Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold24
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3006277
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.30
Warning! 383161 characters in sequence are not A, C, G, or T
File 15 of 19
Found at i:2218643 original size:8 final size:8
Alignment explanation
Indices: 2218630--2218695 Score: 50
Period size: 8 Copynumber: 8.8 Consensus size: 8
2218620 ATGTTGAAGA
2218630 ATTATTTT
1 ATTATTTT
2218638 ATTATTTT
1 ATTATTTT
*
2218646 ATTATATT
1 ATTATTTT
***
2218654 ATTAAAAT
1 ATTATTTT
2218662 ATTA-TTT
1 ATTATTTT
*
2218669 -TTATATT
1 ATTATTTT
*
2218676 AATA-TTT
1 ATTATTTT
2218683 A-TATTTT
1 ATTATTTT
2218690 ATTATT
1 ATTATT
2218696 AAATTTAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
6 5 0.11
7 10 0.22
8 31 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
ATTATTTT
Found at i:2218679 original size:17 final size:20
Alignment explanation
Indices: 2218631--2218707 Score: 74
Period size: 19 Copynumber: 4.0 Consensus size: 20
2218621 TGTTGAAGAA
*
2218631 TTATT-TTATTATTT-TATT
1 TTATTATTAATATTTATATT
* *
2218649 ATATTATTAAAATATTAT-TT
1 TTATTATTAATAT-TTATATT
2218669 TTA-TATTAATATTTATATT
1 TTATTATTAATATTTATATT
*
2218688 TTATTATTAA-ATTTAAATT
1 TTATTATTAATATTTATATT
2218707 T
1 T
2218708 AAATATTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
18 8 0.17
19 27 0.56
20 12 0.25
21 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTATTATTAATATTTATATT
Found at i:2218681 original size:25 final size:24
Alignment explanation
Indices: 2218637--2218732 Score: 79
Period size: 25 Copynumber: 3.9 Consensus size: 24
2218627 AGAATTATTT
* *
2218637 TATTA-TTTTATTATATTATTAAAA
1 TATTATTTTTATT-TAATATTTAAA
*
2218661 TATTATTTTTATATTAATATTTATA
1 TATTATTTTTAT-TTAATATTTAAA
* *
2218686 TTTTATTATTAAATTTAA-ATTTAAA
1 TATTATT-TT-TATTTAATATTTAAA
* *
2218711 TATTATTGTTATTAAATATTTA
1 TATTATTTTTATTTAATATTTA
2218733 TTTAAATTAA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
23 5 0.09
24 11 0.19
25 32 0.56
26 7 0.12
27 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (24 bp):
TATTATTTTTATTTAATATTTAAA
Found at i:2218714 original size:19 final size:20
Alignment explanation
Indices: 2218671--2218715 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
2218661 TATTATTTTT
* *
2218671 ATATTAATATTTATATTTTA
1 ATATTAATATTTAAATTTAA
*
2218691 TTATTAA-ATTTAAATTTAA
1 ATATTAATATTTAAATTTAA
2218710 ATATTA
1 ATATTA
2218716 TTGTTATTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATTAATATTTAAATTTAA
Found at i:2218731 original size:49 final size:49
Alignment explanation
Indices: 2218658--2218759 Score: 127
Period size: 49 Copynumber: 2.1 Consensus size: 49
2218648 TATATTATTA
* * **
2218658 AAATATTATTTTTATATTAATATTTATATTTTATT-ATTAAATTTAAATTT
1 AAATATTATTGTTATATAAATATTTAT-TTAAATTAATT-AATTTAAATTT
2218708 AAATATTATTGTTAT-TAAATATTTATTTAAATTAAATTAATTTAAATTT
1 AAATATTATTGTTATATAAATATTTATTTAAATT-AATTAATTTAAATTT
2218757 AAA
1 AAA
2218760 AAATATTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
48 5 0.11
49 24 0.52
50 17 0.37
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (49 bp):
AAATATTATTGTTATATAAATATTTATTTAAATTAATTAATTTAAATTT
Found at i:2218771 original size:15 final size:15
Alignment explanation
Indices: 2218724--2218775 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 15
2218714 TATTGTTATT
2218724 AAATATTTATTTAAA
1 AAATATTTATTTAAA
2218739 TTAAATTAATTTAAATTTAAA
1 --AAA-T-ATTT--ATTTAAA
2218760 AAATATTTATTTAAA
1 AAATATTTATTTAAA
2218775 A
1 A
2218776 TTTAATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 8 0.26
17 7 0.23
18 2 0.06
19 7 0.23
21 7 0.23
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AAATATTTATTTAAA
Found at i:2218801 original size:37 final size:37
Alignment explanation
Indices: 2218723--2218801 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 37
2218713 TTATTGTTAT
* *
2218723 TAAATATTTATTTAAATTAAATTAATTTAAATTTAAA
1 TAAATATTTATTTAAATTAAATTAATATAAATTCAAA
*
2218760 -AAATATTTATTTAAAATTTAA-TATATATAAA-TCAAA
1 TAAATATTTATTT-AAATTAAATTA-ATATAAATTCAAA
2218796 TAAATA
1 TAAATA
2218802 AAATCTGACC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
36 18 0.50
37 18 0.50
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (37 bp):
TAAATATTTATTTAAATTAAATTAATATAAATTCAAA
Found at i:2219514 original size:15 final size:16
Alignment explanation
Indices: 2219494--2219535 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
2219484 ATATTTTTTA
2219494 TTAATTTTAATT-GAT
1 TTAATTTTAATTAGAT
* *
2219509 TTAATTTGAATTATAT
1 TTAATTTTAATTAGAT
2219525 TTAATATTTAA
1 TTAAT-TTTAA
2219536 AAAAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 11 0.50
16 7 0.32
17 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (16 bp):
TTAATTTTAATTAGAT
Found at i:2219575 original size:20 final size:17
Alignment explanation
Indices: 2219545--2219584 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
2219535 AAAAAATATT
2219545 TAAATTTAATTATAAAATA
1 TAAATTTAATT-TAAAA-A
2219564 TAAATATTAATTTAAAAA
1 TAAAT-TTAATTTAAAAA
2219582 TAA
1 TAA
2219585 TTTTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 10 0.50
20 6 0.30
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATTTAATTTAAAAA
Found at i:2220185 original size:13 final size:13
Alignment explanation
Indices: 2220160--2220210 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
2220150 ATAAGAATTT
2220160 AATTT-TTTATTTA
1 AATTTATTT-TTTA
2220173 AATTTATTTTTTA
1 AATTTATTTTTTA
2220186 AATTTAATATTTTTA
1 AATTT-AT-TTTTTA
*
2220201 AAATTATTTT
1 AATTTATTTT
2220211 AAATATCTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
13 17 0.50
14 7 0.21
15 10 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
AATTTATTTTTTA
Found at i:2220536 original size:15 final size:16
Alignment explanation
Indices: 2220518--2220552 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
2220508 TGTAAATATA
*
2220518 ATAAATATTATTA-CG
1 ATAAATATTAATATCG
2220533 ATAAATATTAATATCG
1 ATAAATATTAATATCG
2220549 ATAA
1 ATAA
2220553 TAAAAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (16 bp):
ATAAATATTAATATCG
Found at i:2220656 original size:17 final size:19
Alignment explanation
Indices: 2220636--2220676 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
2220626 GTGTAAGTTT
2220636 TTATTA-TCTTTTAAA-AA
1 TTATTATTCTTTTAAATAA
* *
2220653 TTATAATTTTTTTAAATAA
1 TTATTATTCTTTTAAATAA
2220672 TTATT
1 TTATT
2220677 TAATGGGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
17 5 0.26
18 8 0.42
19 6 0.32
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (19 bp):
TTATTATTCTTTTAAATAA
Found at i:2221365 original size:20 final size:21
Alignment explanation
Indices: 2221312--2221376 Score: 55
Period size: 20 Copynumber: 3.1 Consensus size: 21
2221302 AACTTGAACA
* *
2221312 AATATTTTATCAATTTCAAA-T
1 AATATTTAAT-AATTTAAAATT
*
2221333 AAT-TTTATTTAATTT-AAATT
1 AATATTTA-ATAATTTAAAATT
2221353 AATATTTAATAATTATAAAATT
1 AATATTTAATAATT-TAAAATT
2221375 AA
1 AA
2221377 AATTAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
19 3 0.08
20 17 0.47
21 9 0.25
22 7 0.19
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (21 bp):
AATATTTAATAATTTAAAATT
Found at i:2221394 original size:24 final size:24
Alignment explanation
Indices: 2221339--2221397 Score: 72
Period size: 22 Copynumber: 2.6 Consensus size: 24
2221329 AAATAATTTT
* *
2221339 ATTTAATT-T-AAATTAATATTTA
1 ATTTAATTATAAAATTAAAATTAA
2221361 A--TAATTATAAAATTAAAATTAA
1 ATTTAATTATAAAATTAAAATTAA
2221383 ATTTAATTATAAAAT
1 ATTTAATTATAAAAT
2221398 ATATAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 1 0.03
22 13 0.42
24 12 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTTAATTATAAAATTAAAATTAA
Found at i:2221420 original size:22 final size:21
Alignment explanation
Indices: 2221362--2221417 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 21
2221352 TAATATTTAA
*
2221362 TAATTATAAAATTAAAATTAAATT
1 TAATTATAAAA-T-ATA-TAAATT
2221386 TAATTATAAAATATATAAATAT
1 TAATTATAAAATATATAAAT-T
2221408 TAA-TATAAAA
1 TAATTATAAAA
2221418 ATAATTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 12 0.40
22 6 0.20
23 1 0.03
24 11 0.37
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TAATTATAAAATATATAAATT
Found at i:2222641 original size:19 final size:17
Alignment explanation
Indices: 2222609--2222648 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
2222599 ATATTATTAT
2222609 AATTAAATTTAAATAAA
1 AATTAAATTTAAATAAA
*
2222626 AATTAAATTATTAAATAAT
1 AATTAAA-T-TTAAATAAA
2222645 AATT
1 AATT
2222649 TAAAATTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 1 0.05
