genome.fa.s2384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2384
Parameters: 2 7 7 80 10 50 1000
Length:  47548

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9049--9079	13	2.4	13	94	0	53	35	12	16	35	1.87
9029--9091	33	1.9	32	87	12	92	30	17	14	38	1.89
9145--9171	13	2.1	13	100	0	54	40	14	14	29	1.86
9983--10037	20	2.7	21	85	2	76	27	18	14	40	1.89
10534--10720	52	3.6	52	77	5	153	35	17	24	23	1.95
10805--10965	31	5.1	33	78	13	178	22	15	31	31	1.95
10922--11006	43	2.0	42	86	4	118	20	23	28	28	1.99
10965--11054	33	2.8	33	83	3	112	21	18	28	31	1.97
11074--11405	29	11.3	29	76	7	267	33	12	28	26	1.92
11074--11481	29	13.8	29	76	7	243	33	13	28	25	1.93
11157--11381	89	2.5	90	86	1	301	35	11	27	25	1.90
11219--11563	29	11.3	30	77	10	191	33	14	26	25	1.94
11446--11640	72	2.8	72	81	8	206	34	15	25	24	1.95
11583--11702	30	4.1	28	75	10	89	33	16	25	25	1.96
12514--12597	33	2.5	33	88	0	114	33	7	25	34	1.83
12827--12869	9	4.4	10	82	11	54	6	0	13	79	0.93
12869--12910	18	2.3	18	87	0	57	42	4	26	26	1.75
14771--14795	13	1.9	13	100	0	50	32	16	16	36	1.90
14769--14848	33	2.4	33	97	0	151	30	18	18	32	1.95
14784--14849	20	3.7	20	69	26	74	30	18	19	31	1.96
14878--14931	19	2.8	19	80	2	63	35	14	18	31	1.91
17434--17471	13	3.1	13	77	14	53	36	13	15	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18506--18530	13	1.9	13	100	0	50	36	16	16	32	1.90
23305--23335	13	2.4	13	94	0	53	35	12	16	35	1.87
23283--23351	33	2.1	33	86	5	95	36	17	13	33	1.88
23401--23465	32	2.0	33	84	3	87	43	15	13	27	1.85
24052--24155	46	2.3	46	91	0	181	29	19	2	48	1.63
26566--26663	21	4.7	21	88	2	101	34	13	17	34	1.88
26754--26808	20	2.8	20	82	0	74	23	14	16	45	1.84
29155--29275	51	2.4	51	83	8	165	29	26	12	31	1.93
29333--29385	27	2.0	27	96	0	97	24	28	18	28	1.98
29338--29407	27	2.6	27	86	2	86	24	31	21	22	1.98
29394--29614	52	4.3	51	76	7	160	30	25	11	33	1.91
29602--29671	28	2.5	28	83	0	86	24	34	17	24	1.96
31813--31847	4	8.8	4	90	0	52	25	2	0	71	1.00
42162--42227	11	6.1	10	75	15	51	83	6	10	0	0.81
42162--42209	15	3.2	15	91	5	71	87	8	4	0	0.66
43188--44021	59	14.3	59	94	0	1400	25	28	20	25	1.99
44889--44914	13	2.0	13	100	0	52	30	15	15	38	1.88
44869--44932	33	1.9	33	87	0	92	25	15	17	42	1.88
47220--47337	51	2.3	50	84	7	157	28	24	13	33	1.93
47395--47469	26	2.8	27	84	6	89	24	33	20	22	1.97
47400--47469	28	2.6	26	84	6	86	24	34	21	20	1.97
47321--47520	102	1.9	104	83	3	260	26	28	16	29	1.96

Tables:   1

The End!