genome.fa.s2429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2429
Parameters: 2 7 7 80 10 50 1000
Length:  89756

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301--390	37	2.4	37	86	0	126	34	20	21	24	1.96
233--390	74	2.1	74	79	6	169	36	18	17	26	1.94
523--552	15	1.9	16	93	6	53	46	13	0	40	1.43
3952--4008	13	3.9	13	76	24	60	35	14	17	33	1.90
3932--4029	32	3.0	32	96	1	178	34	12	17	35	1.87
3930--4027	19	5.8	18	71	28	90	33	12	17	36	1.87
8271--8314	18	2.4	18	84	3	52	22	9	27	40	1.84
9561--9592	2	16.0	2	100	0	64	50	0	0	50	1.00
9597--9641	22	2.0	23	95	4	83	68	4	0	26	1.08
10071--10097	2	13.5	2	100	0	54	51	0	0	48	1.00
11912--11963	4	13.8	4	84	8	65	75	0	25	0	0.81
12364--12424	4	15.8	4	86	10	83	77	0	22	0	0.78
12362--12431	12	5.9	12	75	23	60	74	0	25	0	0.82
12743--12772	14	2.1	14	93	0	51	43	3	0	53	1.17
12746--12787	20	2.1	20	86	8	59	47	4	0	47	1.23
13977--14006	15	1.9	16	93	6	53	40	0	0	60	0.97
14280--14319	20	2.0	20	90	9	64	47	0	2	50	1.14
14353--14417	23	3.0	23	72	17	66	26	4	3	66	1.26
14716--14760	15	3.1	15	76	17	51	20	4	0	75	0.97
14897--14932	3	12.0	3	100	0	72	66	0	0	33	0.92
16587--16678	32	3.0	30	78	10	80	56	0	0	43	0.99
16609--16676	21	3.5	20	77	20	72	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19093--19234	70	2.0	70	98	0	275	36	19	23	21	1.95
22411--22500	37	2.4	37	86	0	126	34	20	21	24	1.96
22343--22500	74	2.1	74	79	6	169	36	18	17	27	1.93
22633--22667	16	2.2	16	90	10	54	48	17	0	34	1.47
26039--26132	32	2.9	32	96	1	170	34	11	18	36	1.87
26037--26132	13	5.7	18	71	28	86	33	11	17	37	1.86
30384--30427	18	2.4	18	84	3	52	22	9	27	40	1.84
30845--30898	24	2.2	24	83	0	72	42	11	11	35	1.76
30930--30973	22	2.0	22	95	0	79	40	15	15	27	1.88
31085--31133	14	3.5	14	83	8	64	67	0	0	32	0.91
31093--31135	12	3.3	12	81	12	50	67	0	0	32	0.91
31447--31539	30	3.2	28	75	17	91	53	1	2	43	1.19
31447--31553	29	3.7	28	74	12	92	55	0	2	41	1.21
33945--34029	20	3.7	20	71	28	71	28	17	11	42	1.84
34453--34481	13	2.1	14	93	6	51	65	27	0	6	1.18
38095--38125	16	1.9	16	93	0	53	29	3	16	51	1.59
38903--38943	21	2.0	20	85	4	55	73	4	0	21	1.02
39552--39577	5	5.2	5	100	0	52	19	19	61	0	1.35
42736--42791	2	29.0	2	79	13	55	42	1	1	53	1.21
44611--44743	64	2.1	65	84	4	171	39	2	9	48	1.49
46260--46299	2	20.0	2	100	0	80	50	0	0	50	1.00
46304--46348	22	2.0	23	95	4	83	68	4	0	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46780--46816	2	18.5	2	100	0	74	51	0	0	48	1.00
48080--48104	13	1.9	13	100	0	50	64	8	4	24	1.38
48257--48301	21	2.2	20	84	8	54	60	2	0	37	1.09
48606--48640	4	8.8	4	100	0	70	77	0	22	0	0.78
