTTCT
1 AAAGCCTTTCTTG-AAAACGAAA-GCATCAATATCATGTATCCTAATGAGAA-GACTA-TGTT-T
* * ** * * * * * * * *
1162753 -TAGTTTCC-AATATTGAAAAGAATAGAGACTATTACGAGAATCAATGCTTGCCTAATTTAAGGG
61 AT-GGTGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAG
* * * *
1162816 ATAAACTTTGATTTTTAGGAAAATAGG-GCAAAGA
124 ACAAACTTTGATTTAT-GAAAAAT-GGTGGAAAGA
** * ** * * * * * * *
1162850 AAAGAATTCCAGGAAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAG-CATGTGTTTATA
1 AAAGCCTTTCTTGAAAACG-AAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTTATG
* * * * * *
1162914 GTGCCTAAT--TGCAAAATGACTGAAGATCATTACTAGA-ATCCATGTTTGAT-TCA-TT-AGAG
64 GTGCCTAATCCTG-AAAA-GAATGGAGATTATTA-T-GATATTCATGCTTG-TCTTATTTAAGAG
* * * * *
1162973 TCACAAACTTAGACTTA-GCAAAAATTAGTAGCAAG-
124 --ACAAACTTTGATTTATG-AAAAA-TGGTGGAAAGA
** * *
1163008 AAAGCCTTTCTTGAGAAACGAAAGTGTCAATATCGTGTATCCTAATCAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGA-AAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* *
1163073 TGCCTAATCCTGAAAAGAATGGGGATTAATATGACTATTCATG-TTGTCTTATTTAAGAGACAAA
65 TGCCTAATCCTGAAAAGAATGGAGATTATTATGA-TATTCATGCTTGTCTTATTTAAGAGACAAA
1163137 CTTTGATTCTATGAAAAATGGTGGAAAGA
129 CTTTGATT-TATGAAAAATGGTGGAAAGA
* * * * * ** * *
1163166 AAAGCTTTTCTTGCCACACAAAAGCATCAATGTCATGTATTATAATGA-AAGGA-AAGTGTTCAT
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAA-GACTA-TGTTTAT
* * * * * * * * *
1163229 GGTTTCC-AATCTTGAAAAGAATGGAGATTATTATGAGAATCGATGCTTGTCATAATGAAGGGAT
63 GG-TGCCTAATCCTGAAAAGAATGGAGATTATTATGATATTC-ATGCTTGTCTTATTTAAGAGAC
* * * *
1163293 GAATTTTGATTTTATGGGAAAAA-AG-GCAAAGA
126 AAACTTTGA-TTTAT--GAAAAATGGTGGAAAGA
** * * * * * * * * *
1163325 AAAGAATTCCATGCAAAA-GAAAATCATCAATATCTTTTATCCTAAAGGGGA-ACATGTGTTTAT
1 AAAGCCTTTCTTG-AAAACG-AAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTTAT
* * * * * ** * * * *
1163388 AGCGCCTAAT--TACAAAATAAATGAAGATCCTTACTAGA-ATCCATGTTTGACTTA-CT-AGAG
63 GGTGCCTAATCCT-GAAAA-GAATGGAGATTATTA-T-GATATTCATGCTTGTCTTATTTAAGA-
* * * * *
1163448 GCACAAACTTAGACTTATCAAAAAT--TAGTAAGAA
123 G-ACAAACTTTGATTTATGAAAAATGGTGGAAAG-A
* * * * * *
1163482 GAAAGCCTTTCGTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
1 -AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * ** *
1163547 GTGCCTAATCCT-ACAACGAATGGGGATTAGTT-TGAGTATTTATTTTTGTCTTATTTAAGAGAA
64 GTGCCTAATCCTGA-AAAGAATGGAGATTA-TTATGA-TATTCATGCTTGTCTTATTTAAGAGAC
*
1163610 AAACTTTGATTCTATCAAAAATGGTTGG-AAGA
126 AAACTTTGATT-TATGAAAAATGG-TGGAAAGA
* * * *
1163642 AAAGCTTTTCTTGCAACACTAAAGCATCAATGTCATGTATCCTA
1 AAAGCCTTTCTTG-AAAACGAAAGCATCAATATCATGTATCCTA
1163686 GCGAAGGGAA
Statistics
Matches: 3366, Mismatches: 1077, Indels: 708
0.65 0.21 0.14
Matches are distributed among these distances:
155 6 0.00
156 67 0.02
157 431 0.13
158 1336 0.40
159 1221 0.36
160 160 0.05
161 36 0.01
162 78 0.02
163 31 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (156 bp):
AAAGCCTTTCTTGAAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGT
GCCTAATCCTGAAAAGAATGGAGATTATTATGATATTCATGCTTGTCTTATTTAAGAGACAAACT
TTGATTTATGAAAAATGGTGGAAAGA
Found at i:1166605 original size:20 final size:19
Alignment explanation
Indices: 1166524--1166613 Score: 85
Period size: 19 Copynumber: 4.6 Consensus size: 19
1166514 TGCCAGTTTC
1166524 ATGTATCGATACAATTGTGA-
1 ATGTATCGATACAA-TG-GAT
* *
1166544 A-GTATCGATACAATGAAC
1 ATGTATCGATACAATGGAT
* *
1166562 ATGTATCGATACAAAGCAT
1 ATGTATCGATACAATGGAT
*
1166581 GATGTATCGATACATTTGGAT
1 -ATGTATCGATACA-ATGGAT
1166602 ATGTATCGATAC
1 ATGTATCGATAC
1166614 TTTCAAGGGT
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.02
18 3 0.05
19 26 0.44
20 26 0.44
21 3 0.05
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAATGGAT
Found at i:1167781 original size:476 final size:474
Alignment explanation
Indices: 1166883--1169823 Score: 3554
Period size: 476 Copynumber: 6.2 Consensus size: 474
1166873 GATCCTAACA
* *
1166883 CTAATGAGGAGCATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCAATACTAGAATCCA
1 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
* * * *
1166948 GGTTTGACTTATTAGAGGCATAAACTTAGACTTATCAGAAATTAGTAGGAAGAAAGCCTTTCTTG
66 TGTTTGACTTATTAGAGGCA-CAACTTAGACTTATCAAAAATTAGTAGAAAGAAAGCCTTTCTTG
* *
1167013 CGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
