Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2422
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 193378
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
File 1 of 2
Found at i:605 original size:20 final size:20
Alignment explanation
Indices: 581--624 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
571 AAAATTTAAA
*
581 AAAAAAGGAA-AAGAAAAAGAG
1 AAAAAA-GAATAA-AAAAAAAG
602 AAAAAAGAATAAAAAAAAAG
1 AAAAAAGAATAAAAAAAAAG
622 AAA
1 AAA
625 GCTTTCATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (20 bp):
AAAAAAGAATAAAAAAAAAG
Found at i:619 original size:22 final size:21
Alignment explanation
Indices: 581--622 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
571 AAAATTTAAA
* *
581 AAAAAAGGAAAAGAAAAAGAG
1 AAAAAAGAAAAAAAAAAAGAG
602 AAAAAAGAATAAAAAAAAAGA
1 AAAAAAGAA-AAAAAAAAAGA
623 AAGCTTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (21 bp):
AAAAAAGAAAAAAAAAAAGAG
Found at i:1187 original size:39 final size:39
Alignment explanation
Indices: 1137--1266 Score: 187
Period size: 39 Copynumber: 3.4 Consensus size: 39
1127 GTTATTTGGG
* * *
1137 AATTTCGAGTCAAAATTGGGTTTTTAGGGTTATTTTGAT
1 AATTTTGAGTCAAAATTGGGTTTTTAGGGATATTTTAAT
1176 AATTTTGAGTCAAAATTGGGTTTTTAGGGATATTTTAAT
1 AATTTTGAGTCAAAATTGGGTTTTTAGGGATATTTTAAT
*
1215 GATTTTGAGTC---A-TGGGTTTTTAGGGATATTTTAAT
1 AATTTTGAGTCAAAATTGGGTTTTTAGGGATATTTTAAT
*
1250 GATTTTGAGTCAAAATT
1 AATTTTGAGTCAAAATT
1267 AAATTTTTAT
Statistics
Matches: 83, Mismatches: 4, Indels: 8
0.87 0.04 0.08
Matches are distributed among these distances:
35 34 0.41
36 1 0.01
38 1 0.01
39 47 0.57
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (39 bp):
AATTTTGAGTCAAAATTGGGTTTTTAGGGATATTTTAAT
Found at i:1238 original size:35 final size:36
Alignment explanation
Indices: 1151--1261 Score: 161
Period size: 35 Copynumber: 3.0 Consensus size: 36
1141 TCGAGTCAAA
* * *
1151 ATTGGGTTTTTAGGGTTATTTTGATAATTTTGAGTC
1 ATTGGGTTTTTAGGGATATTTTAATGATTTTGAGTC
1187 AAAATTGGGTTTTTAGGGATATTTTAATGATTTTGAGTC
1 ---ATTGGGTTTTTAGGGATATTTTAATGATTTTGAGTC
1226 A-TGGGTTTTTAGGGATATTTTAATGATTTTGAGTC
1 ATTGGGTTTTTAGGGATATTTTAATGATTTTGAGTC
1261 A
1 A
1262 AAATTAAATT
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
35 35 0.51
36 1 0.01
39 33 0.48
ACGTcount: A:0.24, C:0.03, G:0.24, T:0.49
Consensus pattern (36 bp):
ATTGGGTTTTTAGGGATATTTTAATGATTTTGAGTC
Found at i:1776 original size:16 final size:16
Alignment explanation
Indices: 1755--1785 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1745 TAAATACTTA
1755 TTAATTTTTAATTTTT
1 TTAATTTTTAATTTTT
1771 TTAATTTTTAATTTT
1 TTAATTTTTAATTTT
1786 AGTATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTAATTTTTAATTTTT
Found at i:1794 original size:16 final size:16
Alignment explanation
Indices: 1756--1794 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
1746 AAATACTTAT
**
1756 TAATTTTTAATTTTTT
1 TAATTTTTAATTTTAG
1772 TAATTTTTAATTTTAG
1 TAATTTTTAATTTTAG
1788 T-ATTTTT
1 TAATTTTT
1795 GTCACTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (16 bp):
TAATTTTTAATTTTAG
Found at i:9175 original size:21 final size:21
Alignment explanation
Indices: 9151--9191 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
9141 CCACATAGCC
9151 TCTGCTGTAAATTCTCCCTAT
1 TCTGCTGTAAATTCTCCCTAT
9172 TCTGCTGTAAATTCTCCCTA
1 TCTGCTGTAAATTCTCCCTA
9192 CCCCCAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.29, G:0.10, T:0.41
Consensus pattern (21 bp):
TCTGCTGTAAATTCTCCCTAT
Found at i:9480 original size:2 final size:2
Alignment explanation
Indices: 9473--9502 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9463 AAAAGGAAAA
9473 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
9503 GCAATCCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10820 original size:14 final size:15
Alignment explanation
Indices: 10803--10835 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10793 TTTAAATATA
*
10803 TTATTTAATAATT-T
1 TTATTGAATAATTAT
10817 TTATTGAATAATTAT
1 TTATTGAATAATTAT
10832 TTAT
1 TTAT
10836 ATATAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTATTGAATAATTAT
Found at i:11513 original size:32 final size:33
Alignment explanation
Indices: 11462--11532 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 33
11452 TATTATAAAT
*
11462 TTATATAAATTTTTATATG-TTAATAATTAGTA
1 TTATATAAATTTTGATATGTTTAATAATTAGTA
* * * * *
11494 TTATATATATTTTGGTATGTTTATTTATTTGTA
1 TTATATAAATTTTGATATGTTTAATAATTAGTA
11527 TTATAT
1 TTATAT
11533 TCATATTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 16 0.50
33 16 0.50
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.59
Consensus pattern (33 bp):
TTATATAAATTTTGATATGTTTAATAATTAGTA
Found at i:12564 original size:12 final size:12
Alignment explanation
Indices: 12547--12579 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
12537 TATCATATTC
12547 ATATTATTTTTT
1 ATATTATTTTTT
*
12559 ATATTATGTTTT
1 ATATTATTTTTT
12571 A-ATTATTTT
1 ATATTATTTT
12580 CTATGTTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (12 bp):
ATATTATTTTTT
Found at i:12937 original size:28 final size:27
Alignment explanation
Indices: 12905--12994 Score: 78
Period size: 30 Copynumber: 3.3 Consensus size: 27
12895 TTTATCTTAT
12905 ATTTTATATAAATTTTTTATATAATTAA
1 ATTTTATATAAATTTTTTAT-TAATTAA
* *
12933 ATTTTAACTTTAAATTTATTTATTAAAT-A
1 ATTTT-A-TATAAATTT-TTTATTAATTAA
* *
12962 TTTTTAAATAAA--TTTTATTAATTATA
1 ATTTTATATAAATTTTTTATTAATTA-A
12988 ATTTTAT
1 ATTTTAT
12995 TTAATTAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
24 9 0.18
25 1 0.02
26 6 0.12
27 4 0.08
28 6 0.12
29 6 0.12
30 12 0.24
31 5 0.10
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (27 bp):
ATTTTATATAAATTTTTTATTAATTAA
Found at i:13596 original size:14 final size:13
Alignment explanation
Indices: 13582--13622 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
13572 AATATATATT
13582 TTTAT-ATTAATA
1 TTTATAATTAATA
13594 TTTATAATTAA-A
1 TTTATAATTAATA
*
13606 TTTA-AATAAATA
1 TTTATAATTAATA
13618 TTTAT
1 TTTAT
13623 GTAAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 5 0.20
12 15 0.60
13 5 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTATAATTAATA
Found at i:14136 original size:2 final size:2
Alignment explanation
Indices: 14129--14190 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
14119 AAATCTATTC
14129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14171 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
14191 GTAGACACCT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14793 original size:20 final size:20
Alignment explanation
Indices: 14770--14894 Score: 106
Period size: 20 Copynumber: 5.7 Consensus size: 20
14760 AAGTACCCAG
14770 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
*** *
14790 ATGTATCGATACATGCATGA
1 ATGTATCGATACATTTTTCA
*
14810 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
14830 ATGTATCGATACATTCTGTCTTTTTACCCAA
1 ATGTATCGATACA-------TTTTT---C-A
14861 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
14881 ATGTATCGATACAT
1 ATGTATCGATACAT
14895 CTAGTTAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
20 61 0.71
21 1 0.01
24 5 0.06
27 4 0.05
30 1 0.01
31 14 0.16
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:15986 original size:16 final size:16
Alignment explanation
Indices: 15965--15996 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15955 GCAAATATCA
15965 CAATCTTGGGGTAAAG
1 CAATCTTGGGGTAAAG
15981 CAATCTTGGGGTAAAG
1 CAATCTTGGGGTAAAG
15997 TTGATTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.25
Consensus pattern (16 bp):
CAATCTTGGGGTAAAG
Found at i:17737 original size:13 final size:13
Alignment explanation
Indices: 17719--17744 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17709 TACACACAAG
17719 ATGTATCGATACA
1 ATGTATCGATACA
17732 ATGTATCGATACA
1 ATGTATCGATACA
17745 TCCCAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:17761 original size:33 final size:32
Alignment explanation
Indices: 17701--17764 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
17691 CTTAACTGTT
*
17701 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
17733 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCGATACA
17765 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:23010 original size:52 final size:52
Alignment explanation
