Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2382
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109534
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Found at i:3430 original size:13 final size:13
Alignment explanation
Indices: 3412--3490 Score: 65
Period size: 13 Copynumber: 5.9 Consensus size: 13
3402 ACCTTCTCTT
3412 CAAAAAAAAAGAG
1 CAAAAAAAAAGAG
*
3425 CAAAAAAAAAAAG
1 CAAAAAAAAAGAG
* *
3438 CAAAAAAAAAAAAA
1 C-AAAAAAAAAGAG
3452 CAAAAAACAAA-A-
1 CAAAAAA-AAAGAG
3464 CAAAGAAAAAGAGAG
1 CAAA-AAAAA-AGAG
3479 -AAAAGAAAAAGA
1 CAAAA-AAAAAGA
3491 ACCTGCTTAA
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
12 6 0.11
13 28 0.49
14 23 0.40
ACGTcount: A:0.81, C:0.08, G:0.11, T:0.00
Consensus pattern (13 bp):
CAAAAAAAAAGAG
Found at i:3433 original size:15 final size:14
Alignment explanation
Indices: 3413--3463 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
3403 CCTTCTCTTC
*
3413 AAAAAAAAAGAGC-
1 AAAAAAAAAAAGCA
3426 AAAAAAAAAAAGCA
1 AAAAAAAAAAAGCA
*
3440 AAAAAAAAAAAACA
1 AAAAAAAAAAAGCA
3454 AAAAACAAAA
1 AAAAA-AAAA
3464 CAAAGAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
13 12 0.35
14 18 0.53
15 4 0.12
ACGTcount: A:0.86, C:0.08, G:0.06, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGCA
Found at i:3472 original size:16 final size:14
Alignment explanation
Indices: 3413--3488 Score: 71
Period size: 15 Copynumber: 5.1 Consensus size: 14
3403 CCTTCTCTTC
*
3413 AAAAAAAAAGAGCAA
1 AAAAAAAAAGA-AAA
3428 AAAAAAAAAGCAAAA
1 AAAAAAAAAG-AAAA
*
3443 AAAAAAAAACAAAA
1 AAAAAAAAAGAAAA
3457 AACAAAACAAAGAAAA
1 AA-AAAA-AAAGAAAA
* *
3473 AGAGAGAAAAGAAAA
1 A-AAAAAAAAGAAAA
3488 A
1 A
3489 GAACCTGCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
14 6 0.12
15 34 0.65
16 11 0.21
17 1 0.02
ACGTcount: A:0.83, C:0.07, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAAA
Found at i:4533 original size:26 final size:26
Alignment explanation
Indices: 4503--4592 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
4493 AAGTTGGTGG
*
4503 CACCTTTCAGTCCTCAAAGAGCAGGA
1 CACCTTTCAGTCCACAAAGAGCAGGA
* * ** *
4529 CACCTCTTAAAGCCCACAAA-AGTTGGTGG
1 CACCT-TT-CAGTCCACAAAGAG-CAG-GA
*
4558 CACCTTTCAGTCCCCAAAGAGCAGGA
1 CACCTTTCAGTCCACAAAGAGCAGGA
4584 CACCTTTCA
1 CACCTTTCA
4593 AAGCCCACCC
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
26 15 0.32
27 13 0.28
28 13 0.28
29 6 0.13
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (26 bp):
CACCTTTCAGTCCACAAAGAGCAGGA
Found at i:4540 original size:55 final size:55
Alignment explanation
Indices: 4456--5078 Score: 882
Period size: 55 Copynumber: 11.3 Consensus size: 55
4446 TCCGCTTTTT
4456 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
4511 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACAAAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
4566 AGTCCCCAAAGAGCAGGACACCT-TTCAAAGCCCACCCAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
* *
4621 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTTGCACCTTTT
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * ** *
4676 AGTCCCCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCGTCTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
4731 AGTCCTCAAAGAGTAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCGCCTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
4786 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTT-C
* * * *
4841 ATTCCCCAAAGAGCAGGACACCT-TTCAAAGCCCACCCAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
*
4896 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
4951 AGTCCCCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
5006 AGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
5061 ACTCCTCAATGAGAAGGA
1 AGTCCTCAAAGAGCAGGA
5079 TACACTTTAT
Statistics
Matches: 516, Mismatches: 43, Indels: 18
0.89 0.07 0.03
Matches are distributed among these distances:
54 11 0.02
55 495 0.96
56 10 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:4561 original size:29 final size:29
Alignment explanation
Indices: 4474--4562 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 29
4464 AAGAGCAGGA
*
4474 CACCTCTTAAAGCCCACACAAGTTGGTGG
1 CACCTCTTAAAGCCCACAAAAGTTGGTGG
* * * ** *
4503 CACCT-TT-CAGTCCTCAAAGAG-CAG-GA
1 CACCTCTTAAAGCCCACAAA-AGTTGGTGG
4529 CACCTCTTAAAGCCCACAAAAGTTGGTGG
1 CACCTCTTAAAGCCCACAAAAGTTGGTGG
4558 CACCT
1 CACCT
4563 TTCAGTCCCC
Statistics
Matches: 42, Mismatches: 13, Indels: 10
0.65 0.20 0.15
Matches are distributed among these distances:
26 6 0.14
27 12 0.29
28 13 0.31
29 11 0.26
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.20
Consensus pattern (29 bp):
CACCTCTTAAAGCCCACAAAAGTTGGTGG
Found at i:4709 original size:26 final size:26
Alignment explanation
Indices: 4627--4709 Score: 60
Period size: 26 Copynumber: 3.1 Consensus size: 26
4617 TTCCAGTCCT
*
4627 CAAAGAGCAGGACACCTCTTAAAGCC
1 CAAAGAGCAGGACACCTTTTAAAGCC
** * ***
4653 CACACA-AGTTGGTTGCACCTTTTAGTCCC
1 CA-A-AGAGCAGG--ACACCTTTTAAAGCC
4682 CAAAGAGCAGGACACCTTTTAAAGCC
1 CAAAGAGCAGGACACCTTTTAAAGCC
4708 CA
1 CA
4710 CACAAGTTGG
Statistics
Matches: 39, Mismatches: 13, Indels: 10
0.63 0.21 0.16
Matches are distributed among these distances:
26 15 0.38
27 6 0.15
28 6 0.15
29 12 0.31
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (26 bp):
CAAAGAGCAGGACACCTTTTAAAGCC
Found at i:5002 original size:29 final size:29
Alignment explanation
Indices: 4859--5006 Score: 82
Period size: 29 Copynumber: 5.3 Consensus size: 29
4849 AAGAGCAGGA
*
4859 CACCTTTCAAAGCCCACCCAAGTTGGTGG
1 CACCTTTCAAAGCCCACACAAGTTGGTGG
* * * * * **
4888 CA-TTTTC-CAGTCCTCA-AAG-AGCAGG
1 CACCTTTCAAAGCCCACACAAGTTGGTGG
4913 ACACCTCTT-AAAGCCCACACAAGTTGGTGG
1 -CACCT-TTCAAAGCCCACACAAGTTGGTGG
* * **
4943 CACCTTT--TAGTCCC-CA-AAG-AGCAGG
1 CACCTTTCAAAG-CCCACACAAGTTGGTGG
4968 ACACCTTTCAAAGCCCACACAAGTTGGTGG
1 -CACCTTTCAAAGCCCACACAAGTTGGTGG
4998 CACCTTTCA
1 CACCTTTCA
5007 GTCCTCAAAG
Statistics
Matches: 83, Mismatches: 23, Indels: 26
0.63 0.17 0.20
Matches are distributed among these distances:
25 6 0.07
26 15 0.18
27 13 0.16
28 21 0.25
29 22 0.27
30 6 0.07
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.22
Consensus pattern (29 bp):
CACCTTTCAAAGCCCACACAAGTTGGTGG
Found at i:5868 original size:21 final size:21
Alignment explanation
Indices: 5842--5898 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
5832 AAATTATCCA
5842 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
5863 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
5884 AATGTATCGATACAT
1 AATGTATCGATACAT
5899 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:6060 original size:13 final size:13
Alignment explanation
Indices: 6042--6067 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6032 CATTTTTCTG
6042 TGTATCGATACAT
1 TGTATCGATACAT
6055 TGTATCGATACAT
1 TGTATCGATACAT
6068 AGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6064 original size:33 final size:33
Alignment explanation
Indices: 6022--6088 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
6012 GCCAAGGAAA
***
6022 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATAGATCTGTGTATCGATACAT
*
6055 TGTATCGATACATAGATCTTTGTATCGATACAT
1 TGTATCGATACATAGATCTGTGTATCGATACAT
6088 T
1 T
6089 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATAGATCTGTGTATCGATACAT
Found at i:8619 original size:31 final size:28
Alignment explanation
Indices: 8536--8608 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
8526 CTTCACAATC
*
8536 GGGGATACTCCAACCCCGTTGATCAT-C--
1 GGGGATACTCCAACCCCGTT-AT-TTCCGA
*
8563 GGGGATACTCCAACCTCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCCGA
8591 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
8609 ACTTTATTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
25 1 0.03
26 3 0.08
27 19 0.47
28 17 0.43
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCCGA
Found at i:8666 original size:51 final size:50
Alignment explanation
Indices: 8591--8811 Score: 181
Period size: 52 Copynumber: 4.3 Consensus size: 50
8581 TTATTTCCGA
* ** * **
8591 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTAATTTTTCATAATC
1 GGGGATACTCCAA-CTCGGTTTTATTTCCAAAACACCAATTTTTCATAATC
* * * * *
8642 GGGGATATTCCAATCTCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAA-CTCGGTTTTATTTCCAAAACACCAATTTTT-CATAATC
* * * * * * *
8694 AGGGATACTCAAACCCCGGTTTTATTTTCGAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAA-CTCGGTTTTATTTCCAAAACACCAATTTTTC-ATAATC
* * *
8746 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCATAGTC
1 GGGGATACTCCAACT-CGGTTTTATTTCC-AAAACACCAATTTTTCATAATC
*
8798 GAGGATACTCCAAC
1 GGGGATACTCCAAC
8812 CTTGTTATTT
Statistics
Matches: 132, Mismatches: 34, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
51 37 0.28
52 82 0.62
53 13 0.10
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (50 bp):
GGGGATACTCCAACTCGGTTTTATTTCCAAAACACCAATTTTTCATAATC
Found at i:8833 original size:28 final size:28
Alignment explanation
Indices: 8800--8871 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
8790 TCATAGTCGA
** * **
8800 GGATACTCCAACCTTGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
*
8828 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
8856 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
8872 GCTTTATTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.25
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCAGAGG
Found at i:8889 original size:263 final size:263
Alignment explanation
Indices: 8422--8917 Score: 730
Period size: 263 Copynumber: 1.9 Consensus size: 263
8412 TTCTCAATTC
* * * * *
8422 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAGACACTAATTTTCTATAATCAGGGA
1 TCCACAATCAGGGATACTCAAACCCCGATTTTATTTTCAAGACACCAATTTTCTATAATCAGGGA
*
8487 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
8552 CGTTGATCATCGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATT
131 CGTTGATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
* * *
8617 TCCAAAATATTAATTTTTCATAATCGGGGATATTCCAATCTCGGTTTTATTGCTAAAACACTAAT
196 CCCAAAATATTAATTTCTCATAATCGGGGATACTCCAATCTCGGTTTTATTGCTAAAACACTAAT
8682 TTT
261 TTT
* * *
8685 TCCACAATCAGGGATACTCAAACCCCGGTTTTATTTTCGAA-ACACCAATTTTCCTTTAATCGGG
1 TCCACAATCAGGGATACTCAAACCCCGATTTTATTTTC-AAGACACCAATTTT-CTATAATCAGG
* * *
8749 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCATAGTCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
** *
8812 CTTGTT-ATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTT
129 CCCGTTGA--TCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTT
* *
8876 TATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
192 TATTCCCAAAATATTAATTTCTCATAATCGGGGATACTCCAA
8918 CCCCGTTATT
Statistics
Matches: 207, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
261 1 0.00
262 24 0.12
263 145 0.70
264 37 0.18
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (263 bp):
TCCACAATCAGGGATACTCAAACCCCGATTTTATTTTCAAGACACCAATTTTCTATAATCAGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTGATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
CCCAAAATATTAATTTCTCATAATCGGGGATACTCCAATCTCGGTTTTATTGCTAAAACACTAAT
TTT
Found at i:8937 original size:107 final size:107
Alignment explanation
Indices: 8746--8950 Score: 243
Period size: 107 Copynumber: 1.9 Consensus size: 107
8736 TCCTTTAATC
* * * *
8746 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCATAGTCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
**
8811 CCTTGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGA
* * *** * *
8854 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
*
8918 CCCCGTTATTTTCGA-GGGGATACTCCAATCCCG
66 CCCCGTTA-TTTC-ACGGGGATACTCCAACCCCG
8951 ATTTTTTTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
107 55 0.68
108 25 0.31
109 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAA
CCCCGTTATTTCACGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:9056 original size:80 final size:77
Alignment explanation
Indices: 8825--9059 Score: 236
Period size: 80 Copynumber: 2.9 Consensus size: 77
8815 GTTATTTCAT
* * * *
8825 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC-GTTTTATT-CCAAAACAT
* *
8890 TGATTTCTCATAAT
64 TGATTTCTCACAAC
* * * * * *
8904 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTTTCTAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG---TTTTATTCCAAAACA
*
8969 TCGATTTCTCACAAC
63 TTGATTTCTCACAAC
* * * *
8984 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCCCGTTATTATCTCCAAAACAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTT-TTAT-TCCAAAACAT
*
9049 TAAATTTCTCA
64 T-GATTTCTCA
9060 TCGGGAAATA
Statistics
Matches: 125, Mismatches: 25, Indels: 11
0.78 0.16 0.07
Matches are distributed among these distances:
77 2 0.02
78 4 0.03
79 49 0.39
80 65 0.52
81 5 0.04
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (77 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTTTTATTCCAAAACATTG
ATTTCTCACAAC
Found at i:14379 original size:13 final size:13
Alignment explanation
Indices: 14361--14387 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14351 ACATTATGCT
14361 TTGTATCGATACA
1 TTGTATCGATACA
14374 TTGTATCGATACA
1 TTGTATCGATACA
14387 T
1 T
14388 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:23234 original size:1 final size:1
Alignment explanation
Indices: 23230--23290 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
23220 CATCCTTTGC
* * ** * * * *
23230 AAAAAAAAAAAAAACAAAAATAGTAAAAAAAATAAAAATAAAAAAAAAAACAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
23291 GGGAATAAGG
Statistics
Matches: 45, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.87, C:0.05, G:0.02, T:0.07
Consensus pattern (1 bp):
A
Found at i:23259 original size:17 final size:14
Alignment explanation
Indices: 23230--23279 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 14
23220 CATCCTTTGC
23230 AAAAAAAAAA-AAA
1 AAAAAAAAAATAAA
* * *
23243 ACAAAAATAGTAAA
1 AAAAAAAAAATAAA
23257 AAAAATAAAAATAAA
1 AAAAA-AAAAATAAA
23272 AAAAAAAA
1 AAAAAAAA
23280 CAAACAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
13 7 0.24
14 10 0.34
15 12 0.41
ACGTcount: A:0.88, C:0.02, G:0.02, T:0.08
Consensus pattern (14 bp):
AAAAAAAAAATAAA
Found at i:23290 original size:18 final size:18
Alignment explanation
Indices: 23233--23283 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
23223 CCTTTGCAAA
23233 AAAAAAAAAAACAAAAAT
1 AAAAAAAAAAACAAAAAT
** *
23251 AGTAAAAAAAATAAAAAT
1 AAAAAAAAAAACAAAAAT
23269 AAAAAAAAAAACAAA
1 AAAAAAAAAAACAAA
23284 CAAAAAAGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.86, C:0.04, G:0.02, T:0.08
Consensus pattern (18 bp):
AAAAAAAAAAACAAAAAT
Found at i:24137 original size:27 final size:28
Alignment explanation
Indices: 24098--24163 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 28
24088 TGGTGTCATT
** *
24098 TCCCTAGAAAAGTCT-ATACAGCCTGCAA
1 TCCCTAGTGAAGTCTGA-ACAGCCTACAA
* *
24126 -CCCTAGTGAAGTTTGAATAGCCTACAA
1 TCCCTAGTGAAGTCTGAACAGCCTACAA
24153 TCCCTAGTGAA
1 TCCCTAGTGAA
24164 AAAAGGGTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
27 20 0.65
28 11 0.35
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (28 bp):
TCCCTAGTGAAGTCTGAACAGCCTACAA
Found at i:24768 original size:34 final size:34
Alignment explanation
Indices: 24725--24800 Score: 143
Period size: 34 Copynumber: 2.2 Consensus size: 34
24715 AAACAAGCTA
24725 GTGGCACCCAATCTTTTTAAGCCAACCAATGTCG
1 GTGGCACCCAATCTTTTTAAGCCAACCAATGTCG
*
24759 GTGGCACCCAATCTTTTTAAGCCCACCAATGTCG
1 GTGGCACCCAATCTTTTTAAGCCAACCAATGTCG
24793 GTGGCACC
1 GTGGCACC
