Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold242
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 756895
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:2670 original size:20 final size:20
Alignment explanation
Indices: 2645--2698 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
2635 ATTAAGGAAA
2645 TGTATCGATACATCGATCTT
1 TGTATCGATACATCGATCTT
2665 TGTATCGATACATCGATCTT
1 TGTATCGATACATCGATCTT
2685 TGTATCGATACATC
1 TGTATCGATACATC
2699 TAGGAAGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATCGATCTT
Found at i:5098 original size:52 final size:52
Alignment explanation
Indices: 5031--5164 Score: 155
Period size: 52 Copynumber: 2.6 Consensus size: 52
5021 TTAAGTTTCT
* *
5031 CAATTATT-CATAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACAC
1 CAATT-TTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* * * *
5082 CAATTTTCCTTTAATCGGAGATACTCCAACTCCGATTTTATTTCCAAAAACAT
1 CAATTTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* * *
5135 CAATTTTTCACAATCGAGGATACTCCAACC
1 CAATTTTCCATAATCGGGGATACTCCAACC
5165 TCGTTATTTC
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
50 2 0.03
51 6 0.09
52 46 0.68
53 14 0.21
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (52 bp):
CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
Found at i:5175 original size:31 final size:28
Alignment explanation
Indices: 5147--5223 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
5137 ATTTTTCACA
*
5147 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
* **
5175 ATCGGGGATACTCCAACCCCGTTACCTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
5203 --CGAGGGGATACTCCAACCCCG
1 ATCGA--GGATACTCCAACCCCG
5224 GCTTTATTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 2 0.05
28 40 0.95
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.22
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCCCGTTATTTC
Found at i:5268 original size:79 final size:79
Alignment explanation
Indices: 5177--5379 Score: 246
Period size: 79 Copynumber: 2.6 Consensus size: 79
5167 GTTATTTCAT
** * *
5177 CGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAAT-A
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCC-AAATCA
* * *
5241 TTGATTTCTCATAAT
65 TCGATTTCTCACAAC
* * * * * *
5256 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCTAATCCCGATTTTATTTCCTAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAATCAT
*
5321 CGATTTTTCACAAC
66 CGATTTCTCACAAC
* *
5335 CGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCGAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC
5380 TGTTATTATC
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 3 0.03
79 102 0.97
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAATCAT
CGATTTCTCACAAC
Found at i:10104 original size:13 final size:13
Alignment explanation
Indices: 10086--10111 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10076 AATTTTGGGA
10086 TGTATCGATACAT
1 TGTATCGATACAT
10099 TGTATCGATACAT
1 TGTATCGATACAT
10112 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:10218 original size:20 final size:19
Alignment explanation
Indices: 10171--10225 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
10161 GCCAATCACC
*
10171 TGTATCGATACATTCTTTGTA
1 TGTATCGATACA-T-TTGGTA
*
10192 AGTATCGATACATTTGGTCA
1 TGTATCGATACATTTGGT-A
10212 TGTATCGATACATT
1 TGTATCGATACATT
10226 GTATCAATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.13
20 15 0.50
21 11 0.37
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTGGTA
Found at i:10821 original size:88 final size:85
Alignment explanation
Indices: 10662--10941 Score: 291
Period size: 87 Copynumber: 3.2 Consensus size: 85
10652 AGAAACAAAG
* * * * *
10662 GGAAAA-TTCAATTTTTTTGAAAAAT-AAAGTTAGAGTATCCCCTCGGGAGAATGAAGATGGAGT
1 GGAAAATTTCAATTTTTTTGTAAAATGAGA-TTGGAGTAT-CCCTCGAGA-AATGGA-ATGGAGT
10725 TTAC-CAAGGATAAAATTATACGAA
62 TT-CTCAAGGATAAAATTATACGAA
10749 GGAAAA-TTCAATTTTTTTGGTAAAATGAGATTGGAGTATCTCCTCGAAGAAATGGAATGGAGTT
1 GGAAAATTTCAATTTTTTT-GTAAAATGAGATTGGAGTATC-CCTCG-AGAAATGGAATGGAGTT
*
10813 TCCTCAAGGATAAAATTATAGGAA
63 T-CTCAAGGATAAAATTATACGAA
* * * * *
10837 GGAAAATTTGAA-TTTTTTGTAAAATGGGGTTGGAGTATCCCTTTGGAGAAATGGGATGGAGTTT
1 GGAAAATTTCAATTTTTTTGTAAAATGAGATTGGAGTATCCC--TCGAGAAATGGAATGGAGTTT
* * *
10901 TTCAAGGACAAAATTATACAAA
64 CTCAAGGATAAAATTATACGAA
*
10923 GGAAAATTTAAATTTTTTT
1 GGAAAATTTCAATTTTTTT
10942 AGAACGGAGT
Statistics
Matches: 167, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
86 31 0.19
87 71 0.43
88 57 0.34
89 8 0.05
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (85 bp):
GGAAAATTTCAATTTTTTTGTAAAATGAGATTGGAGTATCCCTCGAGAAATGGAATGGAGTTTCT
CAAGGATAAAATTATACGAA
Found at i:10980 original size:86 final size:83
Alignment explanation
Indices: 10717--10973 Score: 248
Period size: 86 Copynumber: 3.0 Consensus size: 83
10707 GGAGAATGAA
* * * *
10717 GATGGAGTTTACCAAGGATAAAATTATACGAAGGAAAA-TTCAATTTTTTTGGTAAAATGAGATT
1 GATGGAGTTTATCAAGGATAAAATTATACGAAGGAAAATTTAAATTTTTTTAG--AAAGGAG-TT
* *
10781 GGAGTATCTCCTCGAAGAAATG
63 GGAGTATCTCTTAG-AGAAATG
* * * *
10803 GAATGGAGTTTCCTCAAGGATAAAATTATAGGAAGGAAAATTTGAATTTTTTGTA-AAATGGGGT
1 G-ATGGAGTTT-ATCAAGGATAAAATTATACGAAGGAAAATTTAAATTTTTT-TAGAAA-GGAGT
* *
10867 TGGAGTATCCCTTTGGAGAAATGG
62 TGGAGTATCTC-TTAGAGAAAT-G
* * * *
10891 GATGGAGTTTTTCAAGGACAAAATTATACAAAGGAAAATTTAAATTTTTTTAGAACGGAGTTGGA
1 GATGGAGTTTATCAAGGATAAAATTATACGAAGGAAAATTTAAATTTTTTTAGAAAGGAGTTGGA
*
10956 ATATCTTCTTAGAGAAAT
66 GTATC-TCTTAGAGAAAT
10974 AAGGATGTAG
Statistics
Matches: 142, Mismatches: 20, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
85 23 0.16
86 39 0.27
87 38 0.27
88 31 0.22
89 10 0.07
90 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (83 bp):
GATGGAGTTTATCAAGGATAAAATTATACGAAGGAAAATTTAAATTTTTTTAGAAAGGAGTTGGA
GTATCTCTTAGAGAAATG
Found at i:12323 original size:31 final size:31
Alignment explanation
Indices: 12288--12358 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
12278 AACCAATATC
*
12288 AGCATGGAAACACACAAAGGGGACATTTATT
1 AGCATGGAAACAAACAAAGGGGACATTTATT
* * *
12319 AGCATGCAAACAAACAAAGGTGACATTTCTT
1 AGCATGGAAACAAACAAAGGGGACATTTATT
12350 A-CATGGAAA
1 AGCATGGAAA
12359 TGGTAACAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 7 0.20
31 28 0.80
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.20
Consensus pattern (31 bp):
AGCATGGAAACAAACAAAGGGGACATTTATT
Found at i:15081 original size:13 final size:13
Alignment explanation
Indices: 15063--15090 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15053 ATATTATGCT
15063 TTGTATCGATACA
1 TTGTATCGATACA
15076 TTGTATCGATACA
1 TTGTATCGATACA
15089 TT
1 TT
15091 TTCATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:15123 original size:20 final size:19
Alignment explanation
Indices: 15073--15129 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
15063 TTGTATCGAT
**
15073 ACATTGTATCGATACATTT
1 ACATTGTATCGATACATGG
* *
15092 TCATTATATCGATACATGG
1 ACATTGTATCGATACATGG
15111 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
15130 AAATTGGCAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:21237 original size:10 final size:10
Alignment explanation
Indices: 21202--21235 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
21192 CCTAACATCT
21202 TTTCATCAAA
1 TTTCATCAAA
*
21212 ATTCATCAAA
1 TTTCATCAAA
*
21222 TTTCTTCAAA
1 TTTCATCAAA
21232 TTTC
1 TTTC
21236 TTATTTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (10 bp):
TTTCATCAAA
Found at i:21263 original size:22 final size:21
Alignment explanation
Indices: 21225--21265 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
21215 CATCAAATTT
* *
21225 CTTCAAATTTCTTATTTTTCA
1 CTTCAAAATACTTATTTTTCA
21246 CTTCAAAATACTTCATTTTT
1 CTTCAAAATACTT-ATTTTT
21266 TATCAAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.54
Consensus pattern (21 bp):
CTTCAAAATACTTATTTTTCA
Found at i:24132 original size:97 final size:97
Alignment explanation
Indices: 24016--24279 Score: 332
Period size: 97 Copynumber: 2.7 Consensus size: 97
24006 ATAAGTGAAG
* * * * *
24016 ATAAGATTTAAACCTTGACAAGTTTAAAAATAAGGTTGGAGTATCCCCTCGGAAGAATAAGGTTA
1 ATAAGATTTAAATCTTGACAAGTTTAAAAACAAGGTTGGAGTATCTCCTCGAAAAAATAAGGTTA
* * * *
24081 GATTATCTTC-ATGGATGACAAATTAAGCAAAA
66 GAGTAAC-CCAATGGATGACAAATTAAGAAAAA
* ** * * ** *
24113 TTAAGATTTAAATCTTGACAAGTTTAAAAACGGGGTTGGAGTATCTCTTCAAAAAAATGGGGTTG
1 ATAAGATTTAAATCTTGACAAGTTTAAAAACAAGGTTGGAGTATCTCCTCGAAAAAATAAGGTTA
24178 GAGTAACCCAATGGATGACAAATTAAGAAAAA
66 GAGTAACCCAATGGATGACAAATTAAGAAAAA
* * *
24210 ATAAGATTTAAATCTTGACAAGTTTAAAAACAAGGTTGGAATATCTCCTCGAAAAAATAGGGTTG
1 ATAAGATTTAAATCTTGACAAGTTTAAAAACAAGGTTGGAGTATCTCCTCGAAAAAATAAGGTTA
24275 GAGTA
66 GAGTA
24280 TTCTCTTGAA
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
96 1 0.01
97 141 0.99
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (97 bp):
ATAAGATTTAAATCTTGACAAGTTTAAAAACAAGGTTGGAGTATCTCCTCGAAAAAATAAGGTTA
GAGTAACCCAATGGATGACAAATTAAGAAAAA
Found at i:27942 original size:10 final size:10
Alignment explanation
Indices: 27927--27957 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
27917 CCATTTCATA
27927 TTTTTTTCTT
1 TTTTTTTCTT
27937 TTTTTTTCTT
1 TTTTTTTCTT
*
27947 TTTCTTTCTT
1 TTTTTTTCTT
27957 T
1 T
27958 CTTCTTCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:27956 original size:20 final size:21
Alignment explanation
Indices: 27927--27984 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 21
27917 CCATTTCATA
*
27927 TTTT-TTTCTTTTTTT-TTCT
1 TTTTCTTTCTTTTTTTCATCT
27946 TTTTCTTTCTTTCTTCTTCATCT
1 TTTTCTTTCTTT-TT-TTCATCT
27969 TCTTTCTTTCTTTTTT
1 T-TTTCTTTCTTTTTT
27985 ACCTAACTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 4 0.12
20 7 0.21
21 2 0.06
22 3 0.09
23 6 0.18
24 11 0.33
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCTTTCTTTTTTTCATCT
Found at i:29260 original size:32 final size:32
Alignment explanation
Indices: 29211--29643 Score: 645
Period size: 32 Copynumber: 13.6 Consensus size: 32
29201 AAAATCGTGA
* * *
29211 TTTGAAAAGGGTTGCCACTGACTTGCGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
29243 TTTTAAATGGGTTGCCACCGACTTGTATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * **
29275 TTTGAAAAGGGTTGCCACCGATTTGTGTACGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
29307 TTTGAAATGGGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
29339 TTTGGAATAGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
29371 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* **
29403 TTTGGAATGGGTCACCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* **
29435 TTTGGAATGGGTCACCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
29467 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
29499 TTTGAAAAT-GATTGCCACCGACTTGTGTGGGC
1 TTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
*
29531 TTTGAAATGGGTTGCCACCGACTTGTGTGGCC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
29563 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
29595 TTTGAAATGGGTTGCCACTGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
29627 TTTGAAATGGG-TGCCAC
1 TTTGAAATGGGTTGCCAC
29644 AAAGTTGTGG
Statistics
Matches: 365, Mismatches: 34, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
31 10 0.03
32 352 0.96
33 3 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:29760 original size:27 final size:27
Alignment explanation
Indices: 29657--31110 Score: 2260
Period size: 27 Copynumber: 53.3 Consensus size: 27
29647 GTTGTGGGTT
* * *
29657 TTAAAAGAGTGCCATGGAGTTGTGGATT
1 TTAAAAGGGTGCCACGGAGTTGTGGA-C
*
29685 TTAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
29712 TTAAAAGAGATGCCACGGAGTTATGGAC
1 TTAAAAG-GGTGCCACGGAGTTGTGGAC
*
29740 TTAAAAGGGTGCCACGGAGTTGTGGTC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
29767 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
29794 TTAAAAGGGTGCCATGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