Indices: 22940--23060 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
22930 GAAAATTTAT
*
22940 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
22992 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
23044 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
23061 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:23073 original size:52 final size:51
Alignment explanation
Indices: 22940--23080 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
22930 GAAAATTTAT
22940 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
22992 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
23044 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
23081 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:23087 original size:13 final size:13
Alignment explanation
Indices: 23069--23093 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23059 CAAAGATCAG
23069 TGTATCGATACAA
1 TGTATCGATACAA
23082 TGTATCGATACA
1 TGTATCGATACA
23094 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:23176 original size:13 final size:13
Alignment explanation
Indices: 23158--23182 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23148 CAAAAAAATA
23158 TGTATCGATACAT
1 TGTATCGATACAT
23171 TGTATCGATACA
1 TGTATCGATACA
23183 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:23178 original size:33 final size:33
Alignment explanation
Indices: 23136--23202 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
23126 AGTAGCTTAA
23136 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
23169 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
23202 A
1 A
23203 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:23975 original size:49 final size:49
Alignment explanation
Indices: 23922--24553 Score: 874
Period size: 49 Copynumber: 13.0 Consensus size: 49
23912 GGCTAGCGAT
* *
23922 ATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGAC
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
23971 ATTGGACTT--A-A--AA-GTGCCAATGTGCTGATTCAAGGCCAGCTAC
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
*
24014 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * *
24063 ATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
*
24112 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* *
24161 ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
1 ATTGGACTTAAAGAT-G--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
*
24213 ATTGGACTT-AA-A-G-A--TGCCAATGTGCTGAGTCAAGGCCAGCTAC
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * * *
24256 ATTGGACTTCAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * *
24305 ATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGAT
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
*
24354 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* *
24403 ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
1 ATTGGACTTAAAGAT-G--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
*
24455 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
1 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
*
24504 ATTGGACTTAAAGATGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
1 ATTGGACTTAAAGATG---AAGGTGCCAATGTGCTGATTCAAGGCCAGCT
24554 GTATTGGGCT
Statistics
Matches: 526, Mismatches: 36, Indels: 39
0.88 0.06 0.06
Matches are distributed among these distances:
43 73 0.14
44 4 0.01
45 3 0.01
46 3 0.01
47 2 0.00
48 3 0.01
49 319 0.61
50 3 0.01
51 3 0.01
52 113 0.21
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
Found at i:24362 original size:242 final size:243
Alignment explanation
Indices: 23922--24565 Score: 1066
Period size: 242 Copynumber: 2.6 Consensus size: 243
23912 GGCTAGCGAT
* * *
23922 ATTGGACTTAAAGAT---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA-
1 ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
* *
23983 AGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGA
66 AGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGA
* * *
24048 GTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATA
131 TTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATA
24113 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
196 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
24161 ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
* *
24226 A-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATATGCTGA
66 AGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGA
24290 TTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATA
131 TTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATA
24355 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
196 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
24403 ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-
24468 ATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAAGGTGCCAA
64 A-G-A-GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAA
*
24533 TATGCTGATTCAAGGCCAGCTG-TATTGGGCTTA
123 TATGCTGATTCAAGGCCAGC-GATATTGGACTTA
24566 GAGGGGTTGC
Statistics
Matches: 378, Mismatches: 13, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
239 15 0.04
242 273 0.72
243 3 0.01
244 1 0.00
245 1 0.00
246 1 0.00
248 44 0.12
251 39 0.10
252 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (243 bp):
ATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
AGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGA
TTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATA
TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAC
Found at i:24609 original size:33 final size:33
Alignment explanation
Indices: 24570--24632 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
24560 GGCTTAGAGG
24570 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
24603 GGTTGCCACCGACTTGTGTGGGCTTTGGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAA
24633 AGGGTGAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.16, C:0.19, G:0.37, T:0.29
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
Found at i:24681 original size:33 final size:33
Alignment explanation
Indices: 24639--24894 Score: 291
Period size: 33 Copynumber: 7.9 Consensus size: 33
24629 GGAAAGGGTG
* *
24639 AAAGATGCCACGAAGTTGTGGAC-TTAAAAGGAA
1 AAAG-TGCCACGGAGTTGTGGGCTTTAAAAGGAA
* *
24672 CAAGGTGCCACAGAGTTGTGGGCTTTAAAAGGAA
1 -AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
24706 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAA
1 AAAGTGCCACGGAGTTGTGGGCTTT-AAAA-GG-AA
*
24742 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 AA-AGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
24776 AAAGTGCCACGGAGTTGTGGGCTTT--AA--AA
1 AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
* * *
24805 AGAGTGCCACGGAGTTATGGAC-TTAAAAGG--
1 AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
*
24835 ---GTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
24865 AAAGTGCCACGGAGTTGTGGGCTTTGAAAA
1 AAAGTGCCACGGAGTTGTGGGCTTT-AAAA
24895 AGATGCCACT
Statistics
Matches: 193, Mismatches: 13, Indels: 32
0.81 0.05 0.13
Matches are distributed among these distances:
27 17 0.09
28 9 0.05
29 21 0.11
30 2 0.01
31 2 0.01
33 83 0.43
34 25 0.13
35 3 0.02
36 8 0.04
37 23 0.12
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (33 bp):
AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
Found at i:24815 original size:62 final size:58
Alignment explanation
Indices: 24739--24918 Score: 195
Period size: 62 Copynumber: 3.0 Consensus size: 58
24729 TTGAAAAGGG
24739 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT-
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG-----AGTGCCACGGAGTTGTGGGCTTTA
* * *
24801 AAAAAGAGTGCCACGGAGTTATGGAC-TTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGGAGTTGTGGGCTTT--A
* * *
24860 AGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAA-AGATGCCACTGACTTGTGGGCTTT
1 A-AAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAG-TGCCACGGAGTTGTGGGCTTT
24919 TGAAGGGTAA
Statistics
Matches: 102, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
56 22 0.22
59 1 0.01
60 22 0.22
61 10 0.10
62 47 0.46
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.23
Consensus pattern (58 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGGAGTTGTGGGCTTTA
Found at i:24832 original size:27 final size:28
Alignment explanation
Indices: 24740--24918 Score: 182