24801 AAGTTCATAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (34 bp):
GTGGCACCCAATCTTTTTAAGCCAACCAATGTCG
Found at i:24987 original size:32 final size:32
Alignment explanation
Indices: 24867--25150 Score: 309
Period size: 32 Copynumber: 9.0 Consensus size: 32
24857 CTAGTAGAGA
*
24867 AACCCTTC--AAAGCCCACACAAGTTAGTGGC
1 AACCCTTCTTAAAGCCCACACAAGTTGGTGGC
* * *
24897 AACCCTTC--AAAACCCACACAAGTCGATGGC
1 AACCCTTCTTAAAGCCCACACAAGTTGGTGGC
* * *
24927 AACCC--CTTCAAAGCCCACATAAGCTGGTGTC
1 AACCCTTCTT-AAAGCCCACACAAGTTGGTGGC
*
24958 AACCCTTCTTAAAGCCTACACAAGTTGGTGGC
1 AACCCTTCTTAAAGCCCACACAAGTTGGTGGC
* *
24990 CACCCTT-TCAAAAGCCCACACAAGTTGGTGGC
1 AACCCTTCT-TAAAGCCCACACAAGTTGGTGGC
*
25022 AA-CCTTCTTTAAAGCCCACATAAGTTGGTGGC
1 AACCCTTC-TTAAAGCCCACACAAGTTGGTGGC
25054 AA-CCTTCTTCAAAGCCCACACAAGTTGGTGGC
1 AACCCTTCTT-AAAGCCCACACAAGTTGGTGGC
*
25086 AACCCTTCTTAAAGCCCACACAAGTCGGTGGC
1 AACCCTTCTTAAAGCCCACACAAGTTGGTGGC
* * **
25118 AACCCTT-TCAAAAACCCACACAAGCCGGTGGC
1 AACCCTTCT-TAAAGCCCACACAAGTTGGTGGC
25150 A
1 A
25151 TCTCTTTTTA
Statistics
Matches: 218, Mismatches: 25, Indels: 20
0.83 0.10 0.08
Matches are distributed among these distances:
28 1 0.00
30 31 0.14
31 29 0.13
32 146 0.67
33 11 0.05
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (32 bp):
AACCCTTCTTAAAGCCCACACAAGTTGGTGGC
Found at i:25019 original size:64 final size:63
Alignment explanation
Indices: 24867--25150 Score: 360
Period size: 64 Copynumber: 4.5 Consensus size: 63
24857 CTAGTAGAGA
* * *
24867 AACCC-TTCAAAGCCCACACAAGTTAGTGGCAACCCTTC--AAAACCCACACAAGTCGATGGC
1 AACCCTTTCAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGC
* * * * * *
24927 AACCCCTTCAAAGCCCACATAAGCTGGTGTCAACCCTTCTTAAAGCCTACACAAGTTGGTGGC
1 AACCCTTTCAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGC
* * *
24990 CACCCTTTCAAAAGCCCACACAAGTTGGTGGCAA-CCTTCTTTAAAGCCCACATAAGTTGGTGGC
1 AACCCTTTC-AAAGCCCACACAAGTTGGTGGCAACCCTTC-TTAAAGCCCACACAAGTCGGTGGC
*
25054 AACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGC
1 AACCCT-TTCAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGC
* **
25118 AACCCTTTCAAAAACCCACACAAGCCGGTGGCA
1 AACCCTTTC-AAAGCCCACACAAGTTGGTGGCA
25151 TCTCTTTTTA
Statistics
Matches: 193, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
60 5 0.03
61 29 0.15
63 33 0.17
64 118 0.61
65 8 0.04
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (63 bp):
AACCCTTTCAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGC
Found at i:25068 original size:96 final size:95
Alignment explanation
Indices: 24871--25150 Score: 377
Period size: 96 Copynumber: 2.9 Consensus size: 95
24861 TAGAGAAACC
* *
24871 CTTCAAAGCCCACACAAGTTAGTGGCAACCCTTCAAAA-CCCACACAAGTCGATGGCAACCCCTT
1 CTTCAAAGCCCACACAAGTTGGTGGCAACCCTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTT
*
24935 CAAAGCCCACATAAGCTGGTGTCAACCCTT
66 CAAAGCCCACATAAGCTGGTGGCAACCCTT
* * * *
24965 CTT-AAAGCCTACACAAGTTGGTGGCCACCCTTTCAAAAGCCCACACAAGTTGGTGGCAACCTTC
1 CTTCAAAGCCCACACAAGTTGGTGGCAACCC-TTCAAAAGCCCACACAAGTCGGTGGCAACC-CC
* *
25029 TTTAAAGCCCACATAAGTTGGTGGCAA-CCTT
64 TTCAAAGCCCACATAAGCTGGTGGCAACCCTT
* *
25060 CTTCAAAGCCCACACAAGTTGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCAAAGCCCACACAAGTTGGTGGCAACCCTTC-AAAAGCCCACACAAGTCGGTGGCAACCCCT
* * *
25125 TCAAAAACCCACACAAGCCGGTGGCA
65 TC-AAAGCCCACATAAGCTGGTGGCA
25151 TCTCTTTTTA
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
93 24 0.15
94 10 0.06
95 32 0.20
96 94 0.59
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (95 bp):
CTTCAAAGCCCACACAAGTTGGTGGCAACCCTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTT
CAAAGCCCACATAAGCTGGTGGCAACCCTT
Found at i:25448 original size:104 final size:104
Alignment explanation
Indices: 25247--25607 Score: 390
Period size: 104 Copynumber: 3.5 Consensus size: 104
25237 CACATTGGCA
* * * *
25247 CAAGCCCAATATCGCTGACCTTGAAT-AAGCATATTGGCACCTTTATCATCTTTAAGTCTAATGT
1 CAAGTCCAATATCGATGACCTTGAATCAA-CATATTAGCACCTTTATCATATTTAAGTCTAATGT
* * * *
25311 TGCTAGACTTGAATCAGCACATTGGCACTTTCTTCTTTCT
65 TGCTGGCCTTGAATCAGCACATTAGCACCTTCTTCTTTCT
* *
25351 CAAGTCCAATATCGATGGCCTTGAATCAACAAATTAGCACCTTTATCATATTTAAGTCTAATGTT
1 CAAGTCCAATATCGATGACCTTGAATCAACATATTAGCACCTTTATCATATTTAAGTCTAATGTT
* *
25416 GCTGGCCTTGAATTAGCAGATTAGCACCTTCTTCTTTCT
66 GCTGGCCTTGAATCAGCACATTAGCACCTTCTTCTTTCT
* ** *
25455 CAAGTCCAATATC-ACTAACCTTGAATCAACATATTAGCACCTTTGCCATTTTTAAGTCTAATGT
1 CAAGTCCAATATCGA-TGACCTTGAATCAACATATTAGCACCTTTATCATATTTAAGTCTAATGT
* * * * *
25519 CGTTGGCCTTGAGTCAGTACATTGGCACCTT-TGTCATCTT-T
65 TGCTGGCCTTGAATCAGCACATTAGCACCTTCT-TC-T-TTCT
* * * * * * *
25560 -AAGCCCAATATCGTTGGCCTTGAATTAGCATATTGGCACCCTTATCAT
1 CAAGTCCAATATCGATGACCTTGAATCAACATATTAGCACCTTTATCAT
25608 TCTTCTCATT
Statistics
Matches: 216, Mismatches: 35, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
103 2 0.01
104 208 0.96
105 4 0.02
106 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.35
Consensus pattern (104 bp):
CAAGTCCAATATCGATGACCTTGAATCAACATATTAGCACCTTTATCATATTTAAGTCTAATGTT
GCTGGCCTTGAATCAGCACATTAGCACCTTCTTCTTTCT
Found at i:25595 original size:52 final size:51
Alignment explanation
Indices: 25252--25599 Score: 254
Period size: 52 Copynumber: 6.7 Consensus size: 51
25242 TGGCACAAGC
* *
25252 CCAATATCGCTGACCTTGAATAAGCATATTGGCACCTTTATCATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCATCTTTAAGT
* * * * * * *
25304 CTAATGTTGCTAGACTTGAATCAGCACATTGGCA-C-TTTCTTCTTTCTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATC-TT-T-AAGT
* * * * *
25356 CCAATATCGATGGCCTTGAATCAACAAATTAGCACCTTTATCATATTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCATCTTTAAGT
* * * * * *
25408 CTAATGTTGCTGGCCTTGAATTAGCAGATTAGCACCTTCTTC-T-TTCTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCATCTT-T-AAGT
* ** * * * *
25460 CCAATATCACTAACCTTGAATCAACATATTAGCACCTTTGCCATTTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCATCTTTAAGT
* * * * * * *
25512 CTAATGTCGTTGGCCTTGAGTCAGTACATTGGCACCTTTGTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCATCTTTAAGT
* *
25564 CCAATATCGTTGGCCTTGAATTAGCATATTGGCACC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
25600 CTTATCATTC
Statistics
Matches: 227, Mismatches: 57, Indels: 24
0.74 0.19 0.08
Matches are distributed among these distances:
49 4 0.02
50 6 0.03
51 5 0.02
52 198 0.87
53 5 0.02
54 6 0.03
55 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.35
Consensus pattern (51 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGT
Found at i:30591 original size:16 final size:16
Alignment explanation
Indices: 30563--30596 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
30553 AACTTTATTC
30563 TTTCCATTTTTTTTCAT
1 TTTCCATTTTTTTT-AT
30580 TTTCCA-TTTTTTTAT
1 TTTCCATTTTTTTTAT
30595 TT
1 TT
30597 CATCTTGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 7 0.41
17 6 0.35
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCCATTTTTTTTAT
Found at i:30855 original size:21 final size:21
Alignment explanation
Indices: 30831--30882 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
30821 TAATACAGTG
30831 TTTCTTTATTTC-TTTATCTTT
1 TTTCTTT-TTTCATTTATCTTT
*
30852 TTTCTTTTTTCATTTTTCTTT
1 TTTCTTTTTTCATTTATCTTT
30873 TTTCTTTTTT
1 TTTCTTTTTT
30883 TTCTTACTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTCTTTTTTCATTTATCTTT
Found at i:30859 original size:7 final size:7
Alignment explanation
Indices: 30831--30882 Score: 70
Period size: 7 Copynumber: 7.4 Consensus size: 7
30821 TAATACAGTG
30831 TTTCTTT
1 TTTCTTT
30838 ATTTC-TT
1 -TTTCTTT
*
30845 TATCTTT
1 TTTCTTT
30852 TTTCTTT
1 TTTCTTT
*
30859 TTTCATT
1 TTTCTTT
30866 TTTCTTT
1 TTTCTTT
30873 TTTCTTT
1 TTTCTTT
30880 TTT
1 TTT
30883 TTCTTACTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
6 3 0.08
7 32 0.82
8 4 0.10
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTCTTT
Found at i:32135 original size:61 final size:62
Alignment explanation
Indices: 32021--32137 Score: 148
Period size: 61 Copynumber: 1.9 Consensus size: 62
32011 GGTGAAATTA
* * ** *
32021 ATGTGATGTCAAAGAAAAAGTTATGACAGTTGGATGTGTACATGTATGCATGTAATTCATGC
1 ATGTAATGTCAAAGAAAAAGTTATGACAGTTAGATGAATACATGCATGCATGTAATTCATGC
* *
32083 ATGTAATGTCAAAG-GAAAGTTATGACAGTTAGATGAAATA-ATGCATGTATGTAAT
1 ATGTAATGTCAAAGAAAAAGTTATGACAGTTAGATG-AATACATGCATGCATGTAAT
32138 ACAAACAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
61 32 0.68
62 15 0.32
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (62 bp):
ATGTAATGTCAAAGAAAAAGTTATGACAGTTAGATGAATACATGCATGCATGTAATTCATGC
Found at i:32548 original size:131 final size:131
Alignment explanation
Indices: 32308--32549 Score: 306
Period size: 131 Copynumber: 1.8 Consensus size: 131
32298 AATATATGAT
* * * * * * ** *
32308 ATGAGTGAATGCATGTATGTATTCATATATGCAGATGAGTGCAAAGATGAAATTAATGTAATGTC
1 ATGAATGAATGCATATATATATTCATATATGCAAATAAGTGCAAAAATGAAATTAATGTAACATA
** *
32373 AAAGAAAAAGGTATAACAAAATAATATTAACAACTACATAAAAAGGTCCGGAGATAAGTGCATGT
66 AAAGAAAAAGGTATAACAAAATAATACAAACAAATACATAAAAAGGTCCGGAGATAAGTGCATGT
32438 C
131 C
* *
32439 ATGAATGAATGCATATATATATTCATGTATGTAAATAAGTGCAAAAATGAAATTAATGTAACATA
1 ATGAATGAATGCATATATATATTCATATATGCAAATAAGTGCAAAAATGAAATTAATGTAACATA
* * * *
32504 AAAG-AAAAGTTATAATAAAATCATACAAACAAATATATACAAAAGG
66 AAAGAAAAAGGTATAACAAAATAATACAAACAAATACATA-AAAAGG
32550 GCTTATCATC
Statistics
Matches: 92, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
130 28 0.30
131 64 0.70
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.26
Consensus pattern (131 bp):
ATGAATGAATGCATATATATATTCATATATGCAAATAAGTGCAAAAATGAAATTAATGTAACATA
AAAGAAAAAGGTATAACAAAATAATACAAACAAATACATAAAAAGGTCCGGAGATAAGTGCATGT
C
Found at i:35315 original size:76 final size:78
Alignment explanation
Indices: 34976--35350 Score: 349
Period size: 79 Copynumber: 4.8 Consensus size: 78
34966 ACCTCGGAGC
* * * * * *
34976 TGGAGTATCCCCGATTATGA-AAAA-TCAGTGTTTTGGAAGTAAAATCGGGATTTGAGTATCCCC
1 TGGAGTATCCCTGATTGTGAGAAAATTGA-TGTTTTAGAAATAAAATCGGG-TTGGAGTAT-CCC
*
35039 TCGAAAATAACAGGGT
63 TCGAAAATAATAGGGT
* * * *
35055 TGGAGTATCCTTGATTAT-AGAAAATCGATATTTTA-AATATAAAATCGGGGTTGGAGTATCCCT
1 TGGAGTATCCCTGATTGTGAGAAAATTGATGTTTTAGAA-ATAAAATC-GGGTTGGAGTATCCC-
35118 TCGAAAATAATAGGGT
63 TCGAAAATAATAGGGT
* * * *
35134 TGGAGTATCCCTGATT-AGAGAAAATTGGTGTTTT-GAAAATAAAATAGGGATCGGAGTATCCCC
1 TGGAGTATCCCTGATTGTGAGAAAATTGATGTTTTAG-AAATAAAATCGGG-TTGGAGTAT-CCC
35197 TCGAAAATAATAGGGT
63 TCGAAAATAATAGGGT
** * * ** *
35213 TTTAGTATCCCCGAATGTGA-AAAATTGATGTTTTAGAAATAAAGCCGGGCTTGGAGTAT-CGT-
1 TGGAGTATCCCTGATTGTGAGAAAATTGATGTTTTAGAAATAAAATCGGG-TTGGAGTATCCCTC
35275 GAAAATAAT-GAGGT
65 GAAAATAATAG-GGT
* *
35289 TGGAGTATCCCTGATTGTGAG-AAATTGGTGTTTTGGAAATAAAATCGGAGTTGGAGTATCCC
1 TGGAGTATCCCTGATTGTGAGAAAATTGATGTTTTAGAAATAAAATCGG-GTTGGAGTATCCC
35351 CGATTGTGAA
Statistics
Matches: 243, Mismatches: 37, Indels: 34
0.77 0.12 0.11
Matches are distributed among these distances:
75 1 0.00
76 60 0.25
77 4 0.02
78 9 0.04
79 157 0.65
80 12 0.05
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (78 bp):
TGGAGTATCCCTGATTGTGAGAAAATTGATGTTTTAGAAATAAAATCGGGTTGGAGTATCCCTCG
AAAATAATAGGGT
Found at i:35347 original size:155 final size:156
Alignment explanation
Indices: 34976--35351 Score: 431
Period size: 158 Copynumber: 2.4 Consensus size: 156
34966 ACCTCGGAGC
* * ** * *
34976 TGGAGTATCCCCGATTATGAAAAATCAGTGTTTTGGAAGTAAAATCGGGATTTGAGTATCCCCTC
1 TGGAGTATCCCTGATT-TGAGAAATTGGTGTTTTGGAAATAAAATCGGGATTGGAGTATCCCCTC
** * * *
35041 GAAAATAACAGGGTTGGAGTATCCTTGATTATAGAAAATCGATATTTTAAATATAAAATCGGGGT
65 GAAAATAACAGGGTTGGAGTATCCCCGAATATAGAAAATCGATATTTTAAATATAAAACCGGGCT
*
35106 TGGAGTATCCCTTCGAAAATAATAGGGT
130 TGGAGTAT-CCGTCGAAAATAATAGGGT
* * * *
35134 TGGAGTATCCCTGATTAGAGAAAATTGGTGTTTTGAAAATAAAATAGGGATCGGAGTATCCCCTC
1 TGGAGTATCCCTGATTTGAG-AAATTGGTGTTTTGGAAATAAAATCGGGATTGGAGTATCCCCTC
* ** * * * *
35199 GAAAATAATAGGGTTTTAGTATCCCCGAATGT-GAAAAATTGATGTTTTAGAA-ATAAAGCCGGG
65 GAAAATAACAGGGTTGGAGTATCCCCGAATATAG-AAAATCGATATTTTA-AATATAAAACCGGG
35262 CTTGGAGTAT-CGT-GAAAATAAT-GAGGT
128 CTTGGAGTATCCGTCGAAAATAATAG-GGT
35289 TGGAGTATCCCTGATTGTGAGAAATTGGTGTTTTGGAAATAAAATC-GGAGTTGGAGTATCCCC
1 TGGAGTATCCCTGATT-TGAGAAATTGGTGTTTTGGAAATAAAATCGGGA-TTGGAGTATCCCC
35352 GATTGTGAAA
Statistics
Matches: 185, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
154 4 0.02
155 63 0.34
156 5 0.03
157 3 0.02
158 108 0.58
159 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (156 bp):
TGGAGTATCCCTGATTTGAGAAATTGGTGTTTTGGAAATAAAATCGGGATTGGAGTATCCCCTCG
AAAATAACAGGGTTGGAGTATCCCCGAATATAGAAAATCGATATTTTAAATATAAAACCGGGCTT
GGAGTATCCGTCGAAAATAATAGGGT
Found at i:35350 original size:51 final size:52
Alignment explanation
Indices: 35287--35404 Score: 168
Period size: 51 Copynumber: 2.3 Consensus size: 52
35277 AAATAATGAG
* * * *
35287 GTTGGAGTATCCCTGATTGTGAGAAATTGGTGTTTTGGAAATAAAATC-GGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACCAGGA
* *
35338 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAGTAGAACCAGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACCAGGA
35390 -TTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
35405 GATGAAAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 57 0.95
52 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.31
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACCAGGA
Found at i:37724 original size:20 final size:20
Alignment explanation
Indices: 37696--37734 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
37686 TGGTAAAAAA
*
37696 TTTAGAATGTATCGATACAT
1 TTTAAAATGTATCGATACAT
37716 TTTAAAATGTATCGATACA
1 TTTAAAATGTATCGATACA
37735 AGCTAGGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (20 bp):
TTTAAAATGTATCGATACAT
Found at i:37811 original size:20 final size:20
Alignment explanation
Indices: 37786--37837 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
37776 ATCGATATAT
*
37786 TGTATCGATAGAATG-AACAA
1 TGTATCGATACAATGCAA-AA
*
37806 TGTATCAATACAATGCAAAA
1 TGTATCGATACAATGCAAAA
37826 TGTATCGATACA
1 TGTATCGATACA
37838 TCTGGGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.27
Consensus pattern (20 bp):
TGTATCGATACAATGCAAAA
Found at i:41586 original size:40 final size:41
Alignment explanation
Indices: 41542--41638 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 41
41532 CCACTTTTTG
* * *
41542 AGGACAAAGGAAAAGAG-AATGAAATAG-GTCTTGCTCCTTA
1 AGGACAAAGGAAAAAAGAAAAGAAA-AGTGTCTTGCTCATTA
* *
41582 AGGACAAAGGAAAAAAGAAAAGGAAAGTGTCTTGCTTATTA
1 AGGACAAAGGAAAAAAGAAAAGAAAAGTGTCTTGCTCATTA
41623 AGGACAAAGTGAAAAA
1 AGGACAAAG-GAAAAA
41639 GAGTACGTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 18 0.37
41 25 0.51
42 6 0.12
ACGTcount: A:0.48, C:0.09, G:0.25, T:0.18
Consensus pattern (41 bp):
AGGACAAAGGAAAAAAGAAAAGAAAAGTGTCTTGCTCATTA
Found at i:41679 original size:42 final size:41
Alignment explanation
Indices: 41628--41752 Score: 115
Period size: 42 Copynumber: 3.0 Consensus size: 41
41618 TATTAAGGAC
* *
41628 AAAGTGAAAAAGAGTACGTCCTACTCTTCGAGGACAAAGGAAA
1 AAAG-GAAAAAGAGTGCGTCCTACTCTTCGAGGACAAAAG-AA
* * * * * *
41671 AAAGGAAAATGAAATGCGTCTTGCTTTTCGAAGACAAAAGAA
1 AAAGGAAAAAG-AGTGCGTCCTACTCTTCGAGGACAAAAGAA
* * *
41713 AGAGGAAAACAAAGTGCGTCCTACTCTTTGAGGACAAAAG
1 AAAGGAAAA-AGAGTGCGTCCTACTCTTCGAGGACAAAAG
41753 GGAAGAGAAG
Statistics
Matches: 63, Mismatches: 17, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
42 38 0.60
43 25 0.40
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.18
Consensus pattern (41 bp):
AAAGGAAAAAGAGTGCGTCCTACTCTTCGAGGACAAAAGAA
Found at i:41707 original size:43 final size:43
