Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2387
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75082
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Found at i:1582 original size:19 final size:20
Alignment explanation
Indices: 1560--1600 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
1550 TTAATTATCT
*
1560 TTTAATATTTTA-TTTTATA
1 TTTAATATATTATTTTTATA
*
1579 TTTATTATATTATTTTTATA
1 TTTAATATATTATTTTTATA
1599 TT
1 TT
1601 ATGATTACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTAATATATTATTTTTATA
Found at i:3075 original size:16 final size:16
Alignment explanation
Indices: 3056--3099 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
3046 TATCAATAAA
*
3056 TAAATATATATTATAT
1 TAAATATTTATTATAT
3072 TAAATATTTATTATAT
1 TAAATATTTATTATAT
*
3088 TTAATATTTATT
1 TAAATATTTATT
3100 TTTTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TAAATATTTATTATAT
Found at i:3137 original size:18 final size:18
Alignment explanation
Indices: 3110--3144 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3100 TTTTATATAA
* *
3110 TTAATTAATTTAATTGAT
1 TTAATAAATTGAATTGAT
3128 TTAATAAATTGAATTGA
1 TTAATAAATTGAATTGA
3145 CTGAACCAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (18 bp):
TTAATAAATTGAATTGAT
Found at i:3487 original size:11 final size:11
Alignment explanation
Indices: 3471--3498 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
3461 TTTGTAATTA
3471 TTAAATTTAAT
1 TTAAATTTAAT
3482 TTAAATTTAAT
1 TTAAATTTAAT
3493 TTAAAT
1 TTAAAT
3499 AATTTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:3540 original size:27 final size:27
Alignment explanation
Indices: 3472--3558 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
3462 TTGTAATTAT
*
3472 TAAATTT-AATTTAAATTTA-ATTTAA
1 TAAATTTAAAATTAAATTTATATTTAA
*
3497 -ATAATTTATATAA-TAAATTAATATTTAA
1 TA-AATTTA-A-AATTAAATTTATATTTAA
3525 TAAATTTAAAATTAAATATTATATTT-A
1 TAAATTTAAAATTAAAT-TTATATTTAA
3552 TAAATTT
1 TAAATTT
3559 TTATTTTTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
24 1 0.02
25 5 0.10
26 2 0.04
27 22 0.43
28 20 0.39
29 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
TAAATTTAAAATTAAATTTATATTTAA
Found at i:4138 original size:29 final size:30
Alignment explanation
Indices: 4106--4173 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
4096 TTATTAATAA
* *
4106 TTATTTTATTATAAATTT-TAATATATTTT
1 TTATTTAATAATAAATTTATAATATATTTT
* *
4135 TTATTTAATAATATATTTATATTATATTTT
1 TTATTTAATAATAAATTTATAATATATTTT
4165 AATTATTTA
1 --TTATTTA
4174 TTACATTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 15 0.47
30 10 0.31
32 7 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (30 bp):
TTATTTAATAATAAATTTATAATATATTTT
Found at i:4143 original size:40 final size:38
Alignment explanation
Indices: 4095--4172 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 38
4085 TAAAAATTAA
4095 TTTATTAATAAT-TATTT-TATTATAAATTTTAATATATTT
1 TTTATTAATAATATATTTATATTAT--ATTTTAAT-TATTT
4134 TTTATTTAATAATATATTTATATTATATTTTAATTATTT
1 TTTA-TTAATAATATATTTATATTATATTTTAATTATTT
4173 ATTACATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
39 9 0.25
40 16 0.44
41 5 0.14
42 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (38 bp):
TTTATTAATAATATATTTATATTATATTTTAATTATTT
Found at i:5366 original size:16 final size:16
Alignment explanation
Indices: 5347--5377 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5337 AGTAATATCG
5347 ATATAAATATATATTA
1 ATATAAATATATATTA
*
5363 ATATATATATATATT
1 ATATAAATATATATT
