Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35961
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2509 original size:3 final size:3
Alignment explanation
Indices: 2501--2545 Score: 81
Period size: 3 Copynumber: 14.7 Consensus size: 3
2491 TATTAAACCA
2501 AAT AAT AAT AAT AAT AAT AAT ACAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AA
2546 AGGTACACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:2530 original size:22 final size:22
Alignment explanation
Indices: 2502--2544 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
2492 ATTAAACCAA
2502 ATAATAATAATAATAATAATAC
1 ATAATAATAATAATAATAATAC
2524 ATAATAATAATAATAATAATA
1 ATAATAATAATAATAATAATA
2545 AAGGTACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
ATAATAATAATAATAATAATAC
Found at i:5244 original size:2 final size:2
Alignment explanation
Indices: 5239--5268 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
5229 ATATATATAT
5239 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
5269 CAATTGTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5821 original size:9 final size:9
Alignment explanation
Indices: 5809--5838 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
5799 AGAAGACGAA
5809 GAAGAAGAG
1 GAAGAAGAG
5818 GAAGAAGAG
1 GAAGAAGAG
*
5827 GAAGAGGAG
1 GAAGAAGAG
5836 GAA
1 GAA
5839 ATTTGGGAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (9 bp):
GAAGAAGAG
Found at i:6445 original size:21 final size:20
Alignment explanation
Indices: 6415--6453 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
6405 AAAAAATCTA
6415 AAAACATAAAAATCTTAAAGT
1 AAAACATAAAAAT-TTAAAGT
*
6436 AAAACTTAAAAATTTAAA
1 AAAACATAAAAATTTAAA
6454 AAATAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAACATAAAAATTTAAAGT
Found at i:8044 original size:27 final size:27
Alignment explanation
Indices: 7982--8051 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
7972 AAATTTATAT
*
7982 ATTTATAAATTATTATATAAAAATAAA
1 ATTTATATATTATTATATAAAAATAAA
8009 ATTTATATATTATTATAT-AAAATAAA
1 ATTTATATATTATTATATAAAAATAAA
*
8035 ATTTATTATATAATTAT
1 ATTTA-TATATTATTAT
8052 TTCCATATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 13 0.32
27 27 0.68
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
ATTTATATATTATTATATAAAAATAAA
Found at i:10873 original size:19 final size:18
Alignment explanation
Indices: 10848--10915 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
10838 AATTCAACGA
10848 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
10866 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
10882 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
10898 TATTGTATCGATACATAA
1 T-TTGTATCGATACATAA
10916 TCAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
18 1 0.02
19 27 0.63
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:10886 original size:32 final size:32
Alignment explanation
Indices: 10850--10912 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
10840 TTCAACGATT
*
10850 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
10882 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
10913 TAATCAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:10887 original size:13 final size:13
Alignment explanation
Indices: 10869--10893 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10859 ACATAAGTGT
10869 TGTATCGATACAA
1 TGTATCGATACAA
10882 TGTATCGATACA
1 TGTATCGATACA
10894 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:14932 original size:22 final size:22
Alignment explanation
Indices: 14907--14949 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14897 TTATGAGCAG
*
14907 AAAAGACATACCAATTATTATT
1 AAAAGAAATACCAATTATTATT
* *
14929 AAAATAAATACCAATTGTTAT
1 AAAAGAAATACCAATTATTAT
14950 CTATTTGTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.33
Consensus pattern (22 bp):
AAAAGAAATACCAATTATTATT
Found at i:20967 original size:28 final size:28
Alignment explanation
Indices: 20927--20998 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
20917 GGAATAAAGC
** *
20927 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
20955 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
20983 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