Alignment explanation
Indices: 41644--41809 Score: 133
Period size: 43 Copynumber: 3.8 Consensus size: 43
41634 AAAAAGAGTA
* *
41644 CGTCCTACTCTTCGAGGACAAAGGAAAAAAGGAAAATGAAATG
1 CGTCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAATGAAATG
* * * * *
41687 CGTCTTGCTTTTCGAAGACAAAAG-AAAGAGGAAAA-CAAAGTG
1 CGTCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAATGAAA-TG
* * * *
41729 CGTCCTACTCTTT-GAGGACAAAAGGGAAGAGAAGG-GAATGAAGTG
1 CGTCCTGCT-TTTCGAGGAC-AAA-GGAA-AAAAGGAAAATGAAATG
* * *
41774 TGTCCTGCTTTTTGAGGACAAAGGAGAAAAGGAAAA
1 CGTCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAA
41810 GGCGTCCTGC
Statistics
Matches: 93, Mismatches: 21, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
41 3 0.03
42 29 0.31
43 30 0.32
44 7 0.08
45 18 0.19
46 6 0.06
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (43 bp):
CGTCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAATGAAATG
Found at i:41801 original size:40 final size:38
Alignment explanation
Indices: 41723--41830 Score: 108
Period size: 45 Copynumber: 2.6 Consensus size: 38
41713 AGAGGAAAAC
* *
41723 AAAGTGCGTCCTACTCTTTGAGGACAAAAGGGAAGAGAAGGGA
1 AAAG-GCGTCCTGCTCTTTGAGGAC-AAA-GG-AGA-AAAGGA
* *
41766 ATGAAGTGTGTCCTGCTTTTTGAGGACAAAGGAGAAAAGGA
1 A--AAG-GCGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGA
41807 AAAGGCGTCCTGCTCTTTGAGGAC
1 AAAGGCGTCCTGCTCTTTGAGGAC
41831 TAAAAAGTGC
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
38 18 0.32
39 3 0.05
41 6 0.11
42 3 0.05
43 3 0.05
44 3 0.05
45 21 0.37
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.21
Consensus pattern (38 bp):
AAAGGCGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGA
Found at i:41874 original size:61 final size:60
Alignment explanation
Indices: 41800--42243 Score: 417
Period size: 61 Copynumber: 7.6 Consensus size: 60
41790 GACAAAGGAG
*
41800 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
1 AAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* * ** * *
41861 GAAAAGAAAAGGCGTCCTGTTGTTTGAGGACTGGAAGGTACCACCAACTTGTGTGGGCTTT
1 -AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* ** * * * *
41922 GCAAAAAGAAAA--CATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTCGAGTGGTCTTT
1 ---AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
41983 AAAAGGAGAAA-GCATCCTGCTCTTTGAGCACTAAAAAATGCCACAAACTTGTGTGGGCTTT
1 AAAA-GA-AAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
42044 ----G-AAAGGCGTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
42099 -----AAAATGTGTCTTGCTCTTTGAGGGCTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTTT
* *
42154 AAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAA-TTGTATGGGCTTT
1 AAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTTT
*
42215 ---A-AAAAGG-GTCCTACTCTTTGAGGACTAAA
1 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAA
42244 GGGCGAAAGG
Statistics
Matches: 331, Mismatches: 36, Indels: 38
0.82 0.09 0.09
Matches are distributed among these distances:
54 5 0.02
55 111 0.34
56 11 0.03
58 5 0.02
59 2 0.01
60 3 0.01
61 172 0.52
62 13 0.04
63 9 0.03
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (60 bp):
AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:42099 original size:116 final size:116
Alignment explanation
Indices: 41805--42241 Score: 416
Period size: 116 Copynumber: 3.8 Consensus size: 116
41795 AGGAGAAAAG
41805 GAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGA-
1 GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGAG
* * * ** *
41868 AAAGGCGTCCTGTTGTTTGAGGACTGGAAGGTACCACCAACTTGTGTGGGCTTT
65 AAA-GC-TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* * * * * *
41922 GCAAAAAGAAAACATCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTCGAGTGGTCTTTAAA
1 G--AAAAG---GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTCGTGTGGGCTTTAAA
* * *
41986 AGGAGAAAGCATCCTGCTCTTTGAGCACTAAAAAATGCCACAAACTTGTGTGGGCTTT
61 A-GAGAAAGC-TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* *
42044 G-AAAGGCGTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAA-TG-
1 GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAGA
* * *
42105 -TG-TCTTGCTCTTTGAGGGCTAGAAAATGCCACCAACTTGTGTGGGCTTT
66 AAGCTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* * *
42154 AAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAA-TTGTATGGGCTTTAAA
1 -----GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTCGTGTGGGCTTTAAA
* *
42218 A-AG---GGTCCTACTCTTTGAGGACTA
61 AGAGAAAGCTCCTGCTCTTTGAGGACTA
42242 AAGGGCGAAA
Statistics
Matches: 267, Mismatches: 36, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
110 42 0.16
112 1 0.00
114 1 0.00
115 2 0.01
116 106 0.40
117 13 0.05
119 9 0.03
121 4 0.01
122 86 0.32
123 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (116 bp):
GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAGA
AAGCTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:42157 original size:27 final size:27
Alignment explanation
Indices: 42072--42157 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
42062 TGAGGACTAG
42072 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
*** *** * * **
42099 AAAATGTGTCTTGCTCTTTGAGGGCTAG
1 AAAATGCCACCAACT-TGTGTGGGCTTT
42127 AAAATGCCACCAACTTGTGTGGGCTTT
1 AAAATGCCACCAACTTGTGTGGGCTTT
42154 AAAA
1 AAAA
42158 GGAAAAGGTG
Statistics
Matches: 38, Mismatches: 20, Indels: 2
0.63 0.33 0.03
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (27 bp):
AAAATGCCACCAACTTGTGTGGGCTTT
Found at i:42392 original size:155 final size:155
Alignment explanation
Indices: 42110--42398 Score: 431
Period size: 155 Copynumber: 1.9 Consensus size: 155
42100 AAATGTGTCT
* ** *
42110 TGCTCTTTGAGGGCTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCT
1 TGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACT
*
42175 CTTTGAGGACTAGAAAAGTGCCACCAATTGTATGGGCTTTAAAAAGGGTCCTACTCTTTGAGGAC
66 CTTTGAGGACTAGAAAAGTGCCACCAATTGTATGGGCTTTAAAAAGGATCCTACTCTTTGAGGAC
42240 TAAAGGGCGAAAGGAGAGAGCGTCC
131 TAAAGGGCGAAAGGAGAGAGCGTCC
* * *
42265 TGCTCTTTGAGGACTA-AGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTAC
1 TGCTCTTTGAGGACTAGA-AAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTAC
* * *
42329 TCTTTGAGGACT-GAGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGCATCCTGCTCTTTGAG
65 TCTTTGAGGACTAGAAAAGTGCCACCAA-TTGTATGGGCTTTAAAAAGG-ATCCTACTCTTTGAG
42392 GACTAAA
128 GACTAAA
42399 AAATGCCACC
Statistics
Matches: 120, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
154 21 0.17
155 99 0.82
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (155 bp):
TGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACT
CTTTGAGGACTAGAAAAGTGCCACCAATTGTATGGGCTTTAAAAAGGATCCTACTCTTTGAGGAC
TAAAGGGCGAAAGGAGAGAGCGTCC
Found at i:42406 original size:55 final size:55
Alignment explanation
Indices: 42262--42508 Score: 296
Period size: 55 Copynumber: 4.4 Consensus size: 55
42252 GGAGAGAGCG
* *
42262 TCCTGCTCTTTGAGGACTAAGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCA
* * *
42323 TCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * *
42378 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * * * * * *
42433 TCCTGCTCTTTGAGGACTGAAAGGTACGACCAACTTGTGTAGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
42488 TCTTGCTCTTTGAGGACTAAA
1 TCCTGCTCTTTGAGGACTAAA
42509 GGGTGAAAGG
Statistics
Matches: 169, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
55 123 0.73
56 1 0.01
58 1 0.01
61 44 0.26
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:42423 original size:210 final size:207
Alignment explanation
Indices: 42049--42456 Score: 524
Period size: 210 Copynumber: 1.9 Consensus size: 207
42039 GCTTTGAAAG
* * * *
42049 GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAATGTGTCTTGCT
1 GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGGGTCCTACT
*
42114 CTTTGAGGGCTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTT
66 CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGG-AAA---GTCCTGCTCTTT
*
42179 GAGGACTAGAAAAGTGCCACCAATTGTATGGGCTTTAAAAAGG-GTCCTACTCTTTGAGGACT-A
127 GAGGACTAGAAAAATGCCACCAATTGTATGGGCTTT-AAAAGGCGTCCTACTCTTTGAGGACTGA
42242 AAGGGCGAAAGGAGAGA
191 AAGGGCGAAAGGAGAGA
* *
42259 GCGTCCTGCTCTTTGAGGACTA-AGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGAGAAGGCA
1 GCGTCCTGCTCTTTGAGGACTAGA-AAATGCCACCAACTTGTGTGGGCTTTAAAA--AG--GG--
* *
42323 TCCTACTCTTTGAGGACT-GAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG-CA-TCCTGCT
59 TCCTACTCTTTGAGGACTAGA-AAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGTCCTGCT
* * *
42385 CTTTGAGGACTA-AAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
123 CTTTGAGGACTAGAAAAATGCCACCAA-TTGTATGGGCTTTAAAAGGCGTCCTACTCTTTGAGGA
42449 CTGAAAGG
187 CTGAAAGG
42457 TACGACCAAC
Statistics
Matches: 174, Mismatches: 13, Indels: 21
0.84 0.06 0.10
Matches are distributed among these distances:
209 19 0.11
210 99 0.57
211 5 0.03
212 1 0.01
214 2 0.01
215 2 0.01
216 46 0.26
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (207 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGGGTCCTACT
CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGTCCTGCTCTTTGAGG
ACTAGAAAAATGCCACCAATTGTATGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTGAAAGGG
CGAAAGGAGAGA
Found at i:42495 original size:110 final size:112
Alignment explanation
Indices: 42259--42508 Score: 335
Period size: 110 Copynumber: 2.2 Consensus size: 112
42249 AAAGGAGAGA
* * *
42259 GCGTCCTGCTCTTTGAGGACTAAGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT---A-GAGAAGGCAT
* *
42324 CCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
62 CCTACTCTTTGAGGACTGAGAAGTACCACCAACTTGTGTAGGCTTTAAAAG
* * *
42375 GCATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT-GA-AAGGCGTCCTG
1 GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTAGAGAAGGCATCCTA
* *
42438 CTCTTTGAGGACTGA-AAGGTACGACCAACTTGTGTAGGCTTTGAAAG
66 CTCTTTGAGGACTGAGAA-GTACCACCAACTTGTGTAGGCTTTAAAAG
*
42485 GCGTCTTGCTCTTTGAGGACTAAA
1 GCGTCCTGCTCTTTGAGGACTAAA
42509 GGGTGAAAGG
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
109 2 0.02
110 71 0.59
111 2 0.02
116 46 0.38
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (112 bp):
GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTAGAGAAGGCATCCTA
CTCTTTGAGGACTGAGAAGTACCACCAACTTGTGTAGGCTTTAAAAG
Found at i:42519 original size:265 final size:266
Alignment explanation
Indices: 41984--42613 Score: 832
Period size: 265 Copynumber: 2.4 Consensus size: 266
41974 GTGGTCTTTA
* * * * *
41984 AAAGGAGAAAGCATCCTGCTCTTTGAGCACTAAAAAATGCCACAAACTTGTGTGGGCTTT-----
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAAGAAGTGCCACAAACTTGTGTGGGCTTTAAAAG
* * **
42044 GAAAGGCGTCCTGCTCTTTGAGGACT-AGAAAATGCCACCAACTTGTGTGGGCTTTAAAATGTGT
66 GAAAGGCGTCCTGCTCTTTGAGGACTGAG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
* * * *
42108 CTTGCTCTTTGAGGGCTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTG
130 CCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT---A-GAAAAGGCGTCCTG
* *
42173 CTCTTTGAGGACTAGAAAAGTGCCACCAATTGTATGGGCTTTAAAAAGGGTCCTACTCTTTGAGG
191 CTCTTTGAGGACTAGAAAAGTACCACCAATTGTATAGGCTTTAAAAAGGGTCCTACTCTTTGAGG
42238 ACTAAAGGGCG
256 ACTAAAGGGCG
*
42249 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAAGAAGTGCCACTAACTTGTGTGGGCTTTAAAAG
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAAGAAGTGCCACAAACTTGTGTGGGCTTTAAAAG
* *
42314 GAGAAGGCATCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
66 GA-AAGGCGTCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
42379 CCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT-G-AAAGGCGTCCTGCTCT
130 CCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCTCT
* * * * * *
42442 TTGAGGACT-GAAAGGTACGACCAACTTGTGTAGGCTTT-GAAAGGCGTCTTGCTCTTTGAGGAC
195 TTGAGGACTAGAAAAGTACCACCAA-TTGTATAGGCTTTAAAAAGG-GTCCTACTCTTTGAGGAC
*
42505 TAAAGGGTG
258 TAAAGGGCG
*
42514 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAAGAA-GTGCCACAAACTTGTGTGGGCTTTAAAA
* * *
42578 GGAAAAGGTGTCCTGTTCTTTGAGGACTGAAAAGTG
65 GG-AAAGGCGTCCTGCTCTTTGAGGACTGAGAAGTG
42614 AAAGGAAAAA
Statistics
Matches: 323, Mismatches: 31, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
264 21 0.07
265 200 0.62
266 2 0.01
270 2 0.01
271 96 0.30
272 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (266 bp):
AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAAGAAGTGCCACAAACTTGTGTGGGCTTTAAAAG
GAAAGGCGTCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATC
CTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCTCTT
TGAGGACTAGAAAAGTACCACCAATTGTATAGGCTTTAAAAAGGGTCCTACTCTTTGAGGACTAA
AGGGCG
Found at i:43609 original size:14 final size:13
Alignment explanation
Indices: 43592--43635 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
43582 CTTTTCTCTC
*
43592 TTTTTTCTT-TTT
1 TTTTTTTTTGTTT
*
43604 TGTTTTTTTGTTT
1 TTTTTTTTTGTTT
43617 TTTTTTTGTTGTTT
1 TTTTTTT-TTGTTT
43631 TTTTT
1 TTTTT
43636 AAAAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 7 0.26
13 9 0.33
14 11 0.41
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTGTTT
Found at i:43617 original size:22 final size:22
Alignment explanation
Indices: 43592--43634 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
43582 CTTTTCTCTC
43592 TTTTTTCTTTT-TTGTTTTTTTG
1 TTTTTT-TTTTGTTGTTTTTTTG
43614 TTTTTTTTTTGTTGTTTTTTT
1 TTTTTTTTTTGTTGTTTTTTT
43635 TAAAAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.88
Consensus pattern (22 bp):
TTTTTTTTTTGTTGTTTTTTTG
Found at i:53043 original size:52 final size:52
Alignment explanation
Indices: 52913--53081 Score: 157
Period size: 52 Copynumber: 3.2 Consensus size: 52
52903 AATAACGAGG
* * * * * *
52913 TTGGAGTATCCTCGATTGT-GAAAAATTGGTATTTTTGGAAACAAAATC-GGA
1 TTGGAGTATCCCCGATTGTGGAAAAATTAG-AGTTTTGAAAATAAAACCGGGA
** *
52964 GTTGGAGTATCCCCGATTAAAGG-AAAATTAGCGTTTTGAAAATAAAACCGGGA
1 -TTGGAGTATCCCCGATT-GTGGAAAAATTAGAGTTTTGAAAATAAAACCGGGA
* ** *
53017 TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTT-AGCGATAAAACCGGGG
1 TTGGAGTATCCCCGATTGTGGAAAAATTAGAGTTTTGA-AAATAAAACCGGGA
53069 TTGGAGTATCCCC
1 TTGGAGTATCCCC
53082 TCGAAAATAA
Statistics
Matches: 97, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
51 3 0.03
52 83 0.86
53 10 0.10
54 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (52 bp):
TTGGAGTATCCCCGATTGTGGAAAAATTAGAGTTTTGAAAATAAAACCGGGA
Found at i:53127 original size:27 final size:27
Alignment explanation
Indices: 53055--53139 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
53045 AGTGTTTTAG
*
53055 CGATAAA-ACCGGGGTTGGAGTATCCCC
1 CGATAAATAACGGGGTTGGAGTAT-CCC
53082 TCGA-AAATAACGGGGTTGGAGTATCCC
1 -CGATAAATAACGGGGTTGGAGTATCCC
* *
53109 CGATGATTAACGGGGTTGGAGTATCCC
1 CGATAAATAACGGGGTTGGAGTATCCC
53136 CGAT
1 CGAT
53140 TGTGAAGAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 3 0.06
27 31 0.60
28 18 0.35
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (27 bp):
CGATAAATAACGGGGTTGGAGTATCCC
Found at i:53153 original size:212 final size:212
Alignment explanation
Indices: 52847--53250 Score: 580
Period size: 212 Copynumber: 1.9 Consensus size: 212
52837 AAAAGAAAAA
* * * *
52847 AAAATCGGGATTGCAGTATCCCCTTGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
1 AAAACCGGGATTGCAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
* *
52912 GTTGGAGTATCCTCGATTGTGAAAAATTGGT-ATTTTTGGAAACAAAATCGGAGTTGGAGTATCC
66 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGATTTTTGGAAACAAAATCGGAGTTAGAGTATCC
* *
52976 CCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGGA-TTGGAGTATCCCCGATTGTGGAA