5378 TAATTTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATAAATATATATTA
Found at i:6003 original size:25 final size:27
Alignment explanation
Indices: 5954--6003 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
5944 ATATTTGATG
* *
5954 TATTAATATTATTAGTAAATCAAATAA
1 TATTAATATTATTAGAAAATAAAATAA
5981 TATTAAT-TTATTA-AAAATAAAAT
1 TATTAATATTATTAGAAAATAAAAT
6004 TATTTGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 6 0.29
27 7 0.33
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (27 bp):
TATTAATATTATTAGAAAATAAAATAA
Found at i:7751 original size:62 final size:59
Alignment explanation
Indices: 7673--7790 Score: 139
Period size: 62 Copynumber: 1.9 Consensus size: 59
7663 GATATTATCA
**
7673 TAAATTTAAAAAATTAAATATAATTTTTTATAAAATTGATAAAT-ATTAAATAAAATTACT
1 TAAATTTAAAAAATTAAATATAATTACTTATAAAATTGAT-AATCATTAAA-AAAATTACT
* * **
7733 TAAATTTAATGAATATTAAATATAGTTACTTATAATTTTGATAATCATTAAAAAAATT
1 TAAATTTAA--AAAATTAAATATAATTACTTATAAAATTGATAATCATTAAAAAAATT
7791 TAGCTTTACT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
60 9 0.18
61 9 0.18
62 31 0.63
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (59 bp):
TAAATTTAAAAAATTAAATATAATTACTTATAAAATTGATAATCATTAAAAAAATTACT
Found at i:8514 original size:23 final size:23
Alignment explanation
Indices: 8446--8515 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 23
8436 ATGGATTGAG
8446 TTAAAT-TTTTT-AT-TTTATATA
1 TTAAATATTTTTAATATTTAT-TA
* **
8467 TAAAATGATTTTACTAATAAGTATTA
1 TTAAAT-ATTTT--TAATATTTATTA
8493 TTAAATATTTTTAATATTTATTA
1 TTAAATATTTTTAATATTTATTA
8516 AAATTTATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
21 5 0.14
23 14 0.38
25 6 0.16
26 9 0.24
27 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (23 bp):
TTAAATATTTTTAATATTTATTA
Found at i:9024 original size:20 final size:19
Alignment explanation
Indices: 8990--9028 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
8980 AGAGCTTTAT
8990 CTCAAATTAAGTTAACTCGA
1 CTCAAATTAAGTTAA-TCGA
9010 CTCAAATTGAA-TTAATCGA
1 CTCAAATT-AAGTTAATCGA
9029 GATTTAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 12 0.67
21 2 0.11
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (19 bp):
CTCAAATTAAGTTAATCGA
Found at i:9977 original size:18 final size:18
Alignment explanation
Indices: 9954--10007 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 18
9944 TTATTAATTA
9954 AAATATTTAAATATATAT
1 AAATATTTAAATATATAT
9972 AAATA-TTAAAT-T-TA-
1 AAATATTTAAATATATAT
9986 AAATATTATTAAA-ATATAT
1 AAATA-T-TTAAATATATAT
10005 AAA
1 AAA
10008 ATAATTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
14 5 0.17
15 2 0.07
16 1 0.03
17 12 0.40
18 7 0.23
19 3 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATATTTAAATATATAT
Found at i:10019 original size:22 final size:20
Alignment explanation
Indices: 9957--10024 Score: 56
Period size: 22 Copynumber: 3.5 Consensus size: 20
9947 TTAATTAAAA
* *
9957 TATTTAAATATATATAA-A-
1 TATTAAAATATATAAAATAT
9975 TATT-AAAT-T-TAAAATAT
1 TATTAAAATATATAAAATAT
9992 TATTAAAATATATAAAATAATT
1 TATTAAAATATATAAAAT-A-T
*
10014 TATTAATATAT
1 TATTAAAATAT
10025 TTTTATATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
15 4 0.10
16 2 0.05
17 8 0.20
18 8 0.20
19 1 0.02
20 6 0.15
21 1 0.02
22 11 0.27
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TATTAAAATATATAAAATAT
Found at i:10178 original size:21 final size:22
Alignment explanation
Indices: 10147--10189 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
