Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold24
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3006277
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.30
Warning! 383161 characters in sequence are not A, C, G, or T
File 1 of 19
Found at i:2862 original size:22 final size:22
Alignment explanation
Indices: 2834--2888 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
2824 GGGACATGTT
2834 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
2856 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
2878 AAAAATGCATG
1 AAAAATGCATG
2889 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (22 bp):
AAAAATGCATGAAACATAATAA
Found at i:3843 original size:20 final size:20
Alignment explanation
Indices: 3796--3870 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
3786 AAAAAGACAT
*
3796 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
3815 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
3836 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
*
3856 AATGCATCGATACAT
1 AATGTATCGATACAT
3871 CAGGGTATGA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:3865 original size:40 final size:39
Alignment explanation
Indices: 3793--3870 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
3783 GGTAAAAAGA
* * *
3793 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATACATCGATACATT
* *
3832 CATACATGTATCGATATATTGAAAAATGCATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATACATCGATACAT
3871 CAGGGTATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATACATCGATACATT
Found at i:4526 original size:86 final size:86
Alignment explanation
Indices: 4366--5870 Score: 2109
Period size: 86 Copynumber: 17.5 Consensus size: 86
4356 GGGTTACCAT
* * * * *
4366 TGACTTGCATGGGCTTTAAAAGGGTGCCACTGACGTGCGTGGGCTTTG-AAAGAATGCCACTAAC
1 TGACTTG--TGGGCTTTGAAAGAGTGCCACTGAC-T-TGTGGGCTTTGAAAAGAGTGCCACTGAC
*
4430 TCGTGGGCTTTGAAAGGA-TGCCAC
62 TTGTGGGCTTTGAAAGGAGTGCCAC
*
4454 TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTACCACTGACTTGC
1 TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT--
* *
4518 GTGAGCTTTAAAAGGAGTGCCAC
64 GTGGGCTTTGAAAGGAGTGCCAC
* * *
4541 TGACTTGTGTGAGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGAATT
1 TGACTTGTG-G-GCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT
* * * *
4605 GTGGGCTTCGCAATG-GTGCCAT
64 GTGGGCTTTGAAAGGAGTGCCAC
* * * * *
4627 TGACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGTGGGCTCTG-AAAGGGTGCCACTAACTTGT
1 TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
*
4691 GGGCTTTGAAAGG-GTGCCAT
66 GGGCTTTGAAAGGAGTGCCAC
* *
4711 TGACTTGTGGGCTTTGAAAAGAGCGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
1 TGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
4776 TGGGCTTTGAAAGGAGTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
* * * * *
4798 TGACTTGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGTCTTTGAAAAGAGTGCTACTGATTTGT
1 TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
*
4863 GGGCTTTGAAAAGAGTGCCAC
66 GGGCTTTGAAAGGAGTGCCAC
* * *
4884 TGACTTGTGGACTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTG
1 TGACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
4948 TGGGCTTTGAAAGGAGTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
* * *
4970 TGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCTACTGACTTGT
1 TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
5035 GGGCTTTGAAAGG-GTGCCAC
66 GGGCTTTGAAAGGAGTGCCAC
* * *
5055 TGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGT
1 TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
*
5120 GGGCTTTGAAAAGAGTGCCAC
66 GGGCTTTGAAAGGAGTGCCAC
* * *
5141 TGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTG-AAAGGGTACCACTGACTTG
1 TGACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
*
5205 TGGGCTTTGAAAAGAGTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
*
5227 TGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
5292 TGGGCTTTGAAAGG-GTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
*
5313 TAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTG
1 TGACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
*
5377 TGGGCTTTGAAAAGAGTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
* * * *
5399 TGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTG-AAAGGGTACCACTAACTTG
1 TGACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
*
5463 TGAGCTTTGAAAGGAGTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
* *
5485 TGACTTGTGGGCTTTGAAA-AGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTA
1 TGACTTGTGGGCTTTGAAAGA-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
*
5549 TGGGCTTTGAAAAGAGTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
* * *
5571 TGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGAGTTG
1 TGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
5636 TGGGCTTTGAAAGG-GTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
*
5657 TGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
1 TGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
5722 TGGGCTTTGAAAGGAGTGCCAC
65 TGGGCTTTGAAAGGAGTGCCAC
* * *
5744 TGACTTGTGGG----AAAAG-GTGCCACTGACTTGT-GGCTTTG-AAAGGGTGTCACTGACTTGT
1 TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
*
5802 GGGCTTTGAAAAGAGTGCCAC
66 GGGCTTTGAAAGGAGTGCCAC
* *
5823 TGATTTGTGGGCTTTAAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TGACTTGTGGGCTTT-GAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
5871 GGGATGAACA
Statistics
Matches: 1285, Mismatches: 102, Indels: 61
0.89 0.07 0.04
Matches are distributed among these distances:
79 48 0.04
80 7 0.01
81 14 0.01
82 4 0.00
84 105 0.08
85 203 0.16
86 651 0.51
87 197 0.15
88 13 0.01
89 43 0.03
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.29
Consensus pattern (86 bp):
TGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
GGGCTTTGAAAGGAGTGCCAC
Found at i:4747 original size:29 final size:29
Alignment explanation
Indices: 4348--5870 Score: 2091
Period size: 29 Copynumber: 53.2 Consensus size: 29
4338 ACAGTGGTGA
* * *
4348 TTTGAAAAGGGTTACCATTGACTTGCATGGGC
1 TTTGAAAAGAG-TGCCACTGACTTG--TGGGC
* *
4380 TTT-AAAAGGGTGCCACTGACGTGCGTGGGC
1 TTTGAAAAGAGTGCCACTGAC-T-TGTGGGC
* * *
4410 TTTG-AAAGAATGCCACTAACTCGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
4438 TTTGAAAGGA-TGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
4466 TTTG-AAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
4494 TTTGAAAAG-GTACCACTGACTTGCGTGAGC
1 TTTGAAAAGAGTGCCACTGACTT--GTGGGC
4524 TTT-AAAAGGAGTGCCACTGACTTGTGTGAGC
1 TTTGAAAA-GAGTGCCACTGACTTGTG-G-GC
*
4555 TTT-AAAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
4583 TTTG-AAAGAGTGCCACTGAATTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* * * *
4611 TTCGCAATG-GTGCCATTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
4639 TTCG-AAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* * *
4667 TCTG-AAAGGGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
4695 TTTG-AAAGGGTGCCATTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
4723 TTTGAAAAGAGCGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
4752 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
4781 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* * *
4810 TTTG-AAAGGGTGCCATTGACTTGTGGTC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
4838 TTTGAAAAGAGTGCTACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
4867 TTTGAAAAGAGTGCCACTGACTTGTGGAC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
4896 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
4925 TTTG-AAAGGGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
4953 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
4982 TTTG-AAAGGGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5010 TTTGAAAAGAGTGCTACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5039 TTTG-AAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5067 TTTG-AAAGGGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5095 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5124 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5153 TTTGAAAGGAGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5182 TTTG-AAAGGGTACCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5210 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5239 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5268 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5297 TTTG-AAAGGGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5325 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5354 TTTGAAAAG-GTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5382 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5411 TTTGAAAGGAGTGCCACTAACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* * * *
5440 TTTG-AAAGGGTACCACTAACTTGTGAGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5468 TTTGAAAGGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5497 TTTGAAAAG-GTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5525 TTTGAAAAGAGTGCCACTAACTTATGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5554 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5583 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5612 TTTGAAAGGAGTGCCACTGAGTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5641 TTTG-AAAGGGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5669 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5698 TTTGAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5727 TTTGAAAGGAGTGCCACTGACTTGT-GG-
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5754 ---GAAAAG-GTGCCACTGACTTGT-GGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
5778 TTTG-AAAGGGTGTCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5806 TTTGAAAAGAGTGCCACTGATTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
*
5835 TTTAAAAAGAGTGCCACTGACTTGTGGGC
1 TTTGAAAAGAGTGCCACTGACTTGTGGGC
5864 TTTGAAA
1 TTTGAAA
5871 GGGATGAACA
Statistics
Matches: 1338, Mismatches: 120, Indels: 69
0.88 0.08 0.05
Matches are distributed among these distances:
23 17 0.01
24 5 0.00
26 4 0.00
27 22 0.02
28 478 0.36
29 724 0.54
30 55 0.04
31 29 0.02
32 4 0.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TTTGAAAAGAGTGCCACTGACTTGTGGGC
Found at i:4818 original size:115 final size:115
Alignment explanation