131 CCGATTAAA-GAAAATTAGCGTTTTGAAAATAAAA-CGAGAGTTGGAATATCCCCGATTGTGGAA
53040 AAATTAGTGTTTTAGCGAT
194 AAATTAGTGTTTTAGCGAT
* * * *
53059 AAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACGGG
1 AAAACCGGGATTGCAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
* *
53123 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTATC
66 GTTGGAGTATCCCCGATTGTGAA-AAATTGGTGATTTTTGGAAACAAAATCGGAGTTAGAGTATC
* * * * **
53188 CTCGATTATAGAGAATTAGTGTTTTGAAAATAAAATTAGAGTTGGAATATCCCCGATTGTGGA
130 CCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACGAGAGTTGGAATATCCCCGATTGTGGA
53251 GAATTGAGAA
Statistics
Matches: 169, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
211 31 0.18
212 101 0.60
213 37 0.22
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (212 bp):
AAAACCGGGATTGCAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGATTTTTGGAAACAAAATCGGAGTTAGAGTATCC
CCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACGAGAGTTGGAATATCCCCGATTGTGGAAAA
ATTAGTGTTTTAGCGAT
Found at i:53222 original size:51 final size:51
Alignment explanation
Indices: 53158--53255 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
53148 AATTGGTGTT
* * * *
53158 TTTTGGAAATAAAATCGGAGTTAGAGTATCCTCGATTATAGAGAATTAGTG
1 TTTTGAAAATAAAATCAGAGTTAGAATATCCCCGATTATAGAGAATTAGTG
* * * *
53209 TTTTGAAAATAAAATTAGAGTTGGAATATCCCCGATTGTGGAGAATT
1 TTTTGAAAATAAAATCAGAGTTAGAATATCCCCGATTATAGAGAATT
53256 GAGAAAATCA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (51 bp):
TTTTGAAAATAAAATCAGAGTTAGAATATCCCCGATTATAGAGAATTAGTG
Found at i:55700 original size:13 final size:13
Alignment explanation
Indices: 55682--55706 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55672 AGAATACTTA
55682 TGTATCGATACAT
1 TGTATCGATACAT
55695 TGTATCGATACA
1 TGTATCGATACA
55707 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:55704 original size:32 final size:32
Alignment explanation
Indices: 55663--55727 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
55653 TAGCTAATTA
* *
55663 TGTATCGATAGAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
55695 TGTATCGATACAAAACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
55727 T
1 T
55728 TGGATAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:55719 original size:19 final size:18
Alignment explanation
Indices: 55660--55725 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 18
55650 CAGTAGCTAA
*
55660 TTATGTATCGATAGAATAC
1 TTATGTATCGATACAA-AC
55679 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
55694 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
55711 TTATGTATCGATACA
1 TTATGTATCGATACA
55726 TTTGGATAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 2 0.05
19 24 0.60
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:58531 original size:55 final size:55
Alignment explanation
Indices: 58448--59028 Score: 676
Period size: 55 Copynumber: 10.3 Consensus size: 55
58438 ATAAAGTGTA
* * * * * **
58448 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
58503 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * *
58558 TCCTGCTATTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
58613 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAG-G
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG-GTG
*
58668 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAG-G
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG-GTG
* * * **
58723 TCCTGCTCTTCGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* * *
58784 TCCTACTCTTTGAGGACT-AAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
* *
58843 TCCCGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
*
58902 TCCCGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
58956 TCCTGCTCTCTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
59011 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
59029 AAAAAGCAGA
Statistics
Matches: 475, Mismatches: 31, Indels: 40
0.87 0.06 0.07
Matches are distributed among these distances:
53 2 0.00
54 26 0.05
55 281 0.59
56 15 0.03
59 101 0.21
60 29 0.06
61 15 0.03
64 6 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:58635 original size:26 final size:26
Alignment explanation
Indices: 58606--58693 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
58596 GTGGGCTTTA
58606 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
58632 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
58661 AAAGAG-GTCCTGCTCTTTGGGGACTG
1 AAAG-GTGTCCTGCTCTTTGGGGACTG
58687 AAAGGTG
1 AAAGGTG
58694 CCACCAACTT
Statistics
Matches: 47, Mismatches: 6, Indels: 18
0.66 0.08 0.25
Matches are distributed among these distances:
25 4 0.09
26 17 0.36
27 6 0.13
28 6 0.13
29 10 0.21
30 4 0.09
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:60035 original size:37 final size:37
Alignment explanation
Indices: 59994--60067 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 37
59984 GCTTAAGTAG
*
59994 GTTTTTTCTTCT-CTCTTTTTCTTTGTTTTG-TTTTTTT
1 GTTTTTT-TTCTCCT-TTTTTCTTTCTTTTGCTTTTTTT
* *
60031 GTTTTTTTTTTCCTTTTTTTTTTCTTTTGCTTTTTTT
1 GTTTTTTTTCTCCTTTTTTCTTTCTTTTGCTTTTTTT
60068 TTGAAGAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 16 0.50
37 16 0.50
ACGTcount: A:0.00, C:0.12, G:0.07, T:0.81
Consensus pattern (37 bp):
GTTTTTTTTCTCCTTTTTTCTTTCTTTTGCTTTTTTT
Found at i:60040 original size:28 final size:28
Alignment explanation
Indices: 60009--60069 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
59999 TTCTTCTCTC
*
60009 TTTTT-CTTTGTTTTGTTT-TTTTGTTTTT
1 TTTTTCCTTT-TTTT-TTTCTTTTGCTTTT
60037 TTTTTCCTTTTTTTTTTCTTTTGCTTTT
1 TTTTTCCTTTTTTTTTTCTTTTGCTTTT
60065 TTTTT
1 TTTTT
60070 GAAGAGAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 3 0.10
28 23 0.77
29 4 0.13
ACGTcount: A:0.00, C:0.08, G:0.07, T:0.85
Consensus pattern (28 bp):
TTTTTCCTTTTTTTTTTCTTTTGCTTTT
Found at i:60041 original size:12 final size:12
Alignment explanation
Indices: 60009--60053 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
59999 TTCTTCTCTC
*
60009 TTTTTCTTTGTT
1 TTTTTTTTTGTT
60021 TTGTTTTTTTGTT
1 TT-TTTTTTTGTT
**
60034 TTTTTTTTCCTT
1 TTTTTTTTTGTT
60046 TTTTTTTT
1 TTTTTTTT
60054 CTTTTGCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 18 0.62
13 11 0.38
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:60054 original size:12 final size:11
Alignment explanation
Indices: 60024--60058 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
60014 CTTTGTTTTG
*
60024 TTTTTTTGTTT
1 TTTTTTTCTTT
60035 TTTTTTTCCTTT
1 TTTTTTT-CTTT
60047 TTTTTTTCTTT
1 TTTTTTTCTTT
60058 T
1 T
60059 GCTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:60069 original size:17 final size:17
Alignment explanation
Indices: 59995--60069 Score: 62
Period size: 17 Copynumber: 4.3 Consensus size: 17
59985 CTTAAGTAGG
*
59995 TTTTTTCTTCT-CTCTTT
1 TTTTTTCTTTTGCT-TTT
* * *
60012 TTCTTTGTTTTGTTTTTT
1 TTTTTTCTTTTG-CTTTT
* *
60030 TGTTTTTTTTTTCCTTTT
1 T-TTTTTCTTTTGCTTTT
60048 TTTTTTCTTTTGCTTTT
1 TTTTTTCTTTTGCTTTT
60065 TTTTT
1 TTTTT
60070 GAAGAGAAGG
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
17 27 0.60
18 9 0.20
19 9 0.20
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.83
Consensus pattern (17 bp):
TTTTTTCTTTTGCTTTT
Found at i:76065 original size:79 final size:79
Alignment explanation
Indices: 75934--76311 Score: 325
Period size: 79 Copynumber: 4.8 Consensus size: 79
75924 ACCACGGGGC
* * * * *
75934 TGGAGTATCCCCGATTATAGAAAATCGGTGTTTTGAAAGTAAAATTGGGGTTAGAGTATCCCCTC
1 TGGAGTATCCCTGATTATAAAAAATCAGTATTTTGAAAATAAAATTGGGGTTAGAGTATCCCCTC
*
75999 AAAAATAACAGGGT
66 GAAAATAACAGGGT
* *
76013 TGGAGTATCCTTGATTATAAAAAATCATTATTTT-AAATATAAAATTGGGGTTAGAGTATCCCCT
1 TGGAGTATCCCTGATTATAAAAAATCAGTATTTTGAAA-ATAAAATTGGGGTTAGAGTATCCCCT
*
76077 CGGAAATAACAGGGT
65 CGAAAATAACAGGGT
* * ** * * * * *
76092 TTGAGTATCCCTGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGATCAGAGTATCCTCTC
1 TGGAGTATCCCTGATTATAAAAAATCAGTATTTTGAAAATAAAATTGGGGTTAGAGTATCCCCTC
76157 GAAAATAACAGGGT
66 GAAAATAACAGGGT
** * * ***** *
76171 TGGAGTATCCCCAATTGTGAAAAATC-G-ATGCTTT-AGAAATAAGGCCAGGGTTGGAGTATCCC
1 TGGAGTATCCCTGATTATAAAAAATCAGTAT--TTTGA-AAATAAAATTGGGGTTAGAGTATCCC
76233 CAT-GAAAATAACAGGGT
63 C-TCGAAAATAACAGGGT
* * * * ** * * * * *
76250 TGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTGAGAATAAAATCGGAGTTGGAGTATCCC
1 TGGAGTATCCCTGATTATAAAAAATCAGTATTTTGAAAATAAAATTGGGGTTAGAGTATCCC
76312 TCATTGTGAA
Statistics
Matches: 243, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
77 1 0.00
78 5 0.02
79 230 0.95
80 6 0.02
81 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (79 bp):
TGGAGTATCCCTGATTATAAAAAATCAGTATTTTGAAAATAAAATTGGGGTTAGAGTATCCCCTC
GAAAATAACAGGGT
Found at i:76136 original size:158 final size:158
Alignment explanation
Indices: 75934--76311 Score: 449
Period size: 158 Copynumber: 2.4 Consensus size: 158
75924 ACCACGGGGC
* * *
75934 TGGAGTATCCCCGATTATAGAAAATCGGTGTTTTGAAAGTAAAATTGGGGTTAGAGTATCCCCTC
1 TGGAGTATCCCCGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTC
*** * ***
75999 AAAAATAACAGGGTTGGAGTATCCTTGATTATAAAAAATC-ATTATTTTA-AATATAAAATTGGG
66 AAAAATAACAGGGTTGGAGTATCCCCAATTATAAAAAATCGA-TACTTTAGAA-ATAAAACCAGG
*
76062 GTTAGAGTATCCCC-TCGGAAATAACAGGGT
129 GTTAGAGTATCCCCAT-GAAAATAACAGGGT
* * * * *
76092 TTGAGTATCCCTGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGATCAGAGTATCCTCTC
1 TGGAGTATCCCCGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTC
* * * * **
76157 GAAAATAACAGGGTTGGAGTATCCCCAATTGTGAAAAATCGATGCTTTAGAAATAAGGCCAGGGT
66 AAAAATAACAGGGTTGGAGTATCCCCAATTATAAAAAATCGATACTTTAGAAATAAAACCAGGGT
*
76222 TGGAGTATCCCCATGAAAATAACAGGGT
131 TAGAGTATCCCCATGAAAATAACAGGGT
* * * *
76250 TGGAGTATCCCCGATTGT-GAGAAATTGGTGTTTTGAGAATAAAATCGGAGTTGGAGTATCCC
1 TGGAGTATCCCCGATTATAGA-AAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCC
76312 TCATTGTGAA
Statistics
Matches: 184, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 178 0.97
159 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (158 bp):
TGGAGTATCCCCGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTC
AAAAATAACAGGGTTGGAGTATCCCCAATTATAAAAAATCGATACTTTAGAAATAAAACCAGGGT
TAGAGTATCCCCATGAAAATAACAGGGT
Found at i:82250 original size:92 final size:90
Alignment explanation
Indices: 82093--82272 Score: 324
Period size: 92 Copynumber: 2.0 Consensus size: 90
82083 GCTTAGACGA
*
82093 AATTAGGTGTCAATAACTACATCTCTTTGTCTATTGTTGAGAATTAGGAACAAGACAAAGACCAA
1 AATTAGGTGTCAATAACTACATCTCTTTGTCTATTGTTCAGAATTAGGAACAAGACAAAGACCAA
82158 ATAGACATAATTTCATTTGGGCCATGG
66 ATAGAC--AATTTCATTTGGGCCATGG
*
82185 AATTAGGTGTTAATAACTACATCTCTTTGTCTATTGTTCAGAATTAGGAACAAGACAAAGACCAA
1 AATTAGGTGTCAATAACTACATCTCTTTGTCTATTGTTCAGAATTAGGAACAAGACAAAGACCAA
82250 ATAGACAATTTCATTTGGGCCAT
66 ATAGACAATTTCATTTGGGCCAT
82273 AAAGTCTTGA
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
90 17 0.20
92 69 0.80
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (90 bp):
AATTAGGTGTCAATAACTACATCTCTTTGTCTATTGTTCAGAATTAGGAACAAGACAAAGACCAA
ATAGACAATTTCATTTGGGCCATGG
Found at i:82483 original size:40 final size:40
Alignment explanation
Indices: 82439--82601 Score: 143
Period size: 40 Copynumber: 4.1 Consensus size: 40
82429 AACCAAGACA
* *
82439 AAATCGACAAGTCAACAAGTTTAAAAGGTTGACTAGGATG
1 AAATCGACAAGTCAACAAGTTTAAAAGGTTGACAAAGATG
* * * * *
82479 AAATCGACAAGTTAGC-AGATGAGAAGGCTTGACAAAGATG
1 AAATCGACAAGTCAACAAGTTTAAAAGG-TTGACAAAGATG
* ** * *
82519 AAATCGAGAAGTCAACAAGTTTAAGGGGTTAACCAAGAT-
1 AAATCGACAAGTCAACAAGTTTAAAAGGTTGACAAAGATG
* * *
82558 AAAACTGACAAATCAACAAGTTTAAGAGGTTGATC-AAGATG
1 AAATC-GACAAGTCAACAAGTTTAAAAGGTTGA-CAAAGATG
82599 AAA
1 AAA
82602 CTAACAAGTT
Statistics
Matches: 96, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
39 12 0.12
40 74 0.77
41 10 0.10
ACGTcount: A:0.45, C:0.12, G:0.23, T:0.20
Consensus pattern (40 bp):
AAATCGACAAGTCAACAAGTTTAAAAGGTTGACAAAGATG
Found at i:82603 original size:40 final size:40
Alignment explanation
Indices: 82530--82681 Score: 145
Period size: 40 Copynumber: 3.8 Consensus size: 40
82520 AATCGAGAAG
* * *
82530 TCAACAAGTTTAAGGGGTTAACCAAGATAAAACTGACAAA
1 TCAACAAGTTTAAGGGGTTAATCAAGATGAAACTAACAAA
* *
82570 TCAACAAGTTTAAGAGGTTGATCAAGATGAAACTAACAAGTTGA
1 TCAACAAGTTTAAGGGGTTAATCAAGATGAAACTAACAA----A
*
82614 T-AGACAAG---AA-GGGTTAATCAAGATGAAACTAACAAG
1 TCA-ACAAGTTTAAGGGGTTAATCAAGATGAAACTAACAAA
*
82650 TCAGCAAGTTTAAGGGGTTGAA-CAAGATGAAA
1 TCAACAAGTTTAAGGGGTT-AATCAAGATGAAA
82682 AGAGTTGACC
Statistics
Matches: 92, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
36 5 0.05
37 1 0.01
39 2 0.02
40 72 0.78
41 4 0.04
43 1 0.01
44 7 0.08
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.21
Consensus pattern (40 bp):
TCAACAAGTTTAAGGGGTTAATCAAGATGAAACTAACAAA
Found at i:82624 original size:120 final size:120
Alignment explanation
Indices: 82424--82682 Score: 280
Period size: 120 Copynumber: 2.1 Consensus size: 120
82414 TAGGTCAAAA
* * * *
82424 GGGTTAACCAAGACAAAATCGACAAGTCAACAAGTTTAAAAGGTTGACTAGGATGAAATCGACAA
1 GGGTTAACCAAGATAAAATCGACAAATCAACAAGTTTAAAAGGTTGACTAAGATGAAATCAACAA
** * * *
82489 GTTAGCAGATGAGAAGGCTTGA-CAAAGATGAAA-TCGAGAAGTCAACAAGTTTAAG
66 GTTAGCAGACAAGAAGGCTTAATC-AAGATGAAACT-AACAAGTCAACAAGTTTAAG
*
82544 GGGTTAACCAAGATAAAA-CTGACAAATCAACAAGTTTAAGAGGTTGA-TCAAGATGAAA-CTAA
1 GGGTTAACCAAGATAAAATC-GACAAATCAACAAGTTTAAAAGGTTGACT-AAGATGAAATC-AA
* * *
82606 CAAGTT-GATAGACAAGAAGGGTTAATCAAGATGAAACTAACAAGTCAGCAAGTTTAAG
63 CAAGTTAG-CAGACAAGAAGGCTTAATCAAGATGAAACTAACAAGTCAACAAGTTTAAG
82664 GGGTTGAA-CAAGATGAAAA
1 GGGTT-AACCAAGAT-AAAA
82683 GAGTTGACCA
Statistics
Matches: 118, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
119 4 0.03
120 106 0.90
121 8 0.07
ACGTcount: A:0.45, C:0.12, G:0.23, T:0.20
Consensus pattern (120 bp):
GGGTTAACCAAGATAAAATCGACAAATCAACAAGTTTAAAAGGTTGACTAAGATGAAATCAACAA
GTTAGCAGACAAGAAGGCTTAATCAAGATGAAACTAACAAGTCAACAAGTTTAAG
Found at i:82766 original size:39 final size:40
Alignment explanation
Indices: 82708--82842 Score: 114
Period size: 41 Copynumber: 3.4 Consensus size: 40
82698 AAATCGATAC
* * *
82708 GTCAACAAATGAAAAGGGTTGCTAGAGATAAACTA-ACAA
1 GTCAACAAGTTAAAAGGGTTGCTAGAGATAAACCATACAA
* **
82747 GTCAACAAGTTAAACGGGTTAGCTAG-GATGAAACCATATGA
1 GTCAACAAGTTAAAAGGGTT-GCTAGAGAT-AAACCATACAA
* * **
82788 GTCAACAAGTTTAAGGGGTTGACT-GAGATAAAACCATATGA
1 GTCAACAAGTTAAAAGGGTTG-CTAGAGAT-AAACCATACAA
*
82829 GTCAACGAGTTAAA
1 GTCAACAAGTTAAA
82843 GGTGATGACC
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
39 20 0.25
40 12 0.15
41 48 0.60
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.21
Consensus pattern (40 bp):
GTCAACAAGTTAAAAGGGTTGCTAGAGATAAACCATACAA
Found at i:82793 original size:41 final size:41
Alignment explanation
Indices: 82746--82842 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 41
82736 TAAACTAACA
*
82746 AGTCAACAAGTTAAACGGGTT-AGCT-AGGATGAAACCATATG
1 AGTCAACAAGTTAAACGGGTTGA-CTGA-GATAAAACCATATG
* *
82787 AGTCAACAAGTTTAAGGGGTTGACTGAGATAAAACCATATG
1 AGTCAACAAGTTAAACGGGTTGACTGAGATAAAACCATATG
*
82828 AGTCAACGAGTTAAA
1 AGTCAACAAGTTAAA
82843 GGTGATGACC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 47 0.96
42 2 0.04
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (41 bp):
AGTCAACAAGTTAAACGGGTTGACTGAGATAAAACCATATG
Found at i:83015 original size:40 final size:40
Alignment explanation
Indices: 82850--83027 Score: 141
Period size: 40 Copynumber: 4.4 Consensus size: 40
82840 AAAGGTGATG
* * *
82850 ACCAAAACAAAATCATACAAGTCAACA-AGTTAAAATAGTTA
1 ACCAAGACAAAACCATACAAGTCAA-AGAGTTAGAA-AGTTA
* *