19 12 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AATTAAATTTAAATAAA
Found at i:2222649 original size:31 final size:30
Alignment explanation
Indices: 2222601--2222671 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
2222591 TAATATTTAT
*
2222601 ATTATTATAATTAAATTT-AAATAAAAATTAA
1 ATTATTA-AATAAAATTTAAAAT-AAAATTAA
* *
2222632 ATTATTAAATAATAATTTAAAATTAACTTAA
1 ATTATTAAATAA-AATTTAAAATAAAATTAA
2222663 ATTATTAAA
1 ATTATTAAA
2222672 ATTTGTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.11
31 27 0.77
32 4 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (30 bp):
ATTATTAAATAAAATTTAAAATAAAATTAA
Found at i:2223670 original size:2 final size:2
Alignment explanation
Indices: 2223625--2223657 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2223615 TGTGTGTGTG
2223625 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2223658 TTTTTTTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2227832 original size:2 final size:2
Alignment explanation
Indices: 2227825--2227853 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2227815 TGAACAGTAA
2227825 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
2227854 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:2228068 original size:17 final size:17
Alignment explanation
Indices: 2228046--2228079 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2228036 GTCATTTATT
2228046 GGCTTGAACCTTTGTAA
1 GGCTTGAACCTTTGTAA
2228063 GGCTTGAACCTTTGTAA
1 GGCTTGAACCTTTGTAA
2228080 AGCTAGAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (17 bp):
GGCTTGAACCTTTGTAA
Found at i:2228088 original size:17 final size:17
Alignment explanation
Indices: 2228051--2228088 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
2228041 TTATTGGCTT
* *
2228051 GAACCTTTGTAAGGCTT
1 GAACCTTTGTAAAGCTA
2228068 GAACCTTTGTAAAGCTA
1 GAACCTTTGTAAAGCTA
2228085 GAAC
1 GAAC
2228089 ATGCATGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (17 bp):
GAACCTTTGTAAAGCTA
Found at i:2228147 original size:15 final size:16
Alignment explanation
Indices: 2228127--2228159 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
2228117 AAATATTAAA
*
2228127 ATTAAATTTGATA-AT
1 ATTAAATATGATATAT
2228142 ATTAAATATGATATAT
1 ATTAAATATGATATAT
2228158 AT
1 AT
2228160 GTAATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
ATTAAATATGATATAT
Found at i:2228274 original size:16 final size:16
Alignment explanation
Indices: 2228230--2228279 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 16
2228220 TATATAATAT
2228230 AAATTATTAATATATAA
1 AAATTATTAA-ATATAA
2228247 AAATTATATAAATATAA
1 AAATTAT-TAAATATAA
2228264 AATATT-TTAAATATAA
1 AA-ATTATTAAATATAA
2228280 TTATAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 9 0.29
17 16 0.52
18 6 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTATTAAATATAA
Found at i:2228278 original size:24 final size:25
Alignment explanation
Indices: 2228216--2228307 Score: 68
Period size: 26 Copynumber: 3.6 Consensus size: 25
2228206 AATATTTTAA
2228216 AATTTATATAATATAAATTATTAATATAT
1 AATTTA-AT-ATATAAA-TA-TAATATAT
*
2228245 AA--AAATTATATAAATATAA-A-AT
1 AATTTAA-TATATAAATATAATATAT
* *
2228267 ATTTTAA-ATATAATTATAATATAT
1 AATTTAATATATAAATATAATATAT
2228291 AATTTAAATATATAAAT
1 AATTT-AATATATAAAT
2228308 TGTTAAATCC
Statistics
Matches: 50, Mismatches: 6, Indels: 17
0.68 0.08 0.23
Matches are distributed among these distances:
22 14 0.28
23 2 0.04
24 11 0.22
25 4 0.08
26 15 0.30
27 2 0.04
29 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AATTTAATATATAAATATAATATAT
Found at i:2228301 original size:11 final size:11
Alignment explanation
Indices: 2228269--2228302 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 11
2228259 TATAAAATAT
2228269 TTTAAATATAA
1 TTTAAATATAA
2228280 TTATAATATATAA
1 TT-TAA-ATATAA
2228293 TTTAAATATA
1 TTTAAATATA
2228303 TAAATTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 7 0.33
12 6 0.29
13 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TTTAAATATAA
Found at i:2228304 original size:59 final size:56
Alignment explanation
Indices: 2228198--2228306 Score: 141
Period size: 59 Copynumber: 1.9 Consensus size: 56
2228188 ATATGAAAAA
* *
2228198 ATAAAATAAATATTTTAAAATTTATATAATATAAATTATTAATATATAAAAATTAT
1 ATAAAATAAATATTTTAAAATATATATAATATAAATTATAAATATATAAAAATTAT
2228254 ATAAATATAAAATATTTT-AAATATAATTATAATATATAATT-TAAATATATAAA
1 ATAAA-AT-AAATATTTTAAAATAT-A-TATAATATA-AATTATAAATATATAAA
2228307 TTGTTAAATC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
56 5 0.11
57 7 0.15
58 10 0.22
59 20 0.43
60 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (56 bp):
ATAAAATAAATATTTTAAAATATATATAATATAAATTATAAATATATAAAAATTAT
Found at i:2228715 original size:13 final size:13
Alignment explanation
Indices: 2228699--2228723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2228689 TAAAATTATA
2228699 AAAATTTAAATTT
1 AAAATTTAAATTT
2228712 AAAATTTAAATT
1 AAAATTTAAATT
2228724 GATTAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAATTTAAATTT
Found at i:2231255 original size:15 final size:15
Alignment explanation
Indices: 2231235--2231268 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
2231225 CAGATATGAG
2231235 TATTAAATATAAATA
1 TATTAAATATAAATA
*
2231250 TATTAAATATTAATA
1 TATTAAATATAAATA
2231265 TATT
1 TATT
2231269 TAATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAAATATAAATA
Found at i:2231797 original size:14 final size:15
Alignment explanation
Indices: 2231752--2231799 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
2231742 TTTTATTTTA
*
2231752 TTTTCATAAATAAGT
1 TTTTTATAAATAAGT
2231767 TTTTTATAAA-ATA-T
1 TTTTTATAAATA-AGT
2231781 TTTTTA-AAATAAGT
1 TTTTTATAAATAAGT
2231795 TTTTT
1 TTTTT
2231800 TAACGAATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 4 0.14
14 15 0.52
15 10 0.34
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (15 bp):
TTTTTATAAATAAGT
Found at i:2231800 original size:15 final size:15
Alignment explanation
Indices: 2231759--2231802 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
2231749 TTATTTTCAT
2231759 AAATAAGTTTTTTATA
1 AAATAAGTTTTTT-TA
2231775 AAAT-A--TTTTTTA
1 AAATAAGTTTTTTTA
2231787 AAATAAGTTTTTTTA
1 AAATAAGTTTTTTTA
2231802 A
1 A
2231803 CGAATACGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 6 0.24
13 6 0.24
15 9 0.36
16 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (15 bp):
AAATAAGTTTTTTTA
Found at i:2232021 original size:20 final size:22
Alignment explanation
Indices: 2231965--2232021 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
2231955 TTTTTTAATA
* *
2231965 AAAATAATATTTAATTAACTTT
1 AAAATATTAATTAATTAACTTT
*
2231987 AAAAAATTTATATTAA-TAA-TTT
1 AAAATA-TTA-ATTAATTAACTTT
2232009 AAAATATTAATTA
1 AAAATATTAATTA
2232022 TTTTTAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
20 4 0.14
21 3 0.10
22 13 0.45
23 5 0.17
24 4 0.14
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATATTAATTAATTAACTTT
Found at i:2232235 original size:109 final size:110
Alignment explanation
Indices: 2231961--2232238 Score: 359
Period size: 117 Copynumber: 2.5 Consensus size: 110
2231951 ATTATTTTTT
* *
2231961 AATAAAAATAATATTTAATTAACTTT-AAAAAATTTATATTAATAATTTAAAATATTAATTATTT
1 AATAAAAATAATATTTAATTAAATTTAAAAAAATTTACATTAATAA-TTAAAATATTAATTATTT
*
2232025 TTAAAATAAAAAATTAAATTAAAAAGGATTTATTATTATTATTTTTTAATAA
65 TT---AT---AAATTAAAATAAAAAGGATTTATTATTATTATTTTTTAATAA
*
2232077 AATTAAAAATAATATTTAATTAAATTTAAAAAAA-TTACATTAACAAATTAAAATATTAATTATA
1 AA-TAAAAATAATATTTAATTAAATTTAAAAAAATTTACATTAA-TAATTAAAATATTAATTAT-
* *
2232141 TATTT-T-TA-TAAAATAAAAAGTATTTATTATTATTATTTTTTAATAA
63 T-TTTATAAATTAAAATAAAAAGGATTTATTATTATTATTTTTTAATAA
*
2232187 AATAAAAATAATATTTAATTAAATTTAAAAAAATTTACATTGATAATTAAAA
1 AATAAAAATAATATTTAATTAAATTTAAAAAAATTTACATTAATAATTAAAA
2232239 AAAAAACATT
Statistics
Matches: 148, Mismatches: 8, Indels: 19
0.85 0.05 0.11
Matches are distributed among these distances:
109 39 0.26
110 46 0.31
111 1 0.01
115 1 0.01
116 2 0.01
117 47 0.32
118 9 0.06
119 3 0.02
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (110 bp):
AATAAAAATAATATTTAATTAAATTTAAAAAAATTTACATTAATAATTAAAATATTAATTATTTT
TATAAATTAAAATAAAAAGGATTTATTATTATTATTTTTTAATAA
Found at i:2232587 original size:14 final size:14
Alignment explanation
Indices: 2232568--2232599 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
2232558 TTATAATAAA
2232568 AAAATTTTTAATTT
1 AAAATTTTTAATTT
*
2232582 AAAATTTTTATTTT
1 AAAATTTTTAATTT
2232596 AAAA
1 AAAA
2232600 ACATAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
AAAATTTTTAATTT
Found at i:2232746 original size:120 final size:120