Period size: 33 Copynumber: 6.0 Consensus size: 28
24730 TGAAAAGGGA
24740 AAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTTT
24768 AAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
1 AAAAG-----AGTGCCACGGAGTTGTGGGCTTT
* *
24801 AAAAAGAGTGCCACGGAGTTATGGAC-TT
1 -AAAAGAGTGCCACGGAGTTGTGGGCTTT
*
24829 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTTT
24857 AAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
1 AAAAG-----AGTGCCACGGAGTTGTGGGCTTT
* *
24890 GAAAA-AGATGCCACTGACTTGTGGGCTTT
1 -AAAAGAG-TGCCACGGAGTTGTGGGCTTT
24919 TGAAGGGTAA
Statistics
Matches: 129, Mismatches: 8, Indels: 27
0.79 0.05 0.16
Matches are distributed among these distances:
27 22 0.17
28 16 0.12
29 37 0.29
33 45 0.35
34 9 0.07
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.23
Consensus pattern (28 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTTT
Found at i:24902 original size:89 final size:89
Alignment explanation
Indices: 24740--24903 Score: 303
Period size: 89 Copynumber: 1.8 Consensus size: 89
24730 TGAAAAGGGA
24740 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAA
24805 AGAGTGCCACGGAGTTATGGACTT
66 AGAGTGCCACGGAGTTATGGACTT
*
24829 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAA
24894 AAGA-TGCCAC
65 AAGAGTGCCAC
24904 TGACTTGTGG
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
89 66 0.90
90 7 0.10
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (89 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAA
AGAGTGCCACGGAGTTATGGACTT
Found at i:26368 original size:1 final size:1
Alignment explanation
Indices: 26362--26454 Score: 69
Period size: 1 Copynumber: 93.0 Consensus size: 1
26352 CGGACCCCTC
* * * * * * * **
26362 TTTTTTTTTTGTTTGTTTTTTTATTGTTTTTTGTTTTTTTTCTTTTGTTTTTTTTTTTTTTTTGG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** **
26427 TTTTTCATTTTTTGGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
26455 GAAGGACGCC
Statistics
Matches: 71, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 71 1.00
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (1 bp):
T
Found at i:26391 original size:22 final size:20
Alignment explanation
Indices: 26362--26455 Score: 86
Period size: 22 Copynumber: 4.6 Consensus size: 20
26352 CGGACCCCTC
26362 TTTT-TTTTTTGTTTGTTTTT
1 TTTTGTTTTTTGTTT-TTTTT
26382 TTATTGTTTTTTGTTTTTTTT
1 TT-TTGTTTTTTGTTTTTTTT
26403 CTTTTG-TTTTT-TTTTTTTT
1 -TTTTGTTTTTTGTTTTTTTT
* **
26422 TTTGGTTTTTCATTTTTTGGTT
1 TTTTGTTTTTTGTTTTTT--TT
*
26444 TTTTTTTTTTTG
1 TTTTGTTTTTTG
26456 AAGGACGCCG
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
18 4 0.07
19 12 0.20
20 13 0.21
21 10 0.16
22 22 0.36
ACGTcount: A:0.02, C:0.02, G:0.11, T:0.85
Consensus pattern (20 bp):
TTTTGTTTTTTGTTTTTTTT
Found at i:26409 original size:32 final size:31
Alignment explanation
Indices: 26363--26454 Score: 107
Period size: 32 Copynumber: 2.9 Consensus size: 31
26353 GGACCCCTCT
26363 TTTTTTTTTGTTTGTTTTTTTATTGTTTTTT-G
1 TTTTTTTTT-TTTGTTTTTTT-TTGTTTTTTGG
*
26395 TTTTTTTTCTTTTGTTTTTTTTTTTTTTTTGG
1 TTTTTTTT-TTTTGTTTTTTTTTGTTTTTTGG
* *
26427 TTTTTCATTTTTTGGTTTTTTTT-TTTTT
1 TTTTT-TTTTTTTGTTTTTTTTTGTTTTT
26455 GAAGGACGCC
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
31 13 0.24
32 38 0.70
33 3 0.06
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (31 bp):
TTTTTTTTTTTTGTTTTTTTTTGTTTTTTGG
Found at i:26422 original size:15 final size:15
Alignment explanation
Indices: 26362--26455 Score: 91
Period size: 15 Copynumber: 6.0 Consensus size: 15
26352 CGGACCCCTC
*
26362 TTTTTTTTTTGTTTG
1 TTTTTTTTTTTTTTG
26377 TTTTTTTATTGTTTTTTG
1 -TTTTTT-TT-TTTTTTG
26395 TTTTTTTTCTTTTGTT-
1 TTTTTTTT-TTTT-TTG
26411 TTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTG
* **
26426 GTTTTTCATTTTTTG
1 TTTTTTTTTTTTTTG
*
26441 GTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTG
26456 AAGGACGCCG
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
14 2 0.03
15 29 0.43
16 20 0.30
17 10 0.15
18 6 0.09
ACGTcount: A:0.02, C:0.02, G:0.11, T:0.85
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:30034 original size:1 final size:1
Alignment explanation
Indices: 30028--30058 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
30018 TGATAAAGGC
30028 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
30059 GATGGAGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:36182 original size:10 final size:10
Alignment explanation
Indices: 36167--36193 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36157 ATGTATCAAG
36167 CAAAAACAAA
1 CAAAAACAAA
36177 CAAAAACAAA
1 CAAAAACAAA
36187 CAAAAAC
1 CAAAAAC
36194 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:40397 original size:52 final size:52
Alignment explanation
Indices: 40327--40447 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
40317 GAAAATTTAT
*
40327 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
40379 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
40431 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
40448 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:40460 original size:52 final size:51
Alignment explanation
Indices: 40327--40467 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
40317 GAAAATTTAT
40327 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
40379 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
40431 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
40468 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:40474 original size:13 final size:13
Alignment explanation
Indices: 40456--40480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40446 CAAAGATCAG
40456 TGTATCGATACAA
1 TGTATCGATACAA
40469 TGTATCGATACA
1 TGTATCGATACA
40481 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:40563 original size:13 final size:13
Alignment explanation
Indices: 40545--40569 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40535 CAAAAAAATA
40545 TGTATCGATACAT
1 TGTATCGATACAT
40558 TGTATCGATACA
1 TGTATCGATACA
40570 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:40565 original size:33 final size:33
Alignment explanation
Indices: 40523--40589 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
40513 AGTAGCTTAA
40523 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
40556 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
40589 A
1 A
40590 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:48534 original size:156 final size:153
Alignment explanation
Indices: 48080--48670 Score: 528
Period size: 156 Copynumber: 3.8 Consensus size: 153
48070 TTAAAACAAC
* * * * *
48080 CATAAATAAGGTAAACCTATCCTAAATACACATCTTTGGCATAAAAGCCTCCTGAT-AGCAACCT
1 CATAAATTAGATAAAACTATCCTAAATACACATCTTTAGCATAAAAGCATCCTGATGA-CAACCT
* * * *
48144 AAGACTCGATTTTAAAAAAATTACGAAAA-----TAGATATACTTTCGACATGAAAA-TATCTCA
65 AAGACTCGATTTTAAAAAAATTATGAAAATGCCCTAGGTATACCTTCGACAT-AAAAGTATCTCG
* * *
48203 GTAACCTTAAAGGACTTAAAAATCAT
129 GTAACCTTAAAAGA-TTTAAAATGAT
* * * * * * * *
48229 CATAAA-TAGGATGAAACTATCCTAAATACTCACCTTTGGCA-AAAA-AATCCCGGTGATAACCT
1 CATAAATTA-GATAAAACTATCCTAAATACACATCTTTAGCATAAAAGCATCCTGATGACAACCT
* * * *
48291 AAAACTCGATTTTAAAAAAAATATATGAAAATGCCCATATGGGTATACCTTCAATATGAAAGTAT
65 AAGACTCGATTTT-AAAAAAAT-TATGAAAATGCCC-TA--GGTATACCTTCGACATAAAAGTAT
*
48356 CTCGGTAACCCTAAAAGATTTAAAATGGAT
125 CTCGGTAACCTTAAAAGATTTAAAAT-GAT
* * * *
48386 CATAAATTAGATAAAACTATCCTAAATGCACATCTTCAACATAAAAGCATCCTGGTGACAACCTA
1 CATAAATTAGATAAAACTATCCTAAATACACATCTTTAGCATAAAAGCATCCTGATGACAACCTA
** *
48451 AGACTTAATTTTAAAAAAATTATGAAAATGCCCTTGGGGTATACCTTCGACATAAAAGTAT-TCT
66 AGACTCGATTTTAAAAAAATTATGAAAATGCCC-T-AGGTATACCTTCGACATAAAAGTATCTC-
48515 GGTAACCTTAAAAGATTTAAATATGAT
128 GGTAACCTTAAAAGATTTAAA-ATGAT
* * * *
48542 CATAAATTGGACT-AACCTATCCTAAATGCACA-CTTTTAGCATAAAAGCAT-CTCAATGACAAC
1 CATAAATTAGA-TAAAACTATCCTAAATACACATC-TTTAGCATAAAAGCATCCT-GATGACAAC
* ** * * *
48604 CTAAGACTCGATTCTAGGAAAATTATGAAAATACGCCTAAGGTATACCTTCGACGTGAAAGTA-C
63 CTAAGACTCGATTTTAAAAAAATTATGAAAATGC-CCT-AGGTATACCTTCGACATAAAAGTATC
48668 TCG
126 TCG
48671 AAGGACATAA
Statistics
Matches: 359, Mismatches: 58, Indels: 44
0.78 0.13 0.10
Matches are distributed among these distances:
147 22 0.06
148 14 0.04
149 40 0.11
155 8 0.02
156 155 0.43
157 82 0.23
158 14 0.04
159 24 0.07
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (153 bp):