Indices: 4348--5870 Score: 2113
Period size: 115 Copynumber: 13.3 Consensus size: 115
4338 ACAGTGGTGA
* * * *
4348 TTTGAAAAGGGTTACCATTGACTTGCATGGGCTTT-AAAAGGGTGCCACTGACGTGCGTGGGCTT
1 TTTG-AAAGGG-TGCCACTGACTTG--TGGGCTTTGAAAAGAGTGCCACTGAC-T-TGTGGGCTT
* * *
4412 TG-AAAGAATGCCACTAACTCGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGC
60 TGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* * *
4466 TTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTACCACTGACTTGCGTGAGCTTT-AA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT--GTGGGCTTTGAA
*
4529 AAGGAGTGCCACTGACTTGTGTGAGCTTTAAAAGG-GTGCCACTGACTTGTGGGC
64 AA-GAGTGCCACTGACTTGTG-G-GCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* * * * * * *
4583 TTTGAAAGAGTGCCACTGAATTGTGGGCTTCGCAATG-GTGCCATTGACTTGTGGGCTTCG-AAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
* * *
4646 GGGTGCCACTGACTTGTGGGCTCTGAAAGG-GTGCCACTAACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* * *
4695 TTTGAAAGGGTGCCATTGACTTGTGGGCTTTGAAAAGAGCGCCACTGATTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
4760 GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* * * *
4810 TTTGAAAGGGTGCCATTGACTTGTGGTCTTTGAAAAGAGTGCTACTGATTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
*
4875 GAGTGCCACTGACTTGTGGACTTTGAAAGGAGTGCCACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* *
4925 TTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTG-AAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
* * * *
4989 GGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCTACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* *
5039 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
* *
5103 GAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* * *
5153 TTTGAAAGGAGTGCCACTAACTTGTGGGCTTTG-AAAGGGTACCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
5217 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* *
5268 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* *
5332 GGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* * *
5382 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTG-AA
1 TTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* * * *
5446 AGGGTACCACTAACTTGTGAGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* * *
5497 TTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTATGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
* *
5562 GAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
66 GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* *
5612 TTTGAAAGGAGTGCCACTGAGTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* *
5676 AGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
5727 TTTGAAAGGAGTGCCACTGACTTGT-GG----GAAAAG-GTGCCACTGACTTGT-GGCTTTG-AA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* * * *
5784 AGGGTGTCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGC
65 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
* *
5835 TTTAAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTT-GAAAGGGTGCCACTGACTTGTGGGCTTTGAAA
5871 GGGATGAACA
Statistics
Matches: 1280, Mismatches: 99, Indels: 57
0.89 0.07 0.04
Matches are distributed among these distances:
108 67 0.05
109 13 0.01
110 16 0.01
111 4 0.00
112 58 0.05
113 50 0.04
114 342 0.27
115 615 0.48
116 34 0.03
117 77 0.06
118 4 0.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.29
Consensus pattern (115 bp):
TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
GAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
Found at i:7113 original size:21 final size:19
Alignment explanation
Indices: 7089--7160 Score: 58
Period size: 19 Copynumber: 3.7 Consensus size: 19
7079 ATCTAGACCC
7089 TTCTATTTTTTTTGCTATTTT
1 TTCTATTTTTTTTG-T-TTTT
*
7110 TTCTTTTTTTTTTGTTTTT
1 TTCTATTTTTTTTGTTTTT
*
7129 TTGT-TTTGTTGTTT-TTTTT
1 TTCTATTT-TT-TTTGTTTTT
* *
7148 TTGTGTTTTTTTT
1 TTCTATTTTTTTT
7161 TGGGTGTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
18 6 0.13
19 20 0.43
20 7 0.15
21 13 0.28
ACGTcount: A:0.03, C:0.04, G:0.10, T:0.83
Consensus pattern (19 bp):
TTCTATTTTTTTTGTTTTT
Found at i:7122 original size:13 final size:13
Alignment explanation
Indices: 7113--7161 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 13
7103 CTATTTTTTC
7113 TTTTTTTTTTGTT
1 TTTTTTTTTTGTT
*
7126 TTTTTGTTTTGTT
1 TTTTTTTTTTGTT
*
7139 GTTTTTTTTTTGTG
1 -TTTTTTTTTTGTT
7153 TTTTTTTTT
1 TTTTTTTTT
7162 GGGTGTAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
13 21 0.66
14 11 0.34
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (13 bp):
TTTTTTTTTTGTT
Found at i:7127 original size:16 final size:15
Alignment explanation
Indices: 7113--7161 Score: 68
Period size: 14 Copynumber: 3.4 Consensus size: 15
7103 CTATTTTTTC
7113 TTTTTTTT-TTGTTT
1 TTTTTTTTGTTGTTT
7127 TTTTGTTTTGTTG-TT
1 TTTT-TTTTGTTGTTT
7142 TTTTTTTTG-TGTTT
1 TTTTTTTTGTTGTTT
7156 TTTTTT
1 TTTTTT
7162 GGGTGTAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.06
14 17 0.53
15 10 0.31
16 3 0.09
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (15 bp):
TTTTTTTTGTTGTTT
Found at i:7129 original size:29 final size:27
Alignment explanation
Indices: 7095--7162 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
7085 ACCCTTCTAT
*
7095 TTTTTTTGCTATTTTTTCTTTTTTTTTTG
1 TTTTTTTG-T-TTTGTTCTTTTTTTTTTG
*
7124 TTTTTTTGTTTTGTTGTTTTTTTTTTG
1 TTTTTTTGTTTTGTTCTTTTTTTTTTG
*
7151 TGTTTTT-TTTTG
1 TTTTTTTGTTTTG
7163 GGTGTAAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.14
27 22 0.61
28 1 0.03
29 8 0.22
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.84
Consensus pattern (27 bp):
TTTTTTTGTTTTGTTCTTTTTTTTTTG
Found at i:20240 original size:22 final size:22
Alignment explanation
Indices: 20212--20267 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
20202 TGGACATGTT
20212 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
20234 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
20256 AAAAATGCATGA
1 AAAAATGCATGA
20268 TCAAAGGCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (22 bp):
AAAAATGCATGAAACATAATAA
Found at i:21224 original size:20 final size:20
Alignment explanation
Indices: 21177--21251 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
21167 AAAAAGACAT
*
21177 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
21196 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
21217 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
21237 AATGTATCGATACAT
1 AATGTATCGATACAT
21252 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:21245 original size:40 final size:39
Alignment explanation
Indices: 21174--21251 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
21164 GGTAAAAAGA
* *
21174 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
21213 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
21252 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:23993 original size:58 final size:57
Alignment explanation
Indices: 23880--24003 Score: 144
Period size: 58 Copynumber: 2.2 Consensus size: 57
23870 TCATTGCAAC
* * *
23880 AAAAATTTTAAATTTTAAATATTTATCTTATTTGATTTGATTTAGACTTAATTATAA
1 AAAAATTTTAAATTTTAAAAATTAATCTTATTTGATTTGATTTACACTTAATTATAA
* * * *
23937 AAAGAATTTTAAATTTTAAAAAGTTAATTTTATTTGTTTTAGATTT-CA-TTAGTTATAT
1 AAA-AATTTTAAATTTTAAAAA-TTAATCTTATTTGATTT-GATTTACACTTAATTATAA
23995 AAAAATTTT
1 AAAAATTTT
24004 TTTAGATTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
57 9 0.16
58 28 0.49
59 15 0.26
60 5 0.09
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.51
Consensus pattern (57 bp):
AAAAATTTTAAATTTTAAAAATTAATCTTATTTGATTTGATTTACACTTAATTATAA
Found at i:24026 original size:84 final size:84
Alignment explanation
Indices: 23920--24090 Score: 254
Period size: 84 Copynumber: 2.0 Consensus size: 84
23910 TTTGATTTGA
*
23920 TTTAGACTTAATTATAAAAAGAATTTTAAATTTTAAAAAGTTAAT-TTTATTTGTTTTAGATTTC
1 TTTAGACTTAATTATAAAAAGAATTTTAAACTTTAAAAAGTTAATCTTT-TTTGTTTTAGATTTC
*
23984 ATTAGTTATATAAAAATTTT
65 ATTAATTATATAAAAATTTT
* * * *
24004 TTTAGATTTAATTATAATAAGAATTTTAAACTTTAAAACGTTAATCTTTTTTGTTTTAGATTTCT
1 TTTAGACTTAATTATAAAAAGAATTTTAAACTTTAAAAAGTTAATCTTTTTTGTTTTAGATTTCA
* *
24069 TTAATTATATAGAGATTTT
66 TTAATTATATAAAAATTTT
24088 TTT
1 TTT
24091 TAAATTCAAA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
84 75 0.96
85 3 0.04
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.52
Consensus pattern (84 bp):
TTTAGACTTAATTATAAAAAGAATTTTAAACTTTAAAAAGTTAATCTTTTTTGTTTTAGATTTCA
TTAATTATATAAAAATTTT
Found at i:24030 original size:26 final size:29
Alignment explanation
Indices: 23968--24030 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
23958 AGTTAATTTT
*
23968 ATTTGTTTTAGATTTCATTAGTTATATAAAA
1 ATTT-TTTTAGATTTAATTAG-TATATAAAA
*
23999 ATTTTTTTAGATTTAATTA-TA-ATAAGA
1 ATTTTTTTAGATTTAATTAGTATATAAAA
24026 ATTTT
1 ATTTT
24031 AAACTTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 10 0.33
28 2 0.07
30 14 0.47
31 4 0.13
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (29 bp):
ATTTTTTTAGATTTAATTAGTATATAAAA
Found at i:24691 original size:18 final size:18
Alignment explanation
Indices: 24664--24700 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24654 CGTCAAGTCG
* *
24664 AGCTTGGGCTTGGGCTTA
1 AGCTTAGGCTTCGGCTTA
24682 AGCTTAGGCTTCGGCTTA
1 AGCTTAGGCTTCGGCTTA
24700 A
1 A
24701 AGGTAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.19, G:0.32, T:0.32
Consensus pattern (18 bp):
AGCTTAGGCTTCGGCTTA
Found at i:29647 original size:20 final size:19
Alignment explanation
Indices: 29622--29678 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 19
29612 ATTGAATATA
29622 TATTAAATATTATACTATTT
1 TATTAAATATTATA-TATTT
*
29642 TATTAAATA-CATAT-TTT
1 TATTAAATATTATATATTT
*
29659 TATTATATATT-TATTATTT
1 TATTAAATATTATA-TATTT
29678 T
1 T
29679 TAATATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 13 0.42
18 2 0.06
19 7 0.23
20 9 0.29
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTAAATATTATATATTT
Found at i:29673 original size:17 final size:16
Alignment explanation
Indices: 29639--29728 Score: 50
Period size: 17 Copynumber: 5.6 Consensus size: 16
29629 TATTATACTA
**
29639 TTTTATTAAATACATAT
1 TTTTATT-AATATTTAT
29656 TTTTATTATATATTTAT
1 TTTTATTA-ATATTTAT
29673 TATTT-TTAATATTTA-
1 T-TTTATTAATATTTAT
29688 ----ATTAATATTATAT
1 TTTTATTAATATT-TAT
29701 TTTT-TTAATATTTAAAT
1 TTTTATTAATATTT--AT
29718 TTTTAATTAAT
