Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2426
Parameters: 2 7 7 80 10 50 1000
Length:  29627

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5455--5499
17
2.4
20
82
14
60
44
0
2
53
1.13
5504--5536
16
1.9
18
88
11
52
36
9
6
48
1.60
6791--6861
31
2.4
30
83
4
90
32
0
0
67
0.91
6955--6986
16
1.9
17
93
6
57
50
0
3
46
1.17
7226--7264
19
2.0
20
90
5
62
41
0
0
58
0.98
8184--8268
34
2.5
34
92
1
134
44
5
3
45
1.45
10908--10933
1
26.0
1
100
0
52
0
0
100
0
0.00
12358--12450
5
17.4
5
69
16
53
62
0
0
37
0.96
12358--12481
11
11.2
11
71
18
80
61
0
0
38
0.96
12363--12453
16
5.9
16
71
17
68
60
0
0
39
0.97
12360--12409
17
2.9
18
77
11
61
62
0
0
38
0.96
12997--13042
19
2.6
18
86
6
58
39
0
0
60
0.97
12983--13065
26
3.2
25
76
19
73
38
0
0
61
0.96
13016--13066
7
7.3
7
85
14
70
31
0
0
68
0.90
12961--13071
14
8.0
14
67
20
56
36
0
0
63
0.95
12962--13072
51
2.2
52
79
6
129
36
0
0
63
0.94
13211--13257
21
2.5
18
80
13
51
80
4
6
8
1.00
14903--14940
10
3.8
10
89
0
58
52
2
2
42
1.29
14903--14940
20
1.9
20
94
0
67
52
2
2
42
1.29
16945--16995
17
3.1
17
78
18
63
23
0
0
76
0.79
16968--16992
12
2.1
12
100
0
50
16
0
0
84
0.63
17117--17155
17
2.3
17
86
0
51
56
2
2
38
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17619--17664
19
2.4
19
79
13
58
45
0
0
54
0.99
17608--17664
25
2.2
26
84
12
73
42
0
0
57
0.98
17710--17754
21
2.1
22
83
4
56
51
4
0
44
1.21
18363--18393
14
2.3
13
94
5
53
32
0
0
67
0.91
19113--19137
13
1.9
13
100
0
50
88
0
0
12
0.53
19932--19975
16
2.6
17
82
17
56
61
0
0
38
0.96
19932--19977
17
2.8
16
84
15
58
60
0
0
39
0.97
19985--20020
14
2.4
15
90
9
56
58
0
0
41
0.98
20437--20497
16
3.7
15
72
19
59
44
0
0
55
0.99
20486--20531
21
2.1
23
88
8
69
54
0
0
45
0.99
21222--21290
28
2.4
29
76
4
79
60
0
2
36
1.11
21264--21306
22
2.0
22
90
9
70
62
0
0
37
0.95
21700--21797
27
3.5
28
75
19
89
40
2
1
56
1.18
22294--22319
6
4.3
6
100
0
52
15
0
0
84
0.62
23544--23577
15
2.3
15
89
0
50
47
0
0
52
1.00
25099--25137
2
19.5
2
100
0
78
51
0
0
48
1.00
25960--26000
2
20.0
2
95
5
73
48
0
2
48
1.14
26118--26388
89
3.0
89
90
1
418
51
10
1
36
1.44
27648--27692
24
1.9
24
86
13
67
57
0
0
42
0.98
27652--27702
7
6.9
7
75
20
50
56
0
0
43
0.99
29280--29358
26
3.0
26
73
10
81
45
1
1
51
1.17
29424--29487
15
4.2
15
78
6
58
62
0
1
35
1.05

Tables:   1

The End!