Alignment explanation
Indices: 2232557--2232907 Score: 432
Period size: 120 Copynumber: 2.9 Consensus size: 120
2232547 AAAAAATATT
* * * *
2232557 ATTATAATAAAAAAATTTTTAATTTAAAATTTTTA-TTTTAAAAACATAATAATTAATATTTTAA
1 ATTATAATAAAAAACTTTTT-TTTTTAATTTTTTATTTTTAAAAACATAATAATTAATATTTTAA
* *
2232621 TTTGTTAATGTAAATTTTTATACTTAATTAAATATTATTTTTTATTTTATT-AAAA
65 TTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAA
2232676 ATTATAATAAAAAACTTTTTTTTTTAATTTTTTATTTTTATAAAAACATAATAATTAA-ATTTTA
1 ATTATAATAAAAAACTTTTTTTTTTAATTTTTTA-TTTT-TAAAAACATAATAATTAATATTTTA
*
2232740 ATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAA
64 ATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAA
* * *
2232797 ATAACAATAATAAACCTCTTTTATTTTATTTAATTTTTTAATTTTT--AAA-A-AATAATTAATA
1 ATTATAATAA-AAA--AC-TTT-TTTT-TTTAATTTTTT-ATTTTTAAAAACATAATAATTAATA
* * *
2232858 TTTTAATTTGTTAATAT-ATTTTTTAAAGTTAATT-ACTATTATTTTTTATT
59 TTTTAATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTTATT
2232908 AAAATAATAA
Statistics
Matches: 206, Mismatches: 14, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
118 11 0.05
119 19 0.09
120 58 0.28
121 44 0.21
122 28 0.14
123 18 0.09
124 4 0.02
125 3 0.01
126 5 0.02
127 15 0.07
128 1 0.00
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.54
Consensus pattern (120 bp):
ATTATAATAAAAAACTTTTTTTTTTAATTTTTTATTTTTAAAAACATAATAATTAATATTTTAAT
TTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAA
Found at i:2232937 original size:25 final size:22
Alignment explanation
Indices: 2232868--2232950 Score: 62
Period size: 28 Copynumber: 3.5 Consensus size: 22
2232858 TTTTAATTTG
2232868 TTAATA-TATTTTTTAAAGTTAA
1 TTAATATTATTTTTTAAA-TTAA
*
2232890 TTACTATTATTTTTTATTAAAATAATAA
1 TTAATATTA--TTTT-TT-AAAT--TAA
2232918 TTAATATTATTATTTTAAATTTAA
1 TTAATATTATT-TTTTAAA-TTAA
2232942 TTAAT-TTAT
1 TTAATATTAT
2232951 AAAAAACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
22 5 0.10
23 6 0.12
24 8 0.16
25 7 0.14
26 8 0.16
27 5 0.10
28 11 0.22
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (22 bp):
TTAATATTATTTTTTAAATTAA
Found at i:2235990 original size:20 final size:20
Alignment explanation
Indices: 2235962--2236036 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
2235952 TCATACCCTG
2235962 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
2235982 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
2236002 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
2236022 ATGTATCGATACATT
1 ATGTATCGATACATT
2236037 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2236029 original size:40 final size:39
Alignment explanation
Indices: 2235962--2236039 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
2235952 TCATACCCTG
* *
2235962 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
2236002 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
2236040 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:2236974 original size:22 final size:22
Alignment explanation
Indices: 2236947--2237000 Score: 101
Period size: 21 Copynumber: 2.5 Consensus size: 22
2236937 AGCCTTTGAC
2236947 CATGCATTTTTTTATTATGTTT
1 CATGCATTTTTTTATTATGTTT
2236969 CATGCA-TTTTTTATTATGTTT
1 CATGCATTTTTTTATTATGTTT
2236990 CATGCATTTTT
1 CATGCATTTTT
2237001 AACATGTCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.68
22 10 0.32
ACGTcount: A:0.19, C:0.11, G:0.09, T:0.61
Consensus pattern (22 bp):
CATGCATTTTTTTATTATGTTT
Found at i:2237007 original size:20 final size:21
Alignment explanation
Indices: 2236947--2237007 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
2236937 AGCCTTTGAC
**
2236947 CATGCATTTTTTTATTATGTTT
1 CATGCA-TTTTTTAACATGTTT
**
2236969 CATGCATTTTTTATTATGTTT
1 CATGCATTTTTTAACATGTTT
2236990 CATGCA-TTTTTAACATGT
1 CATGCATTTTTTAACATGT
2237008 CCAGCATCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.27
21 21 0.57
22 6 0.16
ACGTcount: A:0.21, C:0.11, G:0.10, T:0.57
Consensus pattern (21 bp):
CATGCATTTTTTAACATGTTT
Found at i:2244614 original size:27 final size:27
Alignment explanation
Indices: 2244509--2245185 Score: 850
Period size: 27 Copynumber: 24.5 Consensus size: 27
2244499 TGGCATTTCT
*
2244509 TTTTGAAGTCCACAACTCCGTGGC-TCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
2244536 -TTTAAGT-CACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2244560 TTTTAAAGTCCACCAACTCCGTGGCACCC
1 TTTT-AAGTCCA-CAACTCCGTGGCACCC
*
2244589 TTTTAAGTCCACAACTCCGTGACACCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
** *
2244617 TTCAAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2244644 TTTTAAATCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2244671 TTTTAAGTCCACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* * *
2244697 TTTCAAAGTCCACAACTCAGTGGTACCC
1 TTT-TAAGTCCACAACTCCGTGGCACCC
* * *
2244725 TTTTAAGTCCACAACTCCCGTTAGCGCTC
1 TTTTAAGTCCACAACT-CCG-TGGCACCC
2244754 TTTTACAGTCCACAACTCCGTGGCACCCC
1 TTTTA-AGTCCACAACTCCGTGGCA-CCC
2244783 TCTTTAAGTCCACAACTCCGTGGCACCC
1 T-TTTAAGTCCACAACTCCGTGGCACCC
2244811 TTTTAAGTCCACAACCTCCGTGGCACCC
1 TTTTAAGTCCACAA-CTCCGTGGCACCC
2244839 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
*
2244867 TTTTAAGTCCACAACTCCGTGGCATTCTC
1 TTTTAAGTCCACAACTCCGTGGCA--CCC
2244896 TTTTAAGTCCAC-ACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* **
2244922 TTTTTAAGTCCATAACTTTGTGGCACCC
1 -TTTTAAGTCCACAACTCCGTGGCACCC
*
2244950 TTTTAAGTCCACAACTCCCGTGGCACCT
1 TTTTAAGTCCACAACT-CCGTGGCACCC
*
2244978 TTTTAAAGTCCACAACTCCGTGGCACTC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
2245006 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2245033 TTTTAAGTCCACAACTCCGTTGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2245060 TTTTAAGTCCACAACT-CGTGGCATCTCC
1 TTTTAAGTCCACAACTCCGTGGCA-C-CC
* *
2245088 TTTTAAGAACCACAACTCTGTGGCACCC
1 TTTTAAG-TCCACAACTCCGTGGCACCC
2245116 TCTTTAAGGTCCAC-ACTCCGTGGCACCC
1 T-TTTAA-GTCCACAACTCCGTGGCACCC
*
2245144 TTTTTTAAGTCCACAACTCCGTGG-ATCC
1 --TTTTAAGTCCACAACTCCGTGGCACCC
*
2245172 TTTTAAGCCCACAA
1 TTTTAAGTCCACAA
2245186 AGTCAGTTGC
Statistics
Matches: 575, Mismatches: 45, Indels: 61
0.84 0.07 0.09
Matches are distributed among these distances:
24 15 0.03
25 7 0.01
26 33 0.06
27 205 0.36
28 193 0.34
29 99 0.17
30 23 0.04
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.28
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:2244655 original size:83 final size:82
Alignment explanation
Indices: 2244509--2245185 Score: 833
Period size: 83 Copynumber: 8.2 Consensus size: 82
2244499 TGGCATTTCT
* *
2244509 TTTTGAAGTCCACAACTCCGTGG--CTCC-TTTAAGT-CACAACTCTGTGGCA-CCTTTTAAAGT
1 TTTT-AAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
2244569 CCACCAACTCCGTGGCACCC
64 CCA-CAACTCCGTGGCACCC
* ** * *
2244589 TTTTAAGTCCACAACTCCGTGACACCCCTTCAAAGTCCACAACTCCGTGGCACTCTTTTAAATCC
1 TTTTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
2244654 ACAACTCCGTGGCACCC
66 ACAACTCCGTGGCACCC
* * * *
2244671 TTTTAAGTCCACAACTCTGTGGCA--CCTTTCAAAGTCCACAACTCAGTGGTACCCTTTTAAGTC
1 TTTTAAGTCCACAACTCCGTGGCACCCCTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* * *
2244734 CACAACTCCCGTTAGCGCTC
65 CACAACT-CCG-TGGCACCC
2244754 TTTTACAGTCCACAACTCCGTGGCACCCCTCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
1 TTTTA-AGTCCACAACTCCGTGGCACCCCT-TTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
2244819 CCACAACCTCCGTGGCACCC
64 CCACAA-CTCCGTGGCACCC
* *
2244839 TTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCATTCTCTTTTAAGT
1 TTTTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGGCA--CCCTTTTAAGT
2244904 CCAC-ACTCCGTGGCACCC
64 CCACAACTCCGTGGCACCC
* ** *
2244922 TTTTTAAGTCCATAACTTTGTGGCA-CCCTTTTAAGTCCACAACTCCCGTGGCACCTTTTTAAAG
1 -TTTTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACT-CCGTGGCACCCTTTT-AAG
*
2244986 TCCACAACTCCGTGGCACTC
63 TCCACAACTCCGTGGCACCC
*
2245006 TTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTTGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
2245070 ACAACT-CGTGGCATCTCC
66 ACAACTCCGTGGCA-C-CC
* *
2245088 TTTTAAGAACCACAACTCTGTGGCA-CCCTCTTTAAGGTCCAC-ACTCCGTGGCACCCTTTTTTA
1 TTTTAAG-TCCACAACTCCGTGGCACCCCT-TTTAA-GTCCACAACTCCGTGGCACCC--TTTTA
*
2245151 AGTCCACAACTCCGTGG-ATCC
61 AGTCCACAACTCCGTGGCACCC
*
2245172 TTTTAAGCCCACAA
1 TTTTAAGTCCACAA
2245186 AGTCAGTTGC
Statistics
Matches: 527, Mismatches: 43, Indels: 51
0.85 0.07 0.08
Matches are distributed among these distances:
79 17 0.03
80 15 0.03
81 52 0.10
82 72 0.14
83 158 0.30
84 116 0.22
85 30 0.06
86 58 0.11
87 9 0.02
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.28
Consensus pattern (82 bp):
TTTTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACCC
Found at i:2245372 original size:32 final size:32
Alignment explanation
Indices: 2245308--2246118 Score: 718
Period size: 32 Copynumber: 24.8 Consensus size: 32
2245298 GGTTTGGCCA
2245308 AACCC-TTCCAAAAGCCCCACACAAGCTCGGTGG-
1 AACCCATTCC-AAAG-CCCACACAAG-TCGGTGGC
*
2245341 AACCCATTCCAAAGCCAACACAAGTCGGGTGGCC
1 AACCCATTCCAAAGCCCACACAAGTC-GGTGG-C
*
2245375 AA-CCATTTCAAAGCCCACACAAGTCGGTGGC
1 AACCCATTCCAAAGCCCACACAAGTCGGTGGC
*
2245406 AACACCATTTCAAAGCCCCACACAAAGTTCGGTTGGC
1 AAC-CCATTCCAAAG-CCCACAC-AAG-TCGG-TGGC
* * * *
2245443 AACCTATTTC-AAGCCAACACAAGTATGGT-G-
1 AACCCATTCCAAAGCCCACACAAGT-CGGTGGC
** *
2245473 AACATATTTCAAA-CCCACACAAGTCGGTGGC
1 AACCCATTCCAAAGCCCACACAAGTCGGTGGC
* *
2245504 -ACCCATTCCAATAG-ACACACAAGTAGGTGGC
1 AACCCATTCCAA-AGCCCACACAAGTCGGTGGC
2245535 AACCCATTCCAAAGCCCACACAAGTCGGTGGC
1 AACCCATTCCAAAGCCCACACAAGTCGGTGGC
2245567 AACCCATTCCAAAGCCCACACAAGTCGGGTGGC
1 AACCCATTCCAAAGCCCACACAAGTC-GGTGGC
*
2245600 AACCTCATTTCAAAAGCCCACAC-AGTCGGTGGC
1 AACC-CA-TTCCAAAGCCCACACAAGTCGGTGGC
*
2245633 AACCCATTTCAAAGCCCACACAAGTCGGTGGC
1 AACCCATTCCAAAGCCCACACAAGTCGGTGGC
2245665 AACCC-TTCCAAAGGCCCACACAAGTCGGTGG-
1 AACCCATTCCAAA-GCCCACACAAGTCGGTGGC
** *
2245696 AACCCATTCCAAAGCCACACACAAAAAC-GT-TC
1 AACCCATTCCAAAGCC-CACAC-AAGTCGGTGGC
* ** ** * *****
2245728 ATCCACAACCCCAAAATGGAAACACGCAA--CACACCC
1 AACC-C-ATTCC-AAA--G-CCCACACAAGTCGGTGGC
** *
2245764 CCCCCATTTCAAAGCCC-CACAAGTCGGTGGGC
1 AACCCATTCCAAAGCCCACACAAGTCGGT-GGC
2245796 AACCCATTCCAAAGCCCCACACAAGTCTCGGTGGC
1 AACCCATTCCAAAG-CCCACACAAG--TCGGTGGC
*
2245831 AACCCATTCCACCAGCCCACACAACGTCGGTTGGC
1 AACCCATTCCA-AAGCCCACACAA-GTCGG-TGGC
2245866 AA-CCATTCC-AAGCCCACCACAAGTCGGTGGC
1 AACCCATTCCAAAGCCCA-CACAAGTCGGTGGC
2245897 AACCCATTCCAAAGCCCA-ACAAACGTCGGTGGC
1 AACCCATTCCAAAGCCCACAC-AA-GTCGGTGGC
* **
2245930 AACTCATTCC-ACTCCCACACAAGTCGGTGGC
1 AACCCATTCCAAAGCCCACACAAGTCGGTGGC
2245961 AAACCCATTCCAAAGCCCACACAAGTCCTGGTGGGC
1 -AACCCATTCCAAAGCCCACACAAGT-C-GGT-GGC
2245997 AACCCATTCCAAAGCCCACACCAAGTCCGGTGGC
1 AACCCATTCCAAAGCCCACA-CAAGT-CGGTGGC
* *
2246031 AACCCATTCCAAAGCCCCCAC-AGTCGG-GGAA
1 AACCCATTCCAAAGCCCACACAAGTCGGTGG-C
*
2246062 AACCCATTTC-AAGCCCACACAAAGTCGGTGGC
1 AACCCATTCCAAAGCCCACAC-AAGTCGGTGGC
*
2246094 AACCCATTCC-ACGCCCACACAAGTC
1 AACCCATTCCAAAGCCCACACAAGTC
2246119 TTGCTTGCTC
Statistics
Matches: 654, Mismatches: 63, Indels: 124
0.78 0.07 0.15
Matches are distributed among these distances:
29 7 0.01
30 40 0.06
31 89 0.14
32 200 0.31
33 123 0.19
34 71 0.11
35 79 0.12
36 33 0.05
37 12 0.02
ACGTcount: A:0.32, C:0.36, G:0.17, T:0.14
Consensus pattern (32 bp):
AACCCATTCCAAAGCCCACACAAGTCGGTGGC
Found at i:2245414 original size:66 final size:64
Alignment explanation
Indices: 2245308--2246275 Score: 786
Period size: 65 Copynumber: 14.6 Consensus size: 64
2245298 GGTTTGGCCA
*
2245308 AACCC-TTCCAAAAGCCCCACACAAGCTCGGTGG-AACCCATTCCAAAGCCAACACAAGTCGGGT
1 AACCCATTCC-AAAG-CCCACACAAG-TCGGTGGCAACCCATTCCAAAGCCCACACAAGTC-GGT
2245371 GGCC
62 GG-C
* *
2245375 AA-CCATTTCAAAGCCCACACAAGTCGGTGGCAACACCATTTCAAAGCCCCACACAAAGTTCGGT
1 AACCCATTCCAAAGCCCACACAAGTCGGTGGCAAC-CCATTCCAAAG-CCCACAC-AAG-TCGG-
2245439 TGGC
61 TGGC
* * * * ** *
2245443 AACCTATTTC-AAGCCAACACAAGTATGGT-G-AACATATTTCAAA-CCCACACAAGTCGGTGGC
1 AACCCATTCCAAAGCCCACACAAGT-CGGTGGCAACCCATTCCAAAGCCCACACAAGTCGGTGGC
* *
2245504 -ACCCATTCCAATAG-ACACACAAGTAGGTGGCAACCCATTCCAAAGCCCACACAAGTCGGTGGC
1 AACCCATTCCAA-AGCCCACACAAGTCGGTGGCAACCCATTCCAAAGCCCACACAAGTCGGTGGC
*
2245567 AACCCATTCCAAAGCCCACACAAGTCGGGTGGCAACCTCATTTCAAAAGCCCACAC-AGTCGGTG
1 AACCCATTCCAAAGCCCACACAAGTC-GGTGGCAACC-CA-TTCCAAAGCCCACACAAGTCGGTG
2245631 GC
63 GC
*
2245633 AACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCC-TTCCAAAGGCCCACACAAGTCGGTGG-
1 AACCCATTCCAAAGCCCACACAAGTCGGTGGCAACCCATTCCAAA-GCCCACACAAGTCGGTGGC
** * * ** ** *
2245696 AACCCATTCCAAAGCCACACACAAAAAC-GT-TCATCCACAACCCCAAAATGGAAACACGCAA--
1 AACCCATTCCAAAGCC-CACAC-AAGTCGGTGGCAACC-C-ATTCC-AAA--G-CCCACACAAGT
*****
2245757 CACACCC
58 CGGTGGC
** *
2245764 CCCCCATTTCAAAGCCC-CACAAGTCGGTGGGCAACCCATTCCAAAGCCCCACACAAGTCTCGGT
1 AACCCATTCCAAAGCCCACACAAGTCGGT-GGCAACCCATTCCAAAG-CCCACACAAG--TCGGT
2245828 GGC
62 GGC
*
2245831 AACCCATTCCACCAGCCCACACAACGTCGGTTGGCAA-CCATTCC-AAGCCCACCACAAGTCGGT
1 AACCCATTCCA-AAGCCCACACAA-GTCGG-TGGCAACCCATTCCAAAGCCCA-CACAAGTCGGT
2245894 GGC
62 GGC
* **
2245897 AACCCATTCCAAAGCCCA-ACAAACGTCGGTGGCAACTCATTCC-ACTCCCACACAAGTCGGTGG
1 AACCCATTCCAAAGCCCACAC-AA-GTCGGTGGCAACCCATTCCAAAGCCCACACAAGTCGGTGG
2245960 C
64 C
2245961 AAACCCATTCCAAAGCCCACACAAGTCCTGGTGGGCAACCCATTCCAAAGCCCACACCAAGTCCG
1 -AACCCATTCCAAAGCCCACACAAGT-C-GGT-GGCAACCCATTCCAAAGCCCACA-CAAGT-CG
2246026 GTGGC
60 GTGGC
* * *
2246031 AACCCATTCCAAAGCCCCCAC-AGTCGG-GGAAAACCCATTTC-AAGCCCACACAAAGTCGGTGG
1 AACCCATTCCAAAGCCCACACAAGTCGGTGG-CAACCCATTCCAAAGCCCACAC-AAGTCGGTGG
2246093 C
64 C
* * *
2246094 AACCCATTCC-ACGCCCACACAAGTCTTGCTTGCTCCGGTGGCCACCCATTTCAAAGCCCACACA
1 AACCCATTCCAAAGCCCACACAA---------G-T-CGGTGGCAACCCATTCCAAAGCCCACAC-
2246158 AAGTC-G-GGC
54 AAGTCGGTGGC
* * *
2246167 AACCCATTTCAAA-CCCTACACACGTCGGGGTGGCAACCCATTCCAAAGCCCACCCAAGTCGGTG
1 AACCCATTCCAAAGCCC-ACACAAGTC--GGTGGCAACCCATTCCAAAGCCCACACAAGTCGGTG
2246231 GC
63 GC
* *
2246233 AACTCATTTTCAAAGCCCACACAAGTCTGGTGGCAAACCCATT
1 AACCCA-TTCCAAAGCCCACACAAGTC-GGTGGC-AACCCATT
2246276 TAAAAGCTAT
Statistics
Matches: 743, Mismatches: 81, Indels: 154
0.76 0.08 0.16
Matches are distributed among these distances:
60 10 0.01
61 14 0.02
62 30 0.04
63 77 0.10
64 97 0.13
65 123 0.17
66 111 0.15
67 84 0.11
68 68 0.09
69 57 0.08
70 17 0.02
71 1 0.00
72 1 0.00
73 16 0.02
74 19 0.03
75 18 0.02
ACGTcount: A:0.31, C:0.36, G:0.18, T:0.15
Consensus pattern (64 bp):
AACCCATTCCAAAGCCCACACAAGTCGGTGGCAACCCATTCCAAAGCCCACACAAGTCGGTGGC
Found at i:2246141 original size:105 final size:107
Alignment explanation
Indices: 2246022--2246226 Score: 267
Period size: 105 Copynumber: 1.9 Consensus size: 107
2246012 CCACACCAAG
* *
2246022 TCCGGTGGCAACCCATTCCAAAGCCC-C-CACAGTCGGGGAAAACCCATTTCAAGCCC-ACACAA
1 TCCGGTGGCAACCCATTCCAAAGCCCACACAAAGTC-GGG-AAACCCATTTCAAACCCTACAC-A
*
2246084 AGTC-GGTGGCAACCCATTCC-ACGCCCACACAAGTCTTGCTTGC
63 AGTCGGGTGGCAACCCATTCCAAAGCCCACACAAGTCTTGCTTGC
* * * *
2246127 TCCGGTGGCCACCCATTTCAAAGCCCACACAAAGTCGGGCAACCCATTTCAAACCCTACACACGT
1 TCCGGTGGCAACCCATTCCAAAGCCCACACAAAGTCGGGAAACCCATTTCAAACCCTACACAAGT
*
2246192 CGGGGTGGCAACCCATTCCAAAGCCCACCCAAGTC
66 C-GGGTGGCAACCCATTCCAAAGCCCACACAAGTC
2246227 GGTGGCAACT
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
105 43 0.50
106 8 0.09
107 22 0.26
108 13 0.15
ACGTcount: A:0.27, C:0.39, G:0.19, T:0.16
Consensus pattern (107 bp):
TCCGGTGGCAACCCATTCCAAAGCCCACACAAAGTCGGGAAACCCATTTCAAACCCTACACAAGT
CGGGTGGCAACCCATTCCAAAGCCCACACAAGTCTTGCTTGC
Found at i:2246251 original size:33 final size:32
Alignment explanation
Indices: 2246129--2246282 Score: 170
Period size: 34 Copynumber: 4.7 Consensus size: 32
2246119 TTGCTTGCTC
*
2246129 CGGTGGCCACCCATTTCAAAGCCCACACAAAGT
1 CGGTGGCAACCCATTTCAAAGCCCACAC-AAGT
*
2246162 C-G-GGCAACCCATTTCAAA-CCCTACACACGT
1 CGGTGGCAACCCATTTCAAAGCCC-ACACAAGT
* *
2246192 CGGGGTGGCAACCCATTCCAAAGCCCACCCAAGT
1 C--GGTGGCAACCCATTTCAAAGCCCACACAAGT
*
2246226 CGGTGGCAACTCATTTTCAAAGCCCACACAAGT
1 CGGTGGCAACCCA-TTTCAAAGCCCACACAAGT
*
2246259 CTGGTGGCAAACCCATTTAAAAGC
1 C-GGTGGC-AACCCATTTCAAAGC
2246283 TATGCAAGTC
Statistics
Matches: 102, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
30 7 0.07
31 19 0.19
32 12 0.12
33 20 0.20
34 36 0.35
35 8 0.08
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.17
Consensus pattern (32 bp):
CGGTGGCAACCCATTTCAAAGCCCACACAAGT
Found at i:2246282 original size:67 final size:65
Alignment explanation
Indices: 2246130--2246282 Score: 177
Period size: 67 Copynumber: 2.3 Consensus size: 65
2246120 TGCTTGCTCC
* *
2246130 GGTGGCCACCCATTTCAAAGCCCACACAAAGTCGGGCAACCCATTTCAAACCCTACACACGTCGG
1 GGTGGCAACCCATTTCAAAGCCCACACAAAGTCGGGCAACCCATTTCAAACCCTACACAAGTCGG
* * *
2246195 GGTGGCAACCCATTCCAAAGCCCAC-CCAAGTCGGTGGCAACTCATTTTCAAAGCCC-ACACAAG
1 GGTGGCAACCCATTTCAAAGCCCACACAAAGTC-G-GGCAACCCA-TTTCAAA-CCCTACACAAG
*
2246258 TC-T
62 TCGG
*
2246261 GGTGGCAAACCCATTTAAAAGC
1 GGTGGC-AACCCATTTCAAAGC
2246283 TATGCAAGTC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
64 6 0.08
65 24 0.32
66 14 0.19
67 28 0.37
68 3 0.04
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.17
Consensus pattern (65 bp):
GGTGGCAACCCATTTCAAAGCCCACACAAAGTCGGGCAACCCATTTCAAACCCTACACAAGTCGG
Found at i:2247936 original size:21 final size:22
Alignment explanation