10137 ATAATCAATC
10147 TCATCTATAAT-ATTAAATTTTA
1 TCATCTATAATAATT-AATTTTA
10169 TCAT-TATAATAATTAATTTTA
1 TCATCTATAATAATTAATTTTA
10190 CTTTTAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
TCATCTATAATAATTAATTTTA
Found at i:10390 original size:9 final size:9
Alignment explanation
Indices: 10369--10450 Score: 52
Period size: 9 Copynumber: 9.7 Consensus size: 9
10359 GATATGAATA
10369 AAATATAAT
1 AAATATAAT
*
10378 TAATA-AAT
1 AAATATAAT
10386 ATAATA-AAT
1 A-AATATAAT
10395 -AATATAAT
1 AAATATAAT
10403 AAATATAAT
1 AAATATAAT
*
10412 --ATAT-TT
1 AAATATAAT
10418 AAATATAATT
1 AAATATAA-T
10428 AAA-ATAAT
1 AAATATAAT
* *
10436 ATATTTAAT
1 AAATATAAT
*
10445 ATATAT
1 AAATAT
10451 TATATTTATA
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
6 1 0.02
7 8 0.14
8 13 0.22
9 32 0.55
10 4 0.07
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAATATAAT
Found at i:10400 original size:12 final size:12
Alignment explanation
Indices: 10370--10407 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
10360 ATATGAATAA
*
10370 AATATAATTAAT
1 AATATAATAAAT
10382 AAATATAATAAAT
1 -AATATAATAAAT
10395 AATATAATAAAT
1 AATATAATAAAT
10407 A
1 A
10408 TAATATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AATATAATAAAT
Found at i:10404 original size:21 final size:20
Alignment explanation
Indices: 10373--10412 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
10363 TGAATAAAAT
10373 ATAATTAATAAATATAATAA
1 ATAATTAATAAATATAATAA
10393 ATAATATAATAAATATAATA
1 ATAAT-TAATAAATATAATA
10413 TATTTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAATTAATAAATATAATAA
Found at i:10438 original size:38 final size:38
Alignment explanation
Indices: 10350--10458 Score: 109
Period size: 36 Copynumber: 2.8 Consensus size: 38
10340 AATTGATAAT
* *
10350 ATTAAATATGATATGAATAAAATATAAT-TA-ATAAATATA
1 ATTAAA-ATAATAT-AAT-AAATATAATATATTTAAATATA
10389 A-T-AAATAATATAATAAATATAATATATTTAAATATA
1 ATTAAAATAATATAATAAATATAATATATTTAAATATA
* *
10425 ATTAAAATAATATATTTAATATATATTATATTTA
1 ATTAAAATAATATA-ATAA-ATATAATATATTTA
10459 TATTTTAATT
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
34 9 0.15
35 5 0.08
36 15 0.25
37 3 0.05
38 11 0.18
39 4 0.07
40 13 0.22
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (38 bp):
ATTAAAATAATATAATAAATATAATATATTTAAATATA
Found at i:10461 original size:24 final size:25
Alignment explanation
Indices: 10371--10449 Score: 92
Period size: 24 Copynumber: 3.2 Consensus size: 25
10361 TATGAATAAA
* * *
10371 ATATAATTAATA-AATATAATAAAT
1 ATATAATTAAAATAATATATTTAAT
10395 AATATAA-TAAATATAATATATTTAA-
1 -ATATAATTAAA-ATAATATATTTAAT
10420 ATATAATTAAAATAATATATTTAAT
1 ATATAATTAAAATAATATATTTAAT
10445 ATATA
1 ATATA
10450 TTATATTTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
24 22 0.47
25 16 0.34
26 9 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
ATATAATTAAAATAATATATTTAAT
Found at i:10473 original size:15 final size:17
Alignment explanation
Indices: 10455--10490 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
10445 ATATATTATA
10455 TTTATA-TTTTAAT-TT
1 TTTATACTTTTAATATT
10470 TTTATACTTTTAATATT
1 TTTATACTTTTAATATT
10487 TTTA
1 TTTA
10491 ATAATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 7 0.37
17 6 0.32
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATACTTTTAATATT
Found at i:10804 original size:21 final size:21
Alignment explanation
Indices: 10756--10804 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
10746 AACTAAAATT
*
10756 TATATTTATTTAATTAATTATT