29821 TAAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
** *
29848 TTTAAAAGGGTGCCATAGATTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
29876 TTAAAAGAGATGCCACGGAGTTATGGAC
1 TTAAAAG-GGTGCCACGGAGTTGTGGAC
*
29904 TTAAAAGTGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
29931 TTAAAAGGGTGCCACGGAGTTGTGGTC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
29958 TTAAAAGGGATGCCACGGAGTTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
29986 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30013 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
30040 TTAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30067 TTTAAAAGGGATGCCACGGAGTTGTGGAC
1 -TTAAAAGGG-TGCCACGGAGTTGTGGAC
*
30096 TTAAAAGCGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30123 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30150 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
30177 TTAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30204 TTTAAAAGGGATGCCACGGAGTTGTGGAC
1 -TTAAAAGGG-TGCCACGGAGTTGTGGAC
*
30233 TTAAAAGCGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30260 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30287 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
30314 TTAAAAGGATGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30341 TTAAAAGGGTGCCACGAAGTTATGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
30368 TTAAAAGGGTGCCACGGAGTTGTGGTC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30395 TTAAAAGGGATGCCACGGAGTTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
30423 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30450 TTAAAAGGGTGCTAGGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30477 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30504 TTAAAAGGATGCCATGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30531 TTAAAAGGGTGCCACGAAGTTATGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
30558 TTAAAAGGGTGCCACGGAGTTGTGGTC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30585 TTAAAAGGGATGCCACGGAGTTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
30613 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
30640 TTAAAAGGGTTCTAGGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
30667 TTAAAAGGGTTCTAGGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30694 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
30721 TTAAAAGGATGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30748 TTTAAAAGGATGCCACGAAGTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
30776 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30803 TAAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
**
30830 TTTAAAAGGGTGCCACCAAGTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
30858 TTAAAAGAGATGCCATGGAGTTATGGAC
1 TTAAAAG-GGTGCCACGGAGTTGTGGAC
30886 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30913 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
30940 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
** *
30967 TTAAAAGAATGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30994 TTTAAAAGGATGCCACGAAGTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
*
31022 TTAAAAGGAATGCCACGGAGTTGTGGAC
1 TTAAAAGG-GTGCCACGGAGTTGTGGAC
31050 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
31077 TTAAAAGGGTGCTACGGAGTTGTGGGC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
31104 TTTAAAG
1 TTAAAAG
31111 AGGTCACAAT
Statistics
Matches: 1318, Mismatches: 93, Indels: 31
0.91 0.06 0.02
Matches are distributed among these distances:
27 958 0.73
28 326 0.25
29 34 0.03
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (27 bp):
TTAAAAGGGTGCCACGGAGTTGTGGAC
Found at i:29907 original size:164 final size:162
Alignment explanation
Indices: 29657--31110 Score: 2248
Period size: 164 Copynumber: 8.9 Consensus size: 162
29647 GTTGTGGGTT
* * *
29657 TTAAAAGAGTGCCATGGAGTTGTGGATTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGA
1 TTAAAAGGGTGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAG-GA
* *
29722 TGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGGAGT
64 TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
*
29787 TGTGGACTTAAAAGGGTGCCATGGAGTTGTGGAC
129 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
29821 TAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCATAGATTTGTGGACTTAAAAGAGA
1 TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAG-GA
* *
29886 TGCCACGGAGTTATGGACTTAAAAGTGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
64 TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
*
29951 TGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGAC
129 TGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGAC
* *
29986 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATG
* *
30051 CCACAGAGTTGTGGACTTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGCGTGCCACGGAGT
66 CCACGGAGTTGTGGAC-TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
30116 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
129 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
30150 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGGA
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGAC-TTAAAA-GGA
*
30215 TGCCACGGAGTTGTGGACTTAAAAGCGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
64 TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
30280 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
129 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
30314 TTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC-GAAGTTATGGACTTAAAAGGGT
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAG-AGTTGTGGACTTAAAAGGAT
*
30378 GCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
65 GCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
* *
30443 TGTGGACTTAAAAGGGTGCTAGGGAGTTGTGGAC
129 TGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* ** *
30477 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGATGCCATGGAGTTGTGGACTTAAAAGGGTG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATG
* * *
30542 CCACGAAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTT
66 CCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTT
30607 GTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
130 GTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* * * * * ** *
30640 TTAAAAGGGTTCTAGGGAGTTGTGGACTTAAAAGGGTTCTAGGGAGTTGTGGACTTAAAAGGGTG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATG
* * *
30705 CCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGAAGTT
66 CCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTT
30770 GTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
130 GTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* *
30803 TAAAAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACCA-AGTTGTGGACTTAAAAGAG
1 TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCA-CAGAGTTGTGGACTTAAAAG-G
* *
30867 ATGCCATGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
63 ATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
30932 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
128 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
** * *
30967 TTAAAAGAATGCCACAGAGTTGTGGACTTTAAAAGGATGCCAC-GAAGTTGTGGACTTAAAAGGA
1 TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACAG-AGTTGTGGACTTAAAAGG-
*
31031 ATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCTACGGAG
63 ATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
* *
31096 TTGTGGGCTTTAAAG
128 TTGTGGACTTAAAAG
31111 AGGTCACAAT
Statistics
Matches: 1194, Mismatches: 79, Indels: 34
0.91 0.06 0.03
Matches are distributed among these distances:
162 53 0.04
163 383 0.32
164 587 0.49
165 152 0.13
166 19 0.02
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (162 bp):
TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATG
CCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTG
TGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
Found at i:38880 original size:27 final size:27
Alignment explanation
Indices: 38821--38874 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
38811 GAACGTGACA
38821 AAGTGGTTAGTGGTTGTTTTTCATTAT
1 AAGTGGTTAGTGGTTGTTTTTCATTAT
38848 AAGTGGTTAGTGGTTGTTTTTCATTAT
1 AAGTGGTTAGTGGTTGTTTTTCATTAT
38875 GGGTGGCCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.04, G:0.26, T:0.52
Consensus pattern (27 bp):
AAGTGGTTAGTGGTTGTTTTTCATTAT
Found at i:38930 original size:10 final size:10
Alignment explanation
Indices: 38915--38945 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
38905 CCATTTCATA
38915 TTTTTTTCTT
1 TTTTTTTCTT
38925 TTTTTTTCTT
1 TTTTTTTCTT
*
38935 TTTCTTTCTT
1 TTTTTTTCTT
38945 T
1 T
38946 CTTCTTCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:38944 original size:20 final size:21
Alignment explanation
Indices: 38915--38972 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 21
38905 CCATTTCATA
*
38915 TTTT-TTTCTTTTTTT-TTCT
1 TTTTCTTTCTTTTTTTCATCT
38934 TTTTCTTTCTTTCTTCTTCATCT
1 TTTTCTTTCTTT-TT-TTCATCT
38957 TCTTTCTTTCTTTTTT
1 T-TTTCTTTCTTTTTT
38973 ACCTAACTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 4 0.12
20 7 0.21
21 2 0.06
22 3 0.09
23 6 0.18
24 11 0.33
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCTTTCTTTTTTTCATCT
Found at i:41297 original size:20 final size:20
Alignment explanation
Indices: 41274--41321 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
41264 ACATTTCAGA
*
41274 TATGTATCGATACATTCATT
1 TATGTATCGATACATTCACT
*
41294 TATGTATCGATATATTCACT
1 TATGTATCGATACATTCACT
41314 TATTGTAT
1 TA-TGTAT
41322 TAATACAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.48
Consensus pattern (20 bp):
TATGTATCGATACATTCACT
Found at i:43442 original size:15 final size:16
Alignment explanation
Indices: 43422--43456 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
43412 TAAATTTTGA
43422 TTCAGGTTTAA-CTTT
1 TTCAGGTTTAAGCTTT
43437 TTCAGGTTTAAGCTTT
1 TTCAGGTTTAAGCTTT
43453 TTCA
1 TTCA
43457 AGTAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.51
Consensus pattern (16 bp):
TTCAGGTTTAAGCTTT
Found at i:48158 original size:10 final size:10
Alignment explanation
Indices: 48143--48180 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
48133 TAAAAAACTT
48143 ATTTTTAATA
1 ATTTTTAATA
48153 ATTTTTAA-A
1 ATTTTTAATA
48162 ATATTTT-ATA
1 AT-TTTTAATA
48172 ATTTTTAAT
1 ATTTTTAAT
48181 TGATTTAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:48726 original size:24 final size:24
Alignment explanation
Indices: 48694--48739 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
48684 AATTTCTAAC
*
48694 AAAATTAAAAAATAAAATTTAATT
1 AAAAATAAAAAATAAAATTTAATT
48718 AAAAATAAAAAATAAAATTTAA
1 AAAAATAAAAAATAAAATTTAA
48740 AAAATTTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (24 bp):
AAAAATAAAAAATAAAATTTAATT
Found at i:49281 original size:65 final size:64
Alignment explanation
Indices: 49198--49348 Score: 176
Period size: 65 Copynumber: 2.3 Consensus size: 64
49188 AAAAGAAGTG
* * *
49198 GACTAGGGCAAAATCATCACGTCAACAAAGGATGACCAGAGCAAAAATTATAGGTCAAAAAAATT
1 GACTAGGGCGAAACCATCACGTCAACAAAGGATGACCAGAGCAAAAATTA-AGGTAAAAAAAATT
* * * * * * * *
49263 GACTAGGGCGAAACCATCATGTCAATAAAGGGTGATCAGGGCGAAATTTAAGTTAAAAAAAATT
1 GACTAGGGCGAAACCATCACGTCAACAAAGGATGACCAGAGCAAAAATTAAGGTAAAAAAAATT
* *
49327 AAGTAGGGCGAAACCATCACGT
1 GACTAGGGCGAAACCATCACGT
49349 GTTAACAAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
64 31 0.43
65 41 0.57
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (64 bp):
GACTAGGGCGAAACCATCACGTCAACAAAGGATGACCAGAGCAAAAATTAAGGTAAAAAAAATT
Found at i:49381 original size:66 final size:64
Alignment explanation
Indices: 49254--49387 Score: 169
Period size: 66 Copynumber: 2.1 Consensus size: 64
49244 ATTATAGGTC
* * * * **
49254 AAAAAAATTGACTAGGGCGAAACCATCATGTCAATAAAGGGTGATCAGGGCGAAATTTAAGTTA