1 TTTT-ATTAAT
29729 TAATTAATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
11 8 0.14
12 2 0.03
15 1 0.02
16 16 0.28
17 23 0.40
18 3 0.05
19 5 0.09
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTATTAATATTTAT
Found at i:29686 original size:16 final size:15
Alignment explanation
Indices: 29665--29724 Score: 56
Period size: 16 Copynumber: 4.1 Consensus size: 15
29655 TTTTTATTAT
29665 ATATTTATTATTTTTA
1 ATATTTA-TATTTTTA
29681 ATATTTA-A---TTA
1 ATATTTATATTTTTA
*
29692 ATATTATATTTTTTTA
1 ATATT-TATATTTTTA
*
29708 ATATTTAAATTTTTA
1 ATATTTATATTTTTA
29723 AT
1 AT
29725 TAATTAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
11 8 0.22
12 2 0.06
14 1 0.03
15 10 0.28
16 15 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATATTTATATTTTTA
Found at i:29696 original size:20 final size:20
Alignment explanation
Indices: 29652--29696 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
29642 TATTAAATAC
* *
29652 ATATTTTTATTATATATTTA
1 ATATTTTTAATATATAATTA
* *
29672 TTATTTTTAATATTTAATTA
1 ATATTTTTAATATATAATTA
29692 ATATT
1 ATATT
29697 ATATTTTTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
ATATTTTTAATATATAATTA
Found at i:29715 original size:27 final size:28
Alignment explanation
Indices: 29660--29715 Score: 89
Period size: 27 Copynumber: 2.0 Consensus size: 28
29650 ACATATTTTT
29660 ATTATATATTTATTATTTTTAATATTTA
1 ATTATATATTTATTATTTTTAATATTTA
29688 ATTA-ATATTATATT-TTTTTAATATTTA
1 ATTATATATT-TATTATTTTTAATATTTA
29715 A
1 A
29716 ATTTTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
ATTATATATTTATTATTTTTAATATTTA
Found at i:29732 original size:43 final size:45
Alignment explanation
Indices: 29652--29736 Score: 122
Period size: 43 Copynumber: 1.9 Consensus size: 45
29642 TATTAAATAC
* *
29652 ATATTTTTATTATATATTTATTATTTTTAATATTTAATTAATATT
1 ATATTTTTATTATATATTTATAATTTTTAATAATTAATTAATATT
29697 ATATTTTT-TTA-ATATTTA-AATTTTTAATTAATTAATTAAT
1 ATATTTTTATTATATATTTATAATTTTTAA-TAATTAATTAAT
29737 TAAATTAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 8 0.22
43 18 0.49
44 3 0.08
45 8 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (45 bp):
ATATTTTTATTATATATTTATAATTTTTAATAATTAATTAATATT
Found at i:30232 original size:28 final size:29
Alignment explanation
Indices: 30172--30236 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
30162 TTTGATTTAA
* **
30172 ATTATTATTTAATAATAAAAAATTATTTT
1 ATTAATATTTAATAATAAAAAATTATAAT
* *
30201 ATTAATATTTAATTATAAAATA-TATAAT
1 ATTAATATTTAATAATAAAAAATTATAAT
30229 ATTAATAT
1 ATTAATAT
30237 AAAATAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
ATTAATATTTAATAATAAAAAATTATAAT
Found at i:30239 original size:20 final size:22
Alignment explanation
Indices: 30203--30242 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
30193 ATTATTTTAT
30203 TAATATTTAATTATAAAATATA
1 TAATATTTAATTATAAAATATA
30225 TAATA-TTAA-TATAAAATA
1 TAATATTTAATTATAAAATA
30243 AAATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 4 0.22
22 5 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAATATTTAATTATAAAATATA
Found at i:30264 original size:18 final size:18
Alignment explanation
Indices: 30208--30263 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
30198 TTTATTAATA
30208 TTTAATTATAAAATATATAAT
1 TTTAA-TATAAAATA-A-AAT
*
30229 ATTAATATAAAATAAAAT
1 TTTAATATAAAATAAAAT
*
30247 TTTAATAATATAATAAA
1 TTTAAT-ATAAAATAAA
30264 TAGTAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 8 0.26
19 10 0.32
20 9 0.29
21 4 0.13
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TTTAATATAAAATAAAAT
Found at i:30274 original size:31 final size:31
Alignment explanation
Indices: 30222--30282 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 31
30212 ATTATAAAAT
30222 ATATAATATTAATATAAAATAAAATTTTAATA
1 ATATAATA-TAATATAAAATAAAATTTTAATA
*
30254 ATATAATA-AATAGTAAAATAAATTTTTAA
1 ATATAATATAATA-TAAAATAAAATTTTAA
30283 GTTAGTTCGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 4 0.15
31 15 0.56
32 8 0.30
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (31 bp):
ATATAATATAATATAAAATAAAATTTTAATA
Found at i:30796 original size:9 final size:9
Alignment explanation
Indices: 30782--30862 Score: 81
Period size: 9 Copynumber: 8.7 Consensus size: 9
30772 AATGATGCAC
30782 TGGTGGAGG
1 TGGTGGAGG
30791 TGGTGGAGG
1 TGGTGGAGG
*
30800 TGGTGGCGGCGG
1 TGGT---GGAGG
* *
30812 TGGCGGTGG
1 TGGTGGAGG
*
30821 TGGTGGCGG
1 TGGTGGAGG
30830 TGGTGGAGG
1 TGGTGGAGG
*
30839 TGGTGGCGG
1 TGGTGGAGG
30848 TGGTGGAGG
1 TGGTGGAGG
*
30857 CGGTGG
1 TGGTGG
30863 TGGACTTCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
9 53 0.88
12 7 0.12
ACGTcount: A:0.05, C:0.07, G:0.67, T:0.21
Consensus pattern (9 bp):
TGGTGGAGG
Found at i:30805 original size:18 final size:18
Alignment explanation
Indices: 30782--30862 Score: 99
Period size: 18 Copynumber: 4.3 Consensus size: 18
30772 AATGATGCAC
*
30782 TGGTGGAGGTGGTGGAGG
1 TGGTGGCGGTGGTGGAGG
* *
30800 TGGTGGCGGCGGTGGCGGTGG
1 TGGT---GGCGGTGGTGGAGG
30821 TGGTGGCGGTGGTGGAGG
1 TGGTGGCGGTGGTGGAGG
30839 TGGTGGCGGTGGTGGAGG
1 TGGTGGCGGTGGTGGAGG
*
30857 CGGTGG
1 TGGTGG
30863 TGGACTTCTA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
18 39 0.72
21 15 0.28
ACGTcount: A:0.05, C:0.07, G:0.67, T:0.21
Consensus pattern (18 bp):
TGGTGGCGGTGGTGGAGG
Found at i:30866 original size:12 final size:12
Alignment explanation
Indices: 30789--30865 Score: 82
Period size: 12 Copynumber: 6.4 Consensus size: 12
30779 CACTGGTGGA
*
30789 GGTGGTGGAGGT
1 GGTGGTGGCGGT
*
30801 GGTGGCGGCGGT
1 GGTGGTGGCGGT
* *
30813 GGCGGTGGTGGT
1 GGTGGTGGCGGT
* * *
30825 GGCGGTGGTGGA
1 GGTGGTGGCGGT
30837 GGTGGTGGCGGT
1 GGTGGTGGCGGT
*
30849 GGTGGAGGCGGT
1 GGTGGTGGCGGT
30861 GGTGG
1 GGTGG
30866 ACTTCTAGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 55 1.00
ACGTcount: A:0.04, C:0.08, G:0.68, T:0.21
Consensus pattern (12 bp):
GGTGGTGGCGGT
Found at i:34430 original size:31 final size:29
Alignment explanation
Indices: 34363--34463 Score: 111
Period size: 30 Copynumber: 3.5 Consensus size: 29
34353 AACTTATTAG
* *
34363 AATTTTTT-AA-TTTTATATATTTTTAAT
1 AATTTTTTGAATTTTTAGATATTTTTTAT
*
34390 AATGTTTTGAATTTTCTAGATATTTTTTAT
1 AATTTTTTGAATTTT-TAGATATTTTTTAT
34420 AATTTGTTTGAATTGTTTAGAT-TTTTTT-T
1 AATTT-TTTGAATT-TTTAGATATTTTTTAT
34449 AATTTTTTTGAATTT
1 AA-TTTTTTGAATTT
34464 AAAAATAATT
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
27 7 0.11
28 3 0.05
29 14 0.22
30 25 0.39
31 13 0.20
32 2 0.03
ACGTcount: A:0.27, C:0.01, G:0.08, T:0.64
Consensus pattern (29 bp):
AATTTTTTGAATTTTTAGATATTTTTTAT
Found at i:35099 original size:37 final size:38
Alignment explanation
Indices: 35012--35099 Score: 101
Period size: 36 Copynumber: 2.4 Consensus size: 38
35002 TTTTTATATT
* **
35012 AATATTTTAAA-AAATATACATATTTGATATATATTTA
1 AATATTTTAAATAAATATACATATTTGAAATATATAAA
* * *
35049 AATA-TTTACATAAATATA-ATTTTTTAAATATATAAA
1 AATATTTTAAATAAATATACATATTTGAAATATATAAA
35085 AATATTTTAAATAAA
1 AATATTTTAAATAAA
35100 ATTAAATATA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
36 22 0.52
37 20 0.48
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (38 bp):
AATATTTTAAATAAATATACATATTTGAAATATATAAA
Found at i:35122 original size:20 final size:19
Alignment explanation
Indices: 35031--35122 Score: 59
Period size: 19 Copynumber: 4.9 Consensus size: 19
35021 AAAAATATAC
* *
35031 ATATTTGATATATATTTAA
1 ATATTTTATATATAATTAA
*
35050 ATA-TTTACATA-AA-TATA
1 ATATTTTATATATAATTA-A
*
35067 ATTTTTTAAATATATAA--AA
1 ATATTTT--ATATATAATTAA
* *
35086 ATATTTTAAATAAAATTAA
1 ATATTTTATATATAATTAA
35105 ATATATTTATATATAATT
1 ATAT-TTTATATATAATT
35123 TTTATCTTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
16 2 0.04
17 10 0.18
18 9 0.16
19 16 0.29
20 16 0.29
21 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (19 bp):
ATATTTTATATATAATTAA
Found at i:35593 original size:13 final size:12
Alignment explanation
Indices: 35537--35619 Score: 64
Period size: 12 Copynumber: 6.8 Consensus size: 12
35527 TGAAATGTAA
*
35537 TATTATAATATT
1 TATTATTATATT
* *
35549 TATTATTTTATAA
1 TATTATTATAT-T
35562 TATTAATT-TATTT
1 TATT-ATTATA-TT
35575 TATTATTAATATT
1 TATTATT-ATATT
35588 TATTA-TA-ATT
1 TATTATTATATT
*
35598 AATTATTATATT
1 TATTATTATATT
*
35610 TATAATTATA
1 TATTATTATA
35620 ATAAATATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
10 7 0.12
11 3 0.05
12 24 0.42
13 17 0.30
14 6 0.11
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTATTATATT
Found at i:35609 original size:28 final size:28
Alignment explanation
Indices: 35565--35623 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
35555 TTTATAATAT
* * *
35565 TAATTTATTTTATTATTAATATTTATTA
1 TAATTAATTTTATTATTAATAATTATAA
*
35593 TAATTAATTATTA-TATTTATAATTATAA
1 TAATTAATT-TTATTATTAATAATTATAA
35621 TAA
1 TAA
35624 ATATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
TAATTAATTTTATTATTAATAATTATAA
Found at i:35727 original size:2 final size:2
Alignment explanation
Indices: 35715--35765 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
35705 TTTCTTTCTT
*
35715 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
35757 TA TA TA TA T
1 TA TA TA TA T
35766 CCTTCTCCTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:36081 original size:22 final size:20
Alignment explanation
Indices: 36040--36082 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
36030 ATTAAATTAA
* *
36040 ATTTATTTATTTAAATTATT
1 ATTTATTTATTAAAAATATT
36060 ATTTATTACTATTAAAAATATT
1 ATTTATT--TATTAAAAATATT
36082 A
1 A
36083 AAAAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTATTTATTAAAAATATT
Found at i:36262 original size:18 final size:20
Alignment explanation
Indices: 36223--36262 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
36213 AAATACACGT
*
36223 TAAATTTATTTTCAATTGAA
1 TAAATTTATTTTCAATTAAA
36243 TAAATTT-TTTTC-ATTAAA
1 TAAATTTATTTTCAATTAAA
36261 TA
1 TA
36263 TTTCATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 5 0.26
20 7 0.37
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.53
Consensus pattern (20 bp):
TAAATTTATTTTCAATTAAA
Found at i:37520 original size:14 final size:13
Alignment explanation
Indices: 37493--37538 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
37483 ATTTTTTTAA
*
37493 TTTTGTAAATATAT
1 TTTTTTAAA-ATAT
37507 TTTTTATAAAATA-
1 TTTTT-TAAAATAT
37520 TTTTTTAAAATAT
1 TTTTTTAAAATAT
37533 TTTTTT
1 TTTTTT