Indices: 2247912--2247953 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
2247902 ACCATCATTT
2247912 TTTTTATTATG-TTCATGCATA
1 TTTTTATTATGTTTCATGCATA
2247933 TTTTTATTATGTTTCATGCAT
1 TTTTTATTATGTTTCATGCAT
2247954 TTCTAACCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.60
Consensus pattern (22 bp):
TTTTTATTATGTTTCATGCATA
Found at i:2258643 original size:11 final size:11
Alignment explanation
Indices: 2258629--2258659 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
2258619 ATAAAATATA
2258629 AAAATAATAAT
1 AAAATAATAAT
2258640 AAAATAATAAT
1 AAAATAATAAT
2258651 AAAATAATA
1 AAAATAATA
2258660 TAATTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:2258643 original size:19 final size:19
Alignment explanation
Indices: 2258619--2258659 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
2258609 ATATCCTTTC
2258619 ATAAAAT-ATAAAAATAATA
1 ATAAAATAATAAAAA-AATA
*
2258638 ATAAAATAATAATAAAATA
1 ATAAAATAATAAAAAAATA
2258657 ATA
1 ATA
2258660 TAATTAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
ATAAAATAATAAAAAAATA
Found at i:2258827 original size:95 final size:95
Alignment explanation
Indices: 2258713--2258897 Score: 343
Period size: 95 Copynumber: 1.9 Consensus size: 95
2258703 TCATGTGTCT
*
2258713 AAGTGCCAAATGCCATATAATATAATATTATTAATTATATTAATGCATAAATAGCCCAACCTAGA
1 AAGTGCCAAATGCCATATAATATAATATTATTAATTATATTAATGCACAAATAGCCCAACCTAGA
2258778 CAAGCTTTGCATTAGATCCACATGTATGCC
66 CAAGCTTTGCATTAGATCCACATGTATGCC
* *
2258808 AAGTGCTAAGTGCCATATAATATAATATTATTAATTATATTAATGCACAAATAGCCCAACCTAGA
1 AAGTGCCAAATGCCATATAATATAATATTATTAATTATATTAATGCACAAATAGCCCAACCTAGA
2258873 CAAGCTTTGCATTAGATCCACATGT
66 CAAGCTTTGCATTAGATCCACATGT
2258898 GTCATATTTA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 87 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (95 bp):
AAGTGCCAAATGCCATATAATATAATATTATTAATTATATTAATGCACAAATAGCCCAACCTAGA
CAAGCTTTGCATTAGATCCACATGTATGCC
Found at i:2264466 original size:23 final size:24
Alignment explanation
Indices: 2264432--2264490 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
2264422 TTATAGATAT
*
2264432 TAAAAT-TTAATTTTTAAAT-TTA
1 TAAAATATTAATTTTAAAATATTA
2264454 TAAAATATTAATTTTAAAATAATTA
1 TAAAATATTAATTTTAAAAT-ATTA
*
2264479 TATAA-ATTAATT
1 TAAAATATTAATT
2264491 AAATTTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 6 0.19
23 12 0.38
24 7 0.22
25 7 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TAAAATATTAATTTTAAAATATTA
Found at i:2265455 original size:2 final size:2
Alignment explanation
Indices: 2265448--2265478 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2265438 AACCTCTTTA
2265448 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
2265479 ATAATGGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:2272255 original size:2 final size:2
Alignment explanation
Indices: 2272250--2272282 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2272240 ATATATAGAA
2272250 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2272283 TTATATCCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2273216 original size:20 final size:20
Alignment explanation
Indices: 2273193--2273241 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
2273183 ATGATAAAAA
2273193 ATAATTAAATATAATA-TCAT
1 ATAA-TAAATATAATATTCAT
*
2273213 ATAA-AAA-ATAATATTTAT
1 ATAATAAATATAATATTCAT
2273231 ATAATAAATAT
1 ATAATAAATAT
2273242 TTAAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 6 0.24
18 10 0.40
19 3 0.12
20 6 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATAAATATAATATTCAT
Found at i:2273241 original size:27 final size:27
Alignment explanation
Indices: 2273186--2273241 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
2273176 ATTAAATATG
*
2273186 ATAAAAAATAATTAAATATAATATCAT
1 ATAAAAAATAATTAAATATAATATAAT
**
2273213 ATAAAAAATAATATTTATATAATA-AAT
1 ATAAAAAATAAT-TAAATATAATATAAT
2273240 AT
1 AT
2273242 TTAAAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (27 bp):
ATAAAAAATAATTAAATATAATATAAT
Found at i:2276956 original size:21 final size:20
Alignment explanation
Indices: 2276932--2276975 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
2276922 ATAATAATTT
2276932 TTAAA-AAAATCTTAAAATTGA
1 TTAAACAAAAT-TT-AAATTGA
*
2276953 TTAAACAAAATTTAATTTGA
1 TTAAACAAAATTTAAATTGA
2276973 TTA
1 TTA
2276976 TTTCGATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 7 0.33
22 5 0.24
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (20 bp):
TTAAACAAAATTTAAATTGA
Found at i:2285992 original size:12 final size:12
Alignment explanation
Indices: 2285975--2286000 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2285965 CTGACCTGCA
2285975 TCGAATTGGCGT
1 TCGAATTGGCGT
2285987 TCGAATTGGCGT
1 TCGAATTGGCGT
2285999 TC
1 TC
2286001 CCTTGAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.31, T:0.35
Consensus pattern (12 bp):
TCGAATTGGCGT
Found at i:2287838 original size:12 final size:12
Alignment explanation
Indices: 2287807--2287849 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 12
2287797 TTATTTTTTT
2287807 ATTTATAAAATTCAA
1 ATTTA-AAAATT--A
2287822 ATTTAAAAATTA
1 ATTTAAAAATTA
2287834 ATTTAAAAACTTA
1 ATTTAAAAA-TTA
2287847 ATT
1 ATT
2287850 AACAAACTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 10 0.37
13 6 0.22
14 6 0.22
15 5 0.19
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (12 bp):
ATTTAAAAATTA
Found at i:2287857 original size:13 final size:13
Alignment explanation
Indices: 2287821--2287849 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
2287811 ATAAAATTCA
2287821 AATTTAAAAA-TT
1 AATTTAAAAACTT
2287833 AATTTAAAAACTT
1 AATTTAAAAACTT
2287846 AATT
1 AATT
2287850 AACAAACTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (13 bp):
AATTTAAAAACTT
Found at i:2292215 original size:19 final size:19
Alignment explanation
Indices: 2292191--2292228 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
2292181 TAACAAAATG
2292191 TGTATTTTTTGGTTTTCTA
1 TGTATTTTTTGGTTTTCTA
2292210 TGTATTTTTTGGTTTTCTA
1 TGTATTTTTTGGTTTTCTA
2292229 AATTCTCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.05, G:0.16, T:0.68
Consensus pattern (19 bp):
TGTATTTTTTGGTTTTCTA
Found at i:2295984 original size:15 final size:17
Alignment explanation
Indices: 2295966--2296004 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
2295956 TCACATTTTG
2295966 AAATTTTAA-T-AATTT
1 AAATTTTAATTCAATTT
2295981 AAA--TTAATTCAATTT
1 AAATTTTAATTCAATTT
2295996 AAATTTTAA
1 AAATTTTAA
2296005 AAAAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
13 4 0.20
14 1 0.05
15 11 0.55
17 4 0.20
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATTTTAATTCAATTT
Found at i:2296348 original size:28 final size:27
Alignment explanation
Indices: 2296301--2296367 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
2296291 TAAATTTTAA
2296301 AAAAATATATAATATTTTTTAATAATT-T
1 AAAAATA-A-AATATTTTTTAATAATTAT
* *
2296329 AAAAATAAAATATTTATTTTCATATTTAT
1 AAAAATAAAATA-TT-TTTTAATAATTAT
2296358 AAAAATAAAA
1 AAAAATAAAA
2296368 ATAATTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 4 0.12
27 3 0.09
28 16 0.47
29 11 0.32
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (27 bp):
AAAAATAAAATATTTTTTAATAATTAT
Found at i:2303050 original size:27 final size:27
Alignment explanation
Indices: 2302999--2303051 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
2302989 ATTTAAGTGA
*
2302999 TTTAATATTTATTTTTTTAAGTAAAAT
1 TTTAATATTTATTTTGTTAAGTAAAAT
2303026 TTTAA-ATTTAATATTTGTTAA-TAAAA
1 TTTAATATTT-AT-TTTGTTAAGTAAAA
2303052 AAATTATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 4 0.17
27 12 0.52
28 7 0.30
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (27 bp):
TTTAATATTTATTTTGTTAAGTAAAAT
Found at i:2303127 original size:19 final size:19
Alignment explanation
Indices: 2303103--2303146 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
2303093 CCATTCAAAT
*
2303103 TAAATTAATCGATATTTAA
1 TAAATTAATAGATATTTAA
**
2303122 TAAATTTTTAGATATTTAA
1 TAAATTAATAGATATTTAA
2303141 TAAATT
1 TAAATT
2303147 TTTAAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (19 bp):
TAAATTAATAGATATTTAA
Found at i:2303147 original size:19 final size:19
Alignment explanation
Indices: 2303113--2303156 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
2303103 TAAATTAATC
2303113 GATATTTAATAAATTTTTA
1 GATATTTAATAAATTTTTA
2303132 GATATTTAATAAATTTTTA
1 GATATTTAATAAATTTTTA
*
2303151 AATATT
1 GATATT
2303157 AAAATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
GATATTTAATAAATTTTTA
Found at i:2303410 original size:24 final size:24
Alignment explanation