130 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * *
1167078 AAAAAATAGAGATTAGTTTGAGTATTCATGTTTGTCTTATTTAA-AGGAAAAACTTTGATTCTAT
195 AAAAAA-GGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGA-GAAAAACTTTGATTCTAT
* * * * * * *
1167142 CAAAAACGGTTGAAAAAAAAGCTTTTCCTGCGACACTAAAGCATCAATGTGATGTATCCTAACGA
258 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGA
* * * * * *
1167207 AGGGAATGTGTTTTTGGTTACCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAACGCTTGT
323 AGGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTTGC
* * *
1167272 CAAATTTATA-GGATAAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAA-ATTTTTCATGCAAA
388 CTAATTTA-AGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-ATTTCATGCAAA
* *
1167335 AGAAAATCATTAGTATCATTTATC
451 AGAAAATCATCAATATCATTTATC
* * * ** * *
1167359 CTAATGAGGTGAATGTGCTTAGAGTGCCTAATCGCAGAATGAATGAAGATCATTACTAGAATCCG
1 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * *
1167424 TGTTTGTCTCATTTGAGTTGCA-AACTTAGACTT-TACAAAAATTGGTGGGAAGAAAGCCTTTCT
66 TGTTTGACTTATTAGAG--GCACAACTTAGACTTAT-CAAAAATTAGTAGAAAGAAAGCCTTTCT
* * * * * *
1167487 TACGAAACCAGAGCATCAATATCGTCTATCCTAATAAGAAGACTATGTTTTTGGTGCCTAATCTT
128 TGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * *
1167552 GAAAAAAACGGGATTAAG-ATGACTATTCATGTTTGTCTTATTTCAGAGACAAATTTTGATTCTA
193 GAAAAAAAGGGGATT-AGTTTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTA
* * *
1167616 TCAAAAAGTGGTGGAAAGGAAAGCTTTTCTCGTGACACAAAAGCATCAATGTCATGTATCCTAAT
257 TCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAAT
* * * * * **
1167681 GAATGGAAAGTATTCTTGGTTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATAATT
321 GAAGGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTT
* * * * * *
1167746 GCCTTATTTAAGTGATGAACTTTGATTTGAAGGAAAATTGGGCAAAGAAAAGATTTTCATGCAAA
386 GCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTCATGCAAA
* *
1167811 AAAAAATCATCAATATCATATATC
451 AGAAAATCATCAATATCATTTATC
* * *
1167835 CTAATGAGGAGAATGTGCTTATAGTGCTTAATTACAAAATGAATGAAGATCATCATTATTAGAAT
1 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAG---ATCATTACTAGAAT
* * * * *
1167900 CCATGTTTGACTCATTAGAGGCACGAACTTAGACTTAGCGAAAATTAGTTGAAAGAAAGCTTTTC
63 CCATGTTTGACTTATTAGAGGCAC-AACTTAGACTTATCAAAAATTAGTAGAAAGAAAGCCTTTC
* ** *
1167965 TTGAGAAACCAAAGTGTCAATATCGTGTATCATAATGAGAAGACTATGTTTATGGTGCCTAATCC
127 TTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
1168030 TGAAAAGAATGGGGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
192 TGAAAA-AAAGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCT
* * *
1168095 ATCAAAAATGGTGAAAAGAAAAGCTTTTCTTACGACACAAAAGCATCAATGTCCTGTATCCTAAT
256 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAAT
* * * * ***
1168160 GAATGGAAAGTGTTCTTGGTTTGCAATCTTG-AAAGAATAGAGACAGTTAAGAGAATTGTTGCTT
321 GAAGGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTT
* * * * * * * * *
1168224 GTCTTATTTAAGGGATGAATTTTGATTTTTAGGAGAAGAGGGCGAAGAAAAGAATTCCAAT-CAA
386 GCCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTC-ATGCAA
* *
1168288 AAGAGAATCATCAATATCATTTATT
450 AAGAAAATCATCAATATCATTTATC
* * * *
1168313 CTAATGAGAAGCATGTGTTTATAGTGCCTAATTACAAAAAGAATGAAGATCAATACTAGAATCCA
1 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
*
1168378 TGTTTGACTTATTAGAGGCACGAACTTAGACTTATCAAAAATTAGTAGAAAGAAAGCCTTTCTGG
66 TGTTTGACTTATTAGAGGCAC-AACTTAGACTTATCAAAAATTAGTAGAAAGAAAGCCTTTCTTG
* * * * *
1168443 CGAAACCAAAGCGTCAATATCATATATCCTTATGAGAAGACTATTTTTATGGTGCCTAATCCTGA
130 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * *
1168508 AACAAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAAAGAAAAACTTTGATTCTATT
195 AA-AAAAGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC
* * ** *
1168573 AAAAACGGTTGG-AAGAAAAGCTTTTCTTTCGACACTTAAGCATCAACGTCATGTATCCTAATGA
259 AAAAATGG-TGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGA
* * * * *
1168637 AGGGAATGTGTTTTTTGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTTAC
323 AGGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTTGC
* * * * * *
1168702 CAAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAATAAAAAAATTACAAGCAAAAG
388 CTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTCATGCAAAAG
*
1168767 AAAATCATCAGTATCATTTATC
453 AAAATCATCAATATCATTTATC
* * * * * * *
1168789 CCAATGTGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAGTAAAGATCATTACTAGAATCCA
1 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * *
1168854 TATTTGTCTTA-TATGAGGTACAAACTTAGACTTTAT-AAAAATTGGTGGAAAGAAAGCCTTTCT
66 TGTTTGACTTATTA-GAGGCAC-AACTTAGAC-TTATCAAAAATTAGTAGAAAGAAAGCCTTTCT
* * *
1168917 TGCGAAAGCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTTTGGTGCCTAATCCT
128 TGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * * *
1168982 GAAAAGAATGAGAATTAATATGAC-ATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
193 GAAAA-AAAGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTA
* * * *
1169046 TCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCAACACAAAACCATCAATATCATGTATCCTAATG
257 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATG
* * * * * ***
1169111 AATGGAAAGTGTTCTTAGTTTGCAATCTTG-AAAGAATAGAGACAGTTAGGAGAATTGTTGCTTG
322 AAGGGAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTTG
* * * * * * * *
1169175 TCTTATTTAAGGGATGAATTTTGATTTTTAGGAAAATAGGGCAAAGAAAAAAATTCCAAGCAAAA
387 CCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTCATGCAAAA
1169240 GAAAATCATCAATATCATTTATC
452 GAAAATCATCAATATCATTTATC
* * * *
1169263 CTAATGAGGAGGATGTGTTTATAGTGCCTAATTACAAAAAGAGTGAAGATCAATACTAGAATCCA
1 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
1169328 TGTTTGACTTATTAGAGGCACCAACTTAGAGTTATCAGAAATTAGTAGAAAGAAAGCCTTTCCTG
66 TGTTTGACTTATTAGAGGCA-CAACTTAGACTTATCAAAAATTAGTAGAAAGAAAGCCTTTCTTG
* * * * *
1169393 CAAAACCAAAGCGTCAATATCATGTACCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
130 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * ** *
1169458 AACGAATGCTGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC
195 AA-AAAAGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC
** * * * * *
1169523 AAAAACAGT-TAGAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATTTATGCTAACGA
259 AAAAATGGTGGA-AAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGA
* * * * * *
1169587 AGGGAATGTATTTTTGG-TTCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCAATGCTTG
323 AGGGAAAGTGTTCTTGGTTTCC-AATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTTG
*
1169651 CCTAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGAATTTCATGCAAAA
387 CCTAATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTCATGCAAAA
* *
1169716 AAAAATCATAAATATCATTTATC
452 GAAAATCATCAATATCATTTATC
* * * * *
1169739 CTAATAAGGAGCATGTGTTTATAGTGCCTAATTATAAAATGACTGAGGATCATTACTAGAATCCA
1 CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
*
1169804 TGTTTGACTCATTAGAGGCA
66 TGTTTGACTTATTAGAGGCA
1169824 TGATAAGACT
Statistics
Matches: 2101, Mismatches: 331, Indels: 66
0.84 0.13 0.03
Matches are distributed among these distances:
473 4 0.00
474 286 0.14
475 550 0.26
476 848 0.40
477 8 0.00
478 141 0.07
479 207 0.10
480 57 0.03
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (474 bp):
CTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
TGTTTGACTTATTAGAGGCACAACTTAGACTTATCAAAAATTAGTAGAAAGAAAGCCTTTCTTGC
GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
AAAAAGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAA
AAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGAAGG
GAAAGTGTTCTTGGTTTCCAATCTTGAAAAGAATAGAGACTGTTATGAGAATCAATGCTTGCCTA
ATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTTCATGCAAAAGAAA
ATCATCAATATCATTTATC
Found at i:1168160 original size:159 final size:159
Alignment explanation
Indices: 1167000--1169770 Score: 810
Period size: 159 Copynumber: 17.5 Consensus size: 159
1166990 TAGTAGGAAG
* * * * *
1167000 AAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
1167065 TGCCTAATCCTGAAAAAAATAGAGATTAGTTTGAGTATTCATGTTTGTCTTATTTAA-AGGAAAA
66 TGCCTAATCCTGAAAAGAATGGAGATTAATTTGACTATTCATGTTTGTCTTATTTAAGA-GACAA
* *
1167129 ACTTTGATTCTATCAAAAACGGTTGAAAA-A
130 ACTTTGATTTTATCAAAAATGG-TGAAAAGA
* * * * * * * * * *
1167159 AAAGCTTTTCCTGCGACACTAAAGCATCAATGTGATGTATCCTAACGA-AGGGAATGTGTTTTTG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATG
* * * * * * * * **
1167223 GTTACC-AATCTTGAAAAGAATGGAGACT-GTTATGA-GAATCAACGCTTGTCAAATTTATAG-G
