Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2415
Parameters: 2 7 7 80 10 50 1000
Length:  48809

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2420--2476
19
3.0
20
87
7
82
33
17
15
33
1.92
2781--2998
34
6.5
34
84
5
273
40
26
7
25
1.82
2779--2998
67
3.3
67
87
1
314
40
26
7
25
1.82
5819--5896
28
2.8
28
80
7
86
50
1
1
47
1.17
9890--9920
2
15.5
2
100
0
62
0
48
0
51
1.00
11389--11425
2
18.5
2
100
0
74
0
48
0
51
1.00
14877--14908
16
1.9
17
93
6
57
34
9
0
56
1.32
15562--15591
13
2.2
14
94
5
53
53
6
0
40
1.27
17430--17548
31
3.8
31
93
2
195
35
24
25
15
1.94
18427--18452
3
8.7
3
100
0
52
69
0
0
30
0.89
23249--23287
2
19.5
2
94
0
69
0
51
0
48
1.00
23524--23557
16
2.1
16
88
0
50
64
0
8
26
1.22
24553--24591
21
2.0
21
85
10
55
58
0
5
35
1.20
24588--24650
22
3.0
22
77
13
69
41
0
0
58
0.98
24587--24689
40
2.7
37
71
15
86
40
0
0
59
0.98
25442--25485
21
2.1
21
83
8
54
70
2
2
25
1.10
25558--25606
19
2.5
19
75
15
55
57
2
0
40
1.10
25564--25601
20
1.9
20
84
10
51
55
2
0
42
1.14
26055--26103
25
2.0
25
84
8
64
36
0
0
63
0.95
26056--26115
18
3.6
18
72
14
58
40
0
0
60
0.97
26056--26122
32
2.1
33
85
2
91
41
0
0
58
0.98
26945--27238
147
2.0
147
99
0
579
28
13
20
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27205--27329
61
2.0
61
93
3
216
26
14
16
42
1.87
35413--35448
16
2.2
16
90
0
54
58
2
0
38
1.13
38163--38192
2
15.0
2
100
0
60
50
0
0
50
1.00
38394--38426
17
1.9
17
88
11
50
48
6
0
45
1.27
47734--47797
20
3.3
20
82
4
78
34
1
0
64
1.03
47780--47813
13
2.8
12
86
8
50
38
0
0
61
0.96

Tables:   1

The End!