1 AAAAAAATTAACTAGGGCGAAACCATCATGTCAACAAAGGGTGATCAAGACGAAACCTAAGTTA
* * *
49318 AAAAAAATTAAGTAGGGCGAAACCATCACGTGTTAACAAAGGGTGATCAAGATGAAACCTAAGTT
1 AAAAAAATTAACTAGGGCGAAACCATCA--TGTCAACAAAGGGTGATCAAGACGAAACCTAAGTT
49383 A
64 A
49384 AAAA
1 AAAA
49388 GAAGTTGACC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
64 26 0.44
66 33 0.56
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (64 bp):
AAAAAAATTAACTAGGGCGAAACCATCATGTCAACAAAGGGTGATCAAGACGAAACCTAAGTTA
Found at i:49503 original size:65 final size:65
Alignment explanation
Indices: 49423--49632 Score: 251
Period size: 65 Copynumber: 3.2 Consensus size: 65
49413 TAACAAAGAG
* * * * * * *
49423 TGACCAAAATGAAACCATCACGTCAAGAAAGGGTAACCAGGGTGACACCTAAGCCGAAAAGAAGT
1 TGACCAAAGTAAAACCATCACGTCAACAAAGGGTAACCAAGATGAAACCTAAGTCGAAAAGAAGT
* * * **
49488 TGACCAAAGTAAAACCATCACGTCAACAAAAGGCAACTAAGATGAAAGTTAAGTCGAAAAGAAGT
1 TGACCAAAGTAAAACCATCACGTCAACAAAGGGTAACCAAGATGAAACCTAAGTCGAAAAGAAGT
* * * *
49553 TGA-CAAGGTAAAACCATCACGTCAACAAAGGGTAATCAAGACGAAACCTAAGTCGGAAAGAAGT
1 TGACCAAAGTAAAACCATCACGTCAACAAAGGGTAACCAAGATGAAACCTAAGTCGAAAAGAAGT
* *
49617 TGACCAAGGTGAAACC
1 TGACCAAAGTAAAACC
49633 TAAATTGAAA
Statistics
Matches: 122, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
64 55 0.45
65 67 0.55
ACGTcount: A:0.45, C:0.20, G:0.21, T:0.14
Consensus pattern (65 bp):
TGACCAAAGTAAAACCATCACGTCAACAAAGGGTAACCAAGATGAAACCTAAGTCGAAAAGAAGT
Found at i:49579 original size:64 final size:65
Alignment explanation
Indices: 49469--49632 Score: 224
Period size: 64 Copynumber: 2.5 Consensus size: 65
49459 CCAGGGTGAC
* * *
49469 ACCTAAGCCGAAAAGAAGTTGACCAAAGTAAAACCATCACGTCAACAAAAGGCAA-CTAAGATGA
1 ACCTAAGTCGAAAAGAAGTTGACCAAGGTAAAACCATCACGTCAACAAAAGGCAATC-AAGACGA
49533 A
65 A
** * *
49534 AGTTAAGTCGAAAAGAAGTTGA-CAAGGTAAAACCATCACGTCAACAAAGGGTAATCAAGACGAA
1 ACCTAAGTCGAAAAGAAGTTGACCAAGGTAAAACCATCACGTCAACAAAAGGCAATCAAGACGAA
* *
49598 ACCTAAGTCGGAAAGAAGTTGACCAAGGTGAAACC
1 ACCTAAGTCGAAAAGAAGTTGACCAAGGTAAAACC
49633 TAAATTGAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
64 55 0.64
65 31 0.36
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.14
Consensus pattern (65 bp):
ACCTAAGTCGAAAAGAAGTTGACCAAGGTAAAACCATCACGTCAACAAAAGGCAATCAAGACGAA
Found at i:49698 original size:97 final size:96
Alignment explanation
Indices: 49543--49717 Score: 226
Period size: 97 Copynumber: 1.8 Consensus size: 96
49533 AAGTTAAGTC
* * *
49543 GAAAAGAAGTTGACAAGGTAAAACCATCACGTCAACAAAGGGTAATCAAGACGAAACCTAAGTCG
1 GAAAAGAAGTTGACAAGGTAAAACCATCACGTCAACAAAGGGCAACCAAGACAAAACCTAAGTC-
*
49608 GAAAGAA-GTTGACCAAGGTGAAACCTAAATT
65 GAAAAAATGTTGACCAAGGTGAAACCTAAATT
* * * * * * *
49639 GAAAAGAAGTTGACTAGGCTGAAATCATTACGTCAACGAAGGGCGACCAAGGCAAAACCTAAGTC
1 GAAAAGAAGTTGACAAGG-TAAAACCATCACGTCAACAAAGGGCAACCAAGACAAAACCTAAGTC
49704 GAAAAAATGTTGAC
65 GAAAAAATGTTGAC
49718 TAGGGCGAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
96 23 0.35
97 43 0.65
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.16
Consensus pattern (96 bp):
GAAAAGAAGTTGACAAGGTAAAACCATCACGTCAACAAAGGGCAACCAAGACAAAACCTAAGTCG
AAAAAATGTTGACCAAGGTGAAACCTAAATT
Found at i:50030 original size:64 final size:64
Alignment explanation
Indices: 49618--50235 Score: 311
Period size: 65 Copynumber: 9.6 Consensus size: 64
49608 GAAAGAAGTT
* * * * * * * * * * *
49618 GACCAAGGTGAAACCTAAATTGAAAAGAAGTTGACTAGGCTGAAATCATTACGTCAACGAAGGGC
1 GACCAAGATGAAACCTAAGTCGAAAAGAAGTTGACCAAGC-GAAACCATCATGTCAACAAAAGAC
*** * * **
49683 GACCAAGGCAAAACCTAAGTCGAAAA-AATGTTGACTAGGGCGAAACCATCACT-TCAACGGAAG
1 GACCAAGATGAAACCTAAGTCGAAAAGAA-GTTGACCA-AGCGAAACCATCA-TGTCAACAAAAG
*
49746 GC
63 AC
** * * * * *
49748 -AGCC-AGGCGAAACCTAAGTC-AAAAGAAGTTGACCAAGGTGAAACCATTATGTTAATAAAAGG
1 GA-CCAAGATGAAACCTAAGTCGAAAAGAAGTTGACCAA-GCGAAACCATCATGTCAACAAAAGA
*
49810 T
64 C
* * * * * * *
49811 GAACAGGGTGAAATCC-AAGTCAAAAAGAAGTTAACCAAGGCGAAACCATCACGTAAACAAAAGA
1 GACCAAGATGAAA-CCTAAGTCGAAAAGAAGTTGACCAA-GCGAAACCATCATGTCAACAAAAGA
*
49875 T
64 C
* * ** * * * * * * * ** *
49876 GACTAGGGCGAAACCTAAATTGAAAAGAAGTTGACTATGATGAAACCATCACGTTAATGAAAGGC
1 GACCAAGATGAAACCTAAGTCGAAAAGAAGTTGACCAAG-CGAAACCATCATGTCAACAAAAGAC
* * * * ***
49941 AACTAAGACGAAACCTAAGTTGAAAAGAAGTTGACCAAAATAAACCATCATGTCAACAAAAGAC
1 GACCAAGATGAAACCTAAGTCGAAAAGAAGTTGACCAAGCGAAACCATCATGTCAACAAAAGAC
** * * * **
50005 GACCAAGATGAAATGTAAGTCGAAAAAAAGTTGACCAAGGCGAAACGATAATGTCAATGAAAGAC
1 GACCAAGATGAAACCTAAGTCGAAAAGAAGTTGACCAA-GCGAAACCATCATGTCAACAAAAGAC
** * * * * **
50070 GACCAAGGCG-AACCTAAGTC-AAATAGACGTTGGCCAGGGCGAAACCATCATGTCAATAATGGA
1 GACCAAGATGAAACCTAAGTCGAAA-AGAAGTTGACCA-AGCGAAACCATCATGTCAACAAAAGA
*
50133 T
64 C
* * *
50134 GACCAAGGA-GAAACCTAAGTCAAAAAGAAGTTGACCAAG-GTAGAACCATCATGTCAACCAAAT
1 GACCAA-GATGAAACCTAAGTCGAAAAGAAGTTGACCAAGCG-A-AACCATCATGTCAACAAAAG
*
50197 AT
63 AC
* * * *
50199 GACCATGGTGAAACTTAAGTCGAAAAGAAGTTAACCA
1 GACCAAGATGAAACCTAAGTCGAAAAGAAGTTGACCA
50236 GGGTGACACC
Statistics
Matches: 431, Mismatches: 100, Indels: 44
0.75 0.17 0.08
Matches are distributed among these distances:
62 1 0.00
63 33 0.08
64 131 0.30
65 260 0.60
66 6 0.01
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.17
Consensus pattern (64 bp):
GACCAAGATGAAACCTAAGTCGAAAAGAAGTTGACCAAGCGAAACCATCATGTCAACAAAAGAC
Found at i:50147 original size:33 final size:34
Alignment explanation
Indices: 50110--50190 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 34
50100 TGGCCAGGGC
*
50110 GAAACCATCATGTCAATAATG-GATGACCAAGG-A
1 GAAACCATCATGTCAA-AAAGAGATGACCAAGGTA
* *
50143 GAAACC-T-AAGTCAAAAAGAAGTTGACCAAGGTA
1 GAAACCATCATGTCAAAAAG-AGATGACCAAGGTA
50176 G-AACCATCATGTCAA
1 GAAACCATCATGTCAA
50191 CCAAATATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
30 3 0.08
31 6 0.15
32 15 0.38
33 9 0.23
34 6 0.15
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (34 bp):
GAAACCATCATGTCAAAAAGAGATGACCAAGGTA
Found at i:52054 original size:76 final size:76
Alignment explanation
Indices: 51954--52096 Score: 187
Period size: 76 Copynumber: 1.9 Consensus size: 76
51944 AATAAAAAGG
* * * * * * *
51954 CAAATGGATATAAAATTATGCAAATGCAAATGTTATCTAAAGTGTGGATGTGTATGAAATGATGC
1 CAAATGCATATAAAATGATGCAAATACAAATGTCATATAAAGCGTGGATATGTATGAAATGATGC
52019 AAATGTACAAA
66 AAATGTACAAA
* * * *
52030 CAAATGCATATGAAATGATGCAAATACCAGTGTCATATAAAGCGTGGATATGTGTGAAATGATGC
1 CAAATGCATATAAAATGATGCAAATACAAATGTCATATAAAGCGTGGATATGTATGAAATGATGC
52095 AA
66 AA
52097 GCATCCATAA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 56 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (76 bp):
CAAATGCATATAAAATGATGCAAATACAAATGTCATATAAAGCGTGGATATGTATGAAATGATGC
AAATGTACAAA
Found at i:55291 original size:20 final size:19
Alignment explanation
Indices: 55208--55291 Score: 65
Period size: 20 Copynumber: 4.7 Consensus size: 19
55198 GTTCATATTA
*
55208 TTTA-ATTAAATT-TATAT
1 TTTATATTAAATTATTTAT
55225 TTT-TATTAAA-TATTTA-
1 TTTATATTAAATTATTTAT
* *
55241 -TTATATT-TATTACTTAT
1 TTTATATTAAATTATTTAT
*
55258 TTAATATTAGAATTATTTAT
1 TTTATATTA-AATTATTTAT
55278 TTTATATTTAAATT
1 TTTATA-TTAAATT
55292 TTTTTAACAA
Statistics
Matches: 51, Mismatches: 7, Indels: 15
0.70 0.10 0.21
Matches are distributed among these distances:
15 3 0.06
16 10 0.20
17 12 0.24
18 6 0.12
20 17 0.33
21 3 0.06
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (19 bp):
TTTATATTAAATTATTTAT
Found at i:59186 original size:74 final size:74
Alignment explanation
Indices: 59103--59250 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
59093 AAGTCTAAAG
59103 TGTGATGATGAAGGGAATACAATACTAAAGATATAATAATTTATTCTTTTTGACTTAGTATTCAC
1 TGTGATGATGAAGGGAATACAATACTAAAGATATAATAATTTATTCTTTTTGACTTAGTATTCAC
59168 ATTGGATTC
66 ATTGGATTC
59177 TGTGATGATGAAGGGAATACAATACTAAAGATATAATAATTTATTCTTTTTGACTTAGTATTCAC
1 TGTGATGATGAAGGGAATACAATACTAAAGATATAATAATTTATTCTTTTTGACTTAGTATTCAC
59242 ATTGGATTC
66 ATTGGATTC
59251 CAATTTGTGT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.39
Consensus pattern (74 bp):
TGTGATGATGAAGGGAATACAATACTAAAGATATAATAATTTATTCTTTTTGACTTAGTATTCAC
ATTGGATTC
Found at i:59468 original size:20 final size:20
Alignment explanation
Indices: 59439--59513 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
59429 AAAAAGACAT
59439 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAG
* *
59459 AATATATCGATACA-TGTATG
1 AATGTATCGATACATTG-AAG
* * *
59479 AATGTATCGATATATTAAAA
1 AATGTATCGATACATTGAAG
*
59499 AATGTATTGATACAT
1 AATGTATCGATACAT
59514 CTAGGTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 2 0.05
20 41 0.93
21 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAG
Found at i:60001 original size:45 final size:47
Alignment explanation
Indices: 59891--60066 Score: 205
Period size: 47 Copynumber: 3.8 Consensus size: 47
59881 AGAGGAGTGC
** * * *
59891 CAATGTGCCAATTCAATGCCAGCGACATTGGGCTAAGGGAAATGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAA-GTGGA
* *
59939 CTAATGTGCTGA-TCAAGGCCAACGACATTGGGCT-A-GTAAAGTGGA
1 C-AATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAGTGGA
* *
59984 CAATGTGCTGATTCAAGGCCAACAACATTGAGCTAAGGGAAAATGGA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAGTGGA
* * *
60031 AAATGTGTTGATTCAAGGCCAGCGACATTGAGCTAA
1 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA
60067 TAAAGGTGCC
Statistics
Matches: 111, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
44 10 0.09
45 26 0.23
46 5 0.05
47 41 0.37
48 21 0.19
49 8 0.07
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.22
Consensus pattern (47 bp):
CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAGTGGA
Found at i:60085 original size:92 final size:92
Alignment explanation
Indices: 59886--60096 Score: 255
Period size: 92 Copynumber: 2.3 Consensus size: 92
59876 AGATAAGAGG
** * * * * *
59886 AGTGCCAATGTGCCAATTCAATGCCAGCGACATTGGGCTAAGGGAAATGTGGACTAATGTGCTGA
1 AGTGCCAATGTGCTGATTCAATGCCAACAACATTGAGCTAAGGGAAATATGGACAAATGTGCTGA
* *
59951 TCAAGGCCAACGACATTGGGCTAGTAA
66 TCAAGGCCAACGACATTGAGCTAATAA
* * *
59978 AGTGGACAATGTGCTGATTCAAGGCCAACAACATTGAGCTAAGGGAAA-ATGGA-AAATGTGTTG
1 AGT-GCCAATGTGCTGATTCAATGCCAACAACATTGAGCTAAGGGAAATATGGACAAATGTGCTG
*
60041 ATTCAAGGCCAGCGACATTGAGCTAATAA
65 A-TCAAGGCCAACGACATTGAGCTAATAA
*
60070 AGGTGCCAATATGCTGATTCAATGCCA
1 A-GTGCCAATGTGCTGATTCAATGCCA
60097 GCGATATCGG
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
91 9 0.09
92 52 0.52
93 39 0.39
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (92 bp):
AGTGCCAATGTGCTGATTCAATGCCAACAACATTGAGCTAAGGGAAATATGGACAAATGTGCTGA
TCAAGGCCAACGACATTGAGCTAATAA
Found at i:60098 original size:45 final size:46
Alignment explanation
Indices: 59889--60100 Score: 189
Period size: 45 Copynumber: 4.6 Consensus size: 46
59879 TAAGAGGAGT
** * *
59889 GCCAATGTGCCAATTCAATGCCAGCGACATTGGGCTAAGGGAAATGTG
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-GGAAA-GTG
* * * *
59937 GACTAATGTGCTGA-TCAAGGCCAACGACATTGGGCT-AGTAAAGTG
1 G-CCAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAGTG
* * * *
59982 GACAATGTGCTGATTCAAGGCCAACAACATTGAGCTAAGGGAAAATG
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-GGAAAGTG
** * *
60029 GAAAATGTGTTGATTCAAGGCCAGCGACATTGAGCTAA-TAAAG-G
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAGTG
* *
60073 TGCCAATATGCTGATTCAATGCCAGCGA
1 -GCCAATGTGCTGATTCAAGGCCAGCGA
60101 TATCGGATTT
Statistics
Matches: 136, Mismatches: 23, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
44 11 0.08
45 49 0.36
46 5 0.04
47 41 0.30
48 21 0.15
49 9 0.07
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (46 bp):
GCCAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAGTG
Found at i:60333 original size:84 final size:84
Alignment explanation
Indices: 60173--61621 Score: 531
Period size: 96 Copynumber: 16.3 Consensus size: 84
60163 CTTTTAAAAA
* * * * *
60173 AAAGG-TGCCACTAACTTCTGTGGGCTTTCAAGAGATGCCACTGACTTGTGGGTTTTGAAAGGAT
1 AAAGGATGCCACTGAC-TC-GTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGAT
*
60237 GCCACTGACTTGTGGGCTTTG
64 ACCACTGACTTGTGGGCTTTG
* * * * *
60258 GAAGGATGCCACTGACTCGTGGGCTTTGAAAAGTTGTCACTAACTTGTGGGCTTGGAAAAGATAC
1 AAAGGATGCCACTGACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATAC
* * *
60323 CATTGACTTGTTGGTTTTG
66 CACTGACTTGTGGGCTTTG
* * * * *
60342 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAAGGATGC
1 AAAGGATGCCACTGACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATAC
* *
60407 TACTGACTCGTGGGCTTTG
66 CACTGACTTGTGGGCTTTG
* * * * *
60426 AAA--A----ATTG-C-CATGGGCTTGGAAAGGATGCCACTGACTTGTGGGC-TTGAAAAGGGTA
1 AAAGGATGCCACTGACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAA-GATA
*
60482 CCACTAACTTGTGGGCTTTG
65 CCACTGACTTGTGGGCTTTG
* * * * * * *
60502 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAAGCCACCGACTTGTGAGCTTTGAAATGGGTT
1 AAAGGATGCCACTGACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAA--AGAT
* *
60567 GCCACCGACTTGTGTGGGCTTTG
64 ACCACTGAC-T-TGTGGGCTTTG
* * ** * * * *
60590 AAAGGATGCCACAGATTTATGGGCTTTGAAAGGATACTACTGACTTGTGGGCTTTGAAAAGATGC
1 AAAGGATGCCACTGACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATAC
*
60655 CACCGACTTGTGTGGGCTTTG
66 CACTGAC-T-TGTGGGCTTTG
* * * * * *
60676 AAATGGGTTGCCAC-CACCTTGTGTGGGCTTTGAAATTAGTTCCCACTGACTTGTATGGGCTTTC
1 AAA--GGATGCCACTGA-C-T-CGTGGGCTTTGAAA--AGATGCCACTGACTTG--TGGGCTTTG
* * **
60740 AAATAGGTTGCCACCAACTTGTGTGGGCTTTG
57 AAA-A-GATACCACTGAC-T-TGTGGGCTTTG
* ** * * **
60772 AAATAGGTTGCCACCAACTTGTGTGAGCTTTGAAATGACTTGCCACCAACTTGTGTAGGCTTT-A
1 -AA-AGGATGCCACTGACTCGTG-G-GCTTTGAAAAGA--TGCCACTGACTTGTG--GGCTTTGA
* * **
60836 AAATGGGTTGCCACCAACTTGTCTGGGCTTTG
58 AAA---GATACCACTGACTTG--TGGGCTTTG
* * ** * * * ** *
60868 AAATAAGTTGCCACCAACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCA
1 -AA-AGGATGCCACTGAC-T-CGTGGGCTTTGAAA--AGATGCCACTGAC-T-TGTGGGCTTTGA
* * **
60933 AATGAGTTGCCACCAACTTGTGTGGGCTTTG
58 AA--AGATACCACTGAC-T-TGTGGGCTTTG
* * ** * * **
60964 AAGTAAGTTGCCACCAACTTGTGTGGGCTTTGAAGTAAGTTGCCACCAACTTGTGTGGGCTTTGA
1 AA--AGGATGCCACTGAC-T-CGTGGGCTTTGAA--AAGATGCCACTGAC-T-TGTGGGCTTTGA
** * * ** * *
61029 AGTGGGTTGCCACCAACTTGCGTTGGCTTTC
58 A--AAGATACCACTGACTT--GTGGGCTTTG
** ** * * **
61060 AAATAATTTGCCACCAACTTGTGTAGGCTTT-AAAATGGGTTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGA--TGCCACTGACTCGTG--GGCTTTGAAAA---GATGCCACTGAC-T-TGTGGGCTTTG
* * **
61124 AAATATGTTGCCACCAACTTGTGTGGGCTTTG
57 AAA-A-GATACCACTGAC-T-TGTGGGCTTTG
* ** * * * **
61156 AAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCACCAACTTATGTGGGCTTTGA
1 AAA--GGATGCCACTGAC-T-CGTGGGCTTTGAAA--AGATGCCACTGAC-T-TGTGGGCTTTGA
* * **
61221 AATAGGTTGCCACCAACTTGTGTGGGCTTTG
58 AA-A-GATACCACTGAC-T-TGTGGGCTTTG
* * * * *
61252 AAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG-AAAG
1 AAA-G-GATGCCACTGAC-T-CGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAG
*
61316 AGTGCCACTGACTTGTGGGC-TTG
62 A-TACCACTGACTTGTGGGCTTTG
* *
61339 AAAAGG-TGCCACTGACTTGTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTG-AAAGA
1 -AAAGGATGCCACTGAC-T-CGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
61402 GTGCCACTGACTCGTGGGCTTTA
63 -TACCACTGACTTGTGGGCTTTG
* * * * * * * *
61425 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAAGCCACCGACTTGTGAGCATTGAAATGGGTT
1 AAAGGATGCCACTGACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAA--AGAT
*
61490 GCCACTGACTTGTGTGGGCTTTG
64 ACCACTGAC-T-TGTGGGCTTTG
* * * * *
61513 AAAGGATGCCATTGACTTGTGTTGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
1 AAAGGATGCCACTGACTCGTG--GGCTTTGAAAAGA-TGCCACTGACTTGTGGGCTTTGAAAAGA
* *
61578 TGCCACTGACTTGTGGACTTTG
63 TACCACTGACTTGTGGGCTTTG
*
61600 -AAGGAGTGCCACTGACTTGTGG
1 AAAGGA-TGCCACTGACTCGTGG
61622 ACTTAAAAAG
Statistics
Matches: 1137, Mismatches: 138, Indels: 178
0.78 0.09 0.12
Matches are distributed among these distances:
75 6 0.01
76 52 0.05
77 1 0.00
78 3 0.00
82 3 0.00
83 1 0.00
84 188 0.17
85 94 0.08
86 73 0.06
87 32 0.03
88 107 0.09
89 15 0.01
90 34 0.03
91 23 0.02
92 23 0.02
93 3 0.00
94 37 0.03
95 14 0.01
96 393 0.35
97 15 0.01
98 18 0.02
99 2 0.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (84 bp):
AAAGGATGCCACTGACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATAC
CACTGACTTGTGGGCTTTG
Found at i:60496 original size:76 final size:76
Alignment explanation
Indices: 60361--60504 Score: 200
Period size: 76 Copynumber: 1.9 Consensus size: 76
60351 CACTGACTTG
* * * *
60361 TGGGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAAGGATGCTACTGACTCGTGGGCTTTG
1 TGGGCTTGGAAAAGATGCCACCGACTTGTGGGCTTTGAAAGGATACCACTAACTCGTGGGCTTTG
60426 AAAAATTGCCA
66 AAAAATTGCCA
* * * *
60437 TGGGCTTGGAAAGGATGCCACTGACTTGTGGGC-TTGAAAAGGGTACCACTAACTTGTGGGCTTT
1 TGGGCTTGGAAAAGATGCCACCGACTTGTGGGCTTTG-AAAGGATACCACTAACTCGTGGGCTTT
60501 GAAA
65 GAAA
60505 GGGTGCCACT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
75 3 0.05
76 56 0.95
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (76 bp):
TGGGCTTGGAAAAGATGCCACCGACTTGTGGGCTTTGAAAGGATACCACTAACTCGTGGGCTTTG
AAAAATTGCCA
Found at i:60697 original size:32 final size:32
Alignment explanation
Indices: 60463--61592 Score: 945
Period size: 32 Copynumber: 37.1 Consensus size: 32
60453 GCCACTGACT
* * *
60463 TGTGGGC-TTGAAAAGGG-TACCACTAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
**
60491 TGTGGGCTTTGAAA-GGG-TGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* ** *
60519 TGTGGGCTTTGAAA--AGAAGCCACCGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
60547 TGTGAGCTTTGAAATGGGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
*
60579 TGTGGGCTTTGAAA--GGATGCCA-CAGA-TT-
1 TGTGGGCTTTGAAATGGGTTGCCACCA-ACTTG
* * * * **
60607 TATGGGCTTTGAAA--GGATACTACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * *
60635 TGTGGGCTTTGAAA--AGATGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
*
60665 TGTGGGCTTTGAAATGGGTTGCCACCACCTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
** * **
60697 TGTGGGCTTTGAAATTAGTTCCCACTGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * *
60729 TATGGGCTTTCAAATAGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
*
60761 TGTGGGCTTTGAAATAGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
60793 TGTGAGCTTTGAAATGACTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
60825 TGTAGGCTTTAAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
60857 TCTGGGCTTTGAAATAAGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
60889 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
60921 TGTGGGCTTTCAAATGAGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
60953 TGTGGGCTTTGAAGTAAGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
60985 TGTGGGCTTTGAAGTAAGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
*
61017 TGTGGGCTTTGAAGTGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * * ***
61049 CGTTGGCTTTCAAATAATTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
61081 TGTAGGCTTTAAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
**
61113 TGTGGGCTTTGAAATATGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
61145 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * *
61177 TGTGGGCTTTCAAATGAGTTGCCACCAACTTA
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
*
61209 TGTGGGCTTTGAAATAGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
61241 TGTGGGCTTTGAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
61273 TGTGGGCTTTGAAA--GGATGCCACTAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
61301 TGTGGGCTTTGAAA-GAG-TGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
61329 TGTGGGC-TTGAAA-AGG-TGCCACTGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * *
61358 TGTGGGCTTTGAAA--AGATGCCACTAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
61386 TGTGGGCTTTGAAA-GAG-TGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * **
61414 CGTGGGCTTT-AAAAGGG-TGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* ** *
61442 TGTGGGCTTTGAAA--AGAAGCCACCGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * **
61470 TGTGAGCATTGAAATGGGTTGCCACTGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* ***
61502 TGTGGGCTTTGAAA--GGATGCCATTGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* **
61532 TGTTGGCTTTGAAA-GGAG-TGCCACTGAC-T-
1 TGTGGGCTTTGAAATGG-GTTGCCACCAACTTG
**
61561 TGTGGGCTTTGAAA-GGG-TGCCACTGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
61591 TG
1 TG
61593 GACTTTGAAG
Statistics
Matches: 948, Mismatches: 124, Indels: 58
0.84 0.11 0.05
Matches are distributed among these distances:
27 22 0.02
28 217 0.23
29 42 0.04
30 95 0.10
31 12 0.01
32 560 0.59
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (32 bp):
TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
Found at i:61347 original size:27 final size:28
Alignment explanation
Indices: 60437--61877 Score: 605
Period size: 32 Copynumber: 48.5 Consensus size: 28
60427 AAAATTGCCA
*
60437 TGGGC-TTGGAAAGGATGCCACTGACTTG
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
* *
60465 TGGGC-TTGAAAAGGGTACCACTAACTTG
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
*
60493 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
** *
60521 TGGGCTTTGAAAAGAAGCCACCGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * *
60549 TGAGCTTTGAAATGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA-AGG-TGCCACTGAC-T-TG
* * *
60581 TGGGCTTTG-AAAGGATGCCACAGATTTA
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
* *
60609 TGGGCTTTG-AAAGGATACTACTGACTTG
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
* *
60637 TGGGCTTTGAAAAGATGCCACCGACTTGTG
1 TGGGCTTTGAAAAGGTGCCACTGAC-T-TG
* *
60667 TGGGCTTTGAAATGGGTTGCCAC-CACCTTGTG
1 TGGGCTTTGAAA-AGG-TGCCACTGA-C-T-TG
* *
60699 TGGGCTTTGAAATTAGTTCCCACTGACTTG
1 TGGGCTTTGAAA--AGGTGCCACTGACTTG
* **
60729 TATGGGCTTTCAAATAGGTTGCCACCAACTTGTG
1 --TGGGCTTTGAAA-AGG-TGCCACTGAC-T-TG
**
60763 TGGGCTTTGAAATAGGTTGCCACCAACTTG
1 TGGGCTTTGAAA-AGG-TGCCACTGACTTG
** **
60793 TGTGAGCTTTGAAATGACTTGCCACCAACTTG
1 TG-G-GCTTTGAAA--AGGTGCCACTGACTTG
**
60825 TGTAGGCTTT-AAAATGGGTTGCCACCAACTTG
1 TG--GGCTTTGAAAA--GG-TGCCACTGACTTG
* **
60857 TCTGGGCTTTGAAATAAGTTGCCACCAACTTGTG
1 --TGGGCTTTG-AA-AAGGTGCCACTGAC-T-TG
* **
60891 TGGGCTTTGAAATGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA-AGG-TGCCACTGAC-T-TG
* * **
60923 TGGGCTTTCAAATGAGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA--AGGTGCCACTGAC-T-TG
* **
60955 TGGGCTTTGAAGTAAGTTGCCACCAACTTGTG
1 TGGGCTTTGAA--AAGGTGCCACTGAC-T-TG
* **
60987 TGGGCTTTGAAGTAAGTTGCCACCAACTTGTG
1 TGGGCTTTGAA--AAGGTGCCACTGAC-T-TG
** **
61019 TGGGCTTTGAAGTGGGTTGCCACCAACTTGCG
1 TGGGCTTTGAA-AAGG-TGCCACTGACTT--G
* * ** **
61051 TTGGCTTTCAAATAATTTGCCACCAACTTG
1 TGGGCTTT-GAA-AAGGTGCCACTGACTTG
**
61081 TGTAGGCTTT-AAAATGGGTTGCCACCAACTTGTG
1 TG--GGCTTTGAAAA--GG-TGCCACTGAC-T-TG
* **
61115 TGGGCTTTGAAATATGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA-A-GGTGCCACTGAC-T-TG
* **
61147 TGGGCTTTGAAATGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA-AGG-TGCCACTGAC-T-TG
* * **
61179 TGGGCTTTCAAATGAGTTGCCACCAACTTATG
1 TGGGCTTTGAAA--AGGTGCCACTGAC-T-TG
**
61211 TGGGCTTTGAAATAGGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA-AGG-TGCCACTGAC-T-TG
* *
61243 TGGGCTTTGAAATGAGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA--AGGTGCCACTGAC-T-TG
*
61275 TGGGCTTTG-AAAGGATGCCACTAACTTG
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
61303 TGGGCTTTG-AAAGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAG-GTGCCACTGACTTG
61331 TGGGC-TTGAAAAGGTGCCACTGACTTGTG
1 TGGGCTTTGAAAAGGTGCCACTGAC-T-TG
* *
61360 TGGGCTTTGAAAAGATGCCACTAACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
*
61388 TGGGCTTTG-AAAGAGTGCCACTGACTCG
1 TGGGCTTTGAAAAG-GTGCCACTGACTTG
61416 TGGGCTTT-AAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
** *
61444 TGGGCTTTGAAAAGAAGCCACCGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * *
61472 TGAGCATTGAAATGGGTTGCCACTGACTTGTG
1 TGGGCTTTGAAA-AGG-TGCCACTGAC-T-TG
*
61504 TGGGCTTTG-AAAGGATGCCATTGACTTG
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
*
61532 TGTTGGCTTTGAAAGGAGTGCCACTGACTTG
1 TG--GGCTTTGAAAAG-GTGCCACTGACTTG
*
61563 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
61591 TGGACTTTG-AAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAG-GTGCCACTGACTTG
* * * * *
61619 TGGAC-TTAAAAAGGTGCTACAGAGTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * * * *
61646 TAGAC-TTAAAAAGGTGCCACGGAGTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * *
61673 TGGAC-TT-AAAAGGGTGCCACGGAGTTG
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
* * *
61700 TGGACTTT-AAAAGGTGCCACAGAGTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * *
61727 TGGACTTT-AAAAGGGTGCCACGGAGTTG
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
* * *
61755 TGGACTTT-AAAAGGGTGCCACGGAGTTG
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
* * *
61783 TGGAC-TT-AAAAGGATGCCACGGAGTTG
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
* *
61810 TGGACTTT-AAAAGGATGCCA-TAGAGTTG
1 TGGGCTTTGAAAAGG-TGCCACT-GACTTG
* * *
61838 TGGAC-TT-AAAAGGATGCCACGGAGTTG
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
* *
61865 TGGACTTTAAAAA
1 TGGGCTTTGAAAA
61878 AAAATGCCAC
Statistics
Matches: 1203, Mismatches: 126, Indels: 167
0.80 0.08 0.11
Matches are distributed among these distances:
26 6 0.00
27 160 0.13
28 356 0.30
29 53 0.04
30 96 0.08
31 44 0.04
32 453 0.38
33 19 0.02
34 14 0.01
35 2 0.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
TGGGCTTTGAAAAGGTGCCACTGACTTG
Found at i:61622 original size:28 final size:28
Alignment explanation
Indices: 61241--61872 Score: 332
Period size: 28 Copynumber: 22.4 Consensus size: 28
61231 CACCAACTTG
* * *
61241 TGTGGGCTTTGAAATGAGTTGCCACCGACTT
1 TGTGGACTTTG-AAGGAG-TGCCACTGAC-T
* *
61272 GTGTGGGCTTTGAAAGGA-TGCCACTAACT
1 -TGTGGACTTTG-AAGGAGTGCCACTGACT
* *
61301 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
* *
61329 TGTGGGC-TTGAA-AAGGTGCCACTGACTT
1 TGTGGACTTTGAAGGA-GTGCCACTGAC-T
* * *
61357 GTGTGGGCTTTGAA-AAGATGCCACTAACT
1 -TGTGGACTTTGAAGGAG-TGCCACTGACT
* *
61386 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
* * *
61414 CGTGGGCTTTAAAAGG-GTGCCACTGACT
1 TGTGGACTTT-GAAGGAGTGCCACTGACT
* * * *
61442 TGTGGGCTTTGAA-AAGAAGCCACCGACT
1 TGTGGACTTTGAAGGAG-TGCCACTGACT
*
61470 TGT-GAGCATTGAAATGG-GTTGCCACTGACTT
1 TGTGGA-CTTTG-AA-GGAG-TGCCACTGAC-T
* *
61501 GTGTGGGCTTTGAAAGGA-TGCCATTGACT
1 -TGTGGACTTTG-AAGGAGTGCCACTGACT
*
61530 TGTGTTGGCTTTGAAAGGAGTGCCACTGACT
1 TGTG--GACTTTG-AAGGAGTGCCACTGACT
*
61561 TGTGGGCTTTGAAAGG-GTGCCACTGACT
1 TGTGGACTTTG-AAGGAGTGCCACTGACT
61589 TGTGGACTTTGAAGGAGTGCCACTGACT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
** * * * *
61617 TGTGGACTTAAAAAG-GTGCTACAGAGT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
* ** * * *
61644 TGTAGACTTAAAAAG-GTGCCACGGAGT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
** * *
61671 TGTGGACTTAAAAGG-GTGCCACGGAGT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
* * * *
61698 TGTGGACTTTAAAAG-GTGCCACAGAGT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
* * *
61725 TGTGGACTTTAAAAGG-GTGCCACGGAGT
1 TGTGGACTTT-GAAGGAGTGCCACTGACT
* * *
61753 TGTGGACTTTAAAAGG-GTGCCACGGAGT
1 TGTGGACTTT-GAAGGAGTGCCACTGACT
** * *
61781 TGTGGACTTAAAAGGA-TGCCACGGAGT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
* *
61808 TGTGGACTTTAAAAGGA-TGCCA-TAGAGT
1 TGTGGACTTT-GAAGGAGTGCCACT-GACT
** * *
61836 TGTGGACTTAAAAGGA-TGCCACGGAGT
1 TGTGGACTTTGAAGGAGTGCCACTGACT
61863 TGTGGACTTT
1 TGTGGACTTT
61873 AAAAAAAAAT
Statistics
Matches: 523, Mismatches: 50, Indels: 59
0.83 0.08 0.09
Matches are distributed among these distances:
26 1 0.00
27 169 0.32
28 224 0.43
29 30 0.06
30 55 0.11
31 17 0.03
32 26 0.05
33 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (28 bp):
TGTGGACTTTGAAGGAGTGCCACTGACT
Found at i:61873 original size:55 final size:54
Alignment explanation
Indices: 61549--61876 Score: 431
Period size: 55 Copynumber: 6.0 Consensus size: 54
61539 TTTGAAAGGA
* * * * * * * *
61549 GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGACTTTGAAGG
1 GTGCCACAGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAG
* * * * * * *
61604 AGTGCCACTGACTTGTGGACTTAAAAAGGTGCTACAGAGTTGTAGACTTAAAAAG
1 -GTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAG
*
61659 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAG
1 GTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAG
61713 GTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGG
1 GTGCCACAGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA-G
* *
61769 GTGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAG
1 GTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAG
* *
61823 GATGCCATAGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAA
1 G-TGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
61877 AAAAATGCCA
Statistics
Matches: 247, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
54 67 0.27
55 143 0.58
56 37 0.15
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (54 bp):
GTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAG
Found at i:63217 original size:24 final size:24
Alignment explanation
Indices: 63191--63235 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
63181 TTTTGCACTT
*
63191 TTTTTCTTTTCA-TTTTTTTGTGC
1 TTTTGCTTTTCACTTTTTTTGTGC
*
63214 TTTTGCTTTTGACTTTTTTTGT
1 TTTTGCTTTTCACTTTTTTTGT
63236 CATTTTGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.04, C:0.11, G:0.11, T:0.73
Consensus pattern (24 bp):
TTTTGCTTTTCACTTTTTTTGTGC
Found at i:70291 original size:20 final size:20
Alignment explanation
Indices: 70262--70336 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
70252 AAAAAGACAT
70262 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAG
* *
70282 AATATATCGATACA-TGTATG
1 AATGTATCGATACATTG-AAG
* * *
70302 AATGTATCGATATATTAAAA
1 AATGTATCGATACATTGAAG
*
70322 AATGTATTGATACAT
1 AATGTATCGATACAT
70337 CTAGGTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 2 0.05
20 41 0.93
21 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAG
Found at i:71507 original size:32 final size:30
Alignment explanation
Indices: 71471--71529 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
71461 GAAAACAAAT
71471 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
71503 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
71530 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:71828 original size:13 final size:13
Alignment explanation
Indices: 71810--71835 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71800 CAATTTTTTG
71810 TGTATCGATACAT
1 TGTATCGATACAT
71823 TGTATCGATACAT
1 TGTATCGATACAT
71836 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:71850 original size:32 final size:33
Alignment explanation
Indices: 71790--71853 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
71780 TACAAGCCGA
** *
71790 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
71823 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
71854 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:71931 original size:20 final size:20
Alignment explanation
Indices: 71884--71957 Score: 71
Period size: 20 Copynumber: 3.6 Consensus size: 20
71874 TTCCCAATGA
**
71884 TATGTATCGATACATCT-TTT
1 TATGTATCGATACAT-TGAAT
71904 TCATGTATCGATACATTGCAA-
1 T-ATGTATCGATACATTG-AAT
*
71925 TATGTATCGATACTTTGAAT
1 TATGTATCGATACATTGAAT
*
71945 TGTGTATCGATAC
1 TATGTATCGATAC
71958 TTTTAAGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.04
20 29 0.63
21 15 0.33
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (20 bp):
TATGTATCGATACATTGAAT
Found at i:71958 original size:20 final size:20
Alignment explanation
Indices: 71906--71960 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
71896 CATCTTTTTC
*
71906 ATGTATCGATACATTGCAAT
1 ATGTATCGATACTTTGCAAT
71926 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACTTTGCAA-T
*
71946 GTGTATCGATACTTT
1 ATGTATCGATACTTT
71961 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAT
Found at i:77816 original size:20 final size:20
Alignment explanation
Indices: 77791--77862 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
77781 TACCCAGATG
77791 TATCGATACATTTTTCAATA
1 TATCGATACATTTTTCAATA
* * *
77811 TATCGATACATGTATGAATA
1 TATCGATACATTTTTCAATA
* * * *
77831 TATCGATATATTCTGCAATG
1 TATCGATACATTTTTCAATA
77851 TATCGATACATT
1 TATCGATACATT
77863 ATGTCTTTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTTTCAATA
Found at i:78800 original size:23 final size:23
Alignment explanation
Indices: 78770--78826 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
78760 AGCCTTTGAC
78770 CATGCATTTTTTTTACTACGTTT
1 CATGCATTTTTTTTACTACGTTT
78793 CATGCATTTTTTTTACTACGTTT
1 CATGCATTTTTTTTACTACGTTT
78816 CATGCATTTTT
1 CATGCATTTTT
78827 AACATGTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.56
Consensus pattern (23 bp):
CATGCATTTTTTTTACTACGTTT
Found at i:80944 original size:36 final size:36
Alignment explanation
Indices: 80903--80992 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
80893 AAGCAACATG
**
80903 AAGAATAAATTGGCAACAGCTGCTGGCAACAAAGAA
1 AAGAATAAATCAGCAACAGCTGCTGGCAACAAAGAA
* *
80939 AAGAATAAATCAGCAACAGCTGCTGGCAACAAGGAG
1 AAGAATAAATCAGCAACAGCTGCTGGCAACAAAGAA
*
80975 AAGAACAAATCAGCAACA
1 AAGAATAAATCAGCAACA
80993 ACGGGATGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.49, C:0.19, G:0.21, T:0.11
Consensus pattern (36 bp):
AAGAATAAATCAGCAACAGCTGCTGGCAACAAAGAA
Found at i:81915 original size:32 final size:33
Alignment explanation
Indices: 81855--81919 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
81845 CACACCCAGA
* *
81855 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCAATACATGCTGCATTGTATCGATACAT
*
81888 TGTATCAATACATG-TTCATTGTATCGATACAT
1 TGTATCAATACATGCTGCATTGTATCGATACAT
81920 GGACAAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCAATACATGCTGCATTGTATCGATACAT
Found at i:82002 original size:13 final size:14
Alignment explanation
Indices: 81984--82015 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
81974 ATCGATACAT
81984 GATACAATT-TATC
1 GATACAATTGTATC
81997 GATAC-ATTGTATC
1 GATACAATTGTATC
82010 GATACA
1 GATACA
82016 TGAAGCAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.18
13 14 0.82
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (14 bp):
GATACAATTGTATC
Found at i:82012 original size:33 final size:33
Alignment explanation
Indices: 81970--82036 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
81960 CTATCACTAT
*
81970 TTGTATCGATACATGATA-CAATTTATCGATACA
1 TTGTATCGATACATGA-AGCAATGTATCGATACA
82003 TTGTATCGATACATGAAGCAATGTATCGATACA
1 TTGTATCGATACATGAAGCAATGTATCGATACA
82036 T
1 T
82037 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATGAAGCAATGTATCGATACA
Found at i:90625 original size:20 final size:19
Alignment explanation
Indices: 90602--90675 Score: 85
Period size: 19 Copynumber: 3.7 Consensus size: 19
90592 CATACCCAGA
*
90602 TGTATCGATACATGCTGCTT
1 TGTATCGATACATG-TGCAT
*
90622 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTGCAT
**
90641 TGTATCGATACATGGATAAAT
1 TGTATCGATACAT-G-TGCAT
90662 TGTATCGATACATG
1 TGTATCGATACATG
90676 AAACTGGCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 16 0.33
20 16 0.33
21 16 0.33
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTGCAT
Found at i:90665 original size:21 final size:20
Alignment explanation
Indices: 90602--90675 Score: 78
Period size: 21 Copynumber: 3.7 Consensus size: 20
90592 CATACCCAGA
* ***
90602 TGTATCGATACATGCTGCTT
1 TGTATCGATACATGGTAAAT
**
90622 TGTATCGATACAT-GTTCAT
1 TGTATCGATACATGGTAAAT
90641 TGTATCGATACATGGATAAAT
1 TGTATCGATACATGG-TAAAT
90662 TGTATCGATACATG
1 TGTATCGATACATG
90676 AAACTGGCAG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