65 G-TGCCTAATCCTGAAAAGAATGGAGATTAATT-TGACTATTC-ATGTTTGTCTTATTTA-AGAG
* * *** *
1167284 ATAAACTTTGATTTCAAGGAAAATAGG-GCAAAGA
126 ACAAACTTTGATTTTATCAAAAAT-GGTGAAAAGA
** * * * * * * * ** * * *
1167318 AAAATTTTTCATGCAAAAGAAAATCATTAGTATCATTTATCCTAATGAGGTGAATGTGCTTA-GA
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG-
* * * * * * * * *
1167382 GTGCCTAATCGCAG-AATGAATGAAGA-TCA-TT-ACTAGAATCCGTGTTTGTCTCATTTGAGTT
65 GTGCCTAATC-CTGAAAAGAATGGAGATTAATTTGACT---ATTCATGTTTGTCTTATTTAAG-A
* * **
1167443 G-CAAACTTAGACTTTA-CAAAAATTGGTGGGAAG-
125 GACAAACTTTGATTTTATCAAAAA-TGGTGAAAAGA
* * * * * * * *
1167476 AAAGCCTTTCTTACGAAACCAGAGCATCAATATCGTCTATCCTAATAAGAAGACTATGTTTTTGG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * ** *
1167541 TGCCTAATCTTGAAAAAAACGG-GATTAAGATGACTATTCATGTTTGTCTTATTTCAGAGACAAA
66 TGCCTAATCCTGAAAAGAATGGAGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
1167605 TTTTGATTCTATCAAAAAGTGGTGGAAAGG
131 CTTTGATTTTATCAAAAA-TGGTGAAAAGA
* * * * * *
1167635 AAAGCTTTTCTCGTGACACAAAAGCATCAATGTCATGTATCCTAATGAATGGAA-AGTAT-TCT-
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATG-A--GAAGACTATGTTTA
* * * * * * ** * *
1167697 TGGTTTCC-AATCTTGAAAAGAATGGAGATT-GTTACGA-GAATCAATAATTGCCTTATTTAAGT
63 TGG-TGCCTAATCCTGAAAAGAATGGAGATTAATT-TGACTATTC-ATGTTTGTCTTATTTAAGA
** * ** * *
1167759 GATGAACTTTGATTTGAAGGAAAATTGG-GCAAAGA
125 GACAAACTTTGATTT-TATCAAAAATGGTGAAAAGA
* * * * * * * * * * *
1167794 AAAGATTTTCATGCAAAAAAAAATCATCAATATCATATATCCTAATGAGGAGAATGTGCTTATAG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * ** * * *
1167859 TGCTTAAT--TACAAAATGAATGAAGATCATCATTATTAGAATCCATGTTTGACTCA-TT-AGAG
66 TGCCTAATCCT-GAAAA-GAATGGAGAT--TAATT-TGACTATTCATGTTTGTCTTATTTAAGA-
* * * * * *
1167920 GCACGAACTTAGA-CTTAGCGAAAATTAGTTG-AAAG-
125 G-ACAAACTTTGATTTTATC-AAAAAT-GGTGAAAAGA
* * ** * *
1167955 AAAGCTTTTCTTGAGAAACCAAAGTGTCAATATCGTGTATCATAATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
*
1168020 TGCCTAATCCTGAAAAGAATGGGGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCCTGAAAAGAATGGAGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAAA
1168085 CTTTGATTTTATCAAAAATGGTGAAAAGA
131 CTTTGATTTTATCAAAAATGGTGAAAAGA
* * * * * *
1168114 AAAGCTTTTCTTACGACACAAAAGCATCAATGTCCTGTATCCTAATGA-ATGGA-AAGTGTTCT-
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTT-TA
* * * * * ** ** * *
1168176 TGGTTTG-C-AATCTTG-AAAGAATAGAGA-CAGTTAAGAGAATTGTTGCTTGTCTTATTTAAGG
63 TGG--TGCCTAATCCTGAAAAGAATGGAGATTAATT-TGACTATTCATGTTTGTCTTATTTAAGA
** * ** * **
1168237 GATGAATTTTGATTTTTAGGAGAAGA-GG-GCGAAGA
125 GACAAACTTTGA-TTTTATCA-AAAATGGTGAAAAGA
** * * * * * * * * *
1168272 AAAGAATTCCAAT-CAAAAGAGAATCATCAATATCATTTATTCTAATGAGAAG-CATGTGTTTAT
1 AAAGCTTTTC-TTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTTAT
* * * * * * * *
1168335 AGTGCCTAATTAC-AAAAAGAATGAAGATCAATACTAGA--ATCCATGTTTGACTTA-TT-AGAG
64 GGTGCCTAA-TCCTGAAAAGAATGGAGATTAAT--TTGACTATTCATGTTTGTCTTATTTAAGA-
* * * *
1168395 GCACGAACTTAGA-CTTATCAAAAATTAGT-AGAAAG-
125 G-ACAAACTTTGATTTTATCAAAAA-TGGTGA-AAAGA
* * * * * * *
1168430 AAAGCCTTTCTGGCGAAACCAAAGCGTCAATATCATATATCCTTATGAGAAGACTATTTTTATGG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
1168495 TGCCTAATCCTGAAACA-AATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAAAGAAAA
66 TGCCTAATCCTGAAA-AGAATGGAGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
1168559 ACTTTGATTCTATTAAAAACGGTTG-GAAGA
130 ACTTTGATTTTATCAAAAATGG-TGAAAAGA
* * ** ** * * * * *
1168589 AAAGCTTTTCTTTCGACACTTAAGCATCAACGTCATGTATCCTAATGA-AGGGAATGTGTTTTTT
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATG
* * * * * * * * * ** ** * *
1168653 GTTCCCAATCTTGAAAAGAATAGAGACT-GTTATGA-GAATCAATGCTTACCAAATTTAAGGGAT
65 GTGCCTAATCCTGAAAAGAATGGAGATTAATT-TGACTATTC-ATGTTTGTCTTATTTAAGAGAC
** * *
1168716 AAACTTTGATTTTAAGAAAAATAGG-GCAAATA
128 AAACTTTGATTTTATCAAAAAT-GGTGAAAAGA
*** * ** * * * * * * * * * * * *
1168748 AAAAAATTACAAGCAAAAGAAAATCATCAGTATCATTTATCCCAATGTGGAGAATGTGCTTATAG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * ** * * * * *
1168813 TGCCTAATCAT-AAAATGAGTAAAGA-TCA-TT-ACTAGAATCCATATTTGTCTTATATGAG-GT
66 TGCCTAATCCTGAAAA-GAATGGAGATTAATTTGACT---ATTCATGTTTGTCTTATTTAAGAG-
* * *
1168873 ACAAACTTAGACTTTAT-AAAAATTGGTGGAAAG-