37539 TATGAATGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 7 0.24
13 11 0.38
14 7 0.24
15 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (13 bp):
TTTTTTAAAATAT
Found at i:37528 original size:12 final size:12
Alignment explanation
Indices: 37492--37537 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
37482 AATTTTTTTA
*
37492 ATTTTGTAAATAT
1 ATTTTTTAAA-AT
37505 ATTTTTTATAAAAT
1 A-TTTTT-TAAAAT
37519 ATTTTTTAAAAT
1 ATTTTTTAAAAT
37531 ATTTTTT
1 ATTTTTT
37538 TTATGAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 13 0.43
13 6 0.20
14 7 0.23
15 4 0.13
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (12 bp):
ATTTTTTAAAAT
Found at i:42101 original size:21 final size:21
Alignment explanation
Indices: 42083--42136 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
42073 TTATTTTACT
42083 TTTTTAATAA-AAAATTTTAAA
1 TTTTTAA-AATAAAATTTTAAA
42104 TTTTTAAAATAAAATTTTATATA
1 TTTTTAAAATAAAATTTTA-A-A
*
42127 ATTTTAAAAT
1 TTTTTAAAAT
42137 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 2 0.07
21 16 0.55
22 1 0.03
23 10 0.34
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTTAAAATAAAATTTTAAA
Found at i:46912 original size:18 final size:18
Alignment explanation
Indices: 46879--46916 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
46869 AATTTTGATA
46879 ATTTAATATTTGTATTAT
1 ATTTAATATTTGTATTAT
46897 ATTTATATATTT-TATTAT
1 ATTTA-ATATTTGTATTAT
46915 AT
1 AT
46917 AATAATTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTTAATATTTGTATTAT
Found at i:46987 original size:16 final size:17
Alignment explanation
Indices: 46935--46988 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 17
46925 GATTTAAAAT
*
46935 ATTTTATATTTATATAA
1 ATTTTATACTTATATAA
*
46952 ATTTTA-ACTCAT-TAA
1 ATTTTATACTTATATAA
46967 TATTTTATA-TTATATAA
1 -ATTTTATACTTATATAA
46984 ATTTT
1 ATTTT
46989 TAAATATACA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 3 0.10
16 18 0.58
17 10 0.32
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATACTTATATAA
Found at i:47002 original size:32 final size:32
Alignment explanation
Indices: 46932--47009 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 32
46922 TTAGATTTAA
*
46932 AATATTTTATATTTATATAAATTTTAACTCATT
1 AATATTTTATA-TTATATAAATTTTAAATCATT
46965 AATATTTTATATTATATAAATTTTTAAAT-A-T
1 AATATTTTATATTATATAAA-TTTTAAATCATT
46996 ACATATTTTA-ATTA
1 A-ATATTTTATATTA
47010 CTTTATATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
31 6 0.14
32 18 0.43
33 18 0.43
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (32 bp):
AATATTTTATATTATATAAATTTTAAATCATT
Found at i:47242 original size:21 final size:21
Alignment explanation
Indices: 47218--47257 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
47208 ATATTTATAT
*
47218 TTAAATATATATAAATAAATA
1 TTAAATATAAATAAATAAATA
*
47239 TTAAATATAAATAATTAAA
1 TTAAATATAAATAAATAAA
47258 AATAAAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAATATAAATAAATAAATA
Found at i:47255 original size:14 final size:13
Alignment explanation
Indices: 47219--47263 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
47209 TATTTATATT
*
47219 TAAATATATATAAA
1 TAAATAT-TAAAAA
*
47233 TAAATATTAAATA
1 TAAATATTAAAAA
47246 TAAATAATTAAAAA
1 TAAAT-ATTAAAAA
47260 TAAA
1 TAAA
47264 AAAGTTCAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAATATTAAAAA
Found at i:47825 original size:16 final size:16
Alignment explanation
Indices: 47804--47871 Score: 54
Period size: 16 Copynumber: 4.2 Consensus size: 16
47794 AGTAAAACCA
47804 AAATAATAAAATATTT
1 AAATAATAAAATATTT
*
47820 AAATAA-AAAATAATAT
1 AAATAATAAAAT-ATTT
47836 AAAT-AT--AATATTT
1 AAATAATAAAATATTT
*
47849 ATAATATATTAAAATATTA
1 A-AATA-A-TAAAATATTT
47868 AAAT
1 AAAT
47872 TTATATGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 6 0.15
16 14 0.34
17 1 0.02
18 3 0.07
19 7 0.17
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATAATAAAATATTT
Found at i:48403 original size:12 final size:12
Alignment explanation
Indices: 48377--48420 Score: 54
Period size: 11 Copynumber: 3.6 Consensus size: 12
48367 TATTCAATGA
48377 TAAATTTAA-TT
1 TAAATTTAATTT
48388 TAAATTTAATTT
1 TAAATTTAATTT
*
48400 TAAATATAATATTT
1 TAAAT-TTA-ATTT
48414 TAAATTT
1 TAAATTT
48421 TAAAATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 9 0.32
12 7 0.25
13 3 0.11
14 9 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TAAATTTAATTT
Found at i:48435 original size:27 final size:26
Alignment explanation
Indices: 48386--48436 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
48376 ATAAATTTAA
*
48386 TTTAAATTTAATTTTAAATATAATAT
1 TTTAAATTTAAATTTAAATATAATAT
48412 TTTAAATTTTAAAATTTAAA-ATAAT
1 TTTAAA-TTT-AAATTTAAATATAAT
48437 TTAATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 6 0.27
27 8 0.36
28 8 0.36
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TTTAAATTTAAATTTAAATATAATAT
Found at i:48503 original size:8 final size:8
Alignment explanation
Indices: 48490--48534 Score: 51
Period size: 7 Copynumber: 6.0 Consensus size: 8
48480 TTAATTTAAT
48490 TATATAAA
1 TATATAAA
48498 TATATAAA
1 TATATAAA
*
48506 TATTTAAA
1 TATATAAA
*
48514 -ATATATA
1 TATATAAA
48521 T-TATAAA
1 TATATAAA
48528 TA-ATAAA
1 TATATAAA
48535 ATAAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
7 16 0.52
8 15 0.48
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TATATAAA
Found at i:48534 original size:21 final size:23
Alignment explanation
Indices: 48491--48537 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
48481 TAATTTAATT
*
48491 ATATAAATATATAAATATTTAAA
1 ATATAAATATATAAATATATAAA
*
48514 ATATATAT-TATAAATA-ATAAA
1 ATATAAATATATAAATATATAAA
48535 ATA
1 ATA
48538 AATTTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 8 0.36
23 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATAAATATATAAATATATAAA
Found at i:48564 original size:66 final size:62
Alignment explanation
Indices: 48462--48606 Score: 141
Period size: 64 Copynumber: 2.2 Consensus size: 62
48452 TATTATTTAT
* * * *
48462 TAATAAAAATAATTTATTTTAATTTAATTATATAAATATATAAAT-ATTTAAAATATATATTATA
1 TAAT-AAAATAAATT-TTTAAATTTAATTATATAAATA-A-AAATAATTAAAAATATAAATTAT-
48526 AA
61 AA
* *
48528 TAATAAAATAAATTTTTAAATTTTATTATATTTAAATAAAAATAAATTAAAAATTTAAATTATAA
1 TAATAAAATAAATTTTTAAATTTAATTATA--TAAATAAAAAT-AATTAAAAATATAAATTATAA
*
48593 TCAT-AAATAAATTT
1 TAATAAAATAAATTT
48607 AATATAAATA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
64 28 0.41
65 15 0.22
66 25 0.37
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (62 bp):
TAATAAAATAAATTTTTAAATTTAATTATATAAATAAAAATAATTAAAAATATAAATTATAA
Found at i:48590 original size:34 final size:38
Alignment explanation
Indices: 48493--48602 Score: 95
Period size: 34 Copynumber: 2.9 Consensus size: 38
48483 ATTTAATTAT
*
48493 ATAAATATATAAATATTTAAAATATATATTATAAATAATAAA
1 ATAAAT-T-TAAAAATTT-AAAT-TATATTATAAATAATAAA
** *
48535 ATAAATTTTTAAATTT-TATTATATT-TAAAT-A-AAA
1 ATAAATTTAAAAATTTAAATTATATTATAAATAATAAA
*
48569 ATAAA-TTAAAAATTTAAATTATAATCATAAATAA
1 ATAAATTTAAAAATTTAAATTAT-ATTATAAATAA
48603 ATTTAATATA
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
33 8 0.14
34 13 0.23
35 3 0.05
36 10 0.18
37 7 0.12
38 2 0.04
40 6 0.11
41 1 0.02
42 6 0.11
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (38 bp):
ATAAATTTAAAAATTTAAATTATATTATAAATAATAAA
Found at i:48615 original size:15 final size:16
Alignment explanation
Indices: 48583--48624 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
48573 ATTAAAAATT
48583 TAAATTATAATCATAAA
1 TAAATT-TAATCATAAA
48600 TAAATTTAAT-ATAAA
1 TAAATTTAATCATAAA
*
48615 TATATTTAAT
1 TAAATTTAAT
48625 TTTTTGAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 14 0.58
16 4 0.17
17 6 0.25
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
TAAATTTAATCATAAA
Found at i:49303 original size:29 final size:29
Alignment explanation
Indices: 49246--49308 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 29
49236 AAGCTCAACA
49246 AAATAAAATTTTTATGATTTTTAATTTTT
1 AAATAAAATTTTTATGATTTTTAATTTTT
* *
49275 AAATAAAATAATTTTATTATTTTTATTTTTT
1 AAATAAAAT--TTTTATGATTTTTAATTTTT
49306 AAA
1 AAA
49309 ATTTTTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 9 0.30
31 21 0.70
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (29 bp):
AAATAAAATTTTTATGATTTTTAATTTTT
Found at i:49305 original size:16 final size:16
Alignment explanation
Indices: 49293--49349 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
49283 TAATTTTATT
49293 ATTTTTATTTTTTAAA
1 ATTTTTATTTTTTAAA
* *
49309 ATTTTTATTATTAAAA
1 ATTTTTATTTTTTAAA
* * *
49325 ATATAT-TTTTTTAAC
1 ATTTTTATTTTTTAAA
*
49340 ATTTTAATTT
1 ATTTTTATTT
49350 CTCAAAATAT
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
15 9 0.30
16 21 0.70
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTTTATTTTTTAAA
Found at i:49335 original size:31 final size:32
Alignment explanation
Indices: 49300--49366 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 32
49290 ATTATTTTTA
*
49300 TTTTTTAAAATTTTTATTAT-TAAAAATA-TAT
1 TTTTTTAAAATTTTAATT-TCTAAAAATATTAT
* *
49331 TTTTTTAACATTTTAATTTCTCAAAATATTAT
1 TTTTTTAAAATTTTAATTTCTAAAAATATTAT
49363 TTTT
1 TTTT
49367 ATAATAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 1 0.03
31 23 0.74
32 7 0.23
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (32 bp):
TTTTTTAAAATTTTAATTTCTAAAAATATTAT
Found at i:50399 original size:26 final size:25
Alignment explanation
Indices: 50370--50431 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 25
50360 TATTTTAATA
50370 ATATTTTTAAGGTT-ATTATTATGTTG
1 ATATTTTTAA--TTCATTATTATGTTG
50396 ATATTTTTTTAATTGCATTATTATGTTG
1 ATA--TTTTTAATT-CATTATTATGTTG
50424 ATATTTTT
1 ATATTTTT
50432 TAAAATTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
26 10 0.31
28 22 0.69
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (25 bp):
ATATTTTTAATTCATTATTATGTTG
Found at i:50488 original size:17 final size:19
Alignment explanation
Indices: 50436--50488 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
50426 ATTTTTTAAA
* *
50436 ATTAATAAAAGTTTATATT
1 ATTAATAAAAGATAATATT
50455 ATTAATAAAAGATAATATT
1 ATTAATAAAAGATAATATT
50474 ATT-ATAAAA-ATAATA
1 ATTAATAAAAGATAATA
50489 ATAGTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 20 0.62
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (19 bp):
ATTAATAAAAGATAATATT
Found at i:50643 original size:38 final size:37
