genome.fa.s2397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2397
Parameters: 2 7 7 80 10 50 1000
Length:  54049

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7488--7631	71	2.0	71	98	0	279	48	9	15	27	1.74
10090--10214	20	5.7	20	71	18	88	41	12	16	30	1.84
10947--11124	96	1.9	96	85	0	248	35	20	25	18	1.95
10947--11160	48	4.5	48	84	1	218	35	20	24	19	1.96
11218--12146	28	32.4	28	83	3	897	23	18	29	28	1.98
11488--11576	32	2.9	31	86	3	117	23	20	24	31	1.98
12318--12516	91	2.2	91	84	8	253	29	30	14	25	1.95
12318--12525	92	2.3	91	84	7	253	29	30	14	25	1.95
12693--12785	35	2.7	35	84	3	116	23	26	9	39	1.86
12761--12874	58	2.0	57	86	5	158	18	23	16	41	1.90
12874--13273	60	6.6	60	76	6	288	22	24	13	40	1.89
13276--15384	43	49.4	43	73	10	1209	18	26	16	39	1.91
14003--14385	191	2.0	190	82	6	463	17	25	15	42	1.88
14916--15386	163	2.9	160	79	6	437	19	26	15	38	1.92
15493--15534	17	2.5	17	80	7	50	19	16	4	59	1.54
16395--16773	166	2.3	166	88	2	532	28	10	9	51	1.68
17368--17403	19	2.0	17	89	10	54	69	0	30	0	0.89
19062--19487	156	2.7	154	80	3	417	23	14	22	39	1.91
20769--20804	12	3.0	12	92	8	56	2	22	8	66	1.31
26564--26615	20	2.6	19	85	8	68	34	13	11	40	1.81
35225--35266	3	14.0	3	94	0	75	33	30	2	33	1.71
36835--36894	21	2.9	21	82	9	79	33	13	13	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43688--43725	19	2.0	19	100	0	76	31	5	31	31	1.80
48368--48435	19	3.9	19	76	21	76	36	11	14	36	1.83
48389--48413	13	1.9	13	100	0	50	36	16	16	32	1.90
48475--48500	13	2.0	13	100	0	52	30	15	15	38	1.88
48455--48521	33	2.0	33	88	0	98	25	14	16	43	1.86
51030--51200	52	3.3	51	81	4	191	29	25	11	33	1.91
51133--51388	79	3.2	79	78	4	255	25	28	15	30	1.95

Tables:   1

The End!