genome.fa.s239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold239
Parameters: 2 7 7 80 10 50 1000
Length:  152578

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3341--3367	13	2.1	13	100	0	54	29	14	14	40	1.86
3437--3474	20	1.9	20	94	0	67	31	10	18	39	1.85
3457--3515	13	5.0	13	76	19	67	35	13	15	35	1.87
3436--3538	33	3.1	33	91	2	163	34	12	16	35	1.87
3470--3535	20	3.7	20	67	26	65	37	13	15	33	1.86
7698--8319	328	1.9	329	98	0	1219	27	16	15	40	1.89
9342--9366	12	2.1	12	100	0	50	28	8	24	40	1.83
9416--9440	13	1.9	13	100	0	50	32	16	16	36	1.90
9451--9577	52	2.4	52	94	0	218	37	18	15	29	1.92
14608--14680	20	3.7	19	83	7	76	41	15	15	28	1.87
15361--15394	17	2.0	17	100	0	68	29	23	17	29	1.97
17044--17117	31	2.4	31	80	8	80	47	1	22	28	1.60
23468--23494	13	2.1	13	100	0	54	40	14	14	29	1.86
27306--27449	29	5.0	29	80	8	159	32	23	6	36	1.82
28626--28653	5	5.6	5	100	0	56	82	0	0	17	0.68
35685--35716	2	16.0	2	93	0	55	0	53	0	46	1.00
35912--36035	21	6.0	21	75	11	96	49	9	5	35	1.59
35958--36052	38	2.5	38	92	0	154	50	10	6	32	1.62
37969--38006	13	3.1	13	81	11	53	34	2	0	63	1.09
43609--43649	20	2.0	20	85	0	55	12	7	7	73	1.25
51105--51182	15	4.9	16	72	12	63	80	10	2	6	0.98
51096--51152	25	2.3	25	84	6	71	82	10	0	7	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51094--51182	11	8.7	9	70	23	52	79	12	2	5	0.99
53157--53193	12	2.9	12	88	11	56	54	16	0	29	1.43
53611--53709	34	2.8	37	77	12	98	42	11	14	32	1.80
53611--53721	36	3.1	36	79	8	120	41	11	16	30	1.84
54275--54318	21	2.1	21	91	0	70	40	31	2	25	1.68
55117--55163	20	2.3	20	88	0	67	38	12	12	36	1.82
55117--55170	20	2.7	20	82	5	65	38	12	12	35	1.82
67248--67708	43	9.9	43	71	15	249	32	16	25	25	1.96
67287--67761	52	9.8	51	72	15	357	32	17	25	24	1.96
67199--67806	95	6.4	95	73	13	410	33	16	24	24	1.96
67430--67748	147	2.2	147	90	0	503	32	16	25	25	1.96
67810--67970	32	5.0	32	83	4	200	23	16	28	31	1.96
67794--67970	64	2.8	63	84	5	223	24	15	29	29	1.96
68147--68213	28	2.4	28	82	7	75	26	17	26	28	1.98
70112--70152	21	2.0	21	90	4	66	51	17	9	21	1.74
85354--85407	13	4.2	13	79	9	65	85	12	1	0	0.69
86614--86757	41	3.7	40	75	10	143	22	25	13	39	1.90
86612--86792	77	2.4	75	82	3	218	23	24	12	39	1.90
86798--86910	43	2.7	41	75	12	97	21	27	8	42	1.82
86976--87092	31	3.8	31	73	3	101	27	27	26	18	1.98
86975--87097	62	2.0	62	83	3	158	27	26	26	20	1.99
87028--87603	149	3.8	149	83	3	672	32	24	22	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87450--87559	37	3.1	37	68	15	106	32	25	23	18	1.97
92832--93326	43	10.7	43	73	13	324	32	17	25	25	1.97
92832--93191	95	3.8	94	79	9	367	32	16	25	25	1.96
92860--93286	52	8.9	51	71	17	315	33	17	25	24	1.96
93093--93331	95	2.5	95	88	0	334	32	15	26	25	1.96
92997--93266	147	1.8	147	89	0	423	32	16	25	24	1.96
93335--93495	32	5.0	32	81	4	191	24	16	27	31	1.97
93670--93738	28	2.5	28	85	2	86	24	20	27	27	1.99
95639--95679	21	2.0	21	90	4	66	51	17	9	21	1.74
110793--110839	11	4.4	10	80	19	51	82	14	2	0	0.75
112043--112222	76	2.4	75	83	0	225	23	25	12	38	1.90
112043--112188	41	3.7	41	72	10	133	21	25	13	39	1.89
112161--112249	34	2.5	36	83	7	110	22	26	11	39	1.88
112406--112522	31	3.8	31	74	3	110	28	27	25	18	1.98
112405--112527	62	2.0	62	85	3	167	28	26	25	20	1.99
112458--112906	149	3.0	149	84	1	605	32	24	22	21	1.98
112794--112996	86	2.3	87	95	0	363	34	22	20	22	1.96
122292--122317	13	2.0	13	100	0	52	38	15	15	30	1.88
122341--122382	20	2.1	20	100	0	84	42	14	9	33	1.78
132154--132227	26	2.8	25	76	12	67	50	1	1	47	1.18
132950--133003	16	3.2	17	79	15	67	42	1	5	50	1.36
132952--133015	30	2.0	34	85	11	91	42	1	3	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134129--134184	24	2.3	26	84	9	73	42	1	1	53	1.21
141513--141575	33	1.9	33	83	6	83	36	17	9	36	1.82
141610--141665	19	2.9	19	81	2	76	39	16	14	30	1.88
146354--146387	11	2.9	12	91	8	61	73	0	0	26	0.83
146372--146436	31	2.1	31	83	8	80	67	9	3	20	1.32

Tables:   1

The End!