20999 TCGATTATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:21202 original size:51 final size:51
Alignment explanation
Indices: 20986--21210 Score: 225
Period size: 52 Copynumber: 4.3 Consensus size: 51
20976 GAAATAACGA
* * * *
20986 GGTTGGAGTATCCTCGATTATGAAAAATTGGTATTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAA-T--TAGTGTTTTGGAAATAAAACCGG
* * * * *
21040 AGTTGGAGTATCCCCGATTAAAGGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTAGTGTTTTGGAAATAAAACCGG
* * *
21093 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTGTTTTGGAAATAAAACCGG
* * * * * **
21145 GATTGGAGTATCCCCGATTATGAAAAATCAATATTATGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGG
21196 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
21211 TCGGAAATAA
Statistics
Matches: 140, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
51 36 0.26
52 44 0.31
53 36 0.26
54 17 0.12
55 1 0.01
56 6 0.04
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGG
Found at i:21256 original size:27 final size:28
Alignment explanation
Indices: 21193--21268 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
21183 GAAATAAAGT
***
21193 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
21221 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
21248 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
21269 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:21359 original size:51 final size:53
Alignment explanation
Indices: 20987--21374 Score: 182
Period size: 51 Copynumber: 7.3 Consensus size: 53
20977 AAATAACGAG
* * *
20987 GTTGGAGTATCCTCGATTATGAA-AAATTGGTATTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAGAAATT--AATGTTTTTGGAAATAAAATCGGA
** * * *
21041 GTTGGAGTATCCCCGATTA--AAGGGAAAATTGGTG-TTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTATGAA--G-AAATTAATGTTTTTGGAAATAAAATCGGA
* * * * *
21094 GTTGGAGTATCCCCGATTGTGGAA-AAATTAGTG-TTTTAGCAATAAAACCGG-
1 GTTGGAGTATCCCCGATTAT-GAAGAAATTAATGTTTTTGGAAATAAAATCGGA
* * * * *
21145 GATTGGAGTATCCCCGATTATGAA-AAATCAAT-ATTATGGAAATAAAGTCGGG
1 G-TTGGAGTATCCCCGATTATGAAGAAATTAATGTTTTTGGAAATAAAATCGGA
* *** * **** * * *
21197 GTTGGAGTATCCCCTCGGA-AAT-AACGGGGTTGGA-GTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTAT-CCC-C-GATTATGAA-GAAATT-AATGT-TTTTGGA-AATAAAATCGGA
* **
21252 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAGAAATTAATG-TTTTTGGAAATAAAATCGGA
21306 GTTGGAGTATCCCCGATTAT--AGAAAATTAATG-TTTT-GAAACTAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAG-AAATTAATGTTTTTGGAAA-TAAAATCGGA
* *
21357 GTTGGAATGTCCCCGATT
1 GTTGGAGTATCCCCGATT
21375 GTGGAGAATT
Statistics
Matches: 255, Mismatches: 52, Indels: 57
0.70 0.14 0.16
Matches are distributed among these distances:
50 4 0.02
51 62 0.24
52 56 0.22
53 55 0.22
54 50 0.20
55 15 0.06
56 11 0.04
57 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (53 bp):
GTTGGAGTATCCCCGATTATGAAGAAATTAATGTTTTTGGAAATAAAATCGGA
Found at i:23751 original size:13 final size:13
Alignment explanation
Indices: 23733--23758 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23723 ACAAAGATCC
23733 ATGTATCGATACA
1 ATGTATCGATACA
23746 ATGTATCGATACA
1 ATGTATCGATACA
23759 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:23754 original size:33 final size:33
Alignment explanation
Indices: 23712--23778 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
23702 AAAATTTTCA
***
23712 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
23745 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
23778 A
1 A
23779 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:23819 original size:13 final size:13
Alignment explanation
Indices: 23801--23825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23791 TAGCTAATTA
23801 TGTATCGATACAT
1 TGTATCGATACAT
23814 TGTATCGATACA
1 TGTATCGATACA
23826 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:23908 original size:21 final size:20
Alignment explanation
Indices: 23882--23960 Score: 95
Period size: 21 Copynumber: 3.8 Consensus size: 20
23872 GTTGGGACCC
23882 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGTA-AA
**
23903 TGTATCGATACATTCCATAAA
1 TGTATCGATACATT-TGTAAA
**
23924 TGTATCGATACATTCTACAAA
1 TGTATCGATACATT-TGTAAA