1 TATATTTA-TTAATTAATTATA
*
10778 TTTATTTA-TAACTTAATTATA
1 TATATTTATTAA-TTAATTATA
10799 TATATT
1 TATATT
10805 CTAATTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 3 0.13
21 13 0.57
22 7 0.30
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATTTATTAATTAATTATA
Found at i:10811 original size:27 final size:25
Alignment explanation
Indices: 10765--10829 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 25
10755 TTATATTTAT
* *
10765 TTAATTAATTATTTTTATTTATAAC
1 TTAATTAATTATTCTAATTTATAAC
*
10790 TTAATTATATATATTCTAATTTATAAA
1 TTAATTA-AT-TATTCTAATTTATAAC
*
10817 TAAATATAATTAT
1 TTAAT-TAATTAT
10830 AATTTTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
25 7 0.21
26 5 0.15
27 19 0.58
28 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (25 bp):
TTAATTAATTATTCTAATTTATAAC
Found at i:11611 original size:15 final size:16
Alignment explanation
Indices: 11584--11616 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
11574 AATTTATTTA
11584 TAAATATTTATGAATT
1 TAAATATTTATGAATT
*
11600 TAAATA-TTATGATTT
1 TAAATATTTATGAATT
11615 TA
1 TA
11617 TATGTTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TAAATATTTATGAATT
Found at i:16457 original size:24 final size:25
Alignment explanation
Indices: 16406--16467 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 25
16396 TTAATTTTTG
* * *
16406 AAAATACTTAATTTATAAATAGAC-
1 AAAATATTTATTTTATAAAGAGACA
* *
16430 AAAATATTTATTTTATAAAGATATA
1 AAAATATTTATTTTATAAAGAGACA
*
16455 AAAATATTAATTT
1 AAAATATTTATTT
16468 AAGTTAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
24 19 0.61
25 12 0.39
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (25 bp):
AAAATATTTATTTTATAAAGAGACA
Found at i:16467 original size:25 final size:24
Alignment explanation
Indices: 16406--16467 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
16396 TTAATTTTTG
16406 AAAATACTTAA-TTTATAAATAGAC
1 AAAATA-TTAATTTTATAAATAGAC
* *
16430 AAAATATTTATTTTATAAAGATATA-
1 AAAATATTAATTTTAT-AA-ATAGAC
16455 AAAATATTAATTT
1 AAAATATTAATTT
16468 AAGTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 3 0.09
24 11 0.34
25 14 0.44
26 4 0.12
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (24 bp):
AAAATATTAATTTTATAAATAGAC
Found at i:16773 original size:17 final size:20
Alignment explanation
Indices: 16736--16774 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
16726 TAATAAAAAT
16736 AATTATTTATATTTTTAATA
1 AATTATTTATATTTTTAATA
16756 AATTA-TTA-ATTTTT-ATA
1 AATTATTTATATTTTTAATA
16773 AA
1 AA
16775 AATAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 6 0.32
19 3 0.16
20 5 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTATTTATATTTTTAATA
Found at i:16777 original size:19 final size:20
Alignment explanation
Indices: 16731--16783 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
16721 AAAATTAATA
16731 AAAATAATTATTTATATTTTT
1 AAAA-AATTATTTATATTTTT
*
16752 AATAAATTA-TTA-ATTTTT
1 AAAAAATTATTTATATTTTT
*
16770 ATAAAAATAATTTA
1 A-AAAAATTATTTA
16784 AAATATAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 7 0.26
19 9 0.33
20 8 0.30
21 3 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAAAATTATTTATATTTTT
Found at i:17589 original size:2 final size:2
Alignment explanation
Indices: 17582--17608 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
17572 ATAATAATCT
17582 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
17609 GTATGTATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19679 original size:17 final size:18