19 16 0.34
20 14 0.30
21 17 0.36
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATGGTAAAT
Found at i:90741 original size:13 final size:13
Alignment explanation
Indices: 90720--90750 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
90710 CGATACATGG
*
90720 TACAATGTATCGA
1 TACATTGTATCGA
90733 TACATTGTATCGA
1 TACATTGTATCGA
90746 TACAT
1 TACAT
90751 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:90746 original size:33 final size:32
Alignment explanation
Indices: 90704--90770 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 32
90694 CTATCACTAT
90704 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
90737 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
90770 T
1 T
90771 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:93130 original size:316 final size:314
Alignment explanation
Indices: 92558--93180 Score: 874
Period size: 316 Copynumber: 2.0 Consensus size: 314
92548 TATTTTCTAC
* * * *
92558 GGGCATTTTCATAATTTTATAGAACCAACTCCTAGGTTGTCATCGGGTCTACTTTTATGTCGAAG
1 GGGCATTTTCATAATTTCATAGAACCAACTCCTAGGTTATCACCGGCTCTACTTTTATGTCGAAG
* *
92623 GTGGGTATTTAGGATAGTATCATCCCTTTTATAGTCTTTTTAAGTCCTTTAGGGTTACCGAGATG
66 GTGGGCATTTAGGATAGTATCATCCCTTTTATAGTCTTTTTAAGTCCTTTAGGGTTACCGAGATA
* * *
92688 CTTTTACGTCAAAGGTATACCCATAGGGGCATTTTTGTAATTTCTTAGAACCGAGTCCTAGGTTA
131 CTTTTACGTCAAAGGTATACCCATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCATAAGTTA
* * * * * *
92753 TCACTGGGTCTGCTTTTATGTCGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTCTT
196 TCACCGGGTCTGCTTTTATGCCAAAGATGGACATTTAGGATAGGTTCATCCCTTTTATGAGTATT
* * *
92818 TTTAAGTCCTTCAGGGTTGTCGAGATACTTTTACAGTCGAAGGTATACTTATAAG
261 TTTAAGTCCTTCAAGGTTGCCCAGATACTTTTAC-GTCGAAGGTATACTTATAAG
* * * *
92873 GGGCATTTTCATAATTTCCTAGAACCGAGTCTTAGGTTATCACCGGCTCTACTTTTATG-CTGAA
1 GGGCATTTTCATAATTTCATAGAACCAACTCCTAGGTTATCACCGGCTCTACTTTTATGTC-GAA
*
92937 GGTGGGCATTTAGGATAGGT-TCATCCCTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCC-AG
65 GGTGGGCATTTAGGATA-GTATCATCCCTTTTAT-AGTCTTTTTAAGTCCTTTAGGGTTACCGA-
** * * * **
93000 GATACTTTTACGTTGAAGGTATACCTATAGGTGCATTTTCGTAATTTTTTAGAATTGAGTCATAA
127 GATACTTTTACGTCAAAGGTATACCCATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCATAA
* * *
93065 GTTGTCACCGGGTCTGCTTTTATGCCAAATATGGACATTTAGGATAGGTTCATCTCTTTTATGAG
192 GTTATCACCGGGTCTGCTTTTATGCCAAAGATGGACATTTAGGATAGGTTCATCCCTTTTATGAG
*
93130 TATTTTTAAGTCCTTTAAGGTTGCCCAGATACTTTTACGTCGAAGGTATAC
257 TATTTTTAAGTCCTTCAAGGTTGCCCAGATACTTTTACGTCGAAGGTATAC
93181 CCGTAGAGGT
Statistics
Matches: 270, Mismatches: 34, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
314 1 0.00
315 97 0.36
316 172 0.64
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (314 bp):
GGGCATTTTCATAATTTCATAGAACCAACTCCTAGGTTATCACCGGCTCTACTTTTATGTCGAAG
GTGGGCATTTAGGATAGTATCATCCCTTTTATAGTCTTTTTAAGTCCTTTAGGGTTACCGAGATA
CTTTTACGTCAAAGGTATACCCATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCATAAGTTA
TCACCGGGTCTGCTTTTATGCCAAAGATGGACATTTAGGATAGGTTCATCCCTTTTATGAGTATT
TTTAAGTCCTTCAAGGTTGCCCAGATACTTTTACGTCGAAGGTATACTTATAAG
Found at i:93136 original size:157 final size:157
Alignment explanation
Indices: 92558--93288 Score: 851
Period size: 157 Copynumber: 4.6 Consensus size: 157
92548 TATTTTCTAC
* * * * * * *
92558 GGGCATTTTCATAATTT-TATAGAACCAACTCCTAGGTTGTCATCGGGTCTACTTTTATGTCGAA
1 GGGCATTTTCGTAATTTCT-TAGAACCGAGTCCTAAGTTATCACCGGGTCTACTTTTATGCCGAA
* *
92622 GGTGGGTATTTAGGATA-GTATCATCCCTTTTAT-AGTCTTTTTAAGTCCTTTAGGGTTACCGAG
65 GGTGGGCATTTAGGATAGGT-TCATCCCTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCCGAG
* * *
92685 ATGCTTTTACGTCAAAGGTATACCCATAG
129 ATACTTTTACGTCGAAGGTATACCTATAG
* * * * *
92714 GGGCATTTTTGTAATTTCTTAGAACCGAGTCCTAGGTTATCACTGGGTCTGCTTTTATGTCGAAG
1 GGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAAGTTATCACCGGGTCTACTTTTATGCCGAAG
* *
92779 GTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTCTTTTTAAGTCCTTCAGGGTTGTCGAGAT
66 GTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCCGAGAT
*
92844 ACTTTTACAGTCGAAGGTATACTTATAAG
131 ACTTTTAC-GTCGAAGGTATACCTAT-AG
* * * * * *
92873 GGGCATTTTCATAATTTCCTAGAACCGAGTCTTAGGTTATCACCGGCTCTACTTTTATGCTGAAG
1 GGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAAGTTATCACCGGGTCTACTTTTATGCCGAAG
92938 GTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCC-AGGA
66 GTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCCGA-GA
*
93002 TACTTTTACGTTGAAGGTATACCTATAG
130 TACTTTTACGTCGAAGGTATACCTATAG
* * ** * * * * *
93030 GTGCATTTTCGTAATTTTTTAGAATTGAGTCATAAGTTGTCACCGGGTCTGCTTTTATGCCAAAT
1 GGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAAGTTATCACCGGGTCTACTTTTATGCCGAAG
* * * * * *
93095 ATGGACATTTAGGATAGGTTCATCTCTTTTATGAGTATTTTTAAGTCCTTTAAGGTTGCCCAGAT
66 GTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCCGAGAT
**
93160 ACTTTTACGTCGAAGGTATACCCGTAG
131 ACTTTTACGTCGAAGGTATACCTATAG
* * * * * * * * * * *
93187 AGGTACTTTCGTATTTTTTTAAAAATCGAGTCCTAAGTTATAACCGAGTCCACTTTTATGCCAAA
1 GGGCATTTTCGTAATTTCTT-AGAACCGAGTCCTAAGTTATCACCGGGTCTACTTTTATGCCGAA
* * *
93252 GGTAGGTATTTAGGAAAGGTTCATCCCTTTTAT-AGTC
65 GGTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTC
93289 CTTTAGAAGT
Statistics
Matches: 495, Mismatches: 72, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
156 83 0.17
157 192 0.39
158 93 0.19
159 127 0.26
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (157 bp):
GGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAAGTTATCACCGGGTCTACTTTTATGCCGAAG
GTGGGCATTTAGGATAGGTTCATCCCTTTTATGAGTCTTTTTAAGTCCTTTAGGGTTGCCGAGAT
ACTTTTACGTCGAAGGTATACCTATAG
Found at i:99707 original size:13 final size:13
Alignment explanation
Indices: 99689--99713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99679 CAAAGATCAG
99689 TGTATCGATACAA
1 TGTATCGATACAA
99702 TGTATCGATACA
1 TGTATCGATACA
99714 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:99791 original size:33 final size:33
Alignment explanation
Indices: 99754--99820 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
99744 AGTAGCTTAA
99754 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
99787 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
99820 A
1 A
99821 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:99794 original size:13 final size:13
Alignment explanation
Indices: 99776--99800 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99766 CAAAAAAATA
99776 TGTATCGATACAT
1 TGTATCGATACAT
99789 TGTATCGATACA
1 TGTATCGATACA
99801 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:105717 original size:13 final size:13
Alignment explanation
Indices: 105699--105735 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
105689 AGGATCTTAG
*
105699 TATCGATACACTA
1 TATCGATACAATA
*
105712 TATCGATACAATG
1 TATCGATACAATA
105725 TATCGATACAA
1 TATCGATACAA
105736 GGGCACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:108346 original size:13 final size:13
Alignment explanation
Indices: 108328--108354 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
108318 ACATATTGCT
108328 TTGTATCGATACA
1 TTGTATCGATACA
108341 TTGTATCGATACA
1 TTGTATCGATACA
108354 T
1 T
108355 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:110006 original size:11 final size:11
Alignment explanation
Indices: 109990--110016 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
109980 TTTAAGCAAG
109990 AGAAAAAGACA
1 AGAAAAAGACA
110001 AGAAAAAGACA
1 AGAAAAAGACA
110012 AGAAA
1 AGAAA
110017 GAAAAGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.74, C:0.07, G:0.19, T:0.00
Consensus pattern (11 bp):
AGAAAAAGACA
Found at i:111606 original size:37 final size:37
Alignment explanation
Indices: 111547--111625 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
111537 TGTGGCGGCT
*
111547 GTCAAAAAGTCCTGCACAACTCACAAGTGTACTAAAC
1 GTCAAAAAGTCCGGCACAACTCACAAGTGTACTAAAC
* * *
111584 GTCAAAAAGTCCGGCACTACTCACTAGTGTACTAGAC
1 GTCAAAAAGTCCGGCACAACTCACAAGTGTACTAAAC
111621 GTCAA
1 GTCAA
111626 TGCCCTCAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.20
Consensus pattern (37 bp):
GTCAAAAAGTCCGGCACAACTCACAAGTGTACTAAAC
Found at i:111849 original size:18 final size:18
Alignment explanation
Indices: 111828--111882 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
111818 ATTAATTATT
111828 ATAAATATATTATTTAAA
1 ATAAATATATTATTTAAA
* *
111846 ATAAAAATAATTA-ATAAA
1 ATAAATAT-ATTATTTAAA
* *
111864 ATAAATTTATTTTTTAAA
1 ATAAATATATTATTTAAA
111882 A
1 A
111883 ATTTTTCATT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
17 3 0.10
18 22 0.76
19 4 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAATATATTATTTAAA
Found at i:112444 original size:20 final size:19
Alignment explanation
Indices: 112409--112450 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
112399 TAAAATATAT
*
112409 AATTTTAAAAAATTAAAAA
1 AATTTAAAAAAATTAAAAA
*
112428 AATTTAAAAATAATTAATAA
1 AATTTAAAAA-AATTAAAAA
112448 AAT
1 AAT
112451 ATTTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTTAAAAAAATTAAAAA
Found at i:112938 original size:21 final size:20
Alignment explanation
Indices: 112898--112947 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 20
112888 AAATATTTTT
*
112898 TTTAAATATATATTATATTA
1 TTTAAATAAATATTATATTA
112918 TTTAAA-AAATATTA-A-TA
1 TTTAAATAAATATTATATTA
*
112935 ATTAAA-AAATATT
1 TTTAAATAAATATT
112948 GAATCAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 14 0.50
18 1 0.04
19 7 0.25
20 6 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTAAATAAATATTATATTA
Found at i:112959 original size:19 final size:17
Alignment explanation
Indices: 112920--112960 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
112910 TTATATTATT
*
112920 TAAAAAATATTAATAAT
1 TAAAAAATATTAATAAA
112937 TAAAAAATATTGAATCAAA
1 TAAAAAATATT-AAT-AAA
112956 TAAAA
1 TAAAA
112961 TAAAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.52
18 3 0.14
19 7 0.33
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAAAATATTAATAAA
Found at i:122316 original size:69 final size:67
Alignment explanation
Indices: 122235--122408 Score: 233
Period size: 69 Copynumber: 2.5 Consensus size: 67
122225 AGATTATAAG
* *
122235 AGTTTAATTTTTTAAAATATAATTTATTTTTATTTATAAAAGTTTAAATATAATTTTGGAT-ATG
1 AGTTTAAATTTTTAAAATATGATTTATTTTTATTTATAAAAGTTTAAAT-T--TTTTGGATGATG
*
122299 ATATA
63 ATACA
* * * *
122304 AGTTTAAATTTTTAAAGTATGATTTATTTTTATTTGTAAAAGTTTAAATTTTTTGTATGATTATA
1 AGTTTAAATTTTTAAAATATGATTTATTTTTATTTATAAAAGTTTAAATTTTTTGGATGATGATA
122369 CA
66 CA
122371 AGTTTAAAATATTTTAAAATATGATTTATTTTTATTTA
1 AGTTT-AAAT-TTTTAAAATATGATTTATTTTTATTTA
122409 ATTTGACTTT
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
66 7 0.08
67 11 0.12
68 5 0.05
69 70 0.75
ACGTcount: A:0.38, C:0.01, G:0.08, T:0.53
Consensus pattern (67 bp):
AGTTTAAATTTTTAAAATATGATTTATTTTTATTTATAAAAGTTTAAATTTTTTGGATGATGATA
CA
Found at i:122797 original size:14 final size:14
Alignment explanation
Indices: 122778--122804 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
122768 ATTGTGTAAT
122778 TTAGTTTAATTTTA
1 TTAGTTTAATTTTA
122792 TTAGTTTAATTTT
1 TTAGTTTAATTTT
122805 TGTTGAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (14 bp):
TTAGTTTAATTTTA
Found at i:123453 original size:19 final size:19
Alignment explanation
Indices: 123404--123455 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
123394 AGTTTTAAGA
*
123404 TCAAGAGAAAAATTATATC
1 TCAAGAGAAAAATAATATC
* *
123423 TCATATAAAAAAATGAATAT-
1 TCA-AGAGAAAAAT-AATATC
123443 TCAAGAGAAAAAT
1 TCAAGAGAAAAAT
123456 TAGCTTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
19 11 0.42
20 11 0.42
21 4 0.15
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.25
Consensus pattern (19 bp):
TCAAGAGAAAAATAATATC
Found at i:124117 original size:22 final size:24
Alignment explanation
Indices: 124091--124144 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 24