Alignment explanation
Indices: 50617--50778 Score: 107
Period size: 31 Copynumber: 4.7 Consensus size: 37
50607 TCAATTTAGG
* *
50617 TTGTAATCATCTAAATTTTTTTAAATTTAAATTAAATA
1 TTGTAATCATCT-AATTATTTTAAATTTAAATTAAAGA
*
50655 TTGTAATCATCTAATTATTTT--A---AAATT-TAGA
1 TTGTAATCATCTAATTATTTTAAATTTAAATTAAAGA
*
50686 ATGTAATCATCTAATTA---T---TTTAAATTAAAGA
1 TTGTAATCATCTAATTATTTTAAATTTAAATTAAAGA
** * * * *
50717 TTGTAATTGTATAATTATTTTAAAATTTTAATT-TAGG
1 TTGTAATCATCTAATTATTTT-AAATTTAAATTAAAGA
* *
50754 TTGTAATTATTTAATTATTTTAAAT
1 TTGTAATCATCTAATTATTTTAAAT
50779 GGCTAAATCA
Statistics
Matches: 99, Mismatches: 14, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
28 1 0.01
30 5 0.05
31 34 0.34
32 5 0.05
34 1 0.01
35 1 0.01
36 4 0.04
37 29 0.29
38 19 0.19
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.51
Consensus pattern (37 bp):
TTGTAATCATCTAATTATTTTAAATTTAAATTAAAGA
Found at i:50677 original size:31 final size:30
Alignment explanation
Indices: 50642--50740 Score: 119
Period size: 31 Copynumber: 3.2 Consensus size: 30
50632 TTTTTTTAAA
50642 TTTAAATTAAATATTGTAATCATCTAATTAT
1 TTTAAATTAAA-ATTGTAATCATCTAATTAT
*
50673 TTTAAAATTTAGAA-TGTAATCATCTAATTAT
1 TTT-AAA-TTAAAATTGTAATCATCTAATTAT
** *
50704 TTTAAATTAAAGATTGTAATTGTATAATTAT
1 TTTAAATTAAA-ATTGTAATCATCTAATTAT
50735 TTTAAA
1 TTTAAA
50741 ATTTTAATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
29 4 0.07
30 4 0.07
31 43 0.73
32 4 0.07
33 4 0.07
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.47
Consensus pattern (30 bp):
TTTAAATTAAAATTGTAATCATCTAATTAT
Found at i:51305 original size:27 final size:27
Alignment explanation
Indices: 51264--51320 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
51254 TCTAAAATAA
* *
51264 TAATATTTTAATAATTTATTT-CAAAT
1 TAATATTTTAATAATTAATTTAAAAAT
*
51290 TAATATTTTTTATAATTAATTTAAAAAT
1 TAATA-TTTTAATAATTAATTTAAAAAT
51318 TAA
1 TAA
51321 AGATACTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.19
27 14 0.54
28 7 0.27
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
TAATATTTTAATAATTAATTTAAAAAT
Found at i:53851 original size:22 final size:22
Alignment explanation
Indices: 53826--53886 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
53816 CATGAAAAAA
53826 ATAATTAAAAATATAATATGAC
1 ATAATTAAAAATATAATATGAC
*
53848 ATAA--AAATAATATAAATATGAT
1 ATAATTAAA-AATAT-AATATGAC
*
53870 ATTATTAAAATATATAA
1 ATAATTAAAA-ATATAA
53887 AATTTTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
20 3 0.09
21 5 0.16
22 14 0.44
23 3 0.09
24 7 0.22
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (22 bp):
ATAATTAAAAATATAATATGAC
Found at i:53976 original size:17 final size:17
Alignment explanation
Indices: 53929--53979 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
53919 AAATTAATAT
*
53929 AAATATATAATATCTTAA
1 AAATATATAATAT-ATAA
*
53947 ATATTATTATAATATATAA
1 A-AATA-TATAATATATAA
53966 AAATATATAATATA
1 AAATATATAATATA
53980 AATATATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 9 0.32
18 4 0.14
19 7 0.25
20 8 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATATAATATATAA
Found at i:54634 original size:11 final size:12
Alignment explanation
Indices: 54632--54687 Score: 73
Period size: 11 Copynumber: 4.9 Consensus size: 12
54622 TATTTTTATA
*
54632 TTATATCATATT
1 TTATATTATATT
*
54644 TTATACTATATT
1 TTATATTATATT
54656 TTA-ATTAT-TT
1 TTATATTATATT
54666 TTATATTATA-T
1 TTATATTATATT
54677 TTATATTATAT
1 TTATATTATAT
54688 AATAATATCA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
10 5 0.13
11 20 0.53
12 13 0.34
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATATTATATT
Found at i:55577 original size:19 final size:18
Alignment explanation
Indices: 55542--55578 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
55532 TTGTATATAG
*
55542 TATTTTTTAAATTATTTT
1 TATTTTTTAAATCATTTT
55560 TATTTTTTAAATACATTTT
1 TATTTTTTAAAT-CATTTT
55579 AAGAGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTTTTTAAATCATTTT
Found at i:55922 original size:10 final size:10
Alignment explanation
Indices: 55818--55923 Score: 51
Period size: 10 Copynumber: 10.5 Consensus size: 10
55808 ATTCGTAATT
*
55818 ATATATTTTT
1 ATATATTTTA
*
55828 ATATATTATA
1 ATATATTTTA
55838 ATCATA-TTTA
1 AT-ATATTTTA
*
55848 A-AGTATTAT-
1 ATA-TATTTTA
*
55857 ATATA-TGTA
1 ATATATTTTA
*
55866 TATAAATTTTA
1 -ATATATTTTA
*
55877 ATATATTAATA
1 ATATATT-TTA
55888 A-ATTATTTTA
1 ATA-TATTTTA
* *
55898 TATAAATTTTG
1 -ATATATTTTA
55909 ATATATTTTA
1 ATATATTTTA
55919 ATATA
1 ATATA
55924 CACGTCGTAT
Statistics
Matches: 71, Mismatches: 14, Indels: 22
0.66 0.13 0.21
Matches are distributed among these distances:
8 3 0.04
9 5 0.07
10 43 0.61
11 19 0.27
12 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (10 bp):
ATATATTTTA
Found at i:57600 original size:48 final size:46
Alignment explanation
Indices: 57502--57613 Score: 120
Period size: 48 Copynumber: 2.3 Consensus size: 46
57492 TAAGTGTCGT
* *
57502 ATATAAATTATTCAAATTAATCGTGTGTATGAAAAAAAATTTTGTGAC
1 ATATAAATTATTCAAATTAA-C-TGTATATGAAAAAAAATTTTGTCAC
*
57550 ATATAAATTATTTAAATTAA-T-TATATGAATAAAAAATTTATGCATCAC
1 ATATAAATTATTCAAATTAACTGTATATGAA-AAAAAATTT-TG--TCAC
*
57598 ATATGAATTATTCAAA
1 ATATAAATTATTCAAA
57614 AAAAATTATA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
44 7 0.13
45 10 0.18
46 2 0.04
48 36 0.65
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.38
Consensus pattern (46 bp):
ATATAAATTATTCAAATTAACTGTATATGAAAAAAAATTTTGTCAC
Found at i:57633 original size:32 final size:32
Alignment explanation
Indices: 57580--57641 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
57570 TTATATGAAT
*
57580 AAAAAATTTATGCATCACATATGAATTATTCAA
1 AAAAAATTTATG-ATCACATATAAATTATTCAA
*
57613 AAAAAATTATATG-TCGCATATAAATTATT
1 AAAAAATT-TATGATCACATATAAATTATT
57642 TATATTAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 14 0.54
33 8 0.31
34 4 0.15
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (32 bp):
AAAAAATTTATGATCACATATAAATTATTCAA
Found at i:57664 original size:80 final size:77
Alignment explanation
Indices: 57533--57692 Score: 173
Period size: 80 Copynumber: 2.0 Consensus size: 77
57523 CGTGTGTATG
*
57533 AAAAAAAATTTTGTGACATATAAATTATTTAAATTAATTATATGAATAAAAAATTTATGCATCAC
1 AAAAAAAATTTTGTGACATATAAATTATTTAAATTAATTATATGAATAAAAAA-TAATGCATCAC
57598 ATATGAATTATTC
65 ATATGAATTATTC
* * * ***
57611 AAAAAAAATTATATGTCG-CATATAAATTATTTATATTAGTTGTGTATG-A-AAAAAATAATTTT
1 AAAAAAAATT-T-TGT-GACATATAAATTATTTAAATTA-AT-TATATGAATAAAAAATAATGCA
*
57673 TCGCATATGAATTATTC
61 TCACATATGAATTATTC
57690 AAA
1 AAA
57693 TTTAGTTGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
78 10 0.14
79 23 0.33
80 28 0.41
81 3 0.04
82 5 0.07
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (77 bp):
AAAAAAAATTTTGTGACATATAAATTATTTAAATTAATTATATGAATAAAAAATAATGCATCACA
TATGAATTATTC
Found at i:57664 original size:127 final size:127
Alignment explanation
Indices: 57420--57694 Score: 335
Period size: 127 Copynumber: 2.1 Consensus size: 127
57410 TATACGTCTG
* * *
57420 ATATGAATTATTCAAAATTAATTATATGAATGAAAAAAATTTATATATCACATTTGAATTATCCA
1 ATATGAATTATT-AAAATTAATTATATGAAT-AAAAAAATTTATACATCACATATGAATTATCAA
* *
57485 AACAAATTAAGTGTCGTATATAAATTATTCAAATTAATCGTGTGTATGAAAAAA-AATTTTGT-G
64 AAAAAATTAAGTGTCGCATATAAATTATTCAAATTAATC-TGTGTATGAAAAAATAATTTT-TCG
57548 AC
127 -C
* * *
57550 ATATAAATTATTTAAATTAATTATATGAAT-AAAAAATTTATGCATCACATATGAATTATTCAAA
1 ATATGAATTATTAAAATTAATTATATGAATAAAAAAATTTATACATCACATATGAATTA-TCAAA
* * *
57614 AAAAATTATA-TGTCGCATATAAATTATTTATATTAGT-TGTGTATGAAAAAAATAATTTTTCGC
65 AAAAATTA-AGTGTCGCATATAAATTATTCAAATTAATCTGTGTATG-AAAAAATAATTTTTCGC
*
57677 ATATGAATTATTCAAATT
1 ATATGAATTATTAAAATT
57695 TAGTTGTATG
Statistics
Matches: 127, Mismatches: 13, Indels: 13
0.83 0.08 0.08
Matches are distributed among these distances:
126 8 0.06
127 49 0.39
128 41 0.32
129 18 0.14
130 11 0.09
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (127 bp):
ATATGAATTATTAAAATTAATTATATGAATAAAAAAATTTATACATCACATATGAATTATCAAAA
AAAATTAAGTGTCGCATATAAATTATTCAAATTAATCTGTGTATGAAAAAATAATTTTTCGC
Found at i:57725 original size:127 final size:126
Alignment explanation
Indices: 57420--57738 Score: 339
Period size: 128 Copynumber: 2.5 Consensus size: 126
57410 TATACGTCTG
* * *
57420 ATATGAATTATTCAAAATTAATTATATGAATGAAAAAAATTTATATATCACATTTGAATTA-TCC
1 ATATGAATTATTC-AAATTAATTATATGAAT--AAAAAA-TTATATGTCACATATGAATTATTCA
* *
57484 AAACAAATTAAGTGTCGTATATAAATTATTCAAATTAATCGTGTGTATGAAAAAAAATTTTGTGA
62 AAAAAAATTAAGTGTCGCATATAAATTATTCAAATTAATC-TGTGTATGAAAAAAAATTTTGTGA
57549 C
126 C
* *
57550 ATATAAATTATTTAAATTAATTATATGAATAAAAAATT-TATGCATCACATATGAATTATTCAAA
1 ATATGAATTATTCAAATTAATTATATGAATAAAAAATTATATG--TCACATATGAATTATTCAAA
* * *
57614 AAAAATTATA-TGTCGCATATAAATTATTTATATTAGT-TGTGTATGAAAAAAATAATTTT-TCG
64 AAAAATTA-AGTGTCGCATATAAATTATTCAAATTAATCTGTGTATG-AAAAAA-AATTTTGT-G
57676 -C
125 AC
* * * * *
57677 ATATGAATTATTCAAATTTAGTTGTATGTATAGAAAATTACATGTCAC--ATGAATTATTCAAA
1 ATATGAATTATTCAAA-TTAATTATATGAATAAAAAATTATATGTCACATATGAATTATTCAAA
57739 TTAGTTGTAA
Statistics
Matches: 163, Mismatches: 17, Indels: 23
0.80 0.08 0.11
Matches are distributed among these distances:
125 17 0.10
126 10 0.06
127 45 0.28
128 59 0.36
129 21 0.13
130 11 0.07
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (126 bp):
ATATGAATTATTCAAATTAATTATATGAATAAAAAATTATATGTCACATATGAATTATTCAAAAA
AAATTAAGTGTCGCATATAAATTATTCAAATTAATCTGTGTATGAAAAAAAATTTTGTGAC
Found at i:57773 original size:2 final size:2
Alignment explanation
Indices: 57766--57792 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
57756 AAATAAATAA
57766 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
57793 AGTGGCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58003 original size:18 final size:16
Alignment explanation
Indices: 57980--58024 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
57970 AAAATTATTT
57980 AATATAAAAAATAATTAA
1 AATATAAAAAA-AATT-A
57998 AATATAAATAAAAATTA
1 AATATAAA-AAAAATTA
*
58015 ATTATAAAAA
1 AATATAAAAA
58025 TATGATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 2 0.08
17 8 0.32
18 12 0.48
19 3 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AATATAAAAAAAATTA
Found at i:58004 original size:11 final size:11
Alignment explanation
Indices: 57979--58026 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
57969 TAAAATTATT