126 ACAAACTTTGATTTTATCAAAAA-TGGTGAAAAGA
* * * *
1168906 AAAGCCTTTCTTGCGAAAGC-AAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTTTG
1 AAAGCTTTTCTTGCGAAA-CAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* *
1168970 GTGCCTAATCCTGAAAAGAAT-GAGAATTAATATGAC-ATTAATGTTTGTCTTATTTAAGAGACA
65 GTGCCTAATCCTGAAAAGAATGGAG-ATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACA
*
1169033 AACTTTGATTCTATCAAAAATGGTGAAAAGA
129 AACTTTGATTTTATCAAAAATGGTGAAAAGA
* * *
1169064 AAAGCTTTTCTTGC-AACACAAAACCATCAATATCATGTATCCTAATGA-ATGGA-AAGTGTTCT
1 AAAGCTTTTCTTGCGAA-ACAAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTT-T
* * * * * * ** ** *
1169126 -TAGTTTG-C-AATCTTG-AAAGAATAGAGA-CAGTTAGGAGAATTGTTGCTTGTCTTATTTAAG
62 AT-G-GTGCCTAATCCTGAAAAGAATGGAGATTAATT-TGACTATTCATGTTTGTCTTATTTAAG
* ** * *
1169186 GGATGAATTTTGATTTT-T-AGGAAAATAGG-GCAAAGA
124 AGACAAACTTTGATTTTATCA--AAAAT-GGTGAAAAGA
*** * ** * * * * * * *
1169222 AAAAAATTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGA-TGTGTTTATA
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTATG
* * * * * * * *
1169286 GTGCCTAATTAC-AAAAAGAGTGAAGATCAATACTAGA--ATCCATGTTTGACTTA-TT-AGAGG
65 GTGCCTAA-TCCTGAAAAGAATGGAGATTAAT--TTGACTATTCATGTTTGTCTTATTTAAGA-G
* * * * *
1169346 CACCAACTTAGA-GTTATCAGAAATTAGT-AGAAAG-
126 -ACAAACTTTGATTTTATCA-AAAATGGTGA-AAAGA
* * * * * * *
1169380 AAAGCCTTTCCTGCAAAACCAAAGCGTCAATATCATGTACCCTTATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* ** * * *
1169445 TGCCTAATCCTGAAACGAATGCTGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGAAAAA
66 TGCCTAATCCTGAAAAGAATGGAGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* ** * *
1169510 CTTTGATTCTATCAAAAACAGTTAGAAGA
131 CTTTGATTTTATCAAAAATGGTGAAAAGA
* * * * * * * * * * *
1169539 AAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATTTATGCTAACGA-AGGGAATGTATTTTTG
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATG
* * * * * * * * *
1169603 GTTCCTAATCTTGAAAAGAATGGAGATT-ATTATGA-GAATCAATGCTTGCCTAATTTAAGGGAT
65 GTGCCTAATCCTGAAAAGAATGGAGATTAATT-TGACTATTC-ATGTTTGTCTTATTTAAGAGAC
** *
1169666 AAACTTTGATTTTAAGAAAAATAGG-GCAAAGA
128 AAACTTTGATTTTATCAAAAAT-GGTGAAAAGA
** * * * * * * * * * *
1169698 AAAGAATTTCATGCAAAAAAAAATCATAAATATCATTTATCCTAATAAGGAG-CATGTGTTTATA
1 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTTATG
1169762 GTGCCTAAT
65 GTGCCTAAT
1169771 TATAAAATGA
Statistics
Matches: 1847, Mismatches: 598, Indels: 334
0.66 0.22 0.12
Matches are distributed among these distances:
156 21 0.01
157 122 0.07
158 655 0.35
159 832 0.45
160 86 0.05
161 92 0.05
162 35 0.02
163 4 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (159 bp):
AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
TGCCTAATCCTGAAAAGAATGGAGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTTTATCAAAAATGGTGAAAAGA
Found at i:1169281 original size:950 final size:947
Alignment explanation
Indices: 1166883--1169823 Score: 3910
Period size: 950 Copynumber: 3.1 Consensus size: 947
1166873 GATCCTAACA
* * * *
1166883 CTAATGAGGAGCATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCAATACTAGAATCCA
1 CTAATGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAATAAAGATCATTACTAGAATCCA
* * *
1166948 GGTTTGACTTATTAGAGGCATAAACTTAGACTTATCAGAAATTAGTAGG-AAGAAAGCCTTTCTT
66 TGTTTGACTTATTAGAGGCACAAACTTAGACTTAT-AAAAATTAGT-GGAAAGAAAGCCTTTCTT
* *
1167012 GCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
129 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * *
1167077 AAAAAAAT-AGAGATTAGTTTGAGTATTCATGTTTGTCTTATTTAA-AGGAAAAACTTTGATTCT
194 AAAAGAATGAGA-ATTAATTTGA-CATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCT
* * * *
1167140 ATCAAAAACGGTTGAAAA-AAAAGCTTTTCCTGCGACACTAAAGCATCAATGTGATGTATCCTAA
256 ATCAAAAATGG-TGAAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAA
* * * * ** * * * ****
1167204 CGAAGGGAATGTGTTTTTGGTTACCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAACGCT
320 TGAATGGAAAGTGTTCTTGGTTTGCAATCTTG-AAAGAATAGAGACAGTTAAGAGAATTGTTGCT
** * * ** ** * *
1167269 TGTCAAATTTATA-GGATAAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAAATTTTTCATGCA
384 TGTCTTATTTA-AGGGATGAATTTTGATTTTTAGGAAAATAGGGCAAAGAAAAAAATTCCAAGCA
* * * * * ** *