124081 TATAATTTTA
124091 AAATTCATC-AAAT-ATTTTTATT
1 AAATTCATCTAAATCATTTTTATT
*
124113 AAATTCATCTTAAATCATTTTTTTT
1 AAATTCATC-TAAATCATTTTTATT
124138 AAATTCA
1 AAATTCA
124145 ATTTATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 9 0.32
24 4 0.14
25 15 0.54
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (24 bp):
AAATTCATCTAAATCATTTTTATT
Found at i:124320 original size:5 final size:5
Alignment explanation
Indices: 124269--124334 Score: 55
Period size: 5 Copynumber: 12.8 Consensus size: 5
124259 ATTTCCATAG
* * *
124269 TTTTA -TTTA TTGTTA -TTAA TTTTAA TTTTC TTTTAA TTTTG TGTTTA
1 TTTTA TTTTA TT-TTA TTTTA TTTT-A TTTTA TTTT-A TTTTA T-TTTA
124316 TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
124335 TACTAGTTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
4 6 0.12
5 27 0.55
6 16 0.33
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:125538 original size:30 final size:31
Alignment explanation
Indices: 125498--125566 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
125488 TTTGGTCAAA
* * *
125498 TGATTATTATGAT-T-TTTGGTGTGGTTTTTG
1 TGATTTTTATGATGTGTTTAGTGTGG-ATTTG
*
125528 TGATTTTTATGATGTGTTTAGTGTTGATTTG
1 TGATTTTTATGATGTGTTTAGTGTGGATTTG
125559 TGATTTTT
1 TGATTTTT
125567 TATCATGTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 12 0.36
31 13 0.39
32 8 0.24
ACGTcount: A:0.14, C:0.00, G:0.25, T:0.61
Consensus pattern (31 bp):
TGATTTTTATGATGTGTTTAGTGTGGATTTG
Found at i:127296 original size:175 final size:176
Alignment explanation
Indices: 126995--127336 Score: 569
Period size: 175 Copynumber: 1.9 Consensus size: 176
126985 TCACCTGGTA
* * *
126995 AAATAAATTGGTGGCGACTCTAAACAAATATTTATTTCATAATAATTATTTAAGGTTAAATTGAG
1 AAATAAATTGGTGACGACTCTAAACAAATAGTTATTTCATAATAATTATTTAAGGTTAAATTGAA
*
127060 TAAGCAATTCATCTTGACCACACACTCCCTGGAAATAAGAAAATATTCATAACGATATGACCTAT
66 TAAGCAATTCACCTTGACCACACACTCCCTGGAAATAAGAAAATATTCATAACGATATGACCTAT
127125 GTAAATAAAAGAATTTCAAATGGTGATATATTAATAAGAGAATTTC
131 GTAAATAAAAGAATTTCAAATGGTGATATATTAATAAGAGAATTTC
* *
127171 AAATAGATTGGTGACGACTCTAAACAAATAGTTATTTCATAATAA-TATTTAAGGTTAAGTTGAA
1 AAATAAATTGGTGACGACTCTAAACAAATAGTTATTTCATAATAATTATTTAAGGTTAAATTGAA
* * * * *
127235 TAAGCAATTCACCTTGGCCACGCAGTCGCTGGAAATAAGAAAATATTCATAACGCTATGACCTAT
66 TAAGCAATTCACCTTGACCACACACTCCCTGGAAATAAGAAAATATTCATAACGATATGACCTAT
*
127300 GTAAATAAGAGAATTTCAAATGGTGATATATTAATAA
131 GTAAATAAAAGAATTTCAAATGGTGATATATTAATAA
127337 ATATTAAATG
Statistics
Matches: 154, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
175 112 0.73
176 42 0.27
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (176 bp):
AAATAAATTGGTGACGACTCTAAACAAATAGTTATTTCATAATAATTATTTAAGGTTAAATTGAA
TAAGCAATTCACCTTGACCACACACTCCCTGGAAATAAGAAAATATTCATAACGATATGACCTAT
GTAAATAAAAGAATTTCAAATGGTGATATATTAATAAGAGAATTTC
Found at i:128529 original size:77 final size:78
Alignment explanation
Indices: 128377--128531 Score: 303
Period size: 78 Copynumber: 2.0 Consensus size: 78
128367 TAATGCCTTA
128377 GAGGATTTGCTTAGGGCAAAGATTTTTTTTATATTTTATTGCTGTGCTAATTCATTTTTTCTTTT
1 GAGGATTTGCTTAGGGCAAAGATTTTTTTTATATTTTATTGCTGTGCTAATTCATTTTTTCTTTT
128442 CTTTTATTTATAT
66 CTTTTATTTATAT
128455 GAGGATTTGCTTAGGGCAAAGATTTTTTTTATATTTTATTGCTGTGCTAATTCATTTTTT-TTTT
1 GAGGATTTGCTTAGGGCAAAGATTTTTTTTATATTTTATTGCTGTGCTAATTCATTTTTTCTTTT
128519 CTTTTATTTATAT
66 CTTTTATTTATAT
128532 ATTATTGTAC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 17 0.22
78 60 0.78
ACGTcount: A:0.21, C:0.08, G:0.14, T:0.57
Consensus pattern (78 bp):
GAGGATTTGCTTAGGGCAAAGATTTTTTTTATATTTTATTGCTGTGCTAATTCATTTTTTCTTTT
CTTTTATTTATAT
Found at i:133015 original size:140 final size:139
Alignment explanation
Indices: 132672--133185 Score: 552
Period size: 140 Copynumber: 3.6 Consensus size: 139
132662 AAAAATCAAG
* ** *
132672 AGATACAAAAAATTTTAAAAATTTTTATACCTTTATAAAAAACCATAGGAATATTAGAAATCTTG
1 AGATACAAAAAATTTTAAAAATTTTTATACC-CTA-CGAAAACCATAAGAATATTAGAAATCTTG
* * * * * * *
132737 AAAAGTTAAGACAATAATTTTTTATTTAATTTTTAGTTTCTAAAAAATTTATTTCATACCTTAAC
64 AAAAATTAAGATAATAA-TTTTTATTTAATTTTTAATTTTTAAAAAATTTATTTCGTACTTTAAT
** *
132802 GGAGAATCGAAAA
128 AAAGAA-CCAAAA
* **
132815 A-ATACCAAAAAA-TTTAAAAATTTTTATACTCCTACGGAAAATCATTGGAATATTAGAAATCTT
1 AGATA-CAAAAAATTTTAAAAATTTTTATAC-CCTAC-GAAAACCATAAGAATATTAGAAATCTT
* *
132878 GAAAAACTAAAATAATAATTTTTATTTAATTTTTAATTTTTAAAAAATTTATTTCGTACTTTAAT
63 GAAAAATTAAGATAATAATTTTTATTTAATTTTTAATTTTTAAAAAATTTATTTCGTACTTTAAT
*
132943 ATAGAACCAAAA
128 AAAGAACCAAAA
** * * * *
132955 AGATA-TGAAAGTTTTGAAAATTTTTATACCTTGATCGAAAGCCATAAGAATATTAGAAATCTTG
1 AGATACAAAAAATTTTAAAAATTTTTATACCCT-A-CGAAAACCATAAGAATATTAGAAATCTTG
* * * *
133019 AAAAATTAGGATAATAATTTTTATTTAATTTTTAA-TTTTAAAAAAATCATTTTGTA-TCTTAAT
64 AAAAATTAAGATAATAATTTTTATTTAATTTTTAATTTTTAAAAAATTTATTTCGTACT-TTAAT
* *
133082 AAAGAATCGAAA
128 AAAGAACCAAAA
* * **
133094 AGATACAAAAAATTTTAAAGATTTCTATACCCCTACGAAAAATTATAAGAATATTAGAAATCTTG
1 AGATACAAAAAATTTTAAAAATTTTTATA-CCCTACG-AAAACCATAAGAATATTAGAAATCTTG
*
133159 AAAAATTAAGATTATAATTTTTATTTA
64 AAAAATTAAGATAATAATTTTTATTTA
133186 GTGATAAAAT
Statistics
Matches: 313, Mismatches: 47, Indels: 25
0.81 0.12 0.06
Matches are distributed among these distances:
138 1 0.00
139 44 0.14
140 146 0.47
141 53 0.17
142 60 0.19
143 9 0.03
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (139 bp):
AGATACAAAAAATTTTAAAAATTTTTATACCCTACGAAAACCATAAGAATATTAGAAATCTTGAA
AAATTAAGATAATAATTTTTATTTAATTTTTAATTTTTAAAAAATTTATTTCGTACTTTAATAAA
GAACCAAAA
Found at i:134110 original size:24 final size:22
Alignment explanation
Indices: 134075--134129 Score: 74
Period size: 24 Copynumber: 2.4 Consensus size: 22
134065 TCCTGACTAA
* *
134075 TCTTTTTGTTTTTTTTCTTTTC
1 TCTTTTTCTTTTTTTTCTTCTC
134097 TTCCTTTTTCTTTTTTTTCTTCTC
1 -T-CTTTTTCTTTTTTTTCTTCTC
134121 TCTTTTTCT
1 TCTTTTTCT
134130 CTCTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 8 0.28
23 2 0.07
24 19 0.66
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (22 bp):
TCTTTTTCTTTTTTTTCTTCTC
Found at i:134114 original size:19 final size:18
Alignment explanation
Indices: 134083--134118 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
134073 AATCTTTTTG
134083 TTTTTTTTCTTTTCTTCC
1 TTTTTTTTCTTTTCTTCC
*
134101 TTTTTCTTTTTTTTCTTC
1 TTTTT-TTTCTTTTCTTC
134119 TCTCTTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTTTCTTTTCTTCC
Found at i:137441 original size:9 final size:8
Alignment explanation
Indices: 137402--137441 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
137392 TTGGTTAAAG
137402 AAAAATAA
1 AAAAATAA
*
137410 AAAAAGAA
1 AAAAATAA
*
137418 AAAAAGAA
1 AAAAATAA
137426 AAAAATAA
1 AAAAATAA
137434 AAATAATA
1 AAA-AATA
137442 TAGAAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 25 0.86
9 4 0.14
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (8 bp):
AAAAATAA
Found at i:137679 original size:19 final size:19
Alignment explanation
Indices: 137652--137690 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
137642 CATAATGTAT
137652 TTTACTATTAAGTAATATA
1 TTTACTATTAAGTAATATA
* *
137671 TTTATTATTAAGTAGTATA
1 TTTACTATTAAGTAATATA
137690 T
1 T
137691 ATAGTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (19 bp):
TTTACTATTAAGTAATATA
Found at i:137811 original size:17 final size:18
Alignment explanation
Indices: 137786--137819 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
137776 AATCACTAGA
*
137786 TTAATAATTTTA-ATTTG
1 TTAAGAATTTTATATTTG
137803 TTAAGAATTTTATATTT
1 TTAAGAATTTTATATTT
137820 TCAATCGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (18 bp):
TTAAGAATTTTATATTTG
Found at i:138759 original size:2 final size:2
Alignment explanation
Indices: 138752--138776 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
138742 CATTTCGCAA
138752 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
138777 GATTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:140251 original size:25 final size:25
Alignment explanation
Indices: 140223--140272 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
140213 AATGCTTTTC
140223 CAGACAAAGGTA-CCTCATGCATGCA
1 CAGACAAAGGTAGCCT-ATGCATGCA
* *
140248 CAGACATAGGTAGCCTGTGCATGCA
1 CAGACAAAGGTAGCCTATGCATGCA
140273 GATACATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.32, C:0.26, G:0.24, T:0.18
Consensus pattern (25 bp):
CAGACAAAGGTAGCCTATGCATGCA
Found at i:145368 original size:5 final size:5
Alignment explanation
Indices: 145358--145390 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
145348 TCTTAAACCT
145358 CCCAC CCCAC CCCAC CCCAC CCCAC CCCAC CCC
1 CCCAC CCCAC CCCAC CCCAC CCCAC CCCAC CCC
145391 TTCTTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.82, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCAC
Found at i:146463 original size:344 final size:344
Alignment explanation
Indices: 145836--146522 Score: 1277
Period size: 344 Copynumber: 2.0 Consensus size: 344
145826 AAATTCAGAG
* *
145836 GATTCAATGATTAATTTTCTGTTGTAGCCTTTATAAAGTATAAATAACGCAAAAACAACGTAATA
1 GATTCAATGATTAATTTGCTGTTGTAACCTTTATAAAGTATAAATAACGCAAAAACAACGTAATA
*
145901 AATTATCTCCCCATCAATCTAACCAGCATCTTTCAGTCACAATATCCTCACATCACTTATTCATT
66 AATTATCTCCCCATCAATCTAACCAGCATCTTTCAGTCAAAATATCCTCACATCACTTATTCATT
*
145966 TCACACAATCTACTCTATTACGATCTTTTAGATCTCCTTTTTGGGTCAATACTAATCGCTGCTAA
131 TCACACAACCTACTCTATTACGATCTTTTAGATCTCCTTTTTGGGTCAATACTAATCGCTGCTAA
146031 ATGCTGAAATCAATACTCTTAGGAACCAGCTGGATATCAGCTTTGACTCTATCGTCATTTCTAGT
196 ATGCTGAAATCAATACTCTTAGGAACCAGCTGGATATCAGCTTTGACTCTATCGTCATTTCTAGT
*
146096 TTTACCACCAGGCTACCACTAAACCTACTCTCTATAGATTCTGTTTTCGCCCTAAATCAATCTTT
261 TTTACCACCAGGCTACCACTAAACCTACTCTCTACAGATTCTGTTTTCGCCCTAAATCAATCTTT
146161 AGATTCTGAGTACTCTTTA
326 AGATTCTGAGTACTCTTTA
146180 GATTCAATGATTAATTTGCTGTTGTAACCTTTATAAAGTATAAATAACGCAAAAACAACGTAATA
1 GATTCAATGATTAATTTGCTGTTGTAACCTTTATAAAGTATAAATAACGCAAAAACAACGTAATA
*
146245 AATTATCTCCCCATCAATCTAACCAGCATCTTTCAGTCAAAATATCCTCACATGACTTATTCATT
66 AATTATCTCCCCATCAATCTAACCAGCATCTTTCAGTCAAAATATCCTCACATCACTTATTCATT
*
146310 TCACACAACCTACTCTATTACTATCTTTTAGATCTCCTTTTTGGGTCAATA-TCAATCGCTGCTA
131 TCACACAACCTACTCTATTACGATCTTTTAGATCTCCTTTTTGGGTCAATACT-AATCGCTGCTA
* *
146374 AATGCTGAAATCAATACTCTTAGGAACCAGCTGGCTATCAGCTTTGACTCTATCTTCATTTCTAG
195 AATGCTGAAATCAATACTCTTAGGAACCAGCTGGATATCAGCTTTGACTCTATCGTCATTTCTAG
146439 TTTTACCACCAGGCTACCACTAAACCTACTCTCTACAGATTCTGTTTTCGCCCTAAATCAATCTT
260 TTTTACCACCAGGCTACCACTAAACCTACTCTCTACAGATTCTGTTTTCGCCCTAAATCAATCTT
146504 TAGATTCTGAGTACTCTTT
325 TAGATTCTGAGTACTCTTT
146523 CAACTCTAGT
Statistics
Matches: 333, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
343 1 0.00
344 332 1.00
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.35
Consensus pattern (344 bp):
GATTCAATGATTAATTTGCTGTTGTAACCTTTATAAAGTATAAATAACGCAAAAACAACGTAATA
AATTATCTCCCCATCAATCTAACCAGCATCTTTCAGTCAAAATATCCTCACATCACTTATTCATT
TCACACAACCTACTCTATTACGATCTTTTAGATCTCCTTTTTGGGTCAATACTAATCGCTGCTAA
ATGCTGAAATCAATACTCTTAGGAACCAGCTGGATATCAGCTTTGACTCTATCGTCATTTCTAGT
TTTACCACCAGGCTACCACTAAACCTACTCTCTACAGATTCTGTTTTCGCCCTAAATCAATCTTT
AGATTCTGAGTACTCTTTA
Found at i:147851 original size:11 final size:11
Alignment explanation
Indices: 147835--147859 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
147825 TAACTTCAAT
147835 AATCCATAAAC
1 AATCCATAAAC
147846 AATCCATAAAC
1 AATCCATAAAC
147857 AAT
1 AAT
147860 GATATCCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (11 bp):
AATCCATAAAC
Found at i:152007 original size:36 final size:36
Alignment explanation
Indices: 151966--152046 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
151956 TGGGGACAAC
*
151966 GGTAGTGACTGAACCTAGTTTTGAGACTCAAATTGT
1 GGTAGTGACTGAACCTAGTTTTGAGACTCAAAATGT
* * * *
152002 GGTAGTGACTTAGCTTGGTTTTGAGACTCAAAATGT
1 GGTAGTGACTGAACCTAGTTTTGAGACTCAAAATGT
*
152038 GGCAGTGAC
1 GGTAGTGAC
152047 AGATTTTGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (36 bp):