Alignment explanation
Indices: 19652--19686 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
19642 TTTCATGTCA
19652 TAAATAAATTTAAATATT
1 TAAATAAATTTAAATATT
19670 TAAA-AAATTTAAATATT
1 TAAATAAATTTAAATATT
19687 AGATATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAATAAATTTAAATATT
Found at i:32088 original size:2 final size:2
Alignment explanation
Indices: 32081--32127 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
32071 ATTACAAACA
32081 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32123 AT AT A
1 AT AT A
32128 AAGGAAATCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:33989 original size:3 final size:3
Alignment explanation
Indices: 33981--34014 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
33971 GCATACATAA
33981 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
34015 GTAGTAGCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:36092 original size:27 final size:27
Alignment explanation
Indices: 36052--36103 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
36042 GGTTATGACT
** *
36052 TTAAAAGTTTTATCTCTTAATTATTAA
1 TTAAAAGTAGTATCACTTAATTATTAA
*
36079 TTAAAAGTAGTATCACTTGATTATT
1 TTAAAAGTAGTATCACTTAATTATT
36104 TACCAAGTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.48
Consensus pattern (27 bp):
TTAAAAGTAGTATCACTTAATTATTAA
Found at i:37550 original size:34 final size:34
Alignment explanation
Indices: 37507--37623 Score: 182
Period size: 34 Copynumber: 3.5 Consensus size: 34
37497 GTAAAAACCA
*
37507 CCATTTAATCAATAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
*
37541 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
* * *
37575 CCATTTAGTCAACAATGGTAAACTACCAAATC-A
1 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
37608 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
37624 TCTCCCACTT
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
33 15 0.20
34 61 0.80
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAAGCTACCAAATCTC
Found at i:41586 original size:19 final size:19
Alignment explanation
Indices: 41559--41621 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 19
41549 TCACGTGTAC
* *
41559 AGTAACCGTATACTTGAAT
1 AGTACCCGTATACGTGAAT
41578 AGTACCCGTATACGTGAAT
1 AGTACCCGTATACGTGAAT
**
41597 AGTACCTATATACGTGAAT
1 AGTACCCGTATACGTGAAT
41616 AGTACC
1 AGTACC
41622 TCGACAACCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTACCCGTATACGTGAAT
Found at i:41969 original size:34 final size:34
Alignment explanation
Indices: 41926--42042 Score: 182
Period size: 34 Copynumber: 3.5 Consensus size: 34
41916 GTAAAAACCA
*
41926 CCATTTAATCAATAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
*
41960 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
* * *
41994 CCATTTAGTCAACAATGGTAAACTACCAAATC-A
1 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
42027 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
42043 TTTCTCTATT
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
33 15 0.20
34 61 0.80
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAAGCTACCAAATCTC
Found at i:42928 original size:17 final size:17
Alignment explanation
Indices: 42906--42939 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
42896 CTTAAATCCA
42906 AAAGCTCATACCATATT
1 AAAGCTCATACCATATT
*
42923 AAAGCTCGTACCATATT
1 AAAGCTCATACCATATT
42940 CGAAGGACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (17 bp):
AAAGCTCATACCATATT
Found at i:43030 original size:19 final size:19
Alignment explanation