Indices: 2303378--2303423 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
2303368 TATAATATAA
* *
2303378 ATAATATTAATATATTAAAATTAT
1 ATAAAATTAATATACTAAAATTAT
2303402 ATAAAATTAATATACTAAAATT
1 ATAAAATTAATATACTAAAATT
2303424 TAAATAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATAAAATTAATATACTAAAATTAT
Found at i:2303434 original size:14 final size:14
Alignment explanation
Indices: 2303358--2303435 Score: 58
Period size: 14 Copynumber: 5.6 Consensus size: 14
2303348 AGTAGAACAA
2303358 ATAATTAAAATATAAT
1 ATAA-TAAAAT-TAAT
*
2303374 ATAAATAATATTAAT
1 AT-AATAAAATTAAT
*
2303389 ATATTAAAA-T--T
1 ATAATAAAATTAAT
2303400 AT-ATAAAATTAAT
1 ATAATAAAATTAAT
*
2303413 ATACTAAAATTTAA-
1 ATAATAAAA-TTAAT
2303427 ATAATAAAA
1 ATAATAAAA
2303436 ATAAAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
10 5 0.10
11 4 0.08
13 4 0.08
14 18 0.36
15 10 0.20
16 7 0.14
17 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAATAAAATTAAT
Found at i:2304188 original size:14 final size:16
Alignment explanation
Indices: 2304155--2304191 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
2304145 AGATTTAATC
2304155 ATTTTGAAATTAAGTT
1 ATTTTGAAATTAAGTT
*
2304171 ATTTT-AAATT-ATTT
1 ATTTTGAAATTAAGTT
2304185 ATTTTGA
1 ATTTTGA
2304192 TCAATTAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 8 0.42
15 6 0.32
16 5 0.26
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (16 bp):
ATTTTGAAATTAAGTT
Found at i:2304811 original size:65 final size:65
Alignment explanation
Indices: 2304705--2304837 Score: 207
Period size: 64 Copynumber: 2.0 Consensus size: 65
2304695 ACAAATTATT
*
2304705 TCATGTCCGTCTCTACAATCCTTAGTTGTTTCAGTGCCATTAAAAGCTTGCACTCGACCACAGCT
1 TCATGTCCG-CTCTACAATCCTTAGTTGTTTCAGTGCCATT-AAAGCTTGCACTCAACCACAGCT
2304770 TG
64 TG
*
2304772 TCATGTCCG-TCTACAATCC-TATGTTGTTTCAGTGCCATTAAAGCTTGCACTCAACTACAGCTT
1 TCATGTCCGCTCTACAATCCTTA-GTTGTTTCAGTGCCATTAAAGCTTGCACTCAACCACAGCTT
2304835 G
65 G
2304836 TC
1 TC
2304838 TGGGTACATC
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
64 27 0.43
65 27 0.43
67 9 0.14
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.34
Consensus pattern (65 bp):
TCATGTCCGCTCTACAATCCTTAGTTGTTTCAGTGCCATTAAAGCTTGCACTCAACCACAGCTTG
Found at i:2305437 original size:28 final size:29
Alignment explanation
Indices: 2305380--2305442 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
2305370 ATATTATATA
*
2305380 TTTTATATAAATTTTAATATGTTAATAAT
1 TTTTATATAAATTTTAATATGCTAATAAT
* *
2305409 TTTTATCATAAGTTTTTATAT-CTAA-AAT
1 TTTTAT-ATAAATTTTAATATGCTAATAAT
2305437 TTTTAT
1 TTTTAT
2305443 TTTCAAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 9 0.30
29 9 0.30
30 12 0.40
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (29 bp):
TTTTATATAAATTTTAATATGCTAATAAT
Found at i:2305934 original size:9 final size:9
Alignment explanation
Indices: 2305920--2305998 Score: 115
Period size: 9 Copynumber: 8.6 Consensus size: 9
2305910 TATACGTCAC
2305920 TTATT-TTA
1 TTATTATTA
2305928 TTTATTTATTTA
1 -TTA-TTAT-TA
*
2305940 TTTTTATTA
1 TTATTATTA
2305949 TTATTATTA
1 TTATTATTA
2305958 TTATTATTA
1 TTATTATTA
2305967 TTATTATTA
1 TTATTATTA
2305976 TTATTATTA
1 TTATTATTA
2305985 TTATTATTA
1 TTATTATTA
2305994 TTATT
1 TTATT
2305999 TTAAGGATAA
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
9 54 0.83
10 6 0.09
11 3 0.05
12 2 0.03
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTATTATTA
Found at i:2305951 original size:3 final size:3
Alignment explanation
Indices: 2305937--2305998 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
2305927 ATTTATTTAT
*
2305937 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
2305985 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
2305999 TTAAGGATAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:2306177 original size:11 final size:11
Alignment explanation
Indices: 2306161--2306201 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
2306151 TGTAATTATG
2306161 TAATATAAATA
1 TAATATAAATA
*
2306172 TAATATAAAAA
1 TAATATAAATA
2306183 TAAT-TAAAATA
1 TAATAT-AAATA
2306194 TAATATAA
1 TAATATAA
2306202 CATAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 1 0.04
11 24 0.92
12 1 0.04
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATATAAATA
Found at i:2306207 original size:17 final size:16
Alignment explanation
Indices: 2306161--2306217 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
2306151 TGTAATTATG
*
2306161 TAATATAAATATAATA
1 TAATATAAATAAAATA
* *
2306177 TAAAAATAATTAAAATA
1 T-AATATAAATAAAATA
*
2306194 TAATATAACATAAAAAA
1 TAATATAA-ATAAAATA
2306211 TAATATA
1 TAATATA
2306218 TACATTACAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 7 0.21
17 26 0.79
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATATAAATAAAATA
Found at i:2306215 original size:22 final size:22
Alignment explanation
Indices: 2306167--2306217 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
2306157 TATGTAATAT
**
2306167 AAATATAATATAAAAATAATTA
1 AAATATAATATAAAAATAAAAA
*
2306189 AAATATAATAT-AACATAAAAA
1 AAATATAATATAAAAATAAAAA
2306210 ATAATATA
1 A-AATATA
2306218 TACATTACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATATAATATAAAAATAAAAA
Found at i:2307992 original size:9 final size:8
Alignment explanation
Indices: 2307966--2307990 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
2307956 TAATATAAAA
2307966 TAATTTTT
1 TAATTTTT
2307974 TAATTTTT
1 TAATTTTT
2307982 TAATTTTT
1 TAATTTTT
2307990 T
1 T
2307991 TATAAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TAATTTTT
Found at i:2309891 original size:2 final size:2
Alignment explanation
Indices: 2309884--2309913 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2309874 ACTACAACTA
2309884 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2309914 TATCTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2311139 original size:35 final size:37
Alignment explanation
Indices: 2311086--2311157 Score: 87
Period size: 35 Copynumber: 2.0 Consensus size: 37
2311076 AACTCAAATT
* *
2311086 TTTTATTTTTTATTTAAAT-TTAAATT-AATTTAAAA
1 TTTTATTTTTTATATAAATAATAAATTAAATTTAAAA
*
2311121 TTTTATTTTATTA-ATAAATAATAATTTAAATTTAAAA
1 TTTTATTTT-TTATATAAATAATAAATTAAATTTAAAA
2311158 AACTTTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
35 14 0.45
36 8 0.26
37 9 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (37 bp):
TTTTATTTTTTATATAAATAATAAATTAAATTTAAAA
Found at i:2312999 original size:32 final size:32
Alignment explanation
Indices: 2312962--2313052 Score: 116
Period size: 32 Copynumber: 2.8 Consensus size: 32
2312952 TCATGTGTTC
2312962 CATTAGAGACACATTTGATGTCATCATTTAA-A
1 CATTAGA-ACACATTTGATGTCATCATTTAACA
*
2312994 CATTAGAAGCACATTTGATGTCATCGTTTAAGCA
1 CATTAGAA-CACATTTGATGTCATCATTTAA-CA
*
2313028 CATT-TAA-ACATTTGATGTCATCATT
1 CATTAGAACACATTTGATGTCATCATT
2313053 AAAAATCCCC
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
31 18 0.34
32 28 0.53
33 2 0.04
34 5 0.09
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (32 bp):
CATTAGAACACATTTGATGTCATCATTTAACA
Found at i:2314298 original size:15 final size:14
Alignment explanation
Indices: 2314278--2314308 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
2314268 TAATGTAATA
2314278 ATTTTTATTATTTTT
1 ATTTTTATT-TTTTT
2314293 ATTTTTATTTTTTT
1 ATTTTTATTTTTTT
2314307 AT
1 AT
2314309 CGATCTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
ATTTTTATTTTTTT
Found at i:2314371 original size:27 final size:26
Alignment explanation
Indices: 2314315--2314371 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
2314305 TTATCGATCT
2314315 TATTTATTTTTTAAATAATTTTAAAG
1 TATTTATTTTTTAAATAATTTTAAAG
*
2314341 -ATTTATTTTTTTATAATAA-TTTAATG
1 TATTTA-TTTTTTA-AATAATTTTAAAG
2314367 TATTT
1 TATTT
2314372 TAAGATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 5 0.19
26 13 0.48
27 9 0.33
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (26 bp):
TATTTATTTTTTAAATAATTTTAAAG
Found at i:2315742 original size:25 final size:26
Alignment explanation
Indices: 2315713--2315793 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 26
2315703 AAAATCATTT
2315713 AATTATTTATTATATTATTAAAAT-A
1 AATTATTTATTATATTATTAAAATAA
* *
2315738 AATTATTTATTAT-TAAATTTAAATAA
1 AATTATTTATTATAT-TATTAAAATAA
*
2315764 AATTA-TTATTTTTATTATT-AAATAA
1 AATTATTTA-TTATATTATTAAAATAA
2315789 TAATT
1 -AATT
2315794 TAAATTATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
24 1 0.02
25 29 0.62
26 16 0.34
27 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
AATTATTTATTATATTATTAAAATAA
Found at i:2316100 original size:4 final size:4
Alignment explanation
Indices: 2316091--2316115 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