48685--48746	10	6.5	10	75	17	69	32	0	0	67	0.91
48951--48977	4	6.8	4	100	0	54	25	22	0	51	1.48
49056--49109	4	13.8	4	83	11	67	77	0	22	0	0.76
49706--49755	23	2.2	22	82	6	64	22	2	2	74	1.03
50665--50694	15	1.9	16	93	6	53	40	0	0	60	0.97
50970--51007	20	2.0	20	89	5	60	44	0	2	52	1.14
51114--51144	15	2.1	14	94	5	53	32	6	6	54	1.51
51405--51449	15	3.1	15	76	17	51	20	4	0	75	0.97
52751--52788	19	1.9	20	89	10	60	63	0	0	36	0.95
52876--52928	15	3.5	16	80	12	51	62	0	1	35	1.06
53083--53174	32	3.0	30	78	10	80	56	0	0	43	0.99
53105--53172	21	3.5	20	77	20	72	58	0	0	41	0.98
53503--53544	21	2.0	21	86	9	59	61	0	2	35	1.09
55546--55687	70	2.0	70	95	0	257	37	18	22	21	1.94
58863--58952	37	2.4	37	86	0	126	34	20	21	24	1.96
58795--58952	74	2.1	74	79	6	169	36	18	17	26	1.94
62507--62563	13	3.9	13	76	24	60	35	14	17	33	1.90
62487--62584	32	3.0	32	96	1	178	34	12	17	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62485--62582	19	5.8	18	71	28	90	33	12	17	36	1.87
66824--66867	18	2.4	18	84	3	52	22	9	27	40	1.84
68114--68147	2	17.0	2	100	0	68	50	0	0	50	1.00
68152--68196	22	2.0	23	95	4	83	68	4	0	26	1.08
68626--68650	2	12.5	2	100	0	50	52	0	0	48	1.00
69282--69313	2	16.0	2	100	0	64	50	0	0	50	1.00
70472--70523	4	13.8	4	84	8	65	75	0	25	0	0.81
70923--70982	4	15.8	4	83	13	74	76	0	23	0	0.78
70933--70976	14	3.1	14	80	6	52	77	0	22	0	0.77
71301--71330	14	2.1	14	93	0	51	43	3	0	53	1.17
71304--71345	20	2.1	20	86	8	59	47	4	0	47	1.23
71577--71626	23	2.2	22	82	6	64	22	2	2	74	1.03
72537--72566	15	1.9	16	93	6	53	40	0	0	60	0.97
72840--72879	20	2.0	20	90	9	64	47	0	2	50	1.14
72913--72977	23	3.0	23	72	17	66	26	4	3	66	1.26
73277--73315	15	2.6	15	80	15	53	23	5	0	71	1.05
73457--73492	3	12.0	3	100	0	72	66	0	0	33	0.92
74938--74990	15	3.5	16	80	12	51	62	0	1	35	1.06
75087--75230	5	29.2	5	66	21	56	53	2	2	42	1.24
75168--75254	38	2.3	37	81	14	106	57	0	1	41	1.06
75161--75228	18	4.1	16	76	17	68	57	0	0	42	0.98
77647--77788	70	2.0	70	95	0	257	37	18	22	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80959--81048	37	2.4	37	86	0	126	34	20	21	24	1.96
80890--81048	74	2.1	75	80	5	180	36	18	17	27	1.94
81181--81215	16	2.2	16	90	10	54	48	20	0	31	1.50
84607--84631	13	1.9	13	100	0	50	36	16	16	32	1.90
84587--84652	32	2.0	33	91	2	107	36	12	15	36	1.84
84672--84724	21	2.6	21	87	3	72	32	18	11	37	1.87
88873--88916	18	2.4	18	84	3	52	22	9	27	40	1.84
89330--89382	24	2.2	24	80	3	63	43	9	11	35	1.73
89572--89617	13	3.5	13	79	5	56	67	0	0	32	0.91
89571--89620	14	3.8	12	80	15	55	70	0	0	30	0.88

Tables:   1

The End!