1167333 AAAGAAAATCATTAGTATCATTTATCCTAATGAGGTGAATGTGCTTAGAGTGCCTAATCGCAGAA
448 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAA
* * * * * *
1167398 TGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGTTGCA-AACTTAGACTT-TACA
513 AGAATGAAGATCAATACTAGAATCCATGTTTGACTTATTAGAG--GCACAACTTAGACTTAT-CA
* * * * * * * * * *
1167461 AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAGAGCATCAATATCGTCTATCCTAATAAGA
575 AAAATTAGTAGAAAGAAAGCCTTTC-TGCGAAACCAAAGCGTCAATATCATATATCCTTATGAGA
* ** * *
1167526 AGACTATGTTTT-TGGTGCCTAATCTTGAAA-AAAACGGGATTAAG-ATGACTATTCATGTTTGT
639 AGACTAT-TTTTATGGTGCCTAATCCTGAAACAAATGGGGATT-AGTTTGAGTATTCATGTTTGT
* * * * * *
1167588 CTTATTTCAGAGACAAATTTTGATTCTATCAAAAA-GTGGTGGAAAGGAAAGCTTTTCTCGT-GA
702 CTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACG-GTTGG-AAGAAAAGCTTTTCT-TTCGA
* * * * *
1167651 CACAAAAGCATCAATGTCATGTATCCTAATGAATGGAAAGTATTCTTGGTTTCCAATCTTGAAAA
764 CACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAA
* ** * * * * *
1167716 GAATGGAGATTGTTACGAGAATCAATAATTGCCTTATTTAAGTGATGAACTTTGATTTGAAGGAA
829 GAATGGAGATTGTTATGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGAAA
* * *
1167781 AATTGGGCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCAATATCATATATC
894 AATAGGGCAAAGAAAAGAATTTCATGCAAAAAAAAATCATCAATATCATTTATC
* * *
1167835 CTAATGAGGAGAATGTGCTTATAGTGCTTAATTACAAAATGAATGAAGATCATCATTATTAGAAT
1 CTAATGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAAT-AA-A-GATCATTACTAGAAT
* * ** * *
1167900 CCATGTTTGACTCATTAGAGGCACGAACTTAGACTTAGCGAAAATTAGTTGAAAGAAAGCTTTTC
63 CCATGTTTGACTTATTAGAGGCACAAACTTAGACTTA-TAAAAATTAGTGGAAAGAAAGCCTTTC
* ** *
1167965 TTGAGAAACCAAAGTGTCAATATCGTGTATCATAATGAGAAGACTATGTTTATGGTGCCTAATCC
127 TTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * *
1168030 TGAAAAGAATGGGGATTAATTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
192 TGAAAAGAATGAGAATTAATTTGAC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
1168095 ATCAAAAATGGTGAAAAGAAAAGCTTTTCTTACGACACAAAAGCATCAATGTCCTGTATCCTAAT
256 ATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAAT
1168160 GAATGGAAAGTGTTCTTGGTTTGCAATCTTGAAAGAATAGAGACAGTTAAGAGAATTGTTGCTTG
321 GAATGGAAAGTGTTCTTGGTTTGCAATCTTGAAAGAATAGAGACAGTTAAGAGAATTGTTGCTTG
* * * * *
1168225 TCTTATTTAAGGGATGAATTTTGATTTTTAGGAGAAGAGGGCGAAGAAAAGAATTCCAATCAAAA
386 TCTTATTTAAGGGATGAATTTTGATTTTTAGGAAAATAGGGCAAAGAAAAAAATTCCAAGCAAAA
* * * *
1168290 GAGAATCATCAATATCATTTATTCTAATGAGAAGCATGTGTTTATAGTGCCTAATTACAAAAAGA
451 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAAAGA
1168355 ATGAAGATCAATACTAGAATCCATGTTTGACTTATTAGAGGCACGAACTTAGACTTATCAAAAAT
516 ATGAAGATCAATACTAGAATCCATGTTTGACTTATTAGAGGCAC-AACTTAGACTTATCAAAAAT
1168420 TAGTAGAAAGAAAGCCTTTCTGGCGAAACCAAAGCGTCAATATCATATATCCTTATGAGAAGACT
580 TAGTAGAAAGAAAGCCTTTCT-GCGAAACCAAAGCGTCAATATCATATATCCTTATGAGAAGACT
1168485 ATTTTTATGGTGCCTAATCCTGAAACAAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTT
644 ATTTTTATGGTGCCTAATCCTGAAACAAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTT
* * *
1168550 AAAAGAAAAACTTTGATTCTATTAAAAACGGTTGGAAGAAAAGCTTTTCTTTCGACACTTAAGCA
709 AAGAGAAAAACTTTGATTCTATCAAAAACGGTTGGAAGAAAAGCTTTTCTTTCGACACTAAAGCA
* * * * *
1168615 TCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTTGTTCCCAATCTTGAAAAGAATAGAGAC
774 TCAATGTCATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGAT
* *
1168680 TGTTATGAGAATCAATGCTTACCAAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAA
839 TGTTATGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAA
* * * * * *
1168745 ATAAAAAAATTACAAGCAAAAGAAAATCATCAGTATCATTTATC
904 AGAAAAGAATTTCATGCAAAAAAAAATCATCAATATCATTTATC
* * * * *
1168789 CCAATGTGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAGTAAAGATCATTACTAGAATCCA
1 CTAATGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAATAAAGATCATTACTAGAATCCA
* * * *
1168854 TATTTGTCTTA-TATGAGGTACAAACTTAGACTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTT
66 TGTTTGACTTATTA-GAGGCACAAACTTAGAC-TTATAAAAATTAGTGGAAAGAAAGCCTTTCTT
* * *
1168918 GCGAAAGCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTTTGGTGCCTAATCCTG
129 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* *
1168983 AAAAGAATGAGAATTAATATGACATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