Indices: 42993--43054 Score: 83
Period size: 19 Copynumber: 3.3 Consensus size: 19
42983 CATGTATCAC
42993 TTAAATAAAAATATTAAATT
1 TTAAATAAAAATATTAAA-T
43013 TTAAA-AAATAAT-TTAAAT
1 TTAAATAAA-AATATTAAAT
*
43031 TTAAATAAAAATATTATAT
1 TTAAATAAAAATATTAAAT
43050 TTAAA
1 TTAAA
43055 AAATATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
18 9 0.24
19 21 0.55
20 8 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAAATAAAAATATTAAAT
Found at i:43068 original size:16 final size:16
Alignment explanation
Indices: 42999--43073 Score: 60
Period size: 16 Copynumber: 4.3 Consensus size: 16
42989 TCACTTAAAT
*
42999 AAAAATATTAAATTTTA
1 AAAAATATTATA-TTTA
*
43016 AAAAATAATTTAAATTTAAA
1 AAAAAT-A-TTATATTT--A
43036 TAAAAATATTATATTTA
1 -AAAAATATTATATTTA
* *
43053 AAAAATATTTTTTTTA
1 AAAAATATTATATTTA
43069 AAAAA
1 AAAAA
43074 ATGTTTAACA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 19 0.38
17 7 0.14
18 4 0.08
19 12 0.24
20 2 0.04
21 6 0.12
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAAATATTATATTTA
Found at i:43260 original size:29 final size:27
Alignment explanation
Indices: 43214--43281 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 27
43204 TTATTTATAT
*
43214 TTAAAAATTTAATAAAAATATATATAATTA
1 TTAAAAATTAAATAAAAA-ATA-AT-ATTA
*
43244 TTAAAAATTAAAT-AAAAATAATATTT
1 TTAAAAATTAAATAAAAAATAATATTA
*
43270 TTAAAAAATAAA
1 TTAAAAATTAAA
43282 GATAAAGCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 14 0.40
27 2 0.06
28 3 0.09
29 4 0.11
30 12 0.34
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
TTAAAAATTAAATAAAAAATAATATTA
Found at i:45376 original size:21 final size:21
Alignment explanation
Indices: 45328--45379 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
45318 AGTAGCATAT
* *
45328 TTTCATCCAACGAGTGCATCC
1 TTTCATTCAACGAGTGCATCA
45349 TTTCATTCAAC-AGATGCATCA
1 TTTCATTCAACGAG-TGCATCA
45370 TTTCATTCAA
1 TTTCATTCAA
45380 ATATATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.35
Consensus pattern (21 bp):
TTTCATTCAACGAGTGCATCA
Found at i:47620 original size:156 final size:155
Alignment explanation
Indices: 47011--47635 Score: 499
Period size: 156 Copynumber: 4.0 Consensus size: 155
47001 AAATGATTTT
* ** * *
47011 AAAATAATCATAGAAGGGTAAACCTATATTAAATGTACACCTTTGGCATAAAAGCATCCTGGTGA
1 AAAATAATCATAGAAGGGTGAACCTATACAAAATGTACACCTTTGGCATAAAAGCATCTTGATGA
* * * * * ** * * * *
47076 TTACATCAAATTCGAGTT-TATGGGAAATTGCCAAAATGCTTTTGATGACTATTTTTATTTTGAA
66 TTACATCAAACTCGA-TTCTAAGAGAAATTACCAAAATACCCTTAAGGACTATCTTCATTTTGAA
* *
47140 AGCATCTCGGTGAC-CTTAAAGGACTC
130 AGCATCTCGATGACTC-TAAAAGACTC
* * * * *** * * * *
47166 AAAAATAACCATAAAAAGGTGAACCTATTCAAAACACACACTTTTGGCATAAAAGCATCGTGCTA
1 -AAAATAATCATAGAAGGGTGAACCTATACAAAATGTACACCTTTGGCATAAAAGCATCTTGATG
** * ** * *
47231 ATTATTTCAAACTCGATTCT-AGAAAAAATTATAAAAATACCCTTAGGGATTATCTTCATTTTGA
65 ATTACATCAAACTCGATTCTAAG-AGAAATTACCAAAATACCCTTAAGGACTATCTTCATTTTGA
* *
47295 AAGCATATCGATGACTTTAAAAGACTC
129 AAGCATCTCGATGACTCTAAAAGACTC
* * * *
47322 GAAAATAATAATAGAAGGCTGAACCTATATAAAATG--CACCTTTGGCATAAAAGTATCTTGATG
1 -AAAATAATCATAGAAGGGTGAACCTATACAAAATGTACACCTTTGGCATAAAAGCATCTTGATG
* * * * * * * * * *
47385 ATTACATTAAACTTGATTTTAAAAGAAATTACCAAAATATCCGT-AGTGACTATTTTCGTCTTAA
65 ATTACATCAAACTCGATTCTAAGAGAAATTACCAAAATACCCTTAAG-GACTATCTTCATTTTGA
* *
47449 AAGCATCTTGATGACTCTAAATGACTC
129 AAGCATCTCGATGACTCTAAAAGACTC
* * **
47476 AAACATAATCACAGAAGGGTGAACCTATACAAAATGTACACCTTTGACATAAAAGCATC-CCAGT
1 AAA-ATAATCATAGAAGGGTGAACCTATACAAAATGTACACCTTTGGCATAAAAGCATCTTGA-T
