Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2412

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8124
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37


Found at i:1683 original size:40 final size:40

Alignment explanation


    Indices: 1628--1714  Score: 147
    Period size: 40  Copynumber: 2.2  Consensus size: 40

       1618 GAAGTATGCA

                                           *        
       1628 TTGATCTGTGCTTGTTGATGACTCTTAGTTACTTATGATC
          1 TTGATCTGTGCTTGTTGATGACTCTTAGTTAATTATGATC

                      *                            *
       1668 TTGATCTGTGGTTGTTGATGACTCTTAGTTAATTATGATT
          1 TTGATCTGTGCTTGTTGATGACTCTTAGTTAATTATGATC

                   
       1708 TTGATCT
          1 TTGATCT

       1715 TTGGAACAGA


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  40   44  1.00

ACGTcount: A:0.18, C:0.11, G:0.21, T:0.49


Consensus pattern (40 bp):   
TTGATCTGTGCTTGTTGATGACTCTTAGTTAATTATGATC
Done.