57979 TAATATAAAAAA
1 TAAT-TAAAAAA
*
57991 TAATTAAAATA
1 TAATTAAAAAA
* *
58002 TAAATAAAAAT
1 TAATTAAAAAA
58013 TAATTATAAAAA
1 TAATTA-AAAAA
58025 TA
1 TA
58027 TGATAAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
TAATTAAAAAA
Found at i:58060 original size:17 final size:17
Alignment explanation
Indices: 58038--58093 Score: 73
Period size: 16 Copynumber: 3.4 Consensus size: 17
58028 GATAAATATA
58038 TATATAATATTAAATTT
1 TATATAATATTAAATTT
58055 TATATAATA-TAAATTAT
1 TATATAATATTAAATT-T
*
58072 TA-AT-ATATTAAAATT
1 TATATAATATTAAATTT
58087 TATATAA
1 TATATAA
58094 ATATATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
15 6 0.18
16 15 0.44
17 13 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATAATATTAAATTT
Found at i:58093 original size:27 final size:26
Alignment explanation
Indices: 57989--58111 Score: 72
Period size: 32 Copynumber: 4.5 Consensus size: 26
57979 TAATATAAAA
* * *
57989 AATAATTAAAATATAAATAAAAAT-T
1 AATAATTAAAATTTATATAAATATAT
* *
58014 AATTA-TAAAA-ATATGATAAATATAT
1 AATAATTAAAATTTAT-ATAAATATAT
*
58039 ATATAATATTAAATTTTATATAATATAAATTATT
1 A-AT-A-ATTAAAATTTATATAA-AT--A-TA-T
58073 AATATATTAAAATTTATATAAATATAT
1 AATA-ATTAAAATTTATATAAATATAT
*
58100 AATAATTTAAAT
1 AATAATTAAAAT
58112 ATATGAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 23
0.72 0.07 0.21
Matches are distributed among these distances:
23 3 0.04
24 12 0.15
25 6 0.08
26 9 0.12
27 5 0.06
28 3 0.04
29 9 0.12
30 5 0.06
31 2 0.03
32 18 0.23
33 4 0.05
34 2 0.03
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (26 bp):
AATAATTAAAATTTATATAAATATAT
Found at i:58537 original size:22 final size:21
Alignment explanation
Indices: 58506--58547 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
58496 AATTTTTATT
58506 TAAATTTAATTATAAA-ATATA
1 TAAATTTAA-TATAAACATATA
58527 TAAATATTAATATAAACATAT
1 TAAAT-TTAATATAAACATAT
58548 TTTAATCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATTTAATATAAACATATA
Found at i:59839 original size:16 final size:17
Alignment explanation
Indices: 59820--59857 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
59810 AGTTAGTCGT
* *
59820 AAAAAAAGAGAAAAGA-
1 AAAAAAAAAAAAAAGAG
59836 AAAAAAAAAAAAAAGAG
1 AAAAAAAAAAAAAAGAG
59853 AAAAA
1 AAAAA
59858 GCAAAAGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAAGAG
Found at i:60944 original size:30 final size:30
Alignment explanation
Indices: 60901--60967 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
60891 ATTAAAAATT
* *
60901 TTAAATTTATATTTATATTTATTTATTTAAAA
1 TTAAA-TTATATTTATATTCATTCATTT-AAA
* *
60933 TTAAATT-TATTTGTGTTCATTCATTTAAA
1 TTAAATTATATTTATATTCATTCATTTAAA
60962 TTAAAT
1 TTAAAT
60968 AGTTTTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 9 0.29
30 15 0.48
31 2 0.06
32 5 0.16
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (30 bp):
TTAAATTATATTTATATTCATTCATTTAAA
Found at i:61051 original size:22 final size:23
Alignment explanation
Indices: 60992--61064 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 23
60982 ACACTAAATG
* * *
60992 AATATATTTATGAATATATAATCG
1 AATATATTCATGAATA-ATAAACA
* * *
61016 AACATATTCGTGAATAATTAA-A
1 AATATATTCATGAATAATAAACA
61038 AATATATTCATGAATAATAAACA
1 AATATATTCATGAATAATAAACA
61061 AATA
1 AATA
61065 AATCTAAACA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
22 18 0.46
23 8 0.21
24 13 0.33
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (23 bp):
AATATATTCATGAATAATAAACA
Found at i:62965 original size:18 final size:18
Alignment explanation
Indices: 62944--62991 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
62934 TATTATAATT
*
62944 TAAATTATTT-TTAAATA
1 TAAATTATTTATAAAATA
*
62961 CTAAATAATTTATAAAATA
1 -TAAATTATTTATAAAATA
*
62980 TAAAATATTTAT
1 TAAATTATTTAT
62992 TGACATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATTATTTATAAAATA
Found at i:63044 original size:16 final size:18
Alignment explanation
Indices: 63012--63045 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
63002 TTTTAAAAAT
63012 TTTTTCCTCTTTATTATA
1 TTTTTCCTCTTTATTATA
63030 TTTTTCCT-TTT-TTATA
1 TTTTTCCTCTTTATTATA
63046 CTCTTTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 3 0.19
18 8 0.50
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTCCTCTTTATTATA
Found at i:67998 original size:24 final size:24
Alignment explanation
Indices: 67952--68012 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
67942 AAAAAATTAA
67952 AAAATTATAATATAAATTTAAATC
1 AAAATTATAATATAAATTTAAATC
67976 AAAATT-T-ATATAATATTTAAAAT-
1 AAAATTATAATATAA-ATTT-AAATC
*
67999 ATAATTATAATATA
1 AAAATTATAATATA
68013 TAAAATTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
22 6 0.19
23 10 0.31
24 11 0.34
25 5 0.16
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
AAAATTATAATATAAATTTAAATC
Found at i:68004 original size:23 final size:22
Alignment explanation
Indices: 67952--67996 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 22
67942 AAAAAATTAA
67952 AAAATTATAATATAAATTTAAATC
1 AAAATT-T-ATATAAATTTAAATC
67976 AAAATTTATATAATATTTAAA
1 AAAATTTATATAA-ATTTAAA
67997 ATATAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 8 0.40
24 6 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATTTATATAAATTTAAATC
Found at i:69377 original size:28 final size:27
Alignment explanation
Indices: 69316--69383 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 27
69306 TGAAATTCGA
69316 TCGAAAATATGATTATGAAGGAATTCTG
1 TCGAAAATATG-TTATGAAGGAATTCTG
*
69344 TCGAAAATATGTTCT-AATGGAATTCTG
1 TCGAAAATATGTTATGAA-GGAATTCTG
69371 TCTG-AAATATGTT
1 TC-GAAAATATGTT
69384 TTCGACAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 2 0.05
27 23 0.62
28 12 0.32
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
TCGAAAATATGTTATGAAGGAATTCTG
Found at i:71234 original size:21 final size:21
Alignment explanation
Indices: 71201--71258 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
71191 TTTATATATT
71201 ATTTTATTAAATTTAAATAAAA
1 ATTTTATT-AATTTAAATAAAA
*
71223 ATTTTATTAA-TTAAATAATA
1 ATTTTATTAATTTAAATAAAA
*
71243 ATTTAAATTAATTTAA
1 ATTT-TATTAATTTAA
71259 TTTAAATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.41
21 7 0.22
22 12 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTTATTAATTTAAATAAAA
Found at i:73220 original size:6 final size:6
Alignment explanation
Indices: 73211--73241 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
73201 TGCTCATTGG
*
73211 TTTTGA TTTTAA TTTTAA TTTTAA TTTTAA T
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA T
73242 AGTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:73458 original size:30 final size:30
Alignment explanation
Indices: 73424--73480 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
73414 AGTGAAATTT
* * *
73424 AAAATTATCAATTATTGGACTAAAATTAAG
1 AAAATTAACAAGTACTGGACTAAAATTAAG
*
73454 AAAATTAAGAAGTACTGGACTAAAATT
1 AAAATTAACAAGTACTGGACTAAAATT
73481 TATAAGAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (30 bp):
AAAATTAACAAGTACTGGACTAAAATTAAG
Found at i:77822 original size:19 final size:19
Alignment explanation
Indices: 77788--77825 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
77778 ATAAAGATAA
77788 AAATAATTAAATTTATAGT
1 AAATAATTAAATTTATAGT
77807 AAATAGATTAAA-TTATAGT
1 AAATA-ATTAAATTTATAGT
77826 TCTTATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (19 bp):
AAATAATTAAATTTATAGT
Found at i:77939 original size:20 final size:22
Alignment explanation
Indices: 77908--77986 Score: 69
Period size: 22 Copynumber: 3.7 Consensus size: 22
77898 AATAATTTTA
77908 AATATAA-ATATAACATAAA-AAT
1 AATATAATATAT-A-ATAAATAAT
77930 AAT-TAATATATAATAAATAAT
1 AATATAATATATAATAAATAAT
* *
77951 AATATAATAACATTATAAAT-AT
1 AATATAAT-ATATAATAAATAAT
*
77973 AATAT-ATAAATAAT
1 AATATAATATATAAT
77987 TATATAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 10 0.20
21 12 0.24
22 18 0.37
23 9 0.18
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (22 bp):
AATATAATATATAATAAATAAT
Found at i:77942 original size:17 final size:17
Alignment explanation
Indices: 77922--78028 Score: 57
Period size: 17 Copynumber: 6.5 Consensus size: 17
77912 TAAATATAAC
77922 ATAAAAATAATTAATAT
1 ATAAAAATAATTAATAT
77939 ATAATAAATAA-TAATAT
1 ATAA-AAATAATTAATAT
* *
77956 A-ATAACATTA-TAA-AT
1 ATA-AAAATAATTAATAT
* *
77971 ATAATATATAAATAAT-T
1 ATAA-AAATAATTAATAT
*
77988 ATATAAA-AATT-ATAT
1 ATAAAAATAATTAATAT
* *
78003 ATCACAAATTATTAATAT
1 AT-AAAAATAATTAATAT
*
78021 ATTAAAAT
1 ATAAAAAT
78029 TTATAAATAT
Statistics
Matches: 69, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
14 2 0.03
15 10 0.14
16 19 0.28
17 26 0.38
18 12 0.17
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
ATAAAAATAATTAATAT
Found at i:77960 original size:11 final size:12
Alignment explanation
Indices: 77908--77993 Score: 58
Period size: 11 Copynumber: 7.2 Consensus size: 12
77898 AATAATTTTA
77908 AATATAA-ATAT
1 AATATAATATAT
* *
77919 AACATAA-AAAT
1 AATATAATATAT
77930 AAT-TAATATAT
1 AATATAATATAT
77941 AATA-AATA-AT
1 AATATAATATAT
77951 AATATAATAACATTAT
1 AATATAAT---A-TAT
77967 AAATATAATATAT
1 -AATATAATATAT
77980 AA-ATAATTATAT
1 AATATAA-TATAT
77992 AA
1 AA
77994 AAATTATATA
Statistics
Matches: 61, Mismatches: 4, Indels: 19
0.73 0.05 0.23
Matches are distributed among these distances:
10 9 0.15
11 28 0.46
12 9 0.15
13 3 0.05
14 2 0.03
16 2 0.03
17 8 0.13
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (12 bp):
AATATAATATAT
Found at i:77992 original size:36 final size:32
Alignment explanation
Indices: 77911--78001 Score: 103
Period size: 34 Copynumber: 2.8 Consensus size: 32
77901 AATTTTAAAT
* * *
77911 ATAAAT-ATAACATAAAAATAATTAATATATA
1 ATAAATAATAATATAAAAATTATAAATATATA
77942 ATAAATAATAATATAATAACATTATAAATATAATA
1 ATAAATAATAATATAA-AA-ATTATAAATAT-ATA
*
77977 TATAAATAATTATATAAAAATTATA
1 -ATAAATAATAATATAAAAATTATA
78002 TATCACAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
31 6 0.12
32 8 0.16
33 2 0.04
34 15 0.29
35 5 0.10
36 15 0.29
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (32 bp):
ATAAATAATAATATAAAAATTATAAATATATA
Found at i:77998 original size:11 final size:12
Alignment explanation
Indices: 77928--78003 Score: 61
Period size: 11 Copynumber: 6.2 Consensus size: 12
77918 TAACATAAAA
*
77928 ATAATTAATATAT
1 ATAAATAAT-TAT
*
77941 AATAAATAATAAT
1 -ATAAATAATTAT
77954 AT-AATAACATTAT
1 ATAAAT-A-ATTAT
77967 A-AATATAA-TAT