82891 ACCAAGACAAAACCA-ACCAA-TCAATGAGTTAGAGGAGTTA
1 ACCAAGACAAAACCATA-CAAGTCAAAGAGTTAGA-AAGTTA
* * * *
82931 ATCAAGACAAAACCA-ACAAGTCTATGAGTTTAAGAAA-TTG
1 ACCAAGACAAAACCATACAAGTCAAAGAG-TT-AGAAAGTTA
* * *
82971 ACCAAAATAAAACCATATAAGTCAAAGAGTTAGAAAGTTA
1 ACCAAGACAAAACCATACAAGTCAAAGAGTTAGAAAGTTA
**
83011 ACCAAGATGAAACCATA
1 ACCAAGACAAAACCATA
83028 TGAGTCACCG
Statistics
Matches: 111, Mismatches: 18, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
39 8 0.07
40 71 0.64
41 29 0.26
42 3 0.03
ACGTcount: A:0.52, C:0.17, G:0.13, T:0.19
Consensus pattern (40 bp):
ACCAAGACAAAACCATACAAGTCAAAGAGTTAGAAAGTTA
Found at i:83028 original size:40 final size:40
Alignment explanation
Indices: 82813--83114 Score: 146
Period size: 41 Copynumber: 7.5 Consensus size: 40
82803 GGGTTGACTG
** * * *
82813 AGATAAAACCATATGAGTCAACGAGTTA-AAGGTGATGACCA
1 AGATAAAACCATACAAGTCAATGAGTTAGAAAGT--TAACCA
* * * ** *
82854 AAACAAAATCATACAAGTCAACAAGTTAAAATAGTTAACCA
1 AGATAAAACCATACAAGTCAATGAGTTAGAA-AGTTAACCA
* * *
82895 AGACAAAACCA-ACCAA-TCAATGAGTTAGAGGAGTTAATCA
1 AGATAAAACCATA-CAAGTCAATGAGTTAGA-AAGTTAACCA
* * *
82935 AGACAAAACCA-ACAAGTCTATGAGTTTAAGAAA-TTGACCA
1 AGATAAAACCATACAAGTCAATGAG-TT-AGAAAGTTAACCA
* * *
82975 AAATAAAACCATATAAGTCAAAGAGTTAGAAAGTTAACCA
1 AGATAAAACCATACAAGTCAATGAGTTAGAAAGTTAACCA
* ** ** ** * ***
83015 AGATGAAACCATATGAGTCACCGAGTTAGAGGGTTTGATTG
1 AGATAAAACCATACAAGTCAATGAGTTAGAAAG-TTAACCA
* * ** * *
83056 GGATGAAACCATATGAGTCAATGAGTTAGAAGAATTGACCA
1 AGATAAAACCATACAAGTCAATGAGTTAGAA-AGTTAACCA
*
83097 AGATGAAACCATACAAGT
1 AGATAAAACCATACAAGT
83115 TAACGAAGTT
Statistics
Matches: 202, Mismatches: 48, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
39 8 0.04
40 86 0.43
41 101 0.50
42 5 0.02
43 2 0.01
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (40 bp):
AGATAAAACCATACAAGTCAATGAGTTAGAAAGTTAACCA
Found at i:84902 original size:10 final size:10
Alignment explanation
Indices: 84887--84949 Score: 65
Period size: 10 Copynumber: 6.1 Consensus size: 10
84877 CTCATTTTTT
84887 TCACTGTTCA
1 TCACTGTTCA
84897 TCACTGTTCA
1 TCACTGTTCA
* *
84907 TGTA-TCGATACA
1 T-CACT-G-TTCA
*
84919 TTACTGTTCA
1 TCACTGTTCA
84929 TCACTGTTCA
1 TCACTGTTCA
84939 TCACTGTTCA
1 TCACTGTTCA
84949 T
1 T
84950 GTATCGATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
10 35 0.78
11 5 0.11
12 5 0.11
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.41
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:86786 original size:19 final size:19
Alignment explanation
Indices: 86760--86798 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
86750 ATTCAATGAG
*
86760 ATGCTG-AACATATTAAAA
1 ATGCTGAAACATAATAAAA
86778 ATGCATGAAACATAATAAAA
1 ATGC-TGAAACATAATAAAA
86798 A
1 A
86799 AAATGCATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 2 0.11
20 12 0.67
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.23
Consensus pattern (19 bp):
ATGCTGAAACATAATAAAA
Found at i:88558 original size:48 final size:48
Alignment explanation
Indices: 88441--88572 Score: 183
Period size: 48 Copynumber: 2.8 Consensus size: 48
88431 AGAGGAGTGC
** * * * *
88441 CAATGTGCCAATTCAAGGCCAACAACATCGAGCTATGGGAAAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* *
88489 CAATATGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
*
88537 CAATGTGCTGATTCAAGGCCAGTGACATTGAGCTAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA
88573 TAATGGTGCC
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.20
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
Found at i:88699 original size:28 final size:28
Alignment explanation
Indices: 88637--90274 Score: 868
Period size: 28 Copynumber: 55.6 Consensus size: 28
88627 AAAATGGTGA
88637 TTTGAAAAGGGTTGCCA-TCGACTTGCGTGGGC
1 TTTG-AAAGGG-TGCCACT-GACTT--GTGGGC
* * *
88669 TTTGAAAGGGTGTCATTGACTTGTGGAC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
**
88697 TTTGAAAGAATGCCACTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
88725 TTTGAAAGGGTGCCACTGATTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * *
88753 TTTGAAAAGATGCCACAGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* ** *
88781 TTTGAAAAGGATGCCACCAACTTGTGGAC
1 TTTG-AAAGGGTGCCACTGACTTGTGGGC
88810 TTTGAAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* *
88838 TTTGAAAGGGTGCCACTGATTTGTGAGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * * *
88866 TTTGAAATAGGTTACCACCGACTTGTGTAGGT
1 TTTG-AA-AGGGTGCCACTGACTTGTG--GGC
* *
88898 TTTGAAATGGGTTACCACAGACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* *
88930 TTTGAAATGGGTTACCACCGACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
88962 TTTGAAATGGGTTGCCACTGACTTGTGTGGAC
1 TTTGAAA-GGG-TGCCACTGACTTGTG-GG-C
** * **
88994 TTTGAACTGATGCCACCAACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
**
89022 TTTGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* *
89054 TTTGAAATGGGTTGCCAATAACTTGTGTAGGC
1 TTTGAAA-GGG-TGCCACTGACTTGTG--GGC
* * *
89086 TTTTAAATGAGCTGCCACCGACTTGTGTGGGC
1 TTTGAAA-G-GGTGCCACTGAC-T-TGTGGGC
*** *
89118 TTTGAAATAATGCCACTAACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*** *
89146 TTTGAAATAATGCCATTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
** * *
89174 TTAAAAAGGGGTGCCATTGACTTGTGGAC
1 TTTGAAA-GGGTGCCACTGACTTGTGGGC
* **
89203 TTTGGAAGGGTGCCACCAACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
89231 TTTGAAAGGGTATTCCACTGACTTGTGGGC
1 TTTGAAAGGG--TGCCACTGACTTGTGGGC
* **
89261 TTTGGAAGGGTGCCACCAACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
89289 TTTGAAAGGGTATTCCACTGACTTGTGGGC
1 TTTGAAAGGG--TGCCACTGACTTGTGGGC
*
89319 TTTGGAAGGGTGCCA-TCGACTTGTGGGC
1 TTTGAAAGGGTGCCACT-GACTTGTGGGC
* *
89347 TCTGAAAGGGTATGCCACTGACTTGTGTGC
1 TTTGAAAGGG--TGCCACTGACTTGTGGGC
* *
89377 TTTGAAAGGATGCCACTAACTTG-GGGTC
1 TTTGAAAGGGTGCCACTGACTTGTGGG-C
*
89405 TTTTG-AAGAGATGCCACTGACTTGTGGGC
1 -TTTGAAAG-GGTGCCACTGACTTGTGGGC
* *
89434 TTTGAAAAGAGTTGCCAC-AACTTGTGTGGGC
1 TTTG-AAAG-GGTGCCACTGAC-T-TGTGGGC
**
89465 TTTGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* *
89497 TTTGAAATGGGTTGCCACCGACTTGTATGAG-
1 TTTGAAA-GGG-TGCCACTGACTTG--TGGGC
*
89528 TGTTGAAATGGGTTACCACTGACTTGTGTGGGC
1 T-TTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
** *
89561 TTTGAATTGATGCCACTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* **
89589 TATGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* *
89621 TTTGAAATGGGTTGCCACCGACTTGTATGAG-
1 TTTGAAA-GGG-TGCCACTGACTTG--TGGGC
* *
89652 TGTTGAAATGGGTTACCACCGACTTGTGTGGGC
1 T-TTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
** *
89685 TTTGAACTGATGCCACTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* *
89713 TTTAAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
*
89745 TTTGAAATGGGTTACCACTGACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
*
89777 TTTCAAATGGGTTGCCACTGACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
*
89809 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* * *
89841 TTTCAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAA-G-GGTGCCACTGAC-T-TGTGGGC
*** * *
89873 TTTGAAATAATGCCACTAAGTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
** * *
89901 TTAAAAAGGGGTGCCACTGACTTATGGAC
1 TTTGAAA-GGGTGCCACTGACTTGTGGGC
*
89930 TTTGGAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
** * * *
89958 TTAAAAAGGATGCCAC-GAAGTTGTGGAC
1 TTTGAAAGGGTGCCACTG-ACTTGTGGGC
** * * ** * *
89986 -TAAAAAAGATGCCAGGGAGTTGTGGAC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * * *
90013 -TTAAAAGAGTGCCAC-GAAGTTGTGGAC
1 TTTGAAAGGGTGCCACTG-ACTTGTGGGC
* * *
90040 -TTAAAAGGGTGCCA-TGGAGTTGTGGAC
1 TTTGAAAGGGTGCCACT-GACTTGTGGGC
* ** * * *
90067 TTTAAAAGAATGCCACAGAGTTGTGGAC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * * *
90095 -TTGAAACGGATGCCACGGAGTTGTGGAC
1 TTTGAAA-GGGTGCCACTGACTTGTGGGC
* * * *
90123 -TTGAAACGGATGCCACGGAGTTGTGGAC
1 TTTGAAA-GGGTGCCACTGACTTGTGGGC
* * *
90151 -TTAAAAGGGTGCCAC-GAAGTTGTGGAC
1 TTTGAAAGGGTGCCACTG-ACTTGTGGGC
* * * *
90178 -TTGAAAGGATGCCACGGAGTTGTGGAC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * *
90205 TTT-AAAGGGTGCCACGGAGTTGTGGAC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * * * * *
90232 -TTAAAAGGATGCCACGGAGTTATGGAC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
90259 TTTAAAAGGGTGCCAC
1 TTTGAAAGGGTGCCAC
90275 GGAGTTGTAG
Statistics
Matches: 1345, Mismatches: 185, Indels: 156
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.00
27 161 0.12
28 438 0.33
29 95 0.07
30 199 0.15
31 44 0.03
32 384 0.29
33 8 0.01
34 12 0.01
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (28 bp):
TTTGAAAGGGTGCCACTGACTTGTGGGC
Found at i:88718 original size:58 final size:56
Alignment explanation
Indices: 88663--90323 Score: 831
Period size: 64 Copynumber: 28.3 Consensus size: 56
88653 ATCGACTTGC
* ** * *
88663 GTGGGCTTTGAAAGGGTGTCATTGACTTGTGGACTTTGAAAGAATGCCACTGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTT
* * * *
88719 GTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTGAAAAGATGCCACAGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTT
* * * *
88775 GTGGGCTTTGAAAAGGATGCCACCAACTTGTGGACTTTGAAAGGGTGCCACTGACTT
1 GTGGGCTTTG-AAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTT
* * * * * *
88832 GTGGGCTTTGAAAGGGTGCCACTGATTTGTGAGCTTTGAAATAGGTTACCACCGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTG-AA-AGGATGCCACTGACTT
* * * * * *
88890 GTGTAGGTTTTGAAATGGGTTACCACAGACTTGTGTGGGCTTTGAAATGGGTTACCACCGACTTG
1 GTG--GGCTTTGAAA-GGG-TGCCACCGAC-T-TGTGGGCTTTGAAA--GGATGCCACTGAC-T-
88955 T
56 T
* ** **
88956 GTGGGCTTTGAAATGGGTTGCCACTGACTTGTGTGGACTTTGAACTGATGCCACCAACTT
1 GTGGGCTTTGAAA-GGG-TGCCACCGACTTGTG-GG-CTTTGAAAGGATGCCACTGACTT
* * * *
89016 GTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATGGGTTGCCAATAACTT
1 GTGGGCTTTGAAA-GGG-TGCCACCGAC-T-TGTGGGCTTTGAAA--GGATGCCACTGACTT
* * ** *
89078 GTGTAGGCTTTTAAATGAGCTGCCACCGACTTGTGTGGGCTTTGAAATAATGCCACTAACTT
1 GTG--GGCTTTGAAA-G-GGTGCCACCGAC-T-TGTGGGCTTTGAAAGGATGCCACTGACTT
*** ** ** * *
89140 GTGGGCTTTGAAATAATGCCATTGACTTGTGGGCTTAAAAAGGGGTGCCATTGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAA-GGATGCCACTGACTT
* * * *
89197 GTGGACTTTGGAAGGGTGCCACCAACTTGTGGGCTTTGAAAGGGTATTCCACTGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAA-GG-ATGCCACTGACTT
* * *
89255 GTGGGCTTTGGAAGGGTGCCACCAACTTGTGGGCTTTGAAAGGGTATTCCACTGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAA-GG-ATGCCACTGACTT
* * *
89313 GTGGGCTTTGGAAGGGTGCCATCGACTTGTGGGCTCTGAAAGGGTATGCCACTGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAA-GG-ATGCCACTGACTT
* * **
89371 GTGTGCTTTGAAAGGATGCCACTAACTTG-GGGTCTTTTG-AAGAGATGCCACTGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGG-C-TTTGAAAG-GATGCCACTGACTT
* * * **
89428 GTGGGCTTTGAAAAGAGTTGCCA-CAACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGT
1 GTGGGCTTTG-AAAG-GGTGCCACCGAC-T-TGTGGGCTTTGAAA--GGATGCCACTGAC-T-T
* * *
89491 GTGGGCTTTGAAATGGGTTGCCACCGACTTGTATGAG-TGTTGAAATGGGTTACCACTGACTTGT
1 GTGGGCTTTGAAA-GGG-TGCCACCGACTTG--TGGGCT-TTGAAA--GGATGCCACTGAC-T-T
** * * * * **
89555 GTGGGCTTTGAATTGATGCCACTGACTTGTGGGCTATGAAATGGGTTGCCACCAACTTGT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAA--GGATGCCACTGAC-T-T
* * * *
89615 GTGGGCTTTGAAATGGGTTGCCACCGACTTGTATGAG-TGTTGAAATGGGTTACCACCGACTTGT
1 GTGGGCTTTGAAA-GGG-TGCCACCGACTTG--TGGGCT-TTGAAA--GGATGCCACTGAC-T-T
** * * * * *
89679 GTGGGCTTTGAACTGATGCCACTGACTTGTGGGCTTTAAAATGGGTTGCCACCGACTTGT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAA--GGATGCCACTGAC-T-T
* * * *
89739 GTGGGCTTTGAAATGGGTTACCACTGACTTGTGTGGGCTTTCAAATGGGTTGCCACTGACTTGT
1 GTGGGCTTTGAAA-GGG-TGCCACCGAC-T-TGTGGGCTTTGAAA--GGATGCCACTGAC-T-T
* * *
89803 GTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGT
1 GTGGGCTTTGAAA-GGG-TGCCACCGAC-T-TGTGGGCTTTGAAA-G-GATGCCACTGAC-T-T
*** ** * ** *
89867 GTGGGCTTTGAAATAATGCCACTAAGTTGTGGGCTTAAAAAGGGGTGCCACTGACTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAA-GGATGCCACTGACTT
* * * * ** *
89924 ATGGACTTTGGAAGGGTGCCACTGACTTGTGGGCTTAAAAAGGATGCCAC-GAAGTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTG-ACTT
* ** * * ** * * * *
89980 GTGGAC-TAAAAAAGATGCCAGGGAGTTGTGGAC-TT-AAAAGAGTGCCAC-GAAGTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGA-TGCCACTG-ACTT
* * ** * * * * * *
90034 GTGGAC-TTAAAAGGGTGCCATGGAGTTGTGGACTTTAAAAGAATGCCACAGAGTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTT
* * * * * * *
90089 GTGGAC-TTGAAACGGATGCCACGGAGTTGTGGAC-TTGAAACGGATGCCACGGAGTT
1 GTGGGCTTTGAAA-GGGTGCCACCGACTTGTGGGCTTTGAAA-GGATGCCACTGACTT
* * * * * *
90145 GTGGAC-TTAAAAGGGTGCCA-CGAAGTTGTGGAC-TTGAAAGGATGCCACGGAGTT
1 GTGGGCTTTGAAAGGGTGCCACCG-ACTTGTGGGCTTTGAAAGGATGCCACTGACTT
* * * * * * *
90199 GTGGACTTT-AAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTT
* * * * * * * * * *
90253 ATGGACTTTAAAAGGGTGCCACGGAGTTGTAGACTTTAAAAGGATACCA-TAGAGTT
1 GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACT-GACTT
* *
90309 GTGGACTTTAAAAGG
1 GTGGGCTTTGAAAGG
90324 ATACCACGGA
Statistics
Matches: 1347, Mismatches: 190, Indels: 136
0.81 0.11 0.08
Matches are distributed among these distances:
53 5 0.00
54 113 0.08
55 96 0.07
56 189 0.14
57 155 0.12
58 180 0.13
59 24 0.02
60 144 0.11
61 24 0.02
62 113 0.08
63 30 0.02
64 268 0.20
65 2 0.00
66 4 0.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (56 bp):
GTGGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGATGCCACTGACTT
Found at i:88902 original size:32 final size:32
Alignment explanation
Indices: 88637--89880 Score: 960
Period size: 32 Copynumber: 41.2 Consensus size: 32
88627 AAAATGGTGA
* * *
88637 TTTGAAAAGGGTTGCCATCGACTTGCGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* ** *
88669 TTTGAAA-GGG-TGTCATTGAC-T-TGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
** *
88697 TTTGAAA--GAATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
88725 TTTGAAA-GGG-TGCCACTGA-TT-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
88753 TTTGAAA--AGATGCCACAGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * *
88781 TTTGAAA-AGGATGCCACCAAC-T-TGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
88810 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
88838 TTTGAAA-GGG-TGCCACTGA-TT-TGTGAGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * *
88866 TTTGAAATAGGTTACCACCGACTTGTGTAGGT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
88898 TTTGAAATGGGTTACCACAGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
88930 TTTGAAATGGGTTACCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
88962 TTTGAAATGGGTTGCCACTGACTTGTGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
88994 TTTGAACT--GATGCCACCAAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
89022 TTTGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*** *
89054 TTTGAAATGGGTTGCCAATAACTTGTGTAGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
89086 TTTTAAATGAGCTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
** **
89118 TTTGAAAT--AATGCCACTAAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
** **
89146 TTTGAAAT--AATGCCATTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * ** *
89174 -TTAAAAAGGGGTGCCATTGAC-T-TGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89203 TTTGGAA-GGG-TGCCACCAAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89231 TTTGAAA-GGGTATTCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGT-TGCCACCGACTTGTGTGGGC
* *
89261 TTTGGAA-GGG-TGCCACCAAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89289 TTTGAAA-GGGTATTCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGT-TGCCACCGACTTGTGTGGGC
