genome.fa.s2385.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2385
Parameters: 2 7 7 80 10 50 1000
Length:  67521

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904--948	21	2.1	21	84	8	56	22	20	4	53	1.63
7413--7437	13	1.9	13	100	0	50	36	16	16	32	1.90
7500--7524	13	1.9	13	100	0	50	32	16	16	36	1.90
7478--7544	33	2.0	33	85	0	89	40	14	11	32	1.83
8481--9027	49	11.5	49	81	6	671	31	18	25	25	1.97
8480--9027	92	5.8	92	91	4	819	31	18	25	25	1.97
8559--9027	141	3.3	141	81	8	608	31	17	25	25	1.97
8480--9027	190	2.9	188	91	3	872	31	18	25	25	1.97
9032--9200	33	5.2	32	89	5	243	19	18	34	27	1.95
9032--9196	65	2.5	66	90	2	262	18	18	34	27	1.95
9171--9523	71	5.1	73	82	10	209	33	13	32	20	1.91
9184--9508	37	9.3	36	81	9	327	32	12	34	20	1.90
9204--9533	102	3.2	101	83	9	359	34	13	32	19	1.90
9514--9570	30	1.9	30	96	0	105	31	19	24	24	1.98
10190--10338	49	3.0	49	95	0	262	28	25	12	33	1.93
11183--11235	21	2.6	21	84	3	72	30	15	15	39	1.87
11223--11247	13	1.9	13	100	0	50	36	16	16	32	1.90
11205--11268	33	1.9	33	87	6	94	31	15	17	35	1.91
11818--11877	20	3.2	20	71	26	67	40	23	0	36	1.55
11818--11890	36	2.0	36	94	0	128	35	23	1	39	1.63
11833--11891	18	3.3	17	70	25	50	35	20	1	42	1.62
19918--19982	32	2.0	32	88	11	96	29	15	16	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19939--19964	13	2.0	13	100	0	52	30	15	15	38	1.88
20024--20076	20	2.6	21	82	8	65	28	16	16	37	1.91
20064--20088	13	1.9	13	100	0	50	36	16	16	32	1.90
20406--20496	43	2.1	43	89	0	146	24	26	18	30	1.98
20453--20708	52	4.9	52	76	6	241	24	27	14	33	1.94
20450--20708	104	2.5	104	80	4	317	24	27	13	34	1.93
20644--20783	61	2.3	61	86	2	192	25	25	10	39	1.87
21686--21742	29	2.0	29	89	0	87	35	17	29	17	1.93
22875--22922	13	3.7	13	74	20	55	77	2	0	20	0.88
22891--22922	16	2.0	16	93	0	55	78	3	0	18	0.89
34037--35049	42	24.1	42	76	4	714	16	28	16	37	1.91
35643--35708	31	2.1	31	91	0	105	37	19	25	16	1.93
36148--36220	34	2.1	34	82	9	87	71	1	4	23	1.11
36175--36217	23	1.9	22	86	13	61	74	0	2	23	0.93
36872--36909	19	2.0	19	85	10	51	18	36	21	23	1.95
37874--37919	13	3.5	13	80	13	51	76	4	0	19	0.96
37890--37921	16	2.0	16	93	0	55	78	3	0	18	0.89
39570--39635	33	2.0	33	84	0	87	37	13	10	37	1.80
46685--46749	20	3.3	19	78	19	71	86	12	0	1	0.65
46685--46748	22	2.9	21	86	6	83	85	12	0	1	0.66
46678--46749	29	2.4	29	82	11	92	83	13	1	1	0.79
46685--46749	15	4.3	15	82	7	78	86	12	0	1	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46686--46749	7	8.9	7	76	19	60	85	12	0	1	0.66
47923--48167	63	3.9	62	78	8	235	22	29	13	33	1.93
47951--48167	33	6.8	33	83	4	230	23	29	13	34	1.92
48086--48176	30	2.9	30	82	9	119	23	32	12	31	1.91
48185--48266	27	3.0	27	81	1	83	21	31	14	31	1.94
48194--48317	28	4.3	27	73	14	79	20	32	15	31	1.94
48220--48359	60	2.3	61	82	7	160	20	30	14	34	1.92
48365--48535	91	1.9	91	83	2	227	26	23	15	33	1.95
48800--49062	52	5.4	49	80	11	261	25	25	16	33	1.96
48741--49014	49	5.9	45	72	16	161	24	25	18	32	1.97
48920--49082	52	3.1	51	84	5	202	24	23	15	36	1.94
48363--49013	95	7.0	95	72	12	433	25	24	17	32	1.97
49846--49870	13	1.9	13	100	0	50	36	16	16	32	1.90
49823--49890	33	2.1	33	88	2	102	32	14	17	35	1.91
49944--49993	20	2.5	20	86	0	64	38	16	16	30	1.90
50851--58095	476	15.3	476	82	3	8037	31	17	13	36	1.89
51968--58063	950	6.4	949	84	3	6958	32	17	13	36	1.89
58387--58459	20	3.6	20	81	3	101	35	13	19	31	1.91
58387--58481	41	2.3	42	96	1	174	40	12	17	29	1.87
58520--58545	13	2.0	13	100	0	52	38	15	15	30	1.88
60762--60806	21	2.1	21	84	8	56	53	4	20	22	1.63
64715--64752	13	2.9	13	96	0	67	34	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67173--67245	20	3.6	20	81	3	101	35	13	19	31	1.91
67173--67264	41	2.3	39	96	3	166	39	13	17	30	1.87
67303--67328	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1

The End!