23945 TGTATCGATACATTTG
1 TGTATCGATACATTTG
23961 GATTTTTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
20 1 0.02
21 49 0.94
22 2 0.04
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTATCGATACATTTGTAAA
Found at i:24870 original size:27 final size:27
Alignment explanation
Indices: 24730--24870 Score: 65
Period size: 28 Copynumber: 5.1 Consensus size: 27
24720 TGTGGGCTTT
*
24730 GAAAGGCGTCCTGCTCTTTGAGGACT-
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
** * * * *
24756 GAAAGGTG-CCACCAACTTGTGTGGGCTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGACTG
*
24784 TAAGAGGTGTCCTGCTCTTTGAGGACTG
1 GAA-AGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
24812 GAAA-ATG-CCACCAACTTGTGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
24840 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
24867 GAAA
1 GAAA
24871 ATGCCACCAA
Statistics
Matches: 77, Mismatches: 28, Indels: 19
0.62 0.23 0.15
Matches are distributed among these distances:
25 6 0.08
26 15 0.19
27 17 0.22
28 20 0.26
29 13 0.17
30 6 0.08
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:25116 original size:59 final size:59
Alignment explanation
Indices: 24706--25576 Score: 1190
Period size: 59 Copynumber: 14.9 Consensus size: 59
24696 GGAGTAAAAA
*
24706 GTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCGTCCTGCTCTTTGAGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAG
* *
24761 GTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTGTCCTGCTCTTTGAGGACTGGAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAG
* * *
24816 ATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGACTGGAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAG
* * *
24871 ATGCCACCAACTTGTGTGGGCTTT----G-AAAGGGGTCCTGCTCTTTGGGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAG
* **
24926 GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGTATCCTGCTCTTTGAGGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
* *
24986 GTGCCACCAACTTGTGTGGGCTTTGAAAGGTAAAA-GCATCCTGCTCTTTGAGGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAGGCGTCCTGCTCTTTGAGGACTGAAG
* *
25046 GTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGATTGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
*
25105 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
25164 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
*
25223 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAAGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
*
25282 GTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
* ** *
25341 GTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAAACGTCCCGCTCTTTGAGGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
* * * *
25400 GTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAAGCATCCTGCTCTTTGAGGACTAGAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAG
* * *
25460 ATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTACTCTTTGAGGACTGGAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAG
* * * *
25520 ATGCCACCAACTTGTGGGGGCTTTTAAAAGGAAAAGGCATCCTGCTCTCTGAGGACT
1 GTGCCACCAACTTGTGTGGGC-TTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT
25577 AAAAGGCGGA
Statistics
Matches: 757, Mismatches: 42, Indels: 27
0.92 0.05 0.03
Matches are distributed among these distances:
53 1 0.00
54 1 0.00
55 171 0.23
56 1 0.00
57 1 0.00
58 4 0.01
59 364 0.48
60 157 0.21
61 33 0.04
62 24 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (59 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAG
Found at i:26571 original size:12 final size:12
Alignment explanation
Indices: 26554--26586 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
26544 TCTCTTTTTC
26554 TTTGTTTTGTTT
1 TTTGTTTTGTTT
26566 TTTGTTTTGTTT
1 TTTGTTTTGTTT
*
26578 TTTTTTTTG
1 TTTGTTTTG
26587 AAGAGAAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
TTTGTTTTGTTT
Found at i:26574 original size:17 final size:17
Alignment explanation
Indices: 26554--26586 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26544 TCTCTTTTTC
26554 TTTGTTTTGTTTTTTGT
1 TTTGTTTTGTTTTTTGT
*
26571 TTTGTTTTTTTTTTTG
1 TTTGTTTTGTTTTTTG
26587 AAGAGAAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (17 bp):
TTTGTTTTGTTTTTTGT
Done.