genome.fa.s2388.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2388
Parameters: 2 7 7 80 10 50 1000
Length:  17008

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686--716	13	2.4	13	94	0	53	35	12	16	35	1.87
761--834	19	3.7	19	87	5	85	36	18	17	27	1.94
1601--1635	13	2.8	13	91	4	54	85	2	11	0	0.69
1598--1647	19	2.5	19	83	9	55	82	2	16	0	0.77
2749--3056	88	3.5	88	83	2	305	21	18	15	44	1.86
3325--3378	20	2.7	20	82	2	63	44	11	12	31	1.78
3348--3396	20	2.4	21	86	3	64	36	12	18	32	1.88
5672--5922	96	2.6	95	80	6	292	27	26	12	33	1.93
8127--8397	40	6.8	40	76	2	213	16	20	16	47	1.83
8127--8397	79	3.4	79	77	6	251	16	20	16	47	1.83
8345--8478	66	2.0	66	81	8	157	17	19	13	50	1.78
8562--8860	80	3.8	80	75	14	253	16	19	15	49	1.80
8730--8874	40	3.7	40	77	6	143	18	20	15	46	1.84
8566--8861	159	1.9	159	80	7	350	15	19	15	48	1.80
8765--8921	40	3.9	39	74	8	106	18	17	14	49	1.79
9042--9319	40	7.0	39	76	7	229	19	19	14	46	1.83
9061--9319	80	3.2	81	81	6	296	19	18	14	47	1.83
9333--9535	64	3.2	63	80	4	219	23	25	12	38	1.90
9327--9784	128	3.6	127	78	4	386	20	24	14	39	1.91
9354--9795	64	6.9	64	73	6	238	21	23	14	40	1.90
9327--9808	192	2.5	191	78	3	502	20	24	14	40	1.90
12749--13542	156	5.1	156	74	8	603	27	14	16	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12895--13653	312	2.4	310	83	3	916	26	14	16	42	1.87
13151--13667	155	3.3	157	73	8	446	27	15	16	41	1.88
15120--15171	24	2.2	25	86	6	72	57	0	0	42	0.98
15478--15525	20	2.4	20	79	6	53	45	8	4	41	1.53

Tables:   1

The End!