Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2400
Parameters: 2 7 7 80 10 50 1000
Length:  53862

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1083--1351
36
7.2
36
62
12
112
32
7
21
38
1.81
1122--1245
39
3.3
39
64
11
94
29
7
22
40
1.81
1063--1395
75
4.4
75
93
0
549
31
8
21
38
1.83
1877--1920
20
2.1
22
91
8
74
40
20
9
29
1.83
2595--2804
75
2.8
75
91
0
330
30
8
21
39
1.82
2617--2744
39
3.4
39
68
6
118
28
7
22
42
1.79
4142--4186
21
2.1
21
83
0
54
40
4
15
40
1.67
6582--6618
2
18.5
2
100
0
74
48
0
0
51
1.00
9374--9413
20
2.0
21
90
5
64
10
2
15
72
1.21
9367--9420
24
2.2
24
84
15
76
7
1
18
72
1.17
11716--11750
16
2.1
17
89
5
54
45
5
2
45
1.41
11734--11793
32
1.9
31
86
3
84
35
3
5
56
1.37
11733--11790
16
3.7
16
79
2
64
36
3
5
55
1.39
11953--11983
16
1.9
16
93
0
53
41
6
3
48
1.45
11990--12038
17
2.9
17
81
3
64
40
0
0
59
0.98
13874--13939
33
2.2
29
75
19
71
33
9
21
36
1.85
13886--13948
33
1.9
33
100
0
126
31
9
19
39
1.83
19374--19400
2
13.5
2
100
0
54
48
0
51
0
1.00
25178--25243
18
3.9
17
70
23
50
43
3
3
50
1.33
26554--26625
19
3.8
19
78
18
71
55
1
0
43
1.08
27210--27259
19
2.4
21
83
9
68
58
0
0
42
0.98
27181--27261
27
3.0
27
68
12
69
54
0
1
44
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27859--27891
15
2.2
15
89
10
50
63
0
0
36
0.95
27894--27928
11
3.1
11
91
4
52
37
5
0
57
1.23
28378--28422
17
2.6
18
78
7
56
48
2
0
48
1.13
28888--28924
19
1.9
19
88
0
56
51
0
0
48
1.00
29103--29149
3
15.7
3
100
0
94
68
0
0
31
0.90
29277--29305
3
9.7
3
100
0
58
34
0
0
65
0.93
29553--29602
16
3.2
16
75
13
59
22
0
8
70
1.13
30708--30750
22
2.0
22
86
9
61
41
2
0
55
1.12
31000--31099
32
3.0
32
83
11
128
46
9
5
40
1.57
31004--31126
36
3.6
36
89
5
175
49
7
3
39
1.47
31036--31092
18
3.2
18
68
9
53
50
5
3
40
1.42
32388--32418
2
15.5
2
93
0
53
48
0
3
48
1.17
32872--32919
2
24.0
2
86
0
69
47
0
0
52
1.00
36223--36259
12
3.1
12
92
0
65
24
2
0
72
0.97
36388--36425
20
1.9
20
94
0
67
26
10
5
57
1.53
39182--39212
2
15.5
2
100
0
62
51
0
0
48
1.00
42863--42897
16
2.2
16
100
0
70
28
20
31
20
1.97
45359--45387
2
14.5
2
100
0
58
48
0
0
51
1.00
45869--45917
25
2.0
25
87
0
71
44
4
14
36
1.64
46866--46911
22
2.0
22
83
4
56
50
21
4
23
1.67
48105--48152
22
2.3
21
80
16
55
39
0
2
58
1.10
51557--51623
22
3.1
22
70
16
59
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51558--51624
12
5.9
11
73
22
50
41
0
0
58
0.98
51569--51615
19
2.6
18
73
6
51
44
0
0
55
0.99
52022--52062
19
2.3
18
87
8
57
39
7
0
53
1.29
52114--52156
23
1.9
23
86
13
63
48
0
0
51
1.00
52733--52770
18
2.1
18
90
0
58
60
0
0
39
0.97
52763--52806
20
2.2
21
84
11
58
45
0
0
54
0.99
52771--52810
20
2.0
20
90
9
64
40
0
0
60
0.97
53155--53206
26
2.0
26
96
0
95
32
3
15
48
1.63

Tables:   1

The End!