2316081 ATAGCACCAT
2316091 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
2316116 GAATGAATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:2316977 original size:13 final size:14
Alignment explanation
Indices: 2316955--2316983 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
2316945 AAAAAATTTA
2316955 TAAATATTAAAATT
1 TAAATATTAAAATT
2316969 TAAAT-TTAAAATT
1 TAAATATTAAAATT
2316982 TA
1 TA
2316984 TCGAATCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAAATATTAAAATT
Found at i:2321337 original size:2 final size:2
Alignment explanation
Indices: 2321330--2321372 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
2321320 ACTTGTAGTT
2321330 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2321372 T
1 T
2321373 TCAATCTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2323151 original size:13 final size:13
Alignment explanation
Indices: 2323129--2323160 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
2323119 TTTTATTTTT
2323129 TAAA-ATTAAATA
1 TAAATATTAAATA
2323141 TAAATATTAAATA
1 TAAATATTAAATA
2323154 TAAATAT
1 TAAATAT
2323161 ATTTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATTAAATA
Found at i:2323167 original size:19 final size:19
Alignment explanation
Indices: 2323112--2323167 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
2323102 TAAAAAGTGT
* *
2323112 ATATAAATTTTATTTTTTAA
1 ATATAAA-TATATTTATTAA
**
2323132 A-ATTAAATATAAATATTAA
1 ATA-TAAATATATTTATTAA
2323151 ATATAAATATATTTATT
1 ATATAAATATATTTATT
2323168 TATTTTTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
19 22 0.79
20 6 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATAAATATATTTATTAA
Found at i:2323617 original size:18 final size:18
Alignment explanation
Indices: 2323594--2323628 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2323584 ATATTTTTTT
*
2323594 AATATAATTATAATAAAA
1 AATATAAATATAATAAAA
2323612 AATATAAATATAATAAA
1 AATATAAATATAATAAA
2323629 TTATAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAAATATAATAAAA
Found at i:2324115 original size:38 final size:38
Alignment explanation
Indices: 2324073--2324146 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
2324063 ATTATTTTTA
* *
2324073 ATTTA-AAGTTAAATAATTTAAA-ATTTATTTATATTAAT
1 ATTTATAA-TTAAAT-ATATAAATATTTATTTAAATTAAT
*
2324111 ATTTATAATTATATATATAAATATTTATTTAAATTA
1 ATTTATAATTAAATATATAAATATTTATTTAAATTA
2324147 TTTAATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 6 0.19
38 23 0.74
39 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (38 bp):
ATTTATAATTAAATATATAAATATTTATTTAAATTAAT
Found at i:2324721 original size:21 final size:21
Alignment explanation
Indices: 2324679--2324722 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
2324669 ATTCTGATCG
*
2324679 TAAATATATTTTTAATTATTT
1 TAAATATATTTTTAAATATTT
*
2324700 TAAA-ATATTATTTAAATCTTT
1 TAAATATATT-TTTAAATATTT
2324721 TA
1 TA
2324723 TTTCAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TAAATATATTTTTAAATATTT
Found at i:2326447 original size:16 final size:16
Alignment explanation
Indices: 2326428--2326516 Score: 54
Period size: 16 Copynumber: 5.4 Consensus size: 16
2326418 TTAAATTAAA
2326428 TAAATATATTATTATT
1 TAAATATATTATTATT
** *
2326444 TAAATAATATTAAAAAT
1 TAAAT-ATATTATTATT
* *
2326461 AAAATATATTTTTATAT
1 TAAATATATTATTAT-T
* *
2326478 TAATATTTATAATTATT
1 TAA-ATATATTATTATT
* *
2326495 AAAATAT-TTAATTATA
1 TAAATATATT-ATTATT
2326511 TAAATA
1 TAAATA
2326517 ATAATTTAAA
Statistics
Matches: 52, Mismatches: 17, Indels: 8
0.68 0.22 0.10
Matches are distributed among these distances:
15 1 0.02
16 24 0.46
17 18 0.35
18 9 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TAAATATATTATTATT
Found at i:2326687 original size:15 final size:14
Alignment explanation
Indices: 2326649--2326687 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
2326639 TATATTATAA
2326649 TTAATTTATAAATT
1 TTAATTTATAAATT
*
2326663 TTATAGTTATAAAATT
1 TTA-ATTTAT-AAATT
2326679 TTAATTTAT
1 TTAATTTAT
2326688 TTTATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 3 0.14
15 10 0.48
16 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TTAATTTATAAATT
Found at i:2326702 original size:11 final size:11
Alignment explanation
Indices: 2326683--2326724 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
2326673 AAAATTTTAA
2326683 TTTATTTTATAT
1 TTTA-TTTATAT
2326695 TTTATTTATAT
1 TTTATTTATAT
*
2326706 TATATTT-TAT
1 TTTATTTATAT
2326716 TATTATTTA
1 T-TTATTTA
2326725 AAATTGTCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 4 0.15
11 18 0.69
12 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTATTTATAT
Found at i:2326703 original size:16 final size:16
Alignment explanation
Indices: 2326625--2326716 Score: 68
Period size: 16 Copynumber: 5.8 Consensus size: 16
2326615 TTTTAAATAT
2326625 TTATATTATTATTATATA
1 TTATATT-TTATT-TATA
* *
2326643 TTATAATTAATTTATA
1 TTATATTTTATTTATA
2326659 --A-ATTTTATAGTTATA
1 TTATATTTTAT--TTATA
* *
2326674 --AAATTTTAATTTATT
1 TTATATTTT-ATTTATA
2326689 TTATATTTTATTTATA
1 TTATATTTTATTTATA
2326705 TTATATTTTATT
1 TTATATTTTATT
2326717 ATTATTTAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
13 5 0.08
14 1 0.02
15 10 0.16
16 27 0.44
17 12 0.20
18 6 0.10
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (16 bp):
TTATATTTTATTTATA
Found at i:2327591 original size:9 final size:9
Alignment explanation
Indices: 2327573--2327614 Score: 52
Period size: 8 Copynumber: 4.8 Consensus size: 9
2327563 TATGATTAAA
2327573 TTTA-AATT
1 TTTATAATT
2327581 TTTATAATT
1 TTTATAATT
2327590 TTTAT-ATT
1 TTTATAATT
*
2327598 TTTAGAATAT
1 TTTATAAT-T
2327608 TTTATAA
1 TTTATAA
2327615 CTAAATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 11 0.38
9 11 0.38
10 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTATAATT
Found at i:2327598 original size:17 final size:18
Alignment explanation
Indices: 2327573--2327613 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
2327563 TATGATTAAA
* *
2327573 TTTAAATTTTTATAAT-T
1 TTTATATTTTTAGAATAT
2327590 TTTATATTTTTAGAATAT
1 TTTATATTTTTAGAATAT
2327608 TTTATA
1 TTTATA
2327614 ACTAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTATATTTTTAGAATAT
Found at i:2327955 original size:16 final size:16
Alignment explanation
Indices: 2327918--2327956 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
2327908 TTTTAATTTA
*
2327918 TATTTAAATAAAAAAT
1 TATTAAAATAAAAAAT
*
2327934 TAATTAAAATATAAAAT
1 T-ATTAAAATAAAAAAT
2327951 TATTAA
1 TATTAA
2327957 TCATTTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:2328516 original size:29 final size:27
Alignment explanation
Indices: 2328462--2328521 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 27
2328452 ACTAGAATGA
2328462 AAATTTTTTTCATTATTAATTGTATTT
1 AAATTTTTTTCATTATTAATTGTATTT
*
2328489 AAATTTTATTTTA-TATTAAATTAGTATTT
1 AAATTTT-TTTCATTATT-AATT-GTATTT
2328518 AAAT
1 AAAT
2328522 AATATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 11 0.38
28 8 0.28
29 10 0.34
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (27 bp):
AAATTTTTTTCATTATTAATTGTATTT
Found at i:2328532 original size:28 final size:28
Alignment explanation
Indices: 2328475--2328537 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
2328465 TTTTTTTCAT
** *
2328475 TATT-AATTGTATTTAAATTTTATTTTA
1 TATTAAATTGTATTTAAATAATATTATA
2328502 TATTAAATTAGTATTTAAATAATA-TATA
1 TATTAAATT-GTATTTAAATAATATTATA
2328530 TATTAAAT
1 TATTAAAT
2328538 CGATTAATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 4 0.13
28 15 0.48
29 12 0.39
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (28 bp):
TATTAAATTGTATTTAAATAATATTATA
Found at i:2328687 original size:16 final size:17
Alignment explanation
Indices: 2328658--2328699 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
2328648 AAATAGTACA
*
2328658 AATATAATATATAAAAT
1 AATATAAAATATAAAAT
*
2328675 AAT-TAAAATATAATAT
1 AATATAAAATATAAAAT
2328691 AATATAAAA
1 AATATAAAA
2328700 ATATTAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATATAAAATATAAAAT
Found at i:2328691 original size:28 final size:29
Alignment explanation
Indices: 2328658--2328730 Score: 100
Period size: 26 Copynumber: 2.7 Consensus size: 29
2328648 AAATAGTACA
2328658 AATATAATATATAAAATAATTAAAATAT-
1 AATATAATATATAAAATAATTAAAATATC
*
2328686 AATATAATATA-AAAAT-ATTAATATATC
1 AATATAATATATAAAATAATTAAAATATC
*
2328713 AA-AAAATATATAAAATAA
1 AATATAATATATAAAATAA
2328731 ACTATTAGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
26 16 0.40
27 12 0.30
28 12 0.30
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (29 bp):
AATATAATATATAAAATAATTAAAATATC
