Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2395
Parameters: 2 7 7 80 10 50 1000
Length:  84528

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12754--12804
20
2.4
21
80
9
59
37
1
1
58
1.20
13200--13224
2
12.5
2
100
0
50
48
0
0
52
1.00
14687--14732
19
2.3
18
85
14
56
39
0
0
60
0.97
14784--14934
81
1.9
80
90
1
239
52
5
3
38
1.40
16771--16796
12
2.2
12
100
0
52
50
0
0
50
1.00
21221--21309
44
2.0
45
97
2
171
30
17
26
24
1.98
24277--24409
38
3.5
38
73
12
105
29
12
16
42
1.84
24548--24608
25
2.4
25
83
5
70
26
6
13
54
1.63
25993--27125
300
3.7
306
93
3
1930
33
12
10
43
1.77
27105--27149
2
22.5
2
95
0
81
46
2
0
51
1.13
27569--27632
18
3.3
18
70
29
60
50
14
6
29
1.67
28827--28856
2
15.0
2
100
0
60
50
0
0
50
1.00
29684--29745
18
3.3
18
72
24
65
51
12
6
29
1.65
30985--31023
2
19.5
2
94
0
69
46
0
0
53
1.00
32656--32698
14
3.1
14
82
0
50
53
0
0
46
1.00
33021--33069
22
2.3
21
82
6
62
69
0
0
30
0.89
35941--35969
4
7.2
4
100
0
58
72
0
0
27
0.85
37407--37476
24
2.8
25
83
14
83
47
24
8
20
1.78
37409--37505
27
3.7
27
82
6
103
47
23
8
20
1.77
37493--37550
26
2.3
25
91
5
91
25
15
25
32
1.95
42003--42079
24
3.0
24
78
14
75
49
20
7
22
1.74
42005--42101
27
3.7
27
81
6
94
48
21
7
22
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42089--42146
26
2.3
25
88
5
82
27
15
24
32
1.95
46046--46241
97
2.0
98
85
3
261
39
4
11
45
1.59
46704--46737
2
17.0
2
100
0
68
50
0
0
50
1.00
50073--50105
17
1.9
17
93
0
57
12
9
12
66
1.44
55997--56035
20
2.0
20
84
0
51
61
5
0
33
1.18
59815--59859
3
15.0
3
100
0
90
33
0
0
66
0.92
66079--66197
37
3.2
37
80
0
139
38
20
17
23
1.93
69288--69430
37
3.8
37
79
11
150
33
20
18
27
1.96
69314--69476
74
2.2
75
81
8
183
32
17
21
28
1.96
74042--74090
19
2.6
19
87
6
64
57
0
0
42
0.99
75047--75131
6
13.7
6
84
9
100
51
15
16
16
1.76
75067--75140
24
3.0
24
84
5
87
54
17
14
13
1.72
84374--84415
21
2.0
21
100
0
84
23
19
14
42
1.87

Tables:   1

The End!