194 AAAAGAATGAGAATTAATTTGACATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * *
1169048 AAAAATGGTGAAAAGAAAAGCTTTTCTTGCAACACAAAACCATCAATATCATGTATCCTAATGAA
259 AAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGAA
* *
1169113 TGGAAAGTGTTCTTAGTTTGCAATCTTGAAAGAATAGAGACAGTTAGGAGAATTGTTGCTTGTCT
324 TGGAAAGTGTTCTTGGTTTGCAATCTTGAAAGAATAGAGACAGTTAAGAGAATTGTTGCTTGTCT
1169178 TATTTAAGGGATGAATTTTGATTTTTAGGAAAATAGGGCAAAGAAAAAAATTCCAAGCAAAAGAA
389 TATTTAAGGGATGAATTTTGATTTTTAGGAAAATAGGGCAAAGAAAAAAATTCCAAGCAAAAGAA
* *
1169243 AATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATTACAAAAAGAGTG
454 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAAAGAATG
* *
1169308 AAGATCAATACTAGAATCCATGTTTGACTTATTAGAGGCACCAACTTAGAGTTATCAGAAATTAG
519 AAGATCAATACTAGAATCCATGTTTGACTTATTAGAGGCA-CAACTTAGACTTATCAAAAATTAG
* * * *
1169373 TAGAAAGAAAGCCTTTCCTGCAAAACCAAAGCGTCAATATCATGTACCCTTATGAGAAGACTATG
583 TAGAAAGAAAGCCTTT-CTGCGAAACCAAAGCGTCAATATCATATATCCTTATGAGAAGACTATT
* **
1169438 TTTATGGTGCCTAATCCTGAAACGAATGCTGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAG
647 TTTATGGTGCCTAATCCTGAAACAAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAG
* * *
1169503 AGAAAAACTTTGATTCTATCAAAAACAGTTAGAAGAAAAGCTTTTCTTGCGACACTAAAGCATCA
712 AGAAAAACTTTGATTCTATCAAAAACGGTTGGAAGAAAAGCTTTTCTTTCGACACTAAAGCATCA
* * * * *
1169568 ATGTCATTTATGCTAACGAAGGGAATGTATTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTAT
777 ATGTCATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGT
1169633 TATGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAGA
842 TATGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAGA
*
1169698 AAAGAATTTCATGCAAAAAAAAATCATAAATATCATTTATC
907 AAAGAATTTCATGCAAAAAAAAATCATCAATATCATTTATC
* * * * * * *
1169739 CTAATAAGGAGCATGTGTTTATAGTGCCTAATTATAAAATGACTGAGGATCATTACTAGAATCCA
1 CTAATGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAATAAAGATCATTACTAGAATCCA
*
1169804 TGTTTGACTCATTAGAGGCA
66 TGTTTGACTTATTAGAGGCA
1169824 TGATAAGACT
Statistics
Matches: 1737, Mismatches: 228, Indels: 50
0.86 0.11 0.02
Matches are distributed among these distances:
950 746 0.43
951 146 0.08
952 48 0.03
953 10 0.01
954 470 0.27
955 314 0.18
956 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (947 bp):
CTAATGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAATAAAGATCATTACTAGAATCCA
TGTTTGACTTATTAGAGGCACAAACTTAGACTTATAAAAATTAGTGGAAAGAAAGCCTTTCTTGC
GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
AAGAATGAGAATTAATTTGACATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAATGGTGAAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGAATG
GAAAGTGTTCTTGGTTTGCAATCTTGAAAGAATAGAGACAGTTAAGAGAATTGTTGCTTGTCTTA
TTTAAGGGATGAATTTTGATTTTTAGGAAAATAGGGCAAAGAAAAAAATTCCAAGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAAAGAATGAA
GATCAATACTAGAATCCATGTTTGACTTATTAGAGGCACAACTTAGACTTATCAAAAATTAGTAG
AAAGAAAGCCTTTCTGCGAAACCAAAGCGTCAATATCATATATCCTTATGAGAAGACTATTTTTA
TGGTGCCTAATCCTGAAACAAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGAA
AAACTTTGATTCTATCAAAAACGGTTGGAAGAAAAGCTTTTCTTTCGACACTAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATG
AGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
AATTTCATGCAAAAAAAAATCATCAATATCATTTATC
Found at i:1170167 original size:399 final size:399
Alignment explanation
Indices: 1169424--1170218 Score: 1198
Period size: 399 Copynumber: 2.0 Consensus size: 399
1169414 ATGTACCCTT
* * *
1169424 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAACGAATGCTGATTAGTTTGAGTATTCATGT
1 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGCGGATTAGTATGAGTATTCATGT
* * *
1169489 TTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTTAGAAGAAAAGCTTTTCTTGCG
66 TTGTCTTATGTAAAAGAAAAACTTTGATTCTATCAAAAACAGTTAGAAGAAAAGCTTTTATTGCG
* * * *
1169554 ACACTAAAGCATCAATGTCATTTATGCTAACGAAGGGAATGTATTTTTGGTTCCTAATCTTGAAA
131 ACACTAAAGCATCAATGTCATGTATCCTAACGAAAGGAATGTATTTTTGGTTCCCAATCTTGAAA
* * * * * *
1169619 AGAATGGAGATTATTATGAGAATCAATGCTTGCCTAATTTAAGGGATAAACTTTGATTTTAAGAA
196 ACAATAGAAACTATTACGAGAATCAATGCTTGCCTAATTTAACGGATAAACTTTGATTTTAAGAA
* *
1169684 AAATAGGGCAAAGAAAAGAATTTCATGCAAAAAAAAATCATAAATATCATTTATCCTAATAAGGA