CATAAATTAGATAAAACTATCCTAAATACACATCTTTAGCATAAAAGCATCCTGATGACAACCTA
AGACTCGATTTTAAAAAAATTATGAAAATGCCCTAGGTATACCTTCGACATAAAAGTATCTCGGT
AACCTTAAAAGATTTAAAATGAT
Found at i:49637 original size:30 final size:30
Alignment explanation
Indices: 49592--49648 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
49582 GAAGTTGAAA
*
49592 TAAAATTTTTCAAAATTTACAAATTAGCCCT
1 TAAAATTTTTCAAAA-TTACAAAGTAGCCCT
*
49623 TAAACTTTTT-AAAATTACAAAGTAGC
1 TAAAATTTTTCAAAATTACAAAGTAGC
49649 TTTTATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 11 0.46
30 4 0.17
31 9 0.38
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (30 bp):
TAAAATTTTTCAAAATTACAAAGTAGCCCT
Found at i:51586 original size:13 final size:13
Alignment explanation
Indices: 51568--51593 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51558 TACACAAAGT
51568 ATGTATCGATACA
1 ATGTATCGATACA
51581 ATGTATCGATACA
1 ATGTATCGATACA
51594 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:51591 original size:32 final size:33
Alignment explanation
Indices: 51550--51613 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
51540 TAGCCAAACT
**
51550 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
51582 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
51614 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:51944 original size:17 final size:17
Alignment explanation
Indices: 51922--51955 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51912 CATTTTTCTA
51922 AGCTCTTTGTATTTGAT
1 AGCTCTTTGTATTTGAT
51939 AGCTCTTTGTATTTGAT
1 AGCTCTTTGTATTTGAT
51956 CTCAAGCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53
Consensus pattern (17 bp):
AGCTCTTTGTATTTGAT
Found at i:52722 original size:154 final size:153
Alignment explanation
Indices: 52380--52723 Score: 429
Period size: 154 Copynumber: 2.2 Consensus size: 153
52370 TTGTAATTAT
* * * ** *
52380 GGAGTAGAAAACACTGTATCTTAGTAATAGAAAATCTTTTAAAACTCATAAAATAAATTAAGATT
1 GGAGTAGAAAACTCTGTATTTTAGTAATAAAAAAAATTTTAAAACTCATAAAATAAATGAAGATT
* * *
52445 TTCTAAACTAATTTAATATGAATTAAAAATAATATTTGAATAATTTTAAAAATTATAAACTTAGA
66 TTCTAAACTAATTTAATATGAATTAAAAACAATATTTGAAGAATTTTAAAAATTATAAACTTAAA
*
52510 AAAATCTTATCGAAAAAATTTAT
131 AAAATCTTATCGAAAAAATTTAC
* * * * * * *
52533 AGAGTAGAAAACTCTGTATTTCAGTAACAAGAAAAATTTTAAGACTTATAAAATAAAATGAA-TT
1 GGAGTAGAAAACTCTGTATTTTAGTAATAAAAAAAATTTTAAAACTCATAAAAT-AAATGAAGAT
* * * * *
52597 TTTTTAAACTGATTTAATATGAATTAAGCAACAATATTTGAAGGATTTTGAAAATTATAAACTTA
65 TTTCTAAACTAATTTAATATGAATTAA-AAACAATATTTGAAGAATTTTAAAAATTATAAACTTA
*
52662 AAAAAATCTTATCGAAAAGATTTAC
129 AAAAAATCTTATCGAAAAAATTTAC
* **
52687 GGAGTAGAAAACTCCGTATTTTAAAAATAAAAAAAAT
1 GGAGTAGAAAACTCTGTATTTTAGTAATAAAAAAAAT
52724 CTAAAAGAAA
Statistics
Matches: 159, Mismatches: 30, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
153 69 0.43
154 90 0.57
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (153 bp):
GGAGTAGAAAACTCTGTATTTTAGTAATAAAAAAAATTTTAAAACTCATAAAATAAATGAAGATT
TTCTAAACTAATTTAATATGAATTAAAAACAATATTTGAAGAATTTTAAAAATTATAAACTTAAA
AAAATCTTATCGAAAAAATTTAC
Found at i:56121 original size:19 final size:18
Alignment explanation
Indices: 56097--56132 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
56087 TAATTTTCAT
*
56097 AAATATTAAATAATTTATA
1 AAATATAAAAT-ATTTATA
56116 AAATATAAAATATTTAT
1 AAATATAAAATATTTAT
56133 TTACATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATATAAAATATTTATA
Found at i:56900 original size:20 final size:19
Alignment explanation
Indices: 56871--56913 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 19
56861 AAATTGATAA
*
56871 TTTACTTTAAGATATAAATAT
1 TTTACTTTAA-ATA-AAAAAT
56892 TTTAC-TTAAATAAAAAAT
1 TTTACTTTAAATAAAAAAT
56910 TTTA
1 TTTA
56914 TATCTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 9 0.43
19 3 0.14
20 4 0.19
21 5 0.24
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (19 bp):
TTTACTTTAAATAAAAAAT
Found at i:56936 original size:14 final size:14
Alignment explanation
Indices: 56901--56937 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
56891 TTTTACTTAA
56901 ATAAAAAATTTTAT
1 ATAAAAAATTTTAT
**
56915 ATCTAAAATTTTAT
1 ATAAAAAATTTTAT
56929 ATAAAAAAT
1 ATAAAAAAT
56938 ACTTAAATGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAAAAATTTTAT
Found at i:56954 original size:17 final size:16
Alignment explanation
Indices: 56932--56968 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
56922 ATTTTATATA
56932 AAAAATACTTAAATGTT
1 AAAAATACTTAAAT-TT
*
56949 AAAAATATTTAAATTT
1 AAAAATACTTAAATTT
56965 AAAA
1 AAAA
56969 TAATTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (16 bp):
AAAAATACTTAAATTT
Found at i:56966 original size:16 final size:16
Alignment explanation
Indices: 56932--57000 Score: 72
Period size: 16 Copynumber: 4.2 Consensus size: 16
56922 ATTTTATATA
*
56932 AAAAATACTTAAATGTT
1 AAAAATATTTAAAT-TT
56949 AAAAATATTTAAATTT
1 AAAAATATTTAAATTT
56965 -AAAATAATTTATAA-TT
1 AAAAAT-ATTTA-AATTT
56981 AATAAA-ATTTAAATTT
1 AA-AAATATTTAAATTT
56997 AAAA
1 AAAA
57001 TGATCTAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
15 9 0.20
16 18 0.39
17 16 0.35
18 3 0.07
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (16 bp):
AAAAATATTTAAATTT
Found at i:64750 original size:116 final size:116
Alignment explanation
Indices: 64562--64793 Score: 340
Period size: 116 Copynumber: 2.0 Consensus size: 116
64552 ATAGCTTAGG
* * * *
64562 CCTTACATTTATTTCCAACTGTGTTAGATAAAATTAAACTTACGAACTCATAAACTAGTGAAGTG
1 CCTTACATTTATTTCCAACTGTGTTAGATAAAATTAAACTTAAGAACTCATAAACTACTAAAGTC
* * *
64627 AACCCAGTCCAACCCTTTGTGAATCAAGTAACGCCATTTCCAAATTTGCCT
66 AACCCAGTCCAACCCTTGGTGAATCAAGTAAAGCAATTTCCAAATTTGCCT
* * * * *
64678 CCTTGCATTTA-TTCCTAACTGTGTTTGGTAAGATTGAACTTAAGAACTCATAAACTACTAAAGT
1 CCTTACATTTATTTCC-AACTGTGTTAGATAAAATTAAACTTAAGAACTCATAAACTACTAAAGT
64742 CAACCCAGTCCAACCCTTGGTGAATCAAGTAAAGCAATTTCCAAATTTGCCT
65 CAACCCAGTCCAACCCTTGGTGAATCAAGTAAAGCAATTTCCAAATTTGCCT
64794 TTCTTCAGGG
Statistics
Matches: 103, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
115 4 0.04
116 99 0.96
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (116 bp):
CCTTACATTTATTTCCAACTGTGTTAGATAAAATTAAACTTAAGAACTCATAAACTACTAAAGTC
AACCCAGTCCAACCCTTGGTGAATCAAGTAAAGCAATTTCCAAATTTGCCT
Found at i:65032 original size:17 final size:18
Alignment explanation
Indices: 65006--65051 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
64996 TTTTTAATTA
*
65006 TATAATTTATATTATCTT
1 TATAATTTATATTATATT
65024 TAT-ATTTATA-TATATT
1 TATAATTTATATTATATT
65040 TATAATTTATAT
1 TATAATTTATAT
65052 CAAATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 8 0.32
17 14 0.56
18 3 0.12
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TATAATTTATATTATATT
Found at i:66690 original size:6 final size:6
Alignment explanation
Indices: 66679--66713 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
66669 ACGTGATCGC
* *
66679 TTCTCG TTCTCG TTCTCG TTCTCC TTCTCC TTCTC
1 TTCTCG TTCTCG TTCTCG TTCTCG TTCTCG TTCTC
66714 CTTAACCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.40, G:0.09, T:0.51
Consensus pattern (6 bp):
TTCTCG
Found at i:66696 original size:12 final size:12
Alignment explanation
Indices: 66678--66716 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
66668 CACGTGATCG
66678 CTTCTCGTTCTC
1 CTTCTCGTTCTC
*
66690 GTTCTCGTTCTC
1 CTTCTCGTTCTC
*
66702 CTTCTCCTTCTC
1 CTTCTCGTTCTC
66714 CTT
1 CTT
66717 AACCTTAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.00, C:0.41, G:0.08, T:0.51
Consensus pattern (12 bp):
CTTCTCGTTCTC
Found at i:66714 original size:6 final size:6
Alignment explanation
Indices: 66678--66716 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
66668 CACGTGATCG
* * *
66678 CTTCTC GTTCTC GTTCTC GTTCTC CTTCTC CTTCTC CTT
1 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTT
66717 AACCTTAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.41, G:0.08, T:0.51
Consensus pattern (6 bp):
CTTCTC
Found at i:67449 original size:34 final size:36
Alignment explanation
Indices: 67411--67487 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 36
67401 TGAAAATTGT
*
67411 AATTAATACT-TTCTTTATAAATTTTA-TTTT-ATAA
1 AATTAATA-TATTCTTTATAAAATTTATTTTTAATAA
*
67445 AATTAA-ATATTCTTTTTAAAATTTATTTTTAATAA
1 AATTAATATATTCTTTATAAAATTTATTTTTAATAA
*
67480 ATTTAATA