* * ****
47540 GATTATATCAAACTCGATTCTAAGGGAAATTACCAAAATGTTTTTAAGGACTATCTTCATTTTGA
64 GATTACATCAAACTCGATTCTAAGAGAAATTACCAAAATACCCTTAAGGACTATCTTCATTTTGA
* * * * * *
47605 AACCATTTTGGTGACTCTAATAGACAC
129 AAGCATCTCGATGACTCTAAAAGACTC
47632 AAAA
1 AAAA
47636 ATGGTTAAAA
Statistics
Matches: 359, Mismatches: 100, Indels: 21
0.75 0.21 0.04
Matches are distributed among these distances:
153 4 0.01
154 116 0.32
155 6 0.02
156 231 0.64
157 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (155 bp):
AAAATAATCATAGAAGGGTGAACCTATACAAAATGTACACCTTTGGCATAAAAGCATCTTGATGA
TTACATCAAACTCGATTCTAAGAGAAATTACCAAAATACCCTTAAGGACTATCTTCATTTTGAAA
GCATCTCGATGACTCTAAAAGACTC
Found at i:52340 original size:96 final size:95
Alignment explanation
Indices: 52146--52402 Score: 300
Period size: 96 Copynumber: 2.7 Consensus size: 95
52136 TTTTCTAAGG
* *
52146 GATACTCCAACCTCATTTTTAAACTTGTTAAGATTTAAATCTTATTTTTGCTTAAATTATCATCA
1 GATACTCCAACC-CATTTTTAAACTTGTTAAGATTTAAATCTTATTTTTGCCTAAATTGTCATCA
52211 TCGGGGATACTCCAACCCATTCTCCCAAAAA
65 TCGGGGATACTCCAACCCATTCTCCCAAAAA
* * *
52242 GATACTCCAACTCCATTTTTAAACTTGTTAAAATTTAAATCTTATTTTTGCCTAAATTGTTATCG
1 GATACTCCAAC-CCATTTTTAAACTTGTTAAGATTTAAATCTTATTTTTGCCTAAATTGTCATCA
* * * *
52307 TCGGGGATACTCTAACCCCA-TCTTCCGAGAA
65 TCGGGGATACTCCAA-CCCATTCTCCCAAAAA
* * * * * * **
52338 GATATTCTAACCCTGTTTTTTTAAACTTATCAGGATTTAAATCTTATTTTCACCTAAATTGTCAT
1 GATACTCCAACCC---ATTTTTAAACTTGTTAAGATTTAAATCTTATTTTTGCCTAAATTGTCAT
52403 TGTCGAGAAC
Statistics
Matches: 137, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
95 2 0.01
96 89 0.65
97 5 0.04
98 41 0.30
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.39
Consensus pattern (95 bp):
GATACTCCAACCCATTTTTAAACTTGTTAAGATTTAAATCTTATTTTTGCCTAAATTGTCATCAT
CGGGGATACTCCAACCCATTCTCCCAAAAA
Found at i:55356 original size:2 final size:2
Alignment explanation
Indices: 55316--55346 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
55306 TGCTGCAAAG
*
55316 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
55347 AAAAATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:56750 original size:3 final size:3
Alignment explanation
Indices: 56742--56774 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
56732 GTCATTCATG
56742 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
56775 TAAAAACAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:62875 original size:20 final size:18
Alignment explanation
Indices: 62847--62892 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
62837 TAAGAATAAT
62847 TTTAAATTTTAATTATCATA
1 TTTAAATTTT-A-TATCATA
*
62867 TTTATATTTTATATCATA
1 TTTAAATTTTATATCATA
*
62885 TTTTAATT
1 TTTAAATT
62893 AAAATCATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 13 0.57
19 1 0.04
20 9 0.39
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTAAATTTTATATCATA
Found at i:64507 original size:16 final size:16
Alignment explanation
Indices: 64486--64552 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 16
64476 TATATTATAA
64486 TTATATTTTAAAAATT
1 TTATATTTTAAAAATT
*
64502 TTATATTTAAATAAATT
1 TTATATTTTAA-AAATT
* *
64519 TTAATATATTAATAATT
1 TT-ATATTTTAAAAATT
* *
64536 TT-TATTATATAAATT
1 TTATATTTTAAAAATT
64551 TT
1 TT
64553 TTAATTATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
15 11 0.27
16 10 0.24
17 13 0.32
18 7 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATATTTTAAAAATT
Found at i:64512 original size:15 final size:15
Alignment explanation
Indices: 64486--64552 Score: 55