261 AAATAGGGCAAAGAAAACAAATTCATGCAAAAAAAAATCATAAATATCATTTATCCTAATAAGGA
* * * * * *
1169749 GCATGTGTTTATAGTGCCTAATTATAAAATGACTGAGGATCATTACTAGAATCCATGTTTGACTC
326 GCAGGTCTTTATAGTGCCTAATTACAAAATCAATGAAGATCATTACTAGAATCCATGTTTGACTC
1169814 ATTAGAGGC
391 ATTAGAGGC
* *
1169823 ATGATAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGAATTAGTATGAGTATTTATG
1 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGCGG-ATTAGTATGAGTATTCATG
* *
1169887 TTTGTCTTATGTAAAAGAAAAACTTTGATTCTATCAAAAACGGTTGGAAGAAAAGCTTTTATTGC
65 TTTGTCTTATGTAAAAGAAAAACTTTGATTCTATCAAAAACAGTTAGAAGAAAAGCTTTTATTGC
* *
1169952 GACACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
130 GACACTAAAGCATCAATGTCATGTATCCTAACGAAAGGAATGTATTTTTGGTTCCCAATCTTGAA
* * * *
1170017 AACAATAGAAACTGTTACGAGAATCAATGCTTGCCTTATTTAACGGATGAACTTTGATTTTAAGG
195 AACAATAGAAACTATTACGAGAATCAATGCTTGCCTAATTTAACGGATAAACTTTGATTTTAAGA
* * * * *
1170082 AAGATAGGGCAAA-AAACCAAATTCTATGCAAAATAAAATCATCAATATCATTTATCCTAATGAG
260 AAAATAGGGCAAAGAAAACAAATTC-ATGCAAAAAAAAATCATAAATATCATTTATCCTAATAAG
1170146 GAGCAGGTCTTTATAGTGCCTAATTACAAAATCAATGAAGATCATTACTAGAATCCATGTTTGAC
324 GAGCAGGTCTTTATAGTGCCTAATTACAAAATCAATGAAGATCATTACTAGAATCCATGTTTGAC
*
1170211 TTATTAGA
389 TCATTAGA
1170219 AGCACGAACT
Statistics
Matches: 354, Mismatches: 40, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
398 9 0.03
399 345 0.97
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (399 bp):
ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGCGGATTAGTATGAGTATTCATGT
TTGTCTTATGTAAAAGAAAAACTTTGATTCTATCAAAAACAGTTAGAAGAAAAGCTTTTATTGCG
ACACTAAAGCATCAATGTCATGTATCCTAACGAAAGGAATGTATTTTTGGTTCCCAATCTTGAAA
ACAATAGAAACTATTACGAGAATCAATGCTTGCCTAATTTAACGGATAAACTTTGATTTTAAGAA
AAATAGGGCAAAGAAAACAAATTCATGCAAAAAAAAATCATAAATATCATTTATCCTAATAAGGA
GCAGGTCTTTATAGTGCCTAATTACAAAATCAATGAAGATCATTACTAGAATCCATGTTTGACTC
ATTAGAGGC
Found at i:1170560 original size:158 final size:159
Alignment explanation
Indices: 1169907--1170559 Score: 360
Period size: 158 Copynumber: 4.1 Consensus size: 159
1169897 GTAAAAGAAA
* * * * *
1169907 AACTTTGATTCT-ATCAAAAACGGTTGGAAGAAAAGCTTTTATTGCGACACTAAAGCATCAATGT
1 AACTTTGATT-TAAGCAAAAATGGTTGGAAGAAAAGCTTTTCTTGCGAAACTAAAGCATCAATAT
* * * * * *
1169971 CATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAACAATAGAAACT-GTTAC
65 CATGTATCCTAA-AAAAGGAATGTGTTTATGGTGCCCAATCTTGAAAACAATGGAGACTAGTTAT
*
1170035 GAGAATCAATGCTTGCCTTATTTAACGGATG
129 GAGAATCAATGCTTGCCTTATTTAAGGGATG
* * * * ** * *
1170066 AACTTTGATTTTAAG-GAAGATAGG--GCAA-AAAACCAAATTCTATGC-AAAATAAAATCATCA
1 AACTTTGA-TTTAAGCAAAAAT-GGTTGGAAGAAAAGC-TTTTCT-TGCGAAACT-AAAGCATCA
* ** * * * * ** *
1170126 ATATCATTTATCCT-AATGAGGAGCAGGTCTTTATAGTGCCTAAT-TACAAAATCAATGAAGA-T
61 ATATCATGTATCCTAAAAAAGGA--ATGTGTTTATGGTGCCCAATCTTGAAAA-CAATGGAGACT
* * * * * *
1170188 CA-TTACT-AGAATCCATGTTTGACTTA-TTAGAAGCACG
123 -AGTTA-TGAGAATCAATGCTTGCCTTATTTA-AGGGATG
* * * * * * * * * *
1170225 AACTTAGACTT-ATCAAAAATTAGTAGGAAG-AAAGCCTTTCATACAAAACCAAAGCATCAATAT
1 AACTTTGATTTAAGCAAAAA-TGGTTGGAAGAAAAGCTTTTCTTGCGAAACTAAAGCATCAATAT
* * * * * * * * * *
1170288 CGTGTATCCTTATGAGAA-GACTATGTTTATGGTGCCTATTCCTG-AAACGAATGGGGATTAGTT
65 CATGTATCC-TA-AAAAAGGAATGTGTTTATGGTGCCCAATCTTGAAAAC-AATGGAGACTAGTT
* * * * *
1170351 -TGAGTATTCCTAT--TTGTCTTATTTAAGAGA-A
127 ATGAG-AAT-CAATGCTTGCCTTATTTAAGGGATG
* * * *
1170382 AACTTTGATTCAATCAAAAATGGTTGGAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTC
1 AACTTTGATTTAAGCAAAAATGGTTGGAAGAAAAGCTTTTCTTGCGAAACTAAAGCATCAATATC
* * *
1170447 ATGTATCCTAACAAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTATG
66 ATGTATCCTAA-AAAAGGAATGTGTTTATGGTGCCCAATCTTGAAAACAATGGAGACTAGTTATG
1170511 AGAATCAATGCTTGCCTTATTTAAGGGATG
130 AGAATCAATGCTTGCCTTATTTAAGGGATG
1170541 AACTTTGATTTAAGCAAAA
1 AACTTTGATTTAAGCAAAA
1170560 TAGGGCAAAG
Statistics
Matches: 350, Mismatches: 105, Indels: 78
0.66 0.20 0.15
Matches are distributed among these distances:
156 3 0.01
157 38 0.11
158 169 0.48
159 121 0.35
160 17 0.05
161 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (159 bp):
AACTTTGATTTAAGCAAAAATGGTTGGAAGAAAAGCTTTTCTTGCGAAACTAAAGCATCAATATC
ATGTATCCTAAAAAAGGAATGTGTTTATGGTGCCCAATCTTGAAAACAATGGAGACTAGTTATGA
GAATCAATGCTTGCCTTATTTAAGGGATG
Done.