* *
89319 TTTGGAA-GGG-TGCCATCGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89347 TCTGAAA-GGGTATGCCACTGACTTGTGT--GC
1 TTTGAAATGGGT-TGCCACCGACTTGTGTGGGC
* ** *
89377 TTTGAAA--GGATGCCACTAACTTG-G-GGTC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
89405 TTTTG-AA-GAGATGCCACTGAC-T-TGTGGGC
1 -TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
89434 TTTGAAAAGAGTTGCCA-CAACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
89465 TTTGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89497 TTTGAAATGGGTTGCCACCGACTTGTATGAG-
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89528 TGTTGAAATGGGTTACCACTGACTTGTGTGGGC
1 T-TTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
89561 TTTG-AAT-TGATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89589 TATGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89621 TTTGAAATGGGTTGCCACCGACTTGTATGAG-
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
89652 TGTTGAAATGGGTTACCACCGACTTGTGTGGGC
1 T-TTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
89685 TTTGAACT--GATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
89713 TTTAAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89745 TTTGAAATGGGTTACCACTGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89777 TTTCAAATGGGTTGCCACTGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
89809 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
89841 TTTCAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
89873 TTTGAAAT
1 TTTGAAAT
89881 AATGCCACTA
Statistics
Matches: 1022, Mismatches: 141, Indels: 98
0.81 0.11 0.08
Matches are distributed among these distances:
27 8 0.01
28 289 0.28
29 81 0.08
30 158 0.15
31 36 0.04
32 448 0.44
33 2 0.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:89033 original size:124 final size:122
Alignment explanation
Indices: 88707--89983 Score: 898
Period size: 124 Copynumber: 10.6 Consensus size: 122
88697 TTTGAAAGAA
* *
88707 TGCCACTGAC-T-TGTGGGCTTTGAAA-GGGTGCCACTGATTTGTG-GGCTTTGAAAAGATGCCA
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACTGACTTGTGTGGCTTTGAAATGATGCCA
* * *
88768 -CAGACTTGTGGGCTTTGAAA-AGGATGCCACCA-AC-T-TGTGGACTTTGAAA-GGG-
66 CCA-ACTTGTGGGCTTTGAAATGGGTTGCCA-CAGACTTGTGTGGGCTTTGAAATGGGT
* *
88820 TGCCACTGAC-T-TGTGGGCTTTGAAA-GGGTGCCACTGA-TT-TGTGAGCTTTGAAATAGGTTA
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACTGACTTGTGTG-GCTTTGAAAT--GATG
* * *
88880 CCACCGACTTGTGTAGGTTTTGAAATGGGTTACCACAGACTTGTGTGGGCTTTGAAATGGGT
63 CCACCAACTTGTG--GGCTTTGAAATGGGTTGCCACAGACTTGTGTGGGCTTTGAAATGGGT
* * *
88942 TACCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACTGACTTGTGTGGACTTTGAACTGATGC
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGG-TGCCACTGACTTGTGTGG-CTTTGAAATGATGC
89007 CACCAACTTGTGGGCTTTGAAATGGGTTGCCACCA-ACTTGTGTGGGCTTTGAAATGGGT
64 CACCAACTTGTGGGCTTTGAAATGGGTTGCCA-CAGACTTGTGTGGGCTTTGAAATGGGT
* * * * * * *
89066 TGCCAATAACTTGTGTAGGCTTTTAAATGAGCTGCCACCGACTTGTGTGGGCTTTGAAATAATGC
1 TGCCACTGACTTGTGTGGGCTTTGAAATG-GGTGCCACTGACTTGTGT-GGCTTTGAAATGATGC
* ** ** * * *
89131 CACTAACTTGTGGGCTTTGAAAT--AATGCCATTGAC-T-TGTGGGC-TTAAAAAGGGG
64 CACCAACTTGTGGGCTTTGAAATGGGTTGCCACAGACTTGTGTGGGCTTTGAAATGGGT
* * * ** * *
89185 TGCCATTGAC-T-TGTGGACTTTGGAA-GGGTGCCACCAACTTGTG-GGCTTTGAAAGGGTATTC
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACTGACTTGTGTGGCTTTGAAA-TG-ATGC
** *
89246 CACTGACTTGTGGGCTTTGGAA-GGG-TGCCACCA-AC-T-TGTGGGCTTTGAAA-GGGT
64 CACCAACTTGTGGGCTTTGAAATGGGTTGCCA-CAGACTTGTGTGGGCTTTGAAATGGGT
* * * *
89300 ATTCCACTGAC-T-TGTGGGCTTTGGAA-GGGTGCCA-TCGACTTGTG-GGCTCTGAAAGGGTAT
1 -TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACT-GACTTGTGTGGCTTTGAAA-TG-AT
** * * * * *
89360 GCCACTGACTTGTGTGCTTTGAAA--GGATGCCACTA-ACTTG-G-GGTCTTTTG-AA-GAGA
62 GCCACCAACTTGTGGGCTTTGAAATGGGTTGCCAC-AGACTTGTGTGGGC-TTTGAAATGGGT
* * * *
89416 TGCCACTGAC-T-TGTGGGCTTTGAAAAGAGTTGCCAC-AACTTGTGTGGGCTTTGAAATGGGTT
1 TGCCACTGACTTGTGTGGGCTTTGAAATG-GGTGCCACTGACTTGTGT-GGCTTTGAAAT--GAT
* * *
89478 GCCACCAACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTATGAG-TGTTGAAATGGGT
62 GCCACCAAC-T-TGTGGGCTTTGAAATGGGTTGCCACAGACTTGTGTGGGCT-TTGAAATGGGT
* * * * *
89541 TACCACTGACTTGTGTGGGCTTTG-AATTGATGCCACTGACTTGTG-GGCTATGAAATGGGTTGC
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACTGACTTGTGTGGCTTTGAAAT--GATGC
* * *
89604 CACCAACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTATGAG-TGTTGAAATGGGT
64 CACCAAC-T-TGTGGGCTTTGAAATGGGTTGCCACAGACTTGTGTGGGCT-TTGAAATGGGT
* * * * * *
89665 TACCACCGACTTGTGTGGGCTTTGAACT-GATGCCACTGACTTGTG-GGCTTTAAAATGGGTTGC
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACTGACTTGTGTGGCTTTGAAAT--GATGC
* * * *
89728 CACCGACTTGTGTGGGCTTTGAAATGGGTTACCACTGACTTGTGTGGGCTTTCAAATGGGT
64 CACCAAC-T-TGTGGGCTTTGAAATGGGTTGCCACAGACTTGTGTGGGCTTTGAAATGGGT
* *
89789 TGCCACTGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTCAAATGAGTT
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGG-TGCCACTGACTTGTGT-GGCTTTGAAATGA--T
* ** * * * *
89854 GCCACCGACTTGTGTGGGCTTTGAAAT--AATGCCACTA-A-GT-TGTGGGC-TTAAAAAGGGG
62 GCCACCAAC-T-TGTGGGCTTTGAAATGGGTTGCCAC-AGACTTGTGTGGGCTTTGAAATGGGT
* * * ** *
89912 TGCCACTGAC-T-TATGGACTTTGGAA-GGGTGCCACTGACTTGTG-GGCTTAAAAAGGATGCCA
1 TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACTGACTTGTGTGGCTTTGAAATGATGCCA
* *
89973 CGAAGTTGTGG
66 CCAACTTGTGG
89984 ACTAAAAAAG
Statistics
Matches: 975, Mismatches: 123, Indels: 132
0.79 0.10 0.11
Matches are distributed among these distances:
111 2 0.00
112 3 0.00
113 61 0.06
114 1 0.00
115 101 0.10
116 103 0.11
117 43 0.04
118 26 0.03
119 33 0.03
120 36 0.04
121 15 0.02
122 30 0.03
123 22 0.02
124 350 0.36
125 31 0.03
126 54 0.06
127 14 0.01
128 50 0.05
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (122 bp):
TGCCACTGACTTGTGTGGGCTTTGAAATGGGTGCCACTGACTTGTGTGGCTTTGAAATGATGCCA
CCAACTTGTGGGCTTTGAAATGGGTTGCCACAGACTTGTGTGGGCTTTGAAATGGGT
Found at i:89997 original size:27 final size:27
Alignment explanation
Indices: 89935--90371 Score: 525
Period size: 27 Copynumber: 15.9 Consensus size: 27
89925 TGGACTTTGG
* * * *
89935 AAGGGTGCCACTGACTTGTGGGCTTAAA
1 AAGGATGCCACGGAGTTGTGGACTT-AA
* *
89963 AAGGATGCCACGAAGTTGTGGACTAAA
1 AAGGATGCCACGGAGTTGTGGACTTAA
* *
89990 AAAGATGCCAGGGAGTTGTGGACTTAA
1 AAGGATGCCACGGAGTTGTGGACTTAA
*
90017 AA-GAGTGCCACGAAGTTGTGGACTTAA
1 AAGGA-TGCCACGGAGTTGTGGACTTAA
* *
90044 AAGGGTGCCATGGAGTTGTGGACTTTAA
1 AAGGATGCCACGGAGTTGTGGAC-TTAA
* *
90072 AAGAATGCCACAGAGTTGTGGACTTGAA
1 AAGGATGCCACGGAGTTGTGGACTT-AA
*
90100 ACGGATGCCACGGAGTTGTGGACTTGAA
1 AAGGATGCCACGGAGTTGTGGACTT-AA
*
90128 ACGGATGCCACGGAGTTGTGGACTTAA
1 AAGGATGCCACGGAGTTGTGGACTTAA
* * *
90155 AAGGGTGCCACGAAGTTGTGGACTTGA
1 AAGGATGCCACGGAGTTGTGGACTTAA
*
90182 AAGGATGCCACGGAGTTGTGGACTTTA
1 AAGGATGCCACGGAGTTGTGGACTTAA
*
90209 AAGGGTGCCACGGAGTTGTGGACTTAA
1 AAGGATGCCACGGAGTTGTGGACTTAA
*
90236 AAGGATGCCACGGAGTTATGGACTTTAA
1 AAGGATGCCACGGAGTTGTGGAC-TTAA
* *
90264 AAGGGTGCCACGGAGTTGTAGACTTTAA
1 AAGGATGCCACGGAGTTGTGGAC-TTAA
* **
90292 AAGGATACCATAGAGTTGTGGACTTTAA
1 AAGGATGCCACGGAGTTGTGGAC-TTAA
*
90320 AAGGATACCACGGAGTTGTGGACTTAA
1 AAGGATGCCACGGAGTTGTGGACTTAA
* * *
90347 ACGGATGACATGGAGTTGTGGACTT
1 AAGGATGCCACGGAGTTGTGGACTT
90372 TGAAAAGAAA
Statistics
Matches: 357, Mismatches: 47, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 187 0.52
28 168 0.47
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (27 bp):
AAGGATGCCACGGAGTTGTGGACTTAA
Found at i:90219 original size:192 final size:192
Alignment explanation
Indices: 89935--90379 Score: 593
Period size: 192 Copynumber: 2.3 Consensus size: 192
89925 TGGACTTTGG
* * * * **
89935 AAGGGTGCCACTGACTTGTGGGCTTAAAAAGGATGCCACGAAGTTGTGGACTAAAAAAGATGCCA
1 AAGGATGCCACGGAGTTGTGGACTT-AAAAGGATGCCACGAAGTTGTGGACTTGAAAAGATGCCA
* * * *
90000 GGGAGTTGTGGACTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGG
65 CGGAGTTGTGGACTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTATGG
* * * *
90065 ACTTTAAAAGAATGCCACAGAGTTGTGGACTTGAAACGGATGCCACGGAGTTGTGGACTTGAA
130 ACTTTAAAAGAATGCCACAGAGTTGTAGACTTGAAAAGGATACCACAGAGTTGTGGACTTGAA
* * *
90128 ACGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGACTTGAAAGGATGCCAC
1 AAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTGAAAAGATGCCAC
* * *
90193 GGAGTTGTGGACTTTAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTATGGA
66 GGAGTTGTGGACTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTATGGA
** * * * *
90258 CTTTAAAAGGGTGCCACGGAGTTGTAGACTTTAAAAGGATACCATAGAGTTGTGGACTTTAA
131 CTTTAAAAGAATGCCACAGAGTTGTAGACTTGAAAAGGATACCACAGAGTTGTGGACTTGAA
* * * * *
90320 AAGGATACCACGGAGTTGTGGACTTAAACGGATGACATGGAGTTGTGGACTTTGAAAAGA
1 AAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGAC-TTGAAAAGA
90380 AATGCCACTA
Statistics
Matches: 217, Mismatches: 34, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
192 189 0.87
193 28 0.13
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (192 bp):
AAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTGAAAAGATGCCAC
GGAGTTGTGGACTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTATGGA
CTTTAAAAGAATGCCACAGAGTTGTAGACTTGAAAAGGATACCACAGAGTTGTGGACTTGAA
Found at i:90275 original size:28 final size:28
Alignment explanation
Indices: 89882--90387 Score: 526
Period size: 28 Copynumber: 18.2 Consensus size: 28
89872 CTTTGAAATA
** * *
89882 ATGCCACTAAGTTGTGGGCTTAAAAAGGG
1 ATGCCACGGAGTTGTGGACTTTAAAA-GG
* * * * **
89911 GTGCCACTGACTTATGGACTTTGGAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* * * * *
89939 GTGCCACTGACTTGTGGGCTTAAAAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* * *
89967 ATGCCACGAAGTTGTGGAC-TAAAAAAG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
*
89994 ATGCCAGGGAGTTGTGGAC-TTAAAA-G
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
*
90020 AGTGCCACGAAGTTGTGGAC-TTAAAAGG
1 A-TGCCACGGAGTTGTGGACTTTAAAAGG
* * *
90048 GTGCCATGGAGTTGTGGACTTTAAAAGA
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* * *
90076 ATGCCACAGAGTTGTGGACTTGAAACGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* *
90104 ATGCCACGGAGTTGTGGACTTGAAACGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
90132 ATGCCACGGAGTTGTGGAC-TTAAAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* * *
90159 GTGCCACGAAGTTGTGGAC-TTGAAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
90186 ATGCCACGGAGTTGTGGACTTT-AAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
*
90213 GTGCCACGGAGTTGTGGAC-TTAAAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
*
90240 ATGCCACGGAGTTATGGACTTTAAAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* *
90268 GTGCCACGGAGTTGTAGACTTTAAAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* **
90296 ATACCATAGAGTTGTGGACTTTAAAAGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* *
90324 ATACCACGGAGTTGTGGAC-TTAAACGG
1 ATGCCACGGAGTTGTGGACTTTAAAAGG
* * *
90351 ATGACATGGAGTTGTGGACTTTGAAAAGAA
1 ATGCCACGGAGTTGTGGACTTT-AAAAG-G
90381 ATGCCAC
1 ATGCCAC
90388 TAAATCATGG
Statistics
Matches: 405, Mismatches: 63, Indels: 17
0.84 0.13 0.04
Matches are distributed among these distances:
26 4 0.01
27 182 0.45
28 192 0.47
29 22 0.05
30 5 0.01
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.24
Consensus pattern (28 bp):
ATGCCACGGAGTTGTGGACTTTAAAAGG
Found at i:101776 original size:510 final size:508
Alignment explanation
Indices: 91492--102016 Score: 18938
Period size: 508 Copynumber: 20.7 Consensus size: 508
91482 ACATGGCAAT
* *
91492 TGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTAAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
**
91557 TTCGACGTATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
91622 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCGT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
91687 CTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
91752 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
* *
91817 AAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAAGAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* *
91882 TCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATTGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
91947 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
*
92000 TGTAGACACCTCATTTTGTCCGGGCAAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
** *
92065 TTCGACGTATGTGGGGACAAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
92130 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
92195 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTTGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
92260 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
* *
92325 AAAACCTAGTAGGGAGGAGAAACCCTACAAAATCATTTTTTTCATCGGAATTGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* * * * * * *
92390 TCTTCATCACGGTGAAGCCTTAGTAACACAGGGGTCATAACATGCTGCCGCGGACAAAATGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
* *
92455 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACAGCCAAAGAGGGGTAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* * * * *
92508 TGTAGTCAGCTCATTTTGTCCGGGCCAATTTTCGATAATTTGAGGCCTAGGTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
* * * * *
92573 TTCGACATATGTGGGGACGAAATGGTGACCGTAATTCAGCATATTGACATCCTTTTTCTCATGTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
92638 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCGT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
92703 CTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
92768 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
* *
92833 AAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAAGAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* *
92898 TCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATTGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
92963 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
*
93016 TGTAGACACCTCATTTTGTCCGGGCAAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
** *
93081 TTCGACGTATGTGGGGACAAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
93146 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
93211 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTTGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
93276 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
* *
93341 AAAACCTAGTAGGGAGGAGAAACCCTACAAAATCATTTTTTTCATCGGAATTGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* * * * * * *
93406 TCTTCATCACGGTGAAGCCTTAGTAACACAGGGGTCATAACATGCTGCCGCGGACAAAATGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
*
93471 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACAGCCAAAGA-GGGCTAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGC-AGC
* * ** * *
93524 TGTAGTCAGCTCATTTTGTCCGGGCCAATTTTCAATAATTTGAGGCCTAGGTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
* * * * *
93589 TTCGACATATGTGGGGACGAAATGGTGACCGTAATTCAGCATATTGACATCCTTTTTCTCATGTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
93654 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCTTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
93719 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
* *
93784 AAAATCCCTTTCAAACTCTACACCAATCTACAGCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
*
93849 AAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* *
93914 TCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATTGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
93979 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
