Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2413
Parameters: 2 7 7 80 10 50 1000
Length:  73481

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7721--7771
27
1.9
27
92
4
86
27
19
33
19
1.96
10066--10140
20
3.8
20
80
3
80
40
12
13
34
1.81
10063--10140
40
2.0
39
87
2
111
39
12
12
34
1.82
11465--11500
14
2.5
15
90
4
56
33
0
2
63
1.08
18389--18433
21
2.1
21
84
8
56
46
0
2
51
1.13
21108--21166
28
2.1
28
84
6
75
44
10
10
35
1.72
21959--21992
18
1.9
17
88
5
50
38
5
14
41
1.70
22453--22478
11
2.4
11
100
0
52
38
15
11
34
1.83
23165--23209
3
15.0
3
100
0
90
66
0
0
33
0.92
24225--24259
16
2.1
17
89
5
54
34
2
0
62
1.10
24292--24366
38
2.0
37
82
7
89
56
0
1
42
1.08
24805--24841
14
2.6
14
91
4
56
86
0
13
0
0.57
24807--24841
16
2.3
15
95
5
61
88
0
11
0
0.51
30170--30202
16
2.1
16
100
0
66
30
6
21
42
1.77
33486--33510
13
1.9
13
100
0
50
32
16
16
36
1.90
33465--33530
32
2.0
33
88
2
98
39
15
12
33
1.84
37905--37960
18
3.1
18
76
16
53
48
0
1
50
1.11
39627--39665
21
2.0
20
90
10
62
41
0
0
58
0.98
40094--40126
17
1.9
17
100
0
66
69
12
6
12
1.35
40373--40406
6
5.7
6
85
0
50
50
11
17
20
1.77
40373--40408
18
2.0
18
94
0
63
47
11
19
22
1.80
49626--49661
18
2.0
18
94
0
63
44
5
8
41
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56128--56184
25
2.2
25
81
6
60
42
1
1
54
1.21
56154--56193
19
2.1
19
86
9
55
42
0
0
57
0.98
56351--56384
17
2.0
17
94
0
59
67
0
0
32
0.91
56574--56615
21
2.1
19
86
13
57
59
0
0
40
0.97
56733--56786
6
9.0
6
91
0
90
14
0
3
81
0.82
58598--58764
87
1.9
87
88
0
253
39
8
14
37
1.77
58993--59049
18
3.4
16
77
15
53
68
5
0
26
1.11
59486--59662
94
1.9
93
80
5
205
38
9
6
45
1.62
60698--60728
2
15.5
2
93
0
53
54
0
0
45
0.99
60921--60975
22
2.7
21
78
13
62
38
0
0
61
0.96
60923--60978
20
2.8
20
76
10
60
41
0
0
58
0.98
61080--61112
2
16.0
2
93
6
57
48
3
0
48
1.17
64417--64483
31
2.2
31
88
0
98
28
8
19
43
1.81
64417--64498
31
2.6
31
82
3
85
28
12
20
39
1.89
72231--72287
21
2.7
21
100
0
114
40
17
3
38
1.67

Tables:   1

The End!