GGTAGTGACTGAACCTAGTTTTGAGACTCAAAATGT
Found at i:152056 original size:36 final size:36
Alignment explanation
Indices: 151983--152059 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
151973 ACTGAACCTA
* * **
151983 GTTTTGAGACTCAAATTGTGGTAGTGACTTAGCTTG
1 GTTTTGAGACTCAAAATGTGGCAGTGACAGAGCTTG
**
152019 GTTTTGAGACTCAAAATGTGGCAGTGACAGATTTTG
1 GTTTTGAGACTCAAAATGTGGCAGTGACAGAGCTTG
152055 GTTTT
1 GTTTT
152060 TGTTATGTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.39
Consensus pattern (36 bp):
GTTTTGAGACTCAAAATGTGGCAGTGACAGAGCTTG
Found at i:159039 original size:18 final size:18
Alignment explanation
Indices: 159010--159050 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
159000 TTTATCCCTT
159010 TATTTTTTTAAAT-TTTA
1 TATTTTTTTAAATATTTA
159027 TATTTTCTTTAAATAATTTA
1 TATTTT-TTTAAAT-ATTTA
159047 TATT
1 TATT
159051 ATAATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 7 0.33
20 8 0.38
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTTTTTAAATATTTA
Found at i:159557 original size:18 final size:18
Alignment explanation
Indices: 159496--159564 Score: 66
Period size: 18 Copynumber: 3.6 Consensus size: 18
159486 AAATAAAAAC
*
159496 AAATAAAATAATTTATAA
1 AAATAAAATAAATTATAA
* *
159514 AATTATTTAAATTAAATTTTTAA
1 AA--A--TAAAATAAA-TTATAA
159537 AAATAAAATAAATTATAA
1 AAATAAAATAAATTATAA
159555 AAATAAAATA
1 AAATAAAATA
159565 TTTATGTACA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
18 17 0.41
19 8 0.20
20 1 0.02
21 1 0.02
22 7 0.17
23 7 0.17
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATAAAATAAATTATAA
Found at i:159720 original size:8 final size:8
Alignment explanation
Indices: 159707--159732 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
159697 AAAAATATTT
159707 TATTTTTA
1 TATTTTTA
159715 TATTTTTA
1 TATTTTTA
159723 TATTTTTA
1 TATTTTTA
159731 TA
1 TA
159733 AAAATCTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTTTTA
Found at i:160145 original size:19 final size:18
Alignment explanation
Indices: 160121--160163 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
160111 ATCAAGAGGA
160121 AAAAAATGAAAAAAAAGCT
1 AAAAAATGAAAAAAAA-CT
*
160140 AAAAAA-GGAAAAAAACT
1 AAAAAATGAAAAAAAACT
160157 AAAAAAT
1 AAAAAAT
160164 AATTTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.77, C:0.05, G:0.09, T:0.09
Consensus pattern (18 bp):
AAAAAATGAAAAAAAACT
Found at i:160333 original size:16 final size:16
Alignment explanation
Indices: 160290--160341 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
160280 TATAAATTTG
160290 AAAAAGAAAATTAAGGAA
1 AAAAAGAAAA--AAGGAA
* **
160308 TAAATTAAAAAAGGAA
1 AAAAAGAAAAAAGGAA
160324 AAAAAGAAAAAA-GAA
1 AAAAAGAAAAAAGGAA
160339 AAA
1 AAA
160342 TGACATCAGC
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 6 0.21
16 15 0.54
18 7 0.25
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAAGAAAAAAGGAA
Found at i:163553 original size:19 final size:19
Alignment explanation
Indices: 163529--163591 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
163519 TAGCCAAACT
163529 TGTATCGATACACAAAGTA
1 TGTATCGATACACAAAGTA
163548 TGTATCGAT--AC--A--A
1 TGTATCGATACACAAAGTA
163561 TGTATCGATACACAAAGTA
1 TGTATCGATACACAAAGTA
163580 TGTATCGATACA
1 TGTATCGATACA
163592 ATGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 10 0.26
15 3 0.08
17 3 0.08
19 22 0.58
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (19 bp):
TGTATCGATACACAAAGTA
Found at i:163565 original size:13 final size:13
Alignment explanation
Indices: 163547--163604 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
163537 TACACAAAGT
163547 ATGTATCGATACA
1 ATGTATCGATACA
163560 ATGTATCGATACACAAA
1 ATGTATCGAT--AC--A
163577 GTATGTATCGATACA
1 --ATGTATCGATACA
163592 ATGTATCGATACA
1 ATGTATCGATACA
163605 CAAAAAATTG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.59
15 3 0.08
17 3 0.08
19 10 0.26
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:163570 original size:32 final size:32
Alignment explanation
Indices: 163529--163624 Score: 165
Period size: 32 Copynumber: 3.0 Consensus size: 32
163519 TAGCCAAACT
163529 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAGTATGTATCGATACAA
163561 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAGTATGTATCGATACAA
**
163593 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAGTA-TGTATCGATACA
163625 TTGGCTTGTA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
32 49 0.80
33 12 0.20
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACAAAGTATGTATCGATACAA
Found at i:164030 original size:234 final size:233
Alignment explanation
Indices: 163622--164088 Score: 898
Period size: 234 Copynumber: 2.0 Consensus size: 233
163612 TTGTATCGAT
*
163622 ACATTGGCTTGTAATGGCTAGAAACGGCTATATTTTCAAATATGTATCGATACATCAAAATTGTA
1 ACATTGGCTTGTAACGGCTAGAAACGGCTATATTTTCAAATATGTATCGATACATCAAAATTGTA
163687 TCGATACATTCACACGGGAAATCATTAAAATAAGCTCCAAACAAGCCAATAATGGCTAGAAACTC
66 TCGATACATTCACACGGGAAATCATTAAAATAAGCTCCAAACAAGCCAATAATGGCTAGAAACTC
*
163752 CACTAATCAAACTCCAACGGGTACAACAACATTGAAGCCTATAAATAAGAGCTTCCAGTAGCAAA
131 CACTAATCAAACTCCAACGGGTACAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAAA
163817 ACACAAAAAAGAAGAGAGAAGTAGAACCAAGCAAGAAA
196 ACACAAAAAAGAAGAGAGAAGTAGAACCAAGCAAGAAA
163855 ACATTGGCTTGTAACGGCTAGAAACGGCTATATTTTCAAATATGTATCGATACATCAAAAATTGT
1 ACATTGGCTTGTAACGGCTAGAAACGGCTATATTTTCAAATATGTATCGATACATC-AAAATTGT
163920 ATCGATACATTCACACGGGAAATCATTAAAATAAGCTCCAAACAAGCCAATAATGGCTAGAAACT
65 ATCGATACATTCACACGGGAAATCATTAAAATAAGCTCCAAACAAGCCAATAATGGCTAGAAACT
*
163985 CCACTAATCAAACTCCAACGGGTACAACAACATTGAAGCCTATAAATAAGAGCTTCTAGCAGCAA
130 CCACTAATCAAACTCCAACGGGTACAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAA
164050 AACACAAAAAAGAAGAGAGAAGTAGAACCAAGCAAGAAA
195 AACACAAAAAAGAAGAGAGAAGTAGAACCAAGCAAGAAA
164089 CATCTAGCAT
Statistics
Matches: 230, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
233 55 0.24
234 175 0.76
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.20
Consensus pattern (233 bp):
ACATTGGCTTGTAACGGCTAGAAACGGCTATATTTTCAAATATGTATCGATACATCAAAATTGTA
TCGATACATTCACACGGGAAATCATTAAAATAAGCTCCAAACAAGCCAATAATGGCTAGAAACTC
CACTAATCAAACTCCAACGGGTACAACAACATTGAAGCCTATAAATAAGAGCTTCCAGCAGCAAA
ACACAAAAAAGAAGAGAGAAGTAGAACCAAGCAAGAAA
Found at i:169357 original size:20 final size:20
Alignment explanation
Indices: 169331--169410 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
169321 AATATCCAAA
169331 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATGTTTCT
* * *
169351 GTGTATCGATACATATGGAAATTCA
1 ATGTATCGATAC--AT-G--TTTCT
*
169376 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATGTTTCT
*
169396 TTGTATCGATACATG
1 ATGTATCGATACATG
169411 GTATCGATAC
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
20 27 0.59
22 2 0.04
23 3 0.07
25 14 0.30
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATGTTTCT
Found at i:171957 original size:13 final size:13
Alignment explanation
Indices: 171939--171964 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
171929 TACACAAAGT
171939 ATGTATCGATACA
1 ATGTATCGATACA
171952 ATGTATCGATACA
1 ATGTATCGATACA
171965 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:171962 original size:32 final size:33
Alignment explanation
Indices: 171921--171984 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
171911 TAGCCAAACT
**
171921 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
171953 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
171985 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:173867 original size:13 final size:13
Alignment explanation
Indices: 173849--173874 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
173839 TACAGCAAGT
173849 ATGTATCGATACA
1 ATGTATCGATACA
173862 ATGTATCGATACA
1 ATGTATCGATACA
173875 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:176121 original size:21 final size:21
Alignment explanation
Indices: 176088--176132 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
176078 TTGCAAGTTG
*
176088 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
176110 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
176130 AAA
1 AAA
176133 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:177956 original size:15 final size:15
Alignment explanation
Indices: 177936--177966 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
177926 TAAAAATGTC
*
177936 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
177951 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
177966 C
1 C
177967 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:180058 original size:20 final size:20
Alignment explanation
Indices: 179979--180058 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
179969 AATGTCCAAA
*
179979 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
179999 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
180024 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
180044 TTGTATCGATACATT
1 ATGTATCGATACATT
180059 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:180062 original size:13 final size:13
Alignment explanation
Indices: 180044--180082 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
180034 ACATTTTTCT
180044 TTGTATCGATACA
1 TTGTATCGATACA
180057 TTGTATCGATACA
1 TTGTATCGATACA
*
180070 CTGTATCGATACA
1 TTGTATCGATACA
180083 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:182623 original size:13 final size:13
Alignment explanation
Indices: 182605--182630 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
182595 TACAGCAAGT
182605 ATGTATCGATACA
1 ATGTATCGATACA
182618 ATGTATCGATACA
1 ATGTATCGATACA
182631 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:192996 original size:13 final size:13
Alignment explanation
Indices: 192978--193002 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
192968 CATTTTATGG
192978 TGTATCGATACAA
1 TGTATCGATACAA
192991 TGTATCGATACA
1 TGTATCGATACA
193003 TACTATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:193018 original size:32 final size:33
Alignment explanation
Indices: 192955--193022 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
192945 CGTTACAAGC
**
192955 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
192988 CAATGTATCGATACATACTAT-GTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
193020 CAA
1 CAA
193023 GTTTGGCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 14 0.42
33 19 0.58
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGGTGTATCGATA
Found at i:194433 original size:13 final size:13
Alignment explanation
Indices: 194415--194439 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
194405 ATGTTGCTTA
194415 GTATCGATACATT
1 GTATCGATACATT
194428 GTATCGATACAT
1 GTATCGATACAT
194440 GTTCTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:198638 original size:25 final size:25
Alignment explanation
Indices: 198610--198677 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 25
198600 AGAAAAATTC
198610 TATTAAGGGGGAGTATTAAATATTT
1 TATTAAGGGGGAGTATTAAATATTT
* *
198635 TATTAAGGGTTGAG-A--CAA-ATTT
1 TATTAAGGG-GGAGTATTAAATATTT
198657 TATTAAGGGGGAGTATTAAAT
1 TATTAAGGGGGAGTATTAAAT
198678 TAAAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
21 3 0.09
22 14 0.41
23 2 0.06
24 2 0.06
25 10 0.29
26 3 0.09
ACGTcount: A:0.37, C:0.01, G:0.25, T:0.37
Consensus pattern (25 bp):
TATTAAGGGGGAGTATTAAATATTT
Found at i:199385 original size:20 final size:20
Alignment explanation
Indices: 199337--199392 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
199327 AGTATCGATA
*
199337 AATTGTATCGATACAT-GTT
1 AATTGTATCGATACATACTT
*
199356 -CTTAGTATCGATACATACTT
1 AATT-GTATCGATACATACTT
199376 AATTGTATCGATACATA
1 AATTGTATCGATACATA
199393 AAACTAGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 2 0.06
19 12 0.39
20 15 0.48
21 2 0.06
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.39
Consensus pattern (20 bp):
AATTGTATCGATACATACTT
Done.