1 ATAA-ATAATTAT
77978 ATAAATAATTAT
1 ATAAATAATTAT
77990 ATAAA-AATTAT
1 ATAAATAATTAT
78001 ATA
1 ATA
78004 TCACAAATTA
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
11 20 0.38
12 14 0.26
13 9 0.17
14 10 0.19
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (12 bp):
ATAAATAATTAT
Found at i:78390 original size:17 final size:17
Alignment explanation
Indices: 78370--78419 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
78360 ATATATAAAT
78370 ATATTAAAATTTATATA
1 ATATTAAAATTTATATA
*
78387 ATA-T-AAA-TTATTAAA
1 ATATTAAAATTTA-TATA
78402 ATATTAAAATTTATATA
1 ATATTAAAATTTATATA
78419 A
1 A
78420 AAATATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
14 3 0.11
15 9 0.33
16 2 0.07
17 10 0.37
18 3 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATTAAAATTTATATA
Found at i:78411 original size:32 final size:33
Alignment explanation
Indices: 78349--78421 Score: 114
Period size: 32 Copynumber: 2.2 Consensus size: 33
78339 TAATTATATA
78349 ATATAAAATAAATATATAAATATATTAAAATTT
1 ATATAAAATAAATATATAAATATATTAAAATTT
*
78382 ATATAATATAAAT-TATTAAA-ATATTAAAATTT
1 ATATAAAATAAATATA-TAAATATATTAAAATTT
78414 ATATAAAA
1 ATATAAAA
78422 ATATTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
32 21 0.57
33 16 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (33 bp):
ATATAAAATAAATATATAAATATATTAAAATTT
Found at i:78422 original size:20 final size:19
Alignment explanation
Indices: 78361--78426 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 19
78351 ATAAAATAAA
78361 TATATAAATATATTAAAATT
1 TATATAAA-ATATTAAAATT
78381 TATAT--AATA-T-AAA-T
1 TATATAAAATATTAAAATT
78395 TAT-TAAAATATTAAAATT
1 TATATAAAATATTAAAATT
78413 TATATAAAAATATT
1 TATAT-AAAATATT
78427 TTAAATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 1 0.03
14 4 0.10
15 7 0.18
16 2 0.05
17 6 0.15
18 5 0.13
19 1 0.03
20 13 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TATATAAAATATTAAAATT
Found at i:78686 original size:23 final size:23
Alignment explanation
Indices: 78659--78734 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 23
78649 CACATTAAAA
78659 AAATTAAATATTAAATAATTAAT
1 AAATTAAATATTAAATAATTAAT
* * * *
78682 AAATTTAATATTATATAAATATT
1 AAATTAAATATTAAATAATTAAT
* *
78705 AAA-T--ATAATAAATATTTAAT
1 AAATTAAATATTAAATAATTAAT
*
78725 AAATGAAATA
1 AAATTAAATA
78735 ATGTAACTTT
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
20 14 0.35
22 1 0.03
23 25 0.62
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (23 bp):
AAATTAAATATTAAATAATTAAT
Found at i:78733 original size:16 final size:16
Alignment explanation
Indices: 78663--78734 Score: 69
Period size: 16 Copynumber: 4.4 Consensus size: 16
78653 TTAAAAAAAT
78663 TAAATATTAAATAATTAA
1 TAAATATTAAAT-A-TAA
78681 TAAAT-TT-AATATTATA
1 TAAATATTAAATA-TA-A
78697 TAAATATTAAATATAA
1 TAAATATTAAATATAA
*
78713 TAAATATTTAATA-AA
1 TAAATATTAAATATAA
78728 TGAAATA
1 T-AAATA
78735 ATGTAACTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
15 7 0.14
16 27 0.55
17 6 0.12
18 9 0.18
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (16 bp):
TAAATATTAAATATAA
Found at i:79716 original size:20 final size:19
Alignment explanation
Indices: 79693--79731 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
79683 TTAATTTATT
*
79693 AATTTTTAAAATTATTAAAA
1 AATTATTAAAATTA-TAAAA
*
79713 AATTATTAATATTATAAAA
1 AATTATTAAAATTATAAAA
79732 TTTTGGTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATTATTAAAATTATAAAA
Found at i:91918 original size:27 final size:28
Alignment explanation
Indices: 91883--91953 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
91873 TATTTAATAA
91883 ATAAAAATATTTTTATTTAAAATGAATT
1 ATAAAAATATTTTTATTTAAAATGAATT
*** * *
91911 AT-AAAATATAAATATTTAATATTAATT
1 ATAAAAATATTTTTATTTAAAATGAATT
91938 ATAAAAATATGTTTTA
1 ATAAAAATAT-TTTTA
91954 ATAATTTTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
27 22 0.67
28 9 0.27
29 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (28 bp):
ATAAAAATATTTTTATTTAAAATGAATT
Found at i:93232 original size:27 final size:26
Alignment explanation
Indices: 93200--93356 Score: 88
Period size: 27 Copynumber: 5.8 Consensus size: 26
93190 TTTTAAATTT
93200 TATTATTATTTATAATTATATTTAAAA
1 TATTATTATTTAT-ATTATATTTAAAA
* *
93227 TATTATATATTTATA-TAAATTTTAATA
1 TATTAT-TATTTATATTATA-TTTAAAA
* **
93254 TATTAATAATTTATATTATA-TTAATTT
1 TATT-ATTATTTATATTATATTTAA-AA
* * * *
93281 TAATATATATTAATATTATATTTATAT
1 TATTAT-TATTTATATTATATTTAAAA
*
93308 TATT-TTAAATATTTTATTATATTTAAAA
1 TATTATT--AT-TTATATTATATTTAAAA
*
93336 T-TTTTTATATTATATTTATAT
1 TATTATTAT-TTATA-TTATAT
93357 CGTATAACAT
Statistics
Matches: 102, Mismatches: 16, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
25 1 0.01
26 17 0.17
27 53 0.52
28 31 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
TATTATTATTTATATTATATTTAAAA
Found at i:93274 original size:32 final size:33
Alignment explanation
Indices: 93232--93320 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
93222 TAAAATATTA
93232 TATATTTATATAAATTTTAATATATTAATAAT-T
1 TATA-TTATATAAATTTTAATATATTAATAATAT
* *
93265 TATATTATATTAATTTTAATATA-TATTAATAT
1 TATATTATATAAATTTTAATATATTAATAATAT
*
93297 TATATT-TATATTATTTTAA-ATATT
1 TATATTATATA-AATTTTAATATATT
93321 TTATTATATT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
31 12 0.24
32 33 0.67
33 4 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (33 bp):
TATATTATATAAATTTTAATATATTAATAATAT
Found at i:93274 original size:38 final size:38
Alignment explanation
Indices: 93232--93356 Score: 100
Period size: 38 Copynumber: 3.3 Consensus size: 38
93222 TAAAATATTA
*
93232 TATATTTATATAAATTTTAATATATTAATAATTTATAT
1 TATATTTATATAAATTTTATTATATTAATAATTTATAT
* * * *
93270 TATATTAATTTTAATATATATTAATATT-AT-ATTTATAT
1 TATATTTATATAAAT-TTTATT-ATATTAATAATTTATAT
*
93308 TAT-TTTA-A-ATATTTTATTATATTTAA-AATTTTTTATAT
1 TATATTTATATAAATTTTATTATA-TTAATAA---TTTATAT
93346 TATATTTATAT
1 TATATTTATAT
93357 CGTATAACAT
Statistics
Matches: 66, Mismatches: 10, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
33 3 0.05
34 7 0.11
35 4 0.06
37 3 0.05
38 33 0.50
39 10 0.15
40 6 0.09
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (38 bp):
TATATTTATATAAATTTTATTATATTAATAATTTATAT
Found at i:93330 original size:33 final size:32
Alignment explanation
Indices: 93232--93330 Score: 96
Period size: 32 Copynumber: 3.0 Consensus size: 32
93222 TAAAATATTA
* * *
93232 TATATTTATATAAATTTTAATATATTAATA-AT
1 TATATTTATAT-TATTTTAATATTTTATTATAT
*
93264 T-TATATTATATTAATTTTAATA-TATATTAATAT
1 TATAT-TTATATT-ATTTTAATATTTTATT-ATAT
93297 TATATTTATATTATTTTAAATATTTTATTATAT
1 TATATTTATATTATTTT-AATATTTTATTATAT
93330 T
1 T
93331 TAAAATTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
31 6 0.11
32 22 0.40
33 19 0.35
34 8 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (32 bp):
TATATTTATATTATTTTAATATTTTATTATAT
Found at i:94054 original size:2 final size:2
Alignment explanation
Indices: 94047--94080 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
94037 AGTCAATGGT
*
94047 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94081 ACACAAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:94735 original size:19 final size:20
Alignment explanation
Indices: 94708--94746 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
94698 ATTATTGTAA
*
94708 AAATATATA-AAATTAATTG
1 AAATATATACAAATAAATTG
*
94727 AAATTTATACAAATAAATTG
1 AAATATATACAAATAAATTG
94747 CGTGTGCGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
AAATATATACAAATAAATTG
Found at i:97179 original size:35 final size:35
Alignment explanation
Indices: 97100--97179 Score: 87
Period size: 35 Copynumber: 2.3 Consensus size: 35
97090 AATTAATATA
* *
97100 TTATATTATA-TATATTTATATTTTTATGTTATTT
1 TTATATTGTATTATATTTATATTTTTATGTTACTT
97134 TTATGA-TGTATTATATTTTATATTATTT-T-TTACTT
1 TTAT-ATTGTATTATA-TTTATATT-TTTATGTTACTT
97169 TTATATTGTAT
1 TTATATTGTAT
97180 AATCAAATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
34 8 0.21
35 19 0.49
36 9 0.23
37 3 0.08
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (35 bp):
TTATATTGTATTATATTTATATTTTTATGTTACTT
Found at i:101499 original size:22 final size:22
Alignment explanation
Indices: 101472--101515 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
101462 AGAGTAATTG
101472 AGAATTTGAATTTAAAAAGGAA
1 AGAATTTGAATTTAAAAAGGAA
* *
101494 AGAATTTGGATTTGAAAAGGAA
1 AGAATTTGAATTTAAAAAGGAA
101516 GTTTAATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (22 bp):
AGAATTTGAATTTAAAAAGGAA
Found at i:101960 original size:20 final size:20
Alignment explanation
Indices: 101937--102064 Score: 114
Period size: 20 Copynumber: 5.8 Consensus size: 20
101927 ATGTATCCAG
101937 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
* *
101957 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
101977 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
*
101997 ATATATCGATACATTCTATCCTTTTACCTA
1 ATGTATCGATACA---T-T-C--TT--C-A
102027 GATGTATCGATACATTCTTCA
1 -ATGTATCGATACATTCTTCA
102048 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
102065 GTCTTTTTAC
Statistics
Matches: 89, Mismatches: 6, Indels: 26
0.74 0.05 0.21
Matches are distributed among these distances:
19 1 0.01
20 61 0.69
21 2 0.02
22 1 0.01
23 1 0.01
24 3 0.03
25 1 0.01
26 1 0.01
27 3 0.03
28 1 0.01
29 1 0.01
30 1 0.01
31 12 0.13
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:102055 original size:51 final size:51
Alignment explanation
Indices: 101975--102112 Score: 206
Period size: 51 Copynumber: 2.7 Consensus size: 51
101965 ATACATGTAT
*
101975 GAATGTATCGATACATTCTTCAATATATCGATACATTCTATCCTTTTACCTA
1 GAATGTATCGATACATTCTTCAATGTATCGATACATTCTATCCTTTTACC-A
* * *
102027 G-ATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTTTACCC
1 GAATGTATCGATACATTCTTCAATGTATCGATACATTCTATCCTTTTACCA
* *
102077 GAATGTATCGATACATTTTTCAATGTATTGATACAT
1 GAATGTATCGATACATTCTTCAATGTATCGATACAT
102113 CTAGTTAAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
50 1 0.01
51 77 0.97
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (51 bp):
GAATGTATCGATACATTCTTCAATGTATCGATACATTCTATCCTTTTACCA
Found at i:109316 original size:20 final size:21
Alignment explanation
Indices: 109274--109328 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
109264 TTTACCTAGA
*
109274 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCTGCAT
*