1 AATTAATA
67488 AAGTAAGTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 1 0.03
33 15 0.42
34 10 0.28
35 9 0.25
36 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (36 bp):
AATTAATATATTCTTTATAAAATTTATTTTTAATAA
Found at i:68117 original size:12 final size:12
Alignment explanation
Indices: 68100--68130 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
68090 ATGGATCCTA
*
68100 AATTAATATATG
1 AATTAATATACG
68112 AATTAATATACG
1 AATTAATATACG
68124 AATTAAT
1 AATTAAT
68131 CCTTTAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (12 bp):
AATTAATATACG
Found at i:69381 original size:16 final size:16
Alignment explanation
Indices: 69362--69402 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
69352 GCTCGAATCT
69362 GAAAGAACCAAAACCC
1 GAAAGAACCAAAACCC
**
69378 GAAAGAACCTGAACCC
1 GAAAGAACCAAAACCC
*
69394 GAGAGAACC
1 GAAAGAACC
69403 CGAACCCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.29, G:0.20, T:0.02
Consensus pattern (16 bp):
GAAAGAACCAAAACCC
Found at i:69407 original size:16 final size:16
Alignment explanation
Indices: 69373--69413 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
69363 AAAGAACCAA
* *
69373 AACCCGAAAGAACCTG
1 AACCCGAGAGAACCCG
69389 AACCCGAGAGAACCCG
1 AACCCGAGAGAACCCG
69405 AACCCGAGA
1 AACCCGAGA
69414 TTGACCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.41, C:0.34, G:0.22, T:0.02
Consensus pattern (16 bp):
AACCCGAGAGAACCCG
Found at i:71687 original size:16 final size:16
Alignment explanation
Indices: 71668--71698 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71658 AACTTAAAAT
71668 AGCCCGAACCCGAGAC
1 AGCCCGAACCCGAGAC
*
71684 AGCCCTAACCCGAGA
1 AGCCCGAACCCGAGA
71699 AAACCTGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.42, G:0.23, T:0.03
Consensus pattern (16 bp):
AGCCCGAACCCGAGAC
Found at i:72766 original size:11 final size:10
Alignment explanation
Indices: 72750--72801 Score: 61
Period size: 11 Copynumber: 4.9 Consensus size: 10
72740 TTAGTTAAGA
72750 TTAAATAGTTT
1 TTAAATA-TTT
72761 TTAAATATTTT
1 TTAAATA-TTT
72772 ATTAAATATATT
1 -TTAAATAT-TT
72784 TTAAAT-TTT
1 TTAAATATTT
72793 TTAAATATT
1 TTAAATATT
72802 AATTCAGTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
9 8 0.22
10 3 0.08
11 17 0.46
12 9 0.24
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (10 bp):
TTAAATATTT
Found at i:72776 original size:23 final size:23
Alignment explanation
Indices: 72749--72795 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
72739 TTTAGTTAAG
72749 ATTAAATAGT-TTTTAAATATTTT
1 ATTAAATA-TATTTTAAATATTTT
*
72772 ATTAAATATATTTTAAATTTTTT
1 ATTAAATATATTTTAAATATTTT
72795 A
1 A
72796 AATATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
ATTAAATATATTTTAAATATTTT
Found at i:73197 original size:16 final size:16
Alignment explanation
Indices: 73176--73241 Score: 73
Period size: 16 Copynumber: 4.1 Consensus size: 16
73166 CGAACTCGAA
*
73176 CCCGAACCTGAATAAG
1 CCCGAACCCGAATAAG
73192 CCCGAACCCGAATAAG
1 CCCGAACCCGAATAAG
*
73208 CTCGAATCCC-AA-AATG
1 CCCGAA-CCCGAATAA-G
*
73224 CTCGAACCCGAATAAG
1 CCCGAACCCGAATAAG
73240 CC
1 CC
73242 TGAATCCCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
15 5 0.12
16 33 0.77
17 5 0.12
ACGTcount: A:0.36, C:0.35, G:0.17, T:0.12
Consensus pattern (16 bp):
CCCGAACCCGAATAAG
Found at i:77721 original size:29 final size:29
Alignment explanation
Indices: 77683--77742 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
77673 CTAAGGTCAC
* *
77683 TTTAGCATATTTTTCATACAT-TAAAGCTA
1 TTTAGAATATTTTGCATA-ATCTAAAGCTA
*
77712 TTTAGAATATTTTGCATAATCTAAAGTTA
1 TTTAGAATATTTTGCATAATCTAAAGCTA
77741 TT
1 TT
77743 CTAAAGATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 25 0.93
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (29 bp):
TTTAGAATATTTTGCATAATCTAAAGCTA
Found at i:83766 original size:17 final size:18
Alignment explanation
Indices: 83744--83780 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
83734 GACCTAGCAA
*
83744 TTTTTAG-CTTTTTCTCT
1 TTTTTAGTCTTTTTATCT
83761 TTTTTAGTCTTTTTATCT
1 TTTTTAGTCTTTTTATCT
83779 TT
1 TT
83781 ATCGTAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.08, C:0.14, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTTTAGTCTTTTTATCT
Found at i:93790 original size:152 final size:152
Alignment explanation
Indices: 93514--93819 Score: 585
Period size: 152 Copynumber: 2.0 Consensus size: 152
93504 ATACATCAGG
93514 TAAACTTAGGGTTTCTTTCAATTTTAACGATCAAAGCAAGTACTGACCACTAAAAGATAGTTTTC
1 TAAACTTAGGGTTTCTTTCAATTTTAACGATCAAAGCAAGTACTGACCACTAAAAGATAGTTTTC
93579 TTCTGCCTATTTGTGAAGTTCATGCCATGAAGAAGGATTGTATCCATGTGTAGTCAAGAACTTGT
66 TTCTGCCTATTTGTGAAGTTCATGCCATGAAGAAGGATTGTATCCATGTGTAGTCAAGAACTTGT
93644 AGTGTCATAGGCCTACTATTCC
131 AGTGTCATAGGCCTACTATTCC
93666 TAAACTTAGGGTTTCTTTCAATTTTAACGATCAAAGCAAGTACTGACCACTAAAAGATAGTTTTC
1 TAAACTTAGGGTTTCTTTCAATTTTAACGATCAAAGCAAGTACTGACCACTAAAAGATAGTTTTC
* * *
93731 TTCTGCCTATTTGTGAAGTTCATGCCGTGAAGTAGGATTGTGTCCATGTGTAGTCAAGAACTTGT
66 TTCTGCCTATTTGTGAAGTTCATGCCATGAAGAAGGATTGTATCCATGTGTAGTCAAGAACTTGT
93796 AGTGTCATAGGCCTACTATTCC
131 AGTGTCATAGGCCTACTATTCC
93818 TA
1 TA
93820 CATGTGAGGG
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
152 151 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (152 bp):
TAAACTTAGGGTTTCTTTCAATTTTAACGATCAAAGCAAGTACTGACCACTAAAAGATAGTTTTC
TTCTGCCTATTTGTGAAGTTCATGCCATGAAGAAGGATTGTATCCATGTGTAGTCAAGAACTTGT
AGTGTCATAGGCCTACTATTCC
Found at i:93952 original size:64 final size:66
Alignment explanation
Indices: 93843--93970 Score: 181
Period size: 64 Copynumber: 2.0 Consensus size: 66
93833 ATGACGGTTG
*
93843 TGGTAAAAATAAATCTCATAATGATTAAGTTTGGGATCTCTTGGGA-CCTTTAATATGATTGAGA
1 TGGTAAAAATAAATCTCATAATGATTAAGTTTGGGATCTCATGGGATCCTTTAATATGATTGAGA
93907 C
66 C
* * * *
93908 TGGT-AAAATGAATTTCATAATGATTAAGTTTGGGAT-TGCATGGGATTCTTTAATATGGTTGAG
1 TGGTAAAAATAAATCTCATAATGATTAAGTTTGGGATCT-CATGGGATCCTTTAATATGATTGAG
93971 GCCTCTCCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
63 1 0.02
64 36 0.64
65 19 0.34
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.38
Consensus pattern (66 bp):
TGGTAAAAATAAATCTCATAATGATTAAGTTTGGGATCTCATGGGATCCTTTAATATGATTGAGA
C
Found at i:104189 original size:30 final size:30
Alignment explanation
Indices: 104111--104190 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 30
104101 TATATTGCAT
** *
104111 CCAAATAAGTTCTTATCCTTTAATTTGTAC
1 CCAAATAAGCACTTAACCTTTAATTTGTAC
* * *
104141 CCAAATAAGCAGTGAACCTTTAATTTGTAT
1 CCAAATAAGCACTTAACCTTTAATTTGTAC
* * *
104171 CTACATAAGCCCTTAACCTT
1 CCAAATAAGCACTTAACCTT
104191 CCCAAATAAG
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.36
Consensus pattern (30 bp):
CCAAATAAGCACTTAACCTTTAATTTGTAC
Found at i:105027 original size:3 final size:3
Alignment explanation
Indices: 105019--105048 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
105009 ACACTTTCCC
105019 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
105049 GCTCATTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:112478 original size:18 final size:18
Alignment explanation
Indices: 112439--112478 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
112429 ATATTTATAT
*
112439 ATAAAATTAATTTGTTAT
1 ATAAAATTAATTTGTTAA
*
112457 ATAAAATTAATTTTTTAA
1 ATAAAATTAATTTGTTAA
112475 ATAA
1 ATAA
112479 TTTATTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
ATAAAATTAATTTGTTAA
Found at i:112662 original size:12 final size:11
Alignment explanation
Indices: 112624--112667 Score: 56
Period size: 12 Copynumber: 4.1 Consensus size: 11
112614 TAACTGGATT
112624 AATATTTAAAA
1 AATATTTAAAA
112635 AAT-TTT-AAA
1 AATATTTAAAA
*
112644 TATATTTAATAA
1 AATATTTAA-AA
112656 AATATTTAAAA
1 AATATTTAAAA
112667 A
1 A
112668 CTCATTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
9 5 0.18
10 6 0.21
11 7 0.25
12 10 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AATATTTAAAA
Found at i:112663 original size:22 final size:20
Alignment explanation
Indices: 112625--112665 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 20
112615 AACTGGATTA
112625 ATATTTAAAAAATTTTAAAT
1 ATATTTAAAAAATTTTAAAT
112645 ATATTTAATAAAATATTTAAA
1 ATATTTAA-AAAAT-TTTAAA
112666 AACTCATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 5 0.26
22 6 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATTTAAAAAATTTTAAAT
Found at i:114454 original size:3 final size:3
Alignment explanation
Indices: 114446--114485 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
114436 TGCCTAGACG
114446 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
114486 AGTTTGTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:114814 original size:3 final size:3
Alignment explanation
Indices: 114801--114832 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
114791 TCTATCTTTC
*
114801 CTT CCT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
114833 CTTTTTCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:115671 original size:21 final size:18
Alignment explanation
Indices: 115645--115691 Score: 51
Period size: 21 Copynumber: 2.5 Consensus size: 18
115635 TTAATTAGGT
115645 TTAAAAAATTATATTAATAAA
1 TTAAAAAATTA-ATT--TAAA
*
115666 TTAAAATATTAATTTAAA
1 TTAAAAAATTAATTTAAA
115684 -TAAAAAAT
1 TTAAAAAAT
115692 AAATAAGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
20 3 0.12
21 10 0.42
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAAAAAATTAATTTAAA
Found at i:115769 original size:14 final size:15
Alignment explanation
Indices: 115738--115768 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
115728 AATAATATTT
115738 AATTAAGTTTAAAAA
1 AATTAAGTTTAAAAA
115753 AATTAAGTTTAAAAA
1 AATTAAGTTTAAAAA
115768 A
1 A
115769 TAATCAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
AATTAAGTTTAAAAA
Found at i:116245 original size:22 final size:22
Alignment explanation
Indices: 116160--116249 Score: 82
Period size: 22 Copynumber: 4.1 Consensus size: 22
116150 TTAAATAAAG
116160 ATATT-TTTTTAATTTT-TTAA
1 ATATTATTTTTAATTTTATTAA
116180 ATATTATTTTTAA-TTTATTAA
1 ATATTATTTTTAATTTTATTAA
* * *
116201 TGTAATT-TTTTAAAATTTAATTAA
1 -AT-ATTATTTT-TAATTTTATTAA
116225 ATATTAGTTTTT-ATTTTATTAA
1 ATATTA-TTTTTAATTTTATTAA
116247 ATA
1 ATA
116250 ATAATAATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
20 8 0.14
21 11 0.20
22 20 0.36
23 6 0.11
24 11 0.20
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATTATTTTTAATTTTATTAA
Found at i:116270 original size:28 final size:28
Alignment explanation
Indices: 116238--116308 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
116228 TTAGTTTTTA
116238 TTTTATTAAATAATAATAATAAATATTT
1 TTTTATTAAATAATAATAATAAATATTT
** *
116266 TTTTAAAAAAT-ATAATAATTAATATTT
1 TTTTATTAAATAATAATAATAAATATTT
116293 TACTTTATTAATATAA
1 T--TTTATTAA-ATAA
116309 ATTTTTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
27 16 0.47
28 9 0.26
29 6 0.18
30 2 0.06
31 1 0.03
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
TTTTATTAAATAATAATAATAAATATTT
Found at i:116293 original size:24 final size:25
Alignment explanation
Indices: 116243--116294 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
116233 TTTTATTTTA
* * *
116243 TTAAATAATAATAATAAATATTTTT
1 TTAAAAAATAATAATAAATAATATT
*
116268 TTAAAAAAT-ATAATAATTAATATT
1 TTAAAAAATAATAATAAATAATATT
116292 TTA
1 TTA
116295 CTTTATTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAAAAAATAATAATAAATAATATT
Found at i:116322 original size:23 final size:22
Alignment explanation
Indices: 116285--116348 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 22
116275 ATATAATAAT
* *
116285 TAATATTTTACTTTATT-AATA
1 TAATTTTTTAATTTATTAAATA
116306 TAAATTTTTTAAATTTAATTAAATA
1 T-AATTTTTT-AATTT-ATTAAATA
* *
116331 TTATTTTTTATTTTATTA
1 TAATTTTTTAATTTATTA
116349 GAAATTATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
21 1 0.03
22 11 0.31
23 8 0.23
24 10 0.29
25 5 0.14
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TAATTTTTTAATTTATTAAATA
Found at i:116343 original size:22 final size:23
Alignment explanation
Indices: 116309--116356 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
116299 ATTAATATAA
116309 ATTTTTTAAATTTAATTA-AATATT
1 ATTTTTT-AATTTAATTAGAA-ATT
*
116333 ATTTTTT-ATTTTATTAGAAATT
1 ATTTTTTAATTTAATTAGAAATT
116355 AT
1 AT
116357 AATAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 13 0.59
23 2 0.09
24 7 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
ATTTTTTAATTTAATTAGAAATT
Found at i:116373 original size:103 final size:103
Alignment explanation
Indices: 116187--116373 Score: 281
Period size: 103 Copynumber: 1.8 Consensus size: 103
116177 TAAATATTAT
*
116187 TTTTAATTTATTAATGTAATTTTTTAAAATTTAATTAAATATTAGTTTTTATTTTATTAAATAAT
1 TTTTAATTTATTAATATAATTTTTTAAAATTTAATTAAATATTAGTTTTTATTTTATTAAATAAT
*
116252 AATAATAAATATTTTTTTAAAAAATATAATAATTAATA
66 AATAATAAATATGTTTTTAAAAAATATAATAATTAATA
* *
116290 TTTTACTTTATTAATATAAATTTTTT-AAATTTAATTAAATATTATTTTTTATTTTATTAGAAAT
1 TTTTAATTTATTAATAT-AATTTTTTAAAATTTAATTAAATATTAGTTTTTATTTTATT--AAAT
*
116354 TATAATAA-AAA-ATGTTTTTA
63 AATAATAATAAATATGTTTTTA
116374 TTTTTTATTT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
103 54 0.71
104 11 0.14
105 11 0.14
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (103 bp):
TTTTAATTTATTAATATAATTTTTTAAAATTTAATTAAATATTAGTTTTTATTTTATTAAATAAT
AATAATAAATATGTTTTTAAAAAATATAATAATTAATA
Found at i:116399 original size:131 final size:127
Alignment explanation
Indices: 116265--116591 Score: 497
Period size: 130 Copynumber: 2.6 Consensus size: 127
116255 AATAAATATT
*
116265 TTTTTAAAAAATATAATAATTAATATTTTACTTTATTAATATAAATTTTTTAAATTTAATTAAAT
1 TTTTTAAAAAATATAATAATTAATATTTTAATTTATTAATATAAATTTTTTAAATTTAATTAAAT
* *
116330 ATTATTTTTTATTTTATTAGAAATTATAATAAAAAA-TGTTTTTATTTTTTATTTTAAAATTTTT
66 ATTATTTTTTATTTTATTA-AAA-AATAATAAAAAATTCTTTTTATTTTTTA-TTT-AAATTTTT
116394 A
127 A
116395 TTTTTATAAAAATATAATAATTAATATTTTAATTTATTAATAT-AATTTTTTAAATTTAATTAAA
1 TTTTTA-AAAAATATAATAATTAATATTTTAATTTATTAATATAAATTTTTTAAATTTAATTAAA
116459 TATTATTTTTTATTTTATTAAAAAATAATAAAAAATTCTTTTTATTTTTTATTTAAATTTTTA
65 TATTATTTTTTATTTTATTAAAAAATAATAAAAAATTCTTTTTATTTTTTATTTAAATTTTTA
* *
116522 -TTTT--AAAA-A-AATAATTAATATTTTAATTTATTAATGTAAATTTTTTTAAATTTAATTACA
1 TTTTTAAAAAATATAATAATTAATATTTTAATTTATTAATATAAA-TTTTTTAAATTTAATTAAA
*
116582 TAATATTTTT
65 TATTATTTTT
116592 AAAAAATAAT
Statistics
Matches: 187, Mismatches: 6, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
121 27 0.14
122 3 0.02
123 31 0.17
126 4 0.02
127 9 0.05
128 14 0.07
129 17 0.09
130 47 0.25
131 35 0.19
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (127 bp):
TTTTTAAAAAATATAATAATTAATATTTTAATTTATTAATATAAATTTTTTAAATTTAATTAAAT
ATTATTTTTTATTTTATTAAAAAATAATAAAAAATTCTTTTTATTTTTTATTTAAATTTTTA
Found at i:116466 original size:24 final size:22
Alignment explanation
Indices: 116412--116479 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 22
116402 AAAAATATAA
*
116412 TAAT-TAATATTTT-AATTTAT
1 TAATATAATTTTTTAAATTTAT
116432 TAATATAATTTTTTAAATTTAAT
1 TAATATAATTTTTTAAATTT-AT
* *
116455 TAAATATTATTTTTT-ATTTTAT
1 T-AATATAATTTTTTAAATTTAT
116477 TAA
1 TAA
116480 AAAATAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
20 4 0.10
21 10 0.24
22 8 0.20
23 7 0.17
24 12 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TAATATAATTTTTTAAATTTAT
Found at i:116643 original size:64 final size:66
Alignment explanation
Indices: 116522--116643 Score: 171
Period size: 64 Copynumber: 1.9 Consensus size: 66
116512 TAAATTTTTA
* *
116522 TTTTAAAAAAATAATTAATATTTTAATTTATTAATGTAAATTTTTTTAAATTTAATTACATAATA
1 TTTTAAAAAAATAATTAATATATTAATTTATTAATGTAAATATTTTTAAATTTAATTACATAATA
116587 T
66 T
*
116588 TTTTAAAAAATAATAATTAATATATT-A-TTATTTAT-TAAA-ATTTTTAAATTTAATTA
1 TTTT-AAAAA-AATAATTAATATATTAATTTATTAATGTAAATATTTTTAAATTTAATTA
116644 ATTTATAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
64 16 0.31
65 4 0.08
66 11 0.22
67 6 0.12
68 14 0.27
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.52
Consensus pattern (66 bp):
TTTTAAAAAAATAATTAATATATTAATTTATTAATGTAAATATTTTTAAATTTAATTACATAATA
T
Found at i:116789 original size:23 final size:25
Alignment explanation
Indices: 116743--116789 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
116733 AAGATTTTAA
116743 AAAATATTTTCTTAAAAATCTATTT
1 AAAATATTTTCTTAAAAATCTATTT
116768 AAAAT-TTTT-TTAGAAAAT-TATT
1 AAAATATTTTCTTA-AAAATCTATT
116790 ATTTAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 7 0.33
24 9 0.43
25 5 0.24
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (25 bp):
AAAATATTTTCTTAAAAATCTATTT
Found at i:117746 original size:8 final size:8
Alignment explanation
Indices: 117699--117754 Score: 60