94032 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
** *
94097 TTCGACGTATGTGGGGACAAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
94162 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
94227 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTTGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
94292 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
*
94357 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATTGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* * * * * *
94422 TCTTCATCACGGTGAAGCCTTAGTCACACAGGGGTCATAACATGCTGCCGCGGACAAAATGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
* *
94487 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACAGCCAAAGAGGGGTAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* * * *
94540 TGTAGTCAGCTCATTTTGTCCGGGCCAATTTTCGATAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
* * * * *
94605 TTCGACATATGTGGGGACGAAATGGTGACCGTAATTCAGCATATTGACATCCTTTTTCTCATGTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
94670 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCTTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
94735 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
*
94800 AAAATCCCTTTCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
*
94865 AAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* ** * *
94930 TCTTCATGACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGTAGAGAAATTGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
94995 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
95048 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
*
95113 TTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
95178 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
95243 CTTTAAGTCTAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
95308 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
95373 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
*
95438 TCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
95503 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
*
95556 TGTAGACACCTACATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGACG
1 TGTAGACACCT-CATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAG
*
95621 ATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCT
65 ATTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCT
*
95686 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCA
130 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
*
95751 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTTGCACATTGCAATGACCATAATCTTC
195 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
95816 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
260 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
*
95881 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATTGCCGCCAATAGG
325 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
* * * *
95946 CTCTTCATCACGGCGAAGCCTTAGTCACACAG-GGTCATAACATGCTGCCGCGGACAAAATGGTG
390 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
*
96010 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGC
455 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* * * *
96064 TGTAGTCAGCTCATTTTGT-CGGGCCAATTTTCGATAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
* * *
96128 TTCGACATATGTGGGGACGAAATGGTGACCGT-AATCAGCACTATTGACATCCTTTTTCTCATGT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCAC-ATTGACATCCTTTTTCTCATCT
96192 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
130 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
96257 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
195 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
96322 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
260 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
*
96387 CAAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
325 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
* * *
96452 CTCTTCATGACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCAGACAAATTGGTG
390 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
96517 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
455 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
96571 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
*
96636 TTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
96701 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
96766 CTTTAAGTCTAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
*
96831 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGCCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
* *
96896 AAAACCTAGTAGGGAGGAGAAACCCTACAAGCTCATTTTTTTCCAGCGGAATCGCCGCCAATAGG
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTT-CATCGGAATCGCCGCCAATAGG
* *
96961 CTCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCTGCGGACAAAATGGTG
390 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
97026 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
455 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* *
97080 TGTAGACACCACATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGACGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
*
97145 TTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
* *
97210 TAAACCCAATATCGTTGGCCGTGAATCAATGTATTGGCCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
* *
97275 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTTGCACATTGCAATAACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
*
97340 AAAATCCCTTCCAAACTCTACCCCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
* *
97405 AAAACCTAGTAGGGAGGAGAAACCCTACAAAATCATTTTTTTCATCGGAATTGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* * * * * *
97470 TCTTCATCACGGTGAAGCCTTAGTCACACAGGGGTCATAACATGCTGCCGCGGACAAAATGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
*
97535 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* * * *
97588 TGTAGTCAGCTCATTTTGTCCGGGCCAATTTTCGATAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
* * * * *
97653 TTCGACATATGTGGGGACGAAATGGTGACCGTAATTCAGCATATTGACATCCTTTTTCTCATGTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
97718 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
97783 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
*
97848 AAAATCCCTTTCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
*
97913 AAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* ** * *
97978 TCTTCATGACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGTAGAGAAATTGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
98043 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
98096 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
*
98161 TTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
98226 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
*
98291 CTTTAAGTCTAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
98356 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
*
98421 AAAACCTAGTAGGGAGGAGAAACCCTACAAGCTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
*
98486 TCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
98551 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
*
98604 TGTAGACACCATCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGACG
1 TGTAGACACC-TCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAG
*
98669 ATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCT
65 ATTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCT
*
98734 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCA
130 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
*
98799 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTTGCACATTGCAATGACCATAATCTTC
195 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
98864 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
260 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
98929 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
325 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
* * * *
98994 CTCTTCATCACGGCGAAGCCTTAGTCACACAGAGGTCATAACATGCTGCCGCGGACAAAATGGTG
390 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
*
99059 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGC
455 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* * * *
99113 TGTAGTCAGCTCATTTTGTCCGGGCCAATTTTCGATAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
**
99178 TTCGACGTATGTGGGGACGAAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCT
66 TTCGATATATGTGGGGACG-AATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCT
99243 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
130 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
99308 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
195 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
99373 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
260 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
*
99438 CAAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
325 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
* * *
99503 CTCTTCATGACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCAGACAAATTGGTG
390 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
99568 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
455 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
99622 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
99687 TTCGATATATGTGGGGACGAATTGGTGACCAGTAAATCAGCACATTGACATCCTTTTTCTCATCT
66 TTCGATATATGTGGGGACGAATTGGTGACC-GTAAATCAGCACATTGACATCCTTTTTCTCATCT
*
99752 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCA
130 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
*
99817 TCTTTAAGTCTAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
195 TCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
99882 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
260 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
99947 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
325 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
*
100012 CTCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATGGTG
390 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
100077 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
455 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* *
100131 TGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCCTAGCTAGTAGGTGGACGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
*
100196 TTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
*
100261 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
* *
100326 CTTTAAGTCTAGTGTTGCGGGCCTTGAATCTGCACAGTTGCACATTGCAATGACCATAATCTTCC
196 CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
100391 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
261 AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
100456 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
326 AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
* * * *
100521 TCTTCATCACGGCGAAGCCTTAGTCACACAGAGGTCATAACATGCTGCCGCGGACAAAATGGTGT
391 TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
100586 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
456 CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* *
100639 TGTAGACACCTCATTTTGTCCGGGCCAATTTTCGATAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
100704 TTCGACTATATGTGGGGACGAAATTGGTGACCGT-AATCAGCACATTGACATCCTTTTTCTCATC
66 TTCGA-TATATGTGGGGACG-AATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATC
100768 TTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATC
129 TTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATC
100833 ATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTT
194 ATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTT
100898 CCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATT
259 CCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATT
100963 CCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAG
324 CCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAG
* *
101028 GCTCTTCATCACGGCGAAGCATTAATCACCCAAAGGTCATAACATGCGGCCGCAGACAAAATGGT
389 GCTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGT
101093 GTCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
454 GTCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
101148 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
1 TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
*
101213 TTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCTT
66 TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
101278 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
131 TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
101343 CTTTAAGTCCTAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
196 CTTTAAGTCC-AGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTC
101408 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
260 CAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTC
101473 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
325 CAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGG
101538 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
390 CTCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTG
* *
101603 TCTTTTTGTCTTTGGCCTATTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
455 TCTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
* *
101657 TGTAGACACCATCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCCTAGCTAGTAGGTGGACG
1 TGTAGACACC-TCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAG
*
101722 ATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACATTGACATCCTTTTTCTCATCT
65 ATTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCT
*
101787 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTTTATCACTCTTCATCCTCATCA
130 TTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCA
101852 TCTTTAAGTCCTAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTT
195 TCTTTAAGTCC-AGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTT
101917 CCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATT
259 CCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATT
101982 CCAAAACCTAGTAGGGAGGAG-AACCCTACAAACTC
324 CCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTC
102017 CTTAGTCACA
Statistics
Matches: 9615, Mismatches: 386, Indels: 31
0.96 0.04 0.00
Matches are distributed among these distances:
505 9 0.00
506 376 0.04
507 123 0.01
508 5565 0.58
509 3198 0.33
510 344 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (508 bp):
TGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGAGGCCTAGCTAGTAGGTGGAAGA
TTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACATTGACATCCTTTTTCTCATCTT
TAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCTTCATCCTCATCAT
CTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCACATTGCAATGACCATAATCTTCC
AAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCC
AAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTCATCGGAATCGCCGCCAATAGGC
TCTTCATCACGGCGAAGCATTAATCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGT
CTATTTGTCTTTGGCCTGTTCCTGATACTCAGAAACGGCCAAAGAGGGGCAGC
Found at i:102450 original size:455 final size:461
Alignment explanation
Indices: 101562--102472 Score: 1687
Period size: 455 Copynumber: 2.0 Consensus size: 461
101552 GAAGCATTAA
*
101562 TCACCCAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTTTTTGTCTTTGGCCTATTCCT
1 TCACACAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTTTTTGTCTTTGGCCTATTCCT
101627 GATACTCAGAAACGGCCAAAGAGGGGCAGCTGTAGACACCATCATTTTGTCCGGGCCAATTTTCG