109294 TGTATCGATACATTGCT-CCT
1 TGTATCGATACATTGCTGCAT
*
109314 TGTATCGATGCATTG
1 TGTATCGATACATTG
109329 TATCGATACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTGCTGCAT
Found at i:112372 original size:17 final size:15
Alignment explanation
Indices: 112352--112410 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 15
112342 TTAGGTAAAA
112352 AAGAAAGAAAGAAGATG
1 AAGAAAGAAAGAA-A-G
112369 AAG-AAGAAAGAAAG
1 AAGAAAGAAAGAAAG
*
112383 AA-AAAGAAA-AAAA
1 AAGAAAGAAAGAAAG
112396 AAGAAA-AAA-AAAG
1 AAGAAAGAAAGAAAG
112409 AA
1 AA
112411 AAAAATATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 13 0.34
14 12 0.32
15 1 0.03
16 9 0.24
17 3 0.08
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (15 bp):
AAGAAAGAAAGAAAG
Found at i:112390 original size:10 final size:10
Alignment explanation
Indices: 112349--112415 Score: 73
Period size: 10 Copynumber: 6.4 Consensus size: 10
112339 GGGTTAGGTA
112349 AAAAAGAAAG
1 AAAAAGAAAG
112359 AAAGAAGATGAAG
1 AAA-AAGA--AAG
112372 AAGAAAGAAAG
1 AA-AAAGAAAG
*
112383 AAAAAGAAAA
1 AAAAAGAAAG
*
112393 AAAAAGAAAA
1 AAAAAGAAAG
112403 AAAAAGAAA-
1 AAAAAGAAAG
112412 AAAA
1 AAAA
112416 TATGAAATGG
Statistics
Matches: 52, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
9 4 0.08
10 29 0.56
11 9 0.17
13 9 0.17
14 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:112398 original size:20 final size:20
Alignment explanation
Indices: 112348--112415 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
112338 AGGGTTAGGT
* *
112348 AAAAAAGAAAGAAAGAAGATG
1 AAAAAA-AAAGAAAGAAAAAG
* *
112369 AAGAAGAAAGAAAGAAAAAG
1 AAAAAAAAAGAAAGAAAAAG
*
112389 AAAAAAAAAGAAAAAAAAAG
1 AAAAAAAAAGAAAGAAAAAG
112409 AAAAAAA
1 AAAAAAA
112416 TATGAAATGG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 36 0.90
21 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAAAAAAAGAAAGAAAAAG
Found at i:118873 original size:23 final size:24
Alignment explanation
Indices: 118821--118866 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
118811 CCTTTAAATG
*
118821 ACAAAAAAAGTCAAAAGCAAAAGC
1 ACAAAAAAAGTCAAAAGAAAAAGC
*
118845 ACAAAAAAA-TGAAAAGAAAAAG
1 ACAAAAAAAGTCAAAAGAAAAAG
118867 TGCAAAAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.72, C:0.11, G:0.13, T:0.04
Consensus pattern (24 bp):
ACAAAAAAAGTCAAAAGAAAAAGC
Found at i:120204 original size:27 final size:27
Alignment explanation
Indices: 120174--121285 Score: 1801
Period size: 27 Copynumber: 40.6 Consensus size: 27
120164 ATCGTGACCT
*
120174 CTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120201 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
120229 TTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120256 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * **
120283 CTTTTAAGTCCACGACTCAGTGGCATTTT
1 CTTTTAAGTCCACAACTCCGTGGCA--CC
* *
120312 CTTTTAAAGTCCACAACTCTGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
120340 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120367 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
120395 CTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
120422 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120449 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120476 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
120504 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120531 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
120558 CTTTTAAAGTCCAGAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
120586 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
120614 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
120641 CTTTTAAGTCCACAACTCTGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
120669 CTTTTAAGTCCACAATTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120696 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120723 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
120750 CTTTTAAAGTCCAGAACTCTGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
120778 CTTTTAAAGTCCACAACTCCGTGGCCCC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
120806 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
120833 CTTTTGAAGTCCACAACTCCGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
120861 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
120888 CTTTTAAGTCCTCAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
120915 ATTTTAAGTCCACAATTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
120942 CTTTTAAGTCCACAACTCCGTGGTACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
120969 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
120997 CTTTTAAGTCCACAACTCCATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
121024 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
121051 TTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
121078 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
121106 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
121134 CTTTTAAGTCCACAACTCCGTGGAACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
121161 CTTTTGAAGTCCACAACTCCGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
121189 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
121216 CTTTTAAGTCCACAATTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
121243 ATTTTAAGTCCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
121270 TTTTTTAAGTCCACAA
1 -CTTTTAAGTCCACAA
121286 GGCGATGGCA
Statistics
Matches: 1021, Mismatches: 50, Indels: 27
0.93 0.05 0.02
Matches are distributed among these distances:
27 638 0.62
28 360 0.35
29 5 0.00
30 18 0.02
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:120260 original size:55 final size:54
Alignment explanation
Indices: 120174--121285 Score: 1801
Period size: 55 Copynumber: 20.3 Consensus size: 54
120164 ATCGTGACCT
*
120174 CTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACC
*
120229 TTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* * ** * *
120283 CTTTTAAGTCCACGACTCAGTGGCATTTTCTTTTAAAGTCCACAACTCTGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCA--CCCTTTT-AAGTCCACAACTCCGTGGCACC
*
120340 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACC
* *
120395 CTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
120449 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CC
120504 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
120558 CTTTTAAAGTCCAGAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACC
*
120614 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CC
*
120669 CTTTTAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* *
120723 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCAGAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACC
*
120778 CTTTTAAAGTCCACAACTCCGTGGCCCCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
120833 CTTTTGAAGTCCACAACTCCGTGGTACCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* * *
120888 CTTTTAAGTCCTCAACTCCGTGGCACCATTTTAAGTCCACAATTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
120942 CTTTTAAGTCCACAACTCCGTGGTACCCTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CC
*
120997 CTTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
121051 TTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACC
*
121106 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGAACC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
121161 CTTTTGAAGTCCACAACTCCGTGGTACCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* * *
121216 CTTTTAAGTCCACAATTCCGTGGCACCATTTTAAGTCCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
121270 TTTTTTAAGTCCACAA
1 -CTTTTAAGTCCACAA
121286 GGCGATGGCA
Statistics
Matches: 988, Mismatches: 56, Indels: 26
0.92 0.05 0.02
Matches are distributed among these distances:
54 344 0.35
55 516 0.52
56 85 0.09
57 43 0.04
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (54 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
Found at i:121295 original size:82 final size:81
Alignment explanation
Indices: 120174--121285 Score: 1801
Period size: 82 Copynumber: 13.5 Consensus size: 81
120164 ATCGTGACCT
* *
120174 CTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTC
120239 CACAACTCCGTGGCACC
65 CACAACTCCGTGGCACC
* * **
120256 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTCAGTGGCATTTTCTTTTAAAG
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA--CCCTTTT-AAG
* *
120321 TCCACAACTCTGTGGCATC
63 TCCACAACTCCGTGGCACC
* *
120340 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTTAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTC
120405 CACAACTCCGTGGCACC
65 CACAACTCCGTGGCACC
*
120422 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
120487 ACAACTCCGTGGCATCC
66 ACAACTCCGTGGCA-CC
120504 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTC
*
120569 CAGAACTCCGTGGCACC
65 CACAACTCCGTGGCACC
120586 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
120651 CACAACTCTGTGGCATCC
65 CACAACTCCGTGGCA-CC
*
120669 CTTTTAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
120734 ACAACTCCGTGGCACC
66 ACAACTCCGTGGCACC
* * *
120750 CTTTTAAAGTCCAGAACTCTGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCCCCCTTTTAAGT
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGT
120815 CCACAACTCCGTGGCACC
64 CCACAACTCCGTGGCACC
*
120833 CTTTTGAAGTCCACAACTCCGTGGTACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
120898 CTCAACTCCGTGGCACC
65 CACAACTCCGTGGCACC
* * *
120915 ATTTTAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGTACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
120980 ACAACTCCGTGGCATCC
66 ACAACTCCGTGGCA-CC
* *
120997 CTTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
121062 ACAACTCCGTGGCACC
66 ACAACTCCGTGGCACC
121078 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGT
*
121143 CCACAACTCCGTGGAACC
64 CCACAACTCCGTGGCACC
*
121161 CTTTTGAAGTCCACAACTCCGTGGTACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
121226 CACAATTCCGTGGCACC
65 CACAACTCCGTGGCACC
* * *
121243 ATTTTAAGTCCACAACTTCGTGGCACCTTTTTTAAGTCCACAA
1 CTTTTAAGTCCACAACTCCGTGGCACC-CTTTTAAGTCCACAA
121286 GGCGATGGCA
Statistics
Matches: 962, Mismatches: 54, Indels: 28
0.92 0.05 0.03
Matches are distributed among these distances:
81 168 0.17
82 481 0.50
83 244 0.25
84 51 0.05
85 18 0.02
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (81 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACC
Done.