Period size: 8 Copynumber: 6.9 Consensus size: 8
117689 TTTTTATTTT
117699 TTATTAAA
1 TTATTAAA
*
117707 TTAATAAA
1 TTATTAAA
117715 TTATT-AA
1 TTATTAAA
*
117722 TTATTTATA
1 TTA-TTAAA
*
117731 TCATTAAA
1 TTATTAAA
117739 TTATTAAA
1 TTATTAAA
117747 TTAATTAA
1 TT-ATTAA
117755 TTCAAGGTAC
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
7 5 0.13
8 26 0.67
9 8 0.21
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (8 bp):
TTATTAAA
Found at i:118528 original size:23 final size:23
Alignment explanation
Indices: 118444--118545 Score: 93
Period size: 23 Copynumber: 4.4 Consensus size: 23
118434 TTTTGATTAT
* * *
118444 TTTATTTATTATTTATGAATAAA
1 TTTATTTAATATTTATAAACAAA
*
118467 -TT-TTTAATTATTTATAAACACA
1 TTTATTTAA-TATTTATAAACAAA
**
118489 TTTGA-TTATATATTTATAAACATG
1 TTT-ATTTA-ATATTTATAAACAAA
*
118513 TTTATTTAATATTTATAAATAAA
1 TTTATTTAATATTTATAAACAAA
118536 TTTATTTAAT
1 TTTATTTAAT
118546 TTAAATGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
21 4 0.06
22 13 0.20
23 25 0.39
24 21 0.33
25 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (23 bp):
TTTATTTAATATTTATAAACAAA
Found at i:118585 original size:41 final size:42
Alignment explanation
Indices: 118539--118618 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
118529 AAATAAATTT
*
118539 ATTTAA-TTTAAATGAATTAAATTTAAAC-TAAGTTTAAACAC
1 ATTTAATTTTAAATGAACT-AATTTAAACGTAAGTTTAAACAC
* *
118580 ATTTAATTTTAAATGAGCTAATTTAAACGTAATTTTAAA
1 ATTTAATTTTAAATGAACTAATTTAAACGTAAGTTTAAA
118619 AATTTTTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 15 0.44
42 19 0.56
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.41
Consensus pattern (42 bp):
ATTTAATTTTAAATGAACTAATTTAAACGTAAGTTTAAACAC
Found at i:123776 original size:4 final size:4
Alignment explanation
Indices: 123767--123793 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
123757 GAGTTCAAAA
123767 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
123794 AATTAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:123854 original size:2 final size:2
Alignment explanation
Indices: 123838--123871 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
123828 AATGTACTTA
*
123838 AT AT -T AT AT AA AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
123872 ATACTGCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:129638 original size:29 final size:29
Alignment explanation
Indices: 129601--129656 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
129591 TACAATAAAA
*
129601 AAATATTTTAATTTTTATATTATTAAATT
1 AAATATTTTAATATTTATATTATTAAATT
*
129630 AAATATTTTAATATTTATATTTTTAAA
1 AAATATTTTAATATTTATATTATTAAA
129657 ATTATAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
AAATATTTTAATATTTATATTATTAAATT
Found at i:129653 original size:15 final size:15
Alignment explanation
Indices: 129606--129655 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
129596 TAAAAAAATA
*
129606 TTTTAATTTTTATAT
1 TTTTAATATTTATAT
* *
129621 TATTAA-A-TTAAAT
1 TTTTAATATTTATAT
129634 ATTTTAATATTTATAT
1 -TTTTAATATTTATAT
129650 TTTTAA
1 TTTTAA
129656 AATTATAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 12 0.44
16 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAATATTTATAT
Found at i:130068 original size:23 final size:22
Alignment explanation
Indices: 130041--130083 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
130031 TCTTTATTTT
130041 TTATAAA-TAAATAATAATTTATA
1 TTATAAATTAAAT--TAATTTATA
130064 TTATAAATTAAATTAATTTA
1 TTATAAATTAAATTAATTTA
130084 AAAAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 7 0.37
24 5 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TTATAAATTAAATTAATTTATA
Found at i:130554 original size:12 final size:12
Alignment explanation
Indices: 130537--130570 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
130527 CTCTTCCTTG
*
130537 CTTTCCCTTTTC
1 CTTTCCCATTTC
130549 CTTTCCCATTTC
1 CTTTCCCATTTC
*
130561 CATTCCCATT
1 CTTTCCCATT
130571 CCCATTGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.00, T:0.50
Consensus pattern (12 bp):
CTTTCCCATTTC
Found at i:134949 original size:2 final size:2
Alignment explanation
Indices: 134939--134973 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
134929 TATATTGACA
* *
134939 AT AT GT AT AT AT AT AT AT AC AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
134974 CGAACAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:136240 original size:5 final size:6
Alignment explanation
Indices: 136223--136247 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
136213 ATTCATGTGT
136223 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
136248 AGTGGTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:136870 original size:20 final size:20
Alignment explanation
Indices: 136837--136874 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
136827 TTTTTCCCAA
*
136837 AAAATTAAAGAAATTAATAGT
1 AAAATTAAA-AAAATAATAGT
136858 AAAA-TAAAAAAATAATA
1 AAAATTAAAAAAATAATA
136875 ATTAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 8 0.50
20 4 0.25
21 4 0.25
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (20 bp):
AAAATTAAAAAAATAATAGT
Found at i:142217 original size:14 final size:15
Alignment explanation
Indices: 142198--142226 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
142188 AGCTGCCTGT
142198 AAAAGAAAA-AAAAA
1 AAAAGAAAAGAAAAA
142212 AAAAGAAAAGAAAAA
1 AAAAGAAAAGAAAAA
142227 GGAAAGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAAAAA
Found at i:150592 original size:26 final size:26
Alignment explanation
Indices: 150556--150635 Score: 151
Period size: 26 Copynumber: 3.1 Consensus size: 26
150546 TCTGCTACCA
150556 ATAGTTCTTGAAGTTTGCAGGAAACT
1 ATAGTTCTTGAAGTTTGCAGGAAACT
150582 ATAGTTCTTGAAGTTTGCAGGAAACT
1 ATAGTTCTTGAAGTTTGCAGGAAACT
*
150608 ATAGTTCTTGAAGTTCGCAGGAAACT
1 ATAGTTCTTGAAGTTTGCAGGAAACT
150634 AT
1 AT
150636 CTTTTCTTGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.34
Consensus pattern (26 bp):
ATAGTTCTTGAAGTTTGCAGGAAACT
Found at i:154279 original size:3 final size:3
Alignment explanation
Indices: 154271--154296 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
154261 GATTTGATTA
154271 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
154297 GAAGAAGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:154301 original size:3 final size:3
Alignment explanation
Indices: 154295--154326 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
154285 TAATAATAAT
154295 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
154327 AACAATCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:155539 original size:20 final size:19
Alignment explanation
Indices: 155514--155570 Score: 64
Period size: 18 Copynumber: 3.0 Consensus size: 19
155504 TTATTTTTAA
*
155514 TATATTTATTTATTAAAATT
1 TATATTTATATA-TAAAATT
155534 TATATTTATATATAAAA-T
1 TATATTTATATATAAAATT
*
155552 TA-ATTTGTTATATAAAATT
1 TATATTT-ATATATAAAATT
155571 AATTTTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 4 0.12
18 12 0.36
19 6 0.18
20 11 0.33
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATATTTATATATAAAATT
Found at i:157316 original size:33 final size:33
Alignment explanation
Indices: 157259--157356 Score: 110
Period size: 33 Copynumber: 3.0 Consensus size: 33
157249 TTTGAGGTAA
* * *
157259 TGTATAGATACAATTCTTCTTGTATCGATACAT
1 TGTATCGATACAATTTTTCATGTATCGATACAT
* *
157292 TGTGTCGATACAATTTTTCATGTATCGATATAT
1 TGTATCGATACAATTTTTCATGTATCGATACAT
*
157325 TGTATCGATA-TATTATGTT-ATGTATCGATACA
1 TGTATCGATACAATT-T-TTCATGTATCGATACA
157357 AATAGTGGTA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
32 3 0.05
33 50 0.91
34 2 0.04
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATTTTTCATGTATCGATACAT
Found at i:157330 original size:13 final size:13
Alignment explanation
Indices: 157312--157338 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
157302 CAATTTTTCA
157312 TGTATCGATATAT
1 TGTATCGATATAT
157325 TGTATCGATATAT
1 TGTATCGATATAT
157338 T
1 T
157339 ATGTTATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (13 bp):
TGTATCGATATAT
Found at i:157445 original size:13 final size:13
Alignment explanation
Indices: 157427--157451 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
157417 ACAATGAACA
157427 TGTATCGATACAT
1 TGTATCGATACAT
157440 TGTATCGATACA
1 TGTATCGATACA
