genome.fa.s2392.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2392
Parameters: 2 7 7 80 10 50 1000
Length:  27474

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1978--2008	4	7.8	4	100	0	62	77	0	0	22	0.77
3227--3305	33	2.4	33	91	0	131	37	13	18	29	1.90
3228--3293	20	3.7	19	69	26	63	37	13	18	30	1.89
3329--3362	13	2.6	13	95	0	59	38	17	14	29	1.90
12388--12813	189	2.2	189	85	4	590	41	14	12	32	1.82
13538--13642	54	1.9	56	86	5	151	60	14	16	8	1.57
14112--14194	35	2.3	36	84	12	109	6	16	7	69	1.31
14374--14435	29	2.1	29	87	0	88	9	17	22	50	1.75
14395--14471	29	2.6	28	87	4	100	11	22	15	50	1.76
14683--14713	5	6.2	5	92	0	53	41	16	22	19	1.89
14673--14713	10	4.3	10	87	9	50	43	14	21	19	1.87
14915--14952	3	13.3	3	83	10	53	31	0	2	65	1.06
15582--15780	43	4.6	42	76	7	152	18	25	14	41	1.88
15579--15767	87	2.2	85	85	4	256	15	26	13	44	1.83
15871--15951	31	2.6	31	74	0	81	29	34	23	12	1.91
16166--16246	31	2.6	31	77	11	85	30	33	20	14	1.93
15869--16466	149	4.0	150	80	5	559	30	26	23	19	1.98
17019--17151	59	2.3	59	83	0	167	45	15	14	24	1.84
20679--20803	52	2.4	52	95	0	223	28	17	18	36	1.94
20898--20922	13	1.9	13	100	0	50	32	16	16	36	1.90
20877--20942	32	2.0	33	88	2	98	39	13	12	34	1.82
24712--24743	7	4.6	7	92	0	55	81	0	0	18	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24712--24750	14	2.7	14	92	4	60	79	0	0	20	0.73
25262--25390	64	2.0	64	90	0	204	34	36	15	13	1.87
25320--25517	74	2.7	74	80	1	200	33	33	17	15	1.91

Tables:   1

The End!