Period size: 15 Copynumber: 4.1 Consensus size: 15
64476 TATATTATAA
64486 TTATATTTTAAAAATT
1 TTATA-TTTAAAAATT
64502 TTATATTTAAATAAATT
1 TTATATTT-AA-AAATT
*
64519 TTAATATATTAATAATT
1 TT-ATAT-TTAAAAATT
*
64536 TT-TATTATATAAATT
1 TTATATT-TAAAAATT
64551 TT
1 TT
64553 TTAATTATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
14 1 0.02
15 14 0.33
16 7 0.16
17 13 0.30
18 6 0.14
19 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATTTAAAAATT
Found at i:64532 original size:18 final size:18
Alignment explanation
Indices: 64488--64545 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
64478 TATTATAATT
*
64488 ATATTTTAA-AAATTTT-
1 ATATATTAATAAATTTTA
64504 ATAT-TTAAATAAATTTTA
1 ATATATT-AATAAATTTTA
*
64522 ATATATTAATAATTTTTA
1 ATATATTAATAAATTTTA
*
64540 TTATAT
1 ATATAT
64546 AAATTTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
15 2 0.06
16 6 0.17
17 7 0.19
18 19 0.53
19 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATATATTAATAAATTTTA
Found at i:66717 original size:2 final size:2
Alignment explanation
Indices: 66710--66745 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
66700 TCAAATTTCG
66710 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
66746 GCATTATGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:66860 original size:28 final size:29
Alignment explanation
Indices: 66829--66914 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 29
66819 TAAAATTAAA
*
66829 TTAATTTAATATATT-TTTTATTTTTTAT
1 TTAATTTAATATATTATTTTATTTATTAT
*
66857 TTAATTT-ATA-ATTATTTAATTTAATTAT
1 TTAATTTAATATATTATTTTATTT-ATTAT
* * *
66885 TAAATTTAATGATATTATTATATTTGTTAT
1 TTAATTTAAT-ATATTATTTTATTTATTAT
66915 ACATATAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 3 0.06
27 10 0.21
28 17 0.36
29 2 0.04
30 5 0.11
31 10 0.21
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (29 bp):
TTAATTTAATATATTATTTTATTTATTAT
Found at i:66883 original size:13 final size:13
Alignment explanation
Indices: 66853--66894 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
66843 TTTTTATTTT
66853 TTATTTAATTTATAA
1 TTATTTAA-TT-TAA
66868 TTATTTAATTTAA
1 TTATTTAATTTAA
*
66881 TTATTAAATTTAA
1 TTATTTAATTTAA
66894 T
1 T
66895 GATATTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 16 0.62
14 2 0.08
15 8 0.31
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTATTTAATTTAA
Found at i:70664 original size:21 final size:21
Alignment explanation
Indices: 70640--70681 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
70630 TTTTTAATAT
*
70640 TTATATTAT-AATACTATATAA
1 TTAT-TTATAAATAATATATAA
*
70661 TTATTTTTAAATAATATATAA
1 TTATTTATAAATAATATATAA
70682 ATATCAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTATTTATAAATAATATATAA
Found at i:71878 original size:20 final size:17
Alignment explanation
Indices: 71850--71893 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 17
71840 TATAATTAAA
71850 TTTAAATAAAATATATTAT
1 TTTAAAT-AAA-ATATTAT
71869 TTTAATATAAAATATTAT
1 TTTAA-ATAAAATATTAT
71887 TTTAAAT
1 TTTAAAT
71894 CAAACTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.08
18 12 0.50
19 8 0.33
20 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTAAATAAAATATTAT
Found at i:74859 original size:3 final size:3
Alignment explanation
Indices: 74853--74892 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
74843 ATTACTTTTT
74853 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
74893 CGTCTGTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Done.