157452 AAGTATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:157944 original size:7 final size:7
Alignment explanation
Indices: 157932--158029 Score: 196
Period size: 7 Copynumber: 14.0 Consensus size: 7
157922 TAACCTATAA
157932 TTAGGGT
1 TTAGGGT
157939 TTAGGGT
1 TTAGGGT
157946 TTAGGGT
1 TTAGGGT
157953 TTAGGGT
1 TTAGGGT
157960 TTAGGGT
1 TTAGGGT
157967 TTAGGGT
1 TTAGGGT
157974 TTAGGGT
1 TTAGGGT
157981 TTAGGGT
1 TTAGGGT
157988 TTAGGGT
1 TTAGGGT
157995 TTAGGGT
1 TTAGGGT
158002 TTAGGGT
1 TTAGGGT
158009 TTAGGGT
1 TTAGGGT
158016 TTAGGGT
1 TTAGGGT
158023 TTAGGGT
1 TTAGGGT
158030 AATATACACA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 91 1.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
TTAGGGT
Found at i:159427 original size:28 final size:28
Alignment explanation
Indices: 159366--159436 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
159356 GAATAAAGCC
* *
159366 GAGGTTGGAGTATCCCCTCGAAGGTAAC
1 GAGGTTGGAGTATCCCCTCGAAGATAAA
*
159394 GGGGTTGGAGTATCCCCGAT-GAA-ATAAA
1 GAGGTTGGAGTATCCCC--TCGAAGATAAA
159422 GAGGTTGGAGTATCC
1 GAGGTTGGAGTATCC
159437 TCAATTGTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 33 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.23
Consensus pattern (28 bp):
GAGGTTGGAGTATCCCCTCGAAGATAAA
Found at i:159554 original size:52 final size:50
Alignment explanation
Indices: 159424--159592 Score: 185
Period size: 52 Copynumber: 3.3 Consensus size: 50
159414 GAAATAAAGA
* * * *
159424 GGTTGGAGTATCCTCAATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTT-GAAATAAAACCGG
* **
159476 AGTTGGAGTATCCCCGATTAAAGAAAAATTGGTGTTTTGAAAGTAAAACCGG
1 GGTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGAAA-TAAAACCGG
* * * * *
159528 GGTTGGAGTATCCCCGATTGTGGAAAATCGATAATTTGGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGT-GTTTTGAAATAAAACCGG
159579 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
159593 TTCGGAGATA
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
51 35 0.35
52 52 0.53
53 12 0.12
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAATAAAACCGG
Found at i:159579 original size:51 final size:51
Alignment explanation
Indices: 159459--159592 Score: 153
Period size: 51 Copynumber: 2.6 Consensus size: 51
159449 AATTGGTGTT
* * * * * *
159459 TTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGAAAAATTGGTG
1 TTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAAGAAAAATCGATA
* ** *
159510 TTTTGAAAGTAAAACCGGGGTTGGAGTATCCCCGATT-GTGGAAAATCGATAA
1 TTTGGAAA-TAAAACCGGGGTTGGAGTATCCCCGATTAAAGAAAAATCGAT-A
159562 TTTGGAAATAAAACCGGGGTTGGAGTATCCC
1 TTTGGAAATAAAACCGGGGTTGGAGTATCCC
159593 TTCGGAGATA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
51 38 0.54
52 32 0.46
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (51 bp):
TTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAAGAAAAATCGATA
Found at i:159620 original size:79 final size:80
Alignment explanation
Indices: 159525--159704 Score: 256
Period size: 80 Copynumber: 2.3 Consensus size: 80
159515 AAAGTAAAAC
* * *
159525 CGGGGTTGGAGTATCCCCGATTGTG-GAAAATCGATAATTTGGAAATAAAACC-GGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTATGAG-AAATCAATAATTTAGAAATAAAACCGGGGGTTGGAGT
* * *
159588 ATCCCTTCGGAGATAA
65 ATCCCATCGAAAATAA
* * *
159604 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAATTTAGAAATAAAACCGGGGGTTGGAGTA
159669 TCCCATCGAAAATAA
66 TCCCATCGAAAATAA
159684 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
159705 GATTAACGGG
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 44 0.49
80 46 0.51
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (80 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAATTTAGAAATAAAACCGGGGGTTGGAGTA
TCCCATCGAAAATAA
Found at i:159719 original size:27 final size:27
Alignment explanation
Indices: 159657--159734 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
159647 AATAAAGCCG
*
159657 GGGGTTGGAGTATCCCATCGA-AAATAAC
1 GGGGTTGGAGTATCCC--CGATGAATAAC
*
159685 GGGGTTGGAGTATCCCCGATGATTAAC
1 GGGGTTGGAGTATCCCCGATGAATAAC
159712 GGGGTTGGAGTATCCCCGATGAA
1 GGGGTTGGAGTATCCCCGATGAA
159735 AAATTGATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 3 0.07
27 27 0.59
28 16 0.35
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGATGAATAAC
Found at i:162281 original size:32 final size:32
Alignment explanation
Indices: 162240--162406 Score: 325
Period size: 32 Copynumber: 5.2 Consensus size: 32
162230 AGCTTCCTAG
*
162240 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
162272 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
162304 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
162336 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
162368 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
162400 CGATACA
1 CGATACA
162407 AATCGCTGAA
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 134 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:163753 original size:34 final size:34
Alignment explanation
Indices: 163710--163777 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
163700 AGTACTCATC
163710 GGTGTTTCACATGGTTTGACTTGATCCATTTGAA
1 GGTGTTTCACATGGTTTGACTTGATCCATTTGAA
*
163744 GGTGTTTCACATGGTTTGACTTGATTCATTTGAA
1 GGTGTTTCACATGGTTTGACTTGATCCATTTGAA
163778 ACCTTTTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.21, C:0.13, G:0.24, T:0.43
Consensus pattern (34 bp):
GGTGTTTCACATGGTTTGACTTGATCCATTTGAA
Found at i:170369 original size:20 final size:21
Alignment explanation
Indices: 170337--170378 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
170327 GGAGGTGCTG
170337 AACATGCTGT-AAATGCATGA
1 AACATGCTGTAAAATGCATGA
170357 AACATAGCT-TAAAATGCATGA
1 AACAT-GCTGTAAAATGCATGA
170378 A
1 A
170379 TTATGGGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (21 bp):
AACATGCTGTAAAATGCATGA
Found at i:171370 original size:52 final size:52
Alignment explanation
Indices: 171221--171349 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
171211 CGAAATATGA
171221 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
*
171273 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
171325 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
171350 AAGATCAGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
Found at i:171435 original size:32 final size:33
Alignment explanation
Indices: 171392--171456 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
171382 TAGCTTAAAT
*
171392 TGTATCGATACAAAAC-TTATGTATCGATACAA
1 TGTATCAATACAAAACTTTATGTATCGATACAA
*
171424 TGTATCAATACAACACTTTATGTATCGATACAA
1 TGTATCAATACAAAACTTTATGTATCGATACAA
171457 ATCGTTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.47
33 16 0.53
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (33 bp):
TGTATCAATACAAAACTTTATGTATCGATACAA
Found at i:172382 original size:49 final size:49
Alignment explanation
Indices: 172207--172721 Score: 582
Period size: 48 Copynumber: 10.6 Consensus size: 49
172197 CAGTTAGACT
* * * * *
172207 TGAAGGTGACAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * * *
172256 -CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * *
172304 TG-AGGTACCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * *
172352 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * *
172401 TGCTAAAGGCGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGA
1 TG---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * *
172453 T-AAAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * * *
172501 -CAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGGCTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
*
172549 TGAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTT----A
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * *
172594 --AAGGTGCCAATGTGCTGATTCAAGGCCGGCTACATTGGACTTAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
* * * **
172641 TGAAGGTACCAATGTGCTGATTCAAGGCCAACTATATTGGGTTTAAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AAAGA
* * * *
172691 TAAAGGCGCCAATGTGCTGGTTCAAGGCCAG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAG
172722 TGATATCAGA
Statistics
Matches: 397, Mismatches: 55, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
43 38 0.10
47 1 0.00
48 166 0.42
49 117 0.29
50 31 0.08
52 44 0.11
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
Done.