Found at i:2328747 original size:32 final size:33
Alignment explanation
Indices: 2328687--2328758 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 33
2328677 TTAAAATATA
*
2328687 ATATAATATAAAAATATTAATATATCAAAAAAT
1 ATATAAAATAAAAATATTAATATATCAAAAAAT
* * * **
2328720 ATATAAAAT-AAACTATTAGTATTTCAAAACTT
1 ATATAAAATAAAAATATTAATATATCAAAAAAT
2328752 ATATAAA
1 ATATAAA
2328759 TATATAGATG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 25 0.76
33 8 0.24
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.35
Consensus pattern (33 bp):
ATATAAAATAAAAATATTAATATATCAAAAAAT
Found at i:2328949 original size:18 final size:17
Alignment explanation
Indices: 2328922--2328974 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 17
2328912 TTTTAAAAAA
*
2328922 TTATTATTAAAGATATTT
1 TTATTTTTAAA-ATATTT
2328940 TTATTTTTAAAAATAATTTT
1 TTATTTTT-AAAAT-A-TTT
2328960 TTATTTTTAAAATAT
1 TTATTTTTAAAATAT
2328975 AATTATTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 1 0.03
18 10 0.32
19 9 0.29
20 11 0.35
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (17 bp):
TTATTTTTAAAATATTT
Found at i:2328967 original size:21 final size:21
Alignment explanation
Indices: 2328937--2328978 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
2328927 ATTAAAGATA
2328937 TTTTTATTTTTAAAA-ATAAT
1 TTTTTATTTTTAAAATATAAT
2328957 TTTTTATTTTTAAAATATAAT
1 TTTTTATTTTTAAAATATAAT
2328978 T
1 T
2328979 ATTAAGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTTATTTTTAAAATATAAT
Found at i:2329554 original size:15 final size:16
Alignment explanation
Indices: 2329519--2329553 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
2329509 TGAAGTTTAT
*
2329519 TTTTTAATTTAAAATA
1 TTTTAAATTTAAAATA
*
2329535 TTTTAAATTTAAATTA
1 TTTTAAATTTAAAATA
2329551 TTT
1 TTT
2329554 AGATAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTTAAATTTAAAATA
Found at i:2333415 original size:11 final size:11
Alignment explanation
Indices: 2333399--2333445 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
2333389 TATCATAATT
2333399 TATAATATAAA
1 TATAATATAAA
2333410 TATAATATAAA
1 TATAATATAAA
2333421 TAT-ATA-AAA
1 TATAATATAAA
2333430 TA-AA-ATAAA
1 TATAATATAAA
*
2333439 CATAATA
1 TATAATA
2333446 CGAATACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
8 1 0.03
9 10 0.32
10 5 0.16
11 15 0.48
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (11 bp):
TATAATATAAA
Found at i:2333427 original size:13 final size:12
Alignment explanation
Indices: 2333399--2333436 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
2333389 TATCATAATT
2333399 TATAATAT-AAA
1 TATAATATAAAA
2333410 TATAATATAAATA
1 TATAATATAAA-A
*
2333423 TATAAAATAAAA
1 TATAATATAAAA
2333435 TA
1 TA
2333437 AACATAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 8 0.33
12 5 0.21
13 11 0.46
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
TATAATATAAAA
Found at i:2333451 original size:29 final size:29
Alignment explanation
Indices: 2333400--2333457 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
2333390 ATCATAATTT
* * * *
2333400 ATAATATAAATATAATATAAATATATAAA
1 ATAAAATAAACATAATACAAATACATAAA
*
2333429 ATAAAATAAACATAATACGAATACATAAA
1 ATAAAATAAACATAATACAAATACATAAA
2333458 TAGTTAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (29 bp):
ATAAAATAAACATAATACAAATACATAAA
Found at i:2337987 original size:3 final size:3
Alignment explanation
Indices: 2337979--2338003 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2337969 GTAACTACAT
2337979 CTC CTC CTC CTC CTC CTC CTC CTC C
1 CTC CTC CTC CTC CTC CTC CTC CTC C
2338004 AGCTGCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (3 bp):
CTC
Found at i:2341247 original size:18 final size:19
Alignment explanation
Indices: 2341210--2341246 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
2341200 ATTTTTTAAT
2341210 TTAAGATTTTTTAAAAAAA
1 TTAAGATTTTTTAAAAAAA
*
2341229 TTAATATTTTTTAAAAAA
1 TTAAGATTTTTTAAAAAA
2341247 TATTTTAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TTAAGATTTTTTAAAAAAA
Found at i:2341668 original size:22 final size:23
Alignment explanation
Indices: 2341642--2341685 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
2341632 AATTAAAAAA
2341642 ATAT-TTTTAT-ATT-AATATTT
1 ATATATTTTATAATTAAATATTT
2341662 ATATATTTTATAATTAAATATTT
1 ATATATTTTATAATTAAATATTT
2341685 A
1 A
2341686 ATAAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.19
21 6 0.29
22 3 0.14
23 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
ATATATTTTATAATTAAATATTT
Found at i:2341684 original size:15 final size:15
Alignment explanation
Indices: 2341664--2341713 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
2341654 TAATATTTAT
2341664 ATATTTTATAATTAA
1 ATATTTTATAATTAA
*
2341679 ATATTTAATAA--AA
1 ATATTTTATAATTAA
*
2341692 ATATTATTAATTATTAA
1 ATATT-TT-ATAATTAA
2341709 ATATT
1 ATATT
2341714 AATCCGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 7 0.25
14 1 0.04
15 13 0.46
17 7 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTTTATAATTAA
Found at i:2342244 original size:29 final size:29
Alignment explanation
Indices: 2342177--2342245 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 29
2342167 TGAAAAAAAA
2342177 AATTATAAATATTTAAATTTAATTTTAAATT
1 AATTA-AAATATTTAAA-TTAATTTTAAATT
*
2342208 TATT-AAATA-TTAAA-TAATTATATAAATT
1 AATTAAAATATTTAAATTAATT-T-TAAATT
2342236 AATTAAAATA
1 AATTAAAATA
2342246 AATGTCAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
26 5 0.15
27 1 0.03
28 14 0.42
29 10 0.30
31 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
AATTAAAATATTTAAATTAATTTTAAATT
Found at i:2343124 original size:13 final size:14
Alignment explanation
Indices: 2343106--2343138 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2343096 CAAACTCTTT
2343106 ATTTAA-TAAACGA
1 ATTTAATTAAACGA
*
2343119 ATTTAATTGAACGA
1 ATTTAATTAAACGA
2343133 ATTTAA
1 ATTTAA
2343139 ATAATTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (14 bp):
ATTTAATTAAACGA
Found at i:2344312 original size:2 final size:2
Alignment explanation
Indices: 2344305--2344329 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2344295 AAAGGATGCA
2344305 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
2344330 TAGTAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:2344935 original size:17 final size:17
Alignment explanation
Indices: 2344909--2344984 Score: 72
Period size: 16 Copynumber: 4.7 Consensus size: 17
2344899 AATTATATCT
*
2344909 TTTA-ATTAAATACATA
1 TTTATATTAAATACTTA
*
2344925 TTTATATTAAATATTTA
1 TTTATATTAAATACTTA
*
2344942 -TTATATTTAATACTTAA
1 TTTATATTAAATACTT-A
*
2344959 TTAATATTAAA-A-TTA
1 TTTATATTAAATACTTA
2344974 TTTA-ATTAAAT
1 TTTATATTAAAT
2344985 TAATAATTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
14 6 0.12
15 4 0.08
16 19 0.39
17 12 0.24
18 8 0.16
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTATATTAAATACTTA
Found at i:2344945 original size:16 final size:17
Alignment explanation
Indices: 2344913--2344969 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
2344903 ATATCTTTTA
* *
2344913 ATTAAATACATATTTAT
1 ATTAAATACTTAATTAT
*
2344930 ATTAAATA-TTTATTAT
1 ATTAAATACTTAATTAT
*
2344946 ATTTAATACTTAATTAAT
1 ATTAAATACTTAATT-AT
2344964 ATTAAA
1 ATTAAA
2344970 ATTATTTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
16 12 0.38
17 13 0.41
18 7 0.22
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTAAATACTTAATTAT
Found at i:2344980 original size:20 final size:20
Alignment explanation
Indices: 2344955--2344992 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2344945 TATTTAATAC
2344955 TTAATTAATATTAA-AATTAT
1 TTAATTAA-ATTAATAATTAT
2344975 TTAATTAAATTAATAATT
1 TTAATTAAATTAATAATT
2344993 TAAATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAATTAAATTAATAATTAT
Found at i:2345895 original size:22 final size:24
Alignment explanation
Indices: 2345860--2345905 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
2345850 ATGTAATTAT
2345860 AAAATATATAAAT-AT-TAATACA
1 AAAATATATAAATAATATAATACA
* *
2345882 AAAATATTTTAATAATATAATACA
1 AAAATATATAAATAATATAATACA
2345906 TAGTAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
23 2 0.10
24 7 0.35
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAATATATAAATAATATAATACA
Found at i:2352404 original size:2 final size:2
Alignment explanation
Indices: 2352399--2352450 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
2352389 CCTATGTGTG
*
2352399 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2352441 TA TA TA TA TA
1 TA TA TA TA TA
2352451 AGAATTTTCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.