66 GATACTCAGAAACGGCCAAAGAGGGGCAGCTGTAGACACCATCATTTTGTCCGGGCCAATTTTCG
* * *
101692 ACAATTTGAGGCCTAGCTAGTAGGTGGACGATTCGATATATGTGGGGACGAATTGGTGACCATAA
131 ACAATTTGAGGCCTAGCTAGTAGGTGGAAGATTCGATAAATGTGGGGACAAATTGGTGACCATAA
101757 ATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTAT
196 ATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTAT
101822 TGGCCCTTTTATCACTCTTCATCCTCATCATCTTTAAGTCCTAGTGTTGCGGGCCTTGAATCTGC
261 TGGCCCTTTTATCACTCTTCATCCTCATCATCTTTAAGTCCTAGTGTTGCGGGCCTTGAATCTGC
101887 ACAGTGGCACATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACAC
326 ACAGTGGCACATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACAC
101952 CTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAG-AACCCTACAAACT
391 CTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACT
102016 CCTTAG
456 CCTTAG
*
102022 TCACACAGAGGTCATAACATGCGG-CGCAGGAC-AAATGGTGT-TTATTTGTCTTTGGCCTGTTC
1 TCACACAGAGGTCATAACATGCGGCCGC-GGACAAAATGGTGTCTT-TTTGTCTTTGGCCTATTC
102084 CTGATACTCAGAAACGGCCAAAGAGGGGCAGCTGTAGACAACC-TCATTTTGTCCGGGCCAATTT
64 CTGATACTCAGAAACGGCCAAAGAGGGGCAGCTGTAGAC-ACCATCATTTTGTCCGGGCCAATTT
102148 T-GACAA-TTGAGGCCTAGCTAGTAGGTGGAAGATTCGATAAATGTGGGGACAAATTGGTGACCA
128 TCGACAATTTGAGGCCTAGCTAGTAGGTGGAAGATTCGATAAATGTGGGGACAAATTGGTGACCA
102211 TAAATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACG
193 TAAATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACG
102276 TATTGG-CCTTTTATCACTCTTCATCCTCATCATCTTTAAGTCC-AGTGTTGCGGGCCTTGAATC
258 TATTGGCCCTTTTATCACTCTTCATCCTCATCATCTTTAAGTCCTAGTGTTGCGGGCCTTGAATC
102339 TGCACAGTGGCACATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTA
323 TGCACAGTGGCACATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTA
102404 CACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAA
388 CACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAA
102469 ACTC
453 ACTC
102473 ATTTTTTTCA
Statistics
Matches: 442, Mismatches: 5, Indels: 12
0.96 0.01 0.03
Matches are distributed among these distances:
455 139 0.31
456 51 0.12
457 125 0.28
458 7 0.02
459 90 0.20
460 30 0.07
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (461 bp):
TCACACAGAGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTTTTTGTCTTTGGCCTATTCCT
GATACTCAGAAACGGCCAAAGAGGGGCAGCTGTAGACACCATCATTTTGTCCGGGCCAATTTTCG
ACAATTTGAGGCCTAGCTAGTAGGTGGAAGATTCGATAAATGTGGGGACAAATTGGTGACCATAA
ATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTAT
TGGCCCTTTTATCACTCTTCATCCTCATCATCTTTAAGTCCTAGTGTTGCGGGCCTTGAATCTGC
ACAGTGGCACATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACAC
CTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACT
CCTTAG
Found at i:108774 original size:505 final size:508
Alignment explanation
Indices: 102030--109518 Score: 13729
Period size: 508 Copynumber: 14.7 Consensus size: 508
102020 AGTCACACAG
*
102030 AGGTCATAACATGCGG-CGCAGGAC-AAATGGTGTTTATTTGTCTTTGGCCTGTTCCTGATACTC
1 AGGTCATAACATGCGGCCGC-GGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTC
102093 AGAAACGGCCAAAGAGGGGCAGCTGTAGACAACCTCATTTTGTCCGGGCCAATTTT-GACAA-TT
65 AGAAACGGCCAAAGAGGGGCAGCTGTAGAC-ACCTCATTTTGTCCGGGCCAATTTTCGACAATTT
* *
102156 GAGGCCTAGCTAGTAGGTGGAAGATTCGATAAATGTGGGGACAAATTGGTGACCATAAATCAGCA
129 GAGGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCA
102221 CATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGG-CCT
194 CATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCT
102285 TTTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGC
259 TTTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGC
102350 ACATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAA
324 ACATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAA
102415 GGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTT
389 GGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTT
102480 TCATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCC-A
454 TCATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
102534 AGGTCATAACATGCGG-CGCGGACAAAATGGTGTTTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
102598 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
*
102663 GGCCTAGCTAGTAGGTGGACGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
*
102728 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
102793 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
102858 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
102923 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
102988 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
103041 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
*
103106 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
* *
103171 GGCCTAGCTAGTAGGTGGAAGATTCGATGTATGTGGGGACAAATTGGTGACCATAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
103236 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
103301 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
103366 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
103431 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
* * * * *
103496 ATCGAAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCCTTAGTCACACAG
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
103549 AGGTCATAACATGCTGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
103614 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
*
103679 GGCCTAGCTAGTAGGTGGACGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
*
103744 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
103809 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
103874 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
* *
103939 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAACCCTACAAACCCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
* *
104004 ATCGGAATCGCCGCCAATAGGCTCTTCATGACGGCGAAGCATTAATCACCCAG
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
* *
104057 AGGTCATAACATGCGGCCGCAGACAAATTGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
*
104122 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
* * *
104187 GGCCTAGCTAGTAGGTGGAAGATTCGATGTATGTGGGGACAAATTGGTGACCATAAATCATCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
104252 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
104317 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
104382 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
104447 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
* *
104512 ATCGAAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAGTCACCCAA
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
104565 AGGTCATAACATGCTGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
104630 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
*
104695 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCGTAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
*
104760 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
104825 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
104890 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
104955 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
* * * *
105020 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCCTTAGTCACACAG
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
105073 AGGTCATAACATGCTGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
105138 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
** *
105203 GGCCTAGCTAGTAGGTGGAAGATTCGACGTATGTGGGGACGAATTGGTGACCGTAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
105268 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
105333 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
105398 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
105463 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
105528 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
105581 AGGTCATAACATGCGGCCGCAGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
105646 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
** * *
105711 GGCCTAGCTAGTAGGTGGAAGATTCGACGTATGTGGGGACAAATTGGTGACCGTAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
105776 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
105841 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
105906 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
105971 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
* * * * *
106036 ATCGAAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCCTTAGTCACACAG
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
* *
106089 AGGTCATAACATGCTGCCGCGGACAAAATGGTGTTTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
106154 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
*
106219 GGCCTAGCTAGTAGGTGGACGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
*
106284 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
106349 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
106414 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
106479 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
106544 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
106597 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
106662 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
** * *
106727 GGCCTAGCTAGTAGGTGGAAGATTCGACGTATGTGGGGACAAATTGGTGACCGTAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
106792 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
106857 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
106922 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
*
106987 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTAAAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
* *
107052 ATCGAAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATAACCCAA
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
107105 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTATTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
*
107170 AAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
* *
107235 GGCCTAGCTAGTAGGTGGACGATTCGATATATGTGGGGACGGATTGGTGACCATAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
*
107300 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGCCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
107365 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
107430 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
*
107495 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
*
107560 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAG
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
107613 AGGTCATAACATGCGGCCGCAGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
*
107678 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTTGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
* * *
107743 GGCCTAGCTAGTAGGTGGAAGATTCGATGTATGTGGGGACAAATTGGTGACCGTAAATCAGCACA
131 GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
107808 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
196 TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
107873 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
261 TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
107938 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
326 ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
108003 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
391 AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
108068 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATT-ATCACCCAA
456 ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
108120 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
108185 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
*
108250 GGCCTAGCTAGTAGGTGGAAGATTCGACTATATGTGGGGACGAATTGGTGACCGTAAATCAGCAC
131 GGCCTAGCTAGTAGGTGGAAGATTCGA-TATATGTGGGGACGAATTGGTGACCATAAATCAGCAC
108315 ATTGACATCCTTTTTCTCATCTTTAAACCCAATAT-G-TGGCCGTGAATCAACGTATTGGTCCTT
195 ATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTT
*
108378 TTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGTGCCTTGAATCTGCACAGTGGCA
260 TTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCA
108443 CATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAG
325 CATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAG
108508 GAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTT
390 GAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTT
* * *
108573 CATCGGAATCGCCGCCAAATAGGCTCTTCATCACGGCGAAGCATTAGTCACACAG
455 CATCGGAATCGCCGCC-AATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
108628 AGGTCATAACATGCGGCCGCGGAC-AAATGGTGT-TA-TTGTCTTTGGCCTGTTCCTGATACTCA
1 AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
108690 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGT-CGGGCCAATTTTCGACTAATTTG
66 GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGAC-AATTTG
* *
108754 AGGCCTAGCTAGTAGGTGGAAGATTCGATGTATTGTGGGGACGAAATTGGTGACCATAACTCAGC
130 AGGCCTAGCTAGTAGGTGGAAGATTCGATATA-TGTGGGGACG-AATTGGTGACCATAAATCAGC
108819 A-ACTTGACATCCTTTTTCTCATCTTTAAACCCAATTATCGTTGGCCGGTGAATCAACGTATTGG
193 ACA-TTGACATCCTTTTTCTCATCTTTAAACCCAA-TATCGTTGGCC-GTGAATCAACGTATTGG
*
108883 TCCTTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCC-TGAATCTGCCCAG
255 TCCTTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAG
* *
108947 TGGCACATTGCAATGACCATAGATC-TCCAAAATCCCCTTCCAAAAGTCTACCACCCAATATA-A
320 TGGCACATTGCAATGACCATA-ATCTTCCAAAAT-CCCTTCC-AAACTCTA-CA-CCAATCTACA
*
109010 GCCTATTTAAGGAGGTCAAGCCTTAGAAAATTCCAAAA-CTAGTAGGGAGGAGAAACCCTACAAA
380 -CCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAA
*
109074 CTCATTTTTTTCATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACACAA
444 CTCATTTTTTTCATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
*
109139 AGGTCATAACATGCGGCCCGCGGACAAAATGGTGTATATTTGTCTTTGGCCTGTTCCTGATACTC
1 AGGTCATAACATGCGG-CCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTC
109204 AGAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTCAATTTTCGACAATTT
65 AGAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGC-CAATTTTCGACAATTT
* *
109269 GAGGACCTAGC--GTAGGTGGACGA-TCGATATATGTGGGGACGGATTGGTGACCATAAATCAGC
129 GAGG-CCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGC
109331 ACATTGACATCCTTTTTCTCATC-TTAAACCC-ATATCGTTGGCCGTGAATC-ACGTATTGG-CC
193 ACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCC
* *
109392 CTTTA-CACTCTTCATCCTCATCATCTTTATGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGG
258 TTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGG
* *
109456 CACATTGCAATGATGACCATAATCTTCCAAAAAT-CCTTCCAAAATCTACTTACCCATCTACAC
323 CACATTGC-A--ATGACCATAATCTTCC-AAAATCCCTTCCAAACTCTAC--ACCAATCTACAC
109519 ATCTTCGTAA
Statistics
Matches: 6796, Mismatches: 149, Indels: 77
0.97 0.02 0.01
Matches are distributed among these distances:
503 29 0.00
504 112 0.02
505 279 0.04
506 571 0.08
507 245 0.04
508 5055 0.74
509 69 0.01
510 83 0.01
511 67 0.01
512 104 0.02
513 63 0.01
514 9 0.00
515 79 0.01
516 14 0.00
517 17 0.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (508 bp):
AGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCCTGATACTCA
GAAACGGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGA
GGCCTAGCTAGTAGGTGGAAGATTCGATATATGTGGGGACGAATTGGTGACCATAAATCAGCACA
TTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTT
TATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTTGCGGGCCTTGAATCTGCACAGTGGCAC
ATTGCAATGACCATAATCTTCCAAAATCCCTTCCAAACTCTACACCAATCTACACCTATCTAAGG
AGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGAGAAACCCTACAAACTCATTTTTTTC
ATCGGAATCGCCGCCAATAGGCTCTTCATCACGGCGAAGCATTAATCACCCAA
Done.