genome.fa.s2410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2410
Parameters: 2 7 7 80 10 50 1000
Length:  226555

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1344--1423	23	3.6	22	74	24	69	78	13	7	0	0.95
1360--1420	31	1.9	31	86	3	86	81	11	6	0	0.85
1380--1417	19	1.9	19	94	5	67	89	5	5	0	0.59
1358--1420	21	3.0	21	83	2	72	82	11	6	0	0.83
1381--1419	10	3.9	10	83	10	53	89	5	5	0	0.58
1577--1636	24	2.5	24	94	0	102	93	3	3	0	0.42
1577--1636	1	60.0	1	86	0	84	93	3	3	0	0.42
1648--1716	30	2.2	32	80	12	81	75	23	1	0	0.89
1675--1731	16	3.3	19	70	25	54	73	22	3	0	0.98
1753--1813	31	1.9	32	83	9	81	75	21	3	0	0.94
1771--1852	26	2.9	27	77	14	69	78	17	2	2	0.98
1742--1855	42	2.7	42	78	8	106	75	20	2	1	1.01
1751--1830	36	2.2	36	78	12	83	76	20	2	1	0.97
1891--1965	18	4.4	17	85	8	98	82	17	0	0	0.67
1891--1991	28	3.6	28	73	17	84	77	18	3	0	0.93
2055--2114	20	3.0	20	80	7	59	73	21	1	3	1.07
2132--2178	25	1.9	24	86	4	67	78	14	4	2	0.99
2382--2416	16	2.2	16	89	0	52	82	14	0	2	0.77
2590--2652	12	5.6	11	73	17	58	66	31	0	1	1.01
2579--2639	23	2.6	24	85	12	74	70	27	0	1	0.97
2590--2650	23	2.8	21	80	14	61	67	31	0	1	1.01
2576--2663	22	4.0	21	74	11	68	70	27	1	1	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3958--4011	27	1.9	28	82	14	67	51	48	0	0	1.00
3948--4010	22	2.7	23	72	16	58	46	52	1	0	1.10
4360--4445	4	23.0	4	75	15	51	24	75	0	0	0.80
4362--4450	7	12.4	7	77	16	58	24	75	0	0	0.81
4375--4412	10	3.9	10	89	6	60	10	89	0	0	0.49
4381--4419	17	2.2	19	90	9	64	10	89	0	0	0.48
4375--4419	19	2.4	19	88	7	65	13	86	0	0	0.57
4819--4877	23	2.7	21	75	14	57	59	40	0	0	0.97
5103--5141	14	2.7	15	88	8	62	66	33	0	0	0.92
5518--5585	27	2.5	26	76	6	64	47	51	1	0	1.09
5540--5596	26	2.2	27	84	6	73	42	54	1	1	1.21
5894--5970	31	2.5	32	77	10	81	28	71	0	0	0.86
5935--5991	25	2.3	25	78	6	62	28	70	1	0	0.98
6022--6079	20	2.9	19	77	7	62	82	17	0	0	0.66
6021--6702	9	71.4	9	69	19	191	79	12	6	1	1.00
6223--6695	1	473.0	1	70	0	154	81	9	7	1	0.95
6140--6434	151	1.9	154	79	9	334	78	14	3	2	0.98
6795--6847	18	2.8	18	83	8	70	77	11	11	0	1.00
6905--7054	1	150.0	1	72	0	75	83	8	6	2	0.88
7214--9635	333	7.4	328	80	9	2538	28	23	17	30	1.97
9475--9805	170	1.9	171	86	5	474	32	19	17	30	1.95
9646--22776	329	39.9	329	86	3	17372	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23175--23200	13	2.0	13	100	0	52	38	15	15	30	1.88
23157--23221	34	2.0	32	87	6	94	41	18	13	26	1.88
29382--29420	13	3.0	13	96	0	69	30	15	20	33	1.94
29540--29586	21	2.3	20	78	10	51	34	19	2	44	1.62
31987--32012	13	2.0	13	100	0	52	38	15	15	30	1.88
31969--32033	34	2.0	32	87	6	94	41	18	13	26	1.88
32784--49987	327	52.5	327	91	1	26545	28	23	17	29	1.97
32784--52943	655	30.9	656	90	1	29741	28	23	17	29	1.97
50009--52943	327	9.0	327	90	1	4429	27	23	17	30	1.97
52947--53812	328	2.6	326	90	2	1342	29	22	16	31	1.96
54448--55413	327	3.0	325	90	2	1479	27	24	17	30	1.97
55417--56287	333	2.6	328	92	0	1436	29	23	16	30	1.96
56309--59522	328	9.8	328	90	0	4844	28	24	17	30	1.97
59544--195482	328	412.1	328	83	6	139296	28	23	18	29	1.98
59544--226551	656	253.6	656	86	4	214380	28	23	18	29	1.98
95910--96109	100	2.0	100	90	1	312	20	29	20	30	1.97
101896--102095	100	2.0	100	91	1	321	20	30	20	30	1.97
105916--106115	100	2.0	100	91	1	321	20	30	20	30	1.97
150323--150522	100	2.0	100	90	1	312	20	28	20	32	1.97
150751--150950	100	2.0	100	91	1	321	21	29	19	30	1.97
152160--152353	100	1.9	100	93	2	336	20	29	18	31	1.96
152585--152784	100	2.0	100	93	1	339	21	29	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195482--226551	328	95.0	328	90	1	47066	28	23	17	30	1.97

Tables:   1

The End!