genome.fa.s2431.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2431
Parameters: 2 7 7 80 10 50 1000
Length:  130798

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1850--1905	22	2.5	23	97	2	105	62	8	10	17	1.52
2813--2887	20	3.8	20	78	3	71	40	13	13	33	1.83
2810--2887	40	2.0	39	84	2	102	39	14	12	33	1.84
3375--4655	28	44.9	28	88	5	1788	22	17	32	28	1.96
3375--4656	29	44.9	29	89	4	1866	21	17	32	28	1.96
3363--4656	57	22.6	57	88	4	1862	22	17	32	28	1.96
5879--5953	8	9.5	8	80	16	52	1	2	8	88	0.68
5890--5953	1	64.0	1	80	0	74	0	1	7	90	0.51
5890--5954	12	5.6	12	85	12	91	0	1	9	89	0.56
5877--5954	23	3.5	21	81	11	84	1	2	8	87	0.70
5897--5952	11	4.8	11	93	6	85	0	0	8	91	0.43
19012--19066	22	2.5	22	100	0	110	61	9	10	18	1.54
19977--20051	20	3.8	20	78	3	71	40	13	13	33	1.83
19974--20051	40	2.0	39	84	2	102	39	14	12	33	1.84
31586--31622	2	18.5	2	100	0	74	48	0	0	51	1.00
32884--32925	2	21.0	2	100	0	84	50	0	0	50	1.00
35196--35276	30	2.7	30	88	3	92	39	2	3	54	1.32
35206--35276	30	2.4	31	88	9	103	35	1	4	59	1.26
36533--36578	15	3.1	15	81	9	58	23	0	4	71	1.03
36694--36757	26	2.4	27	77	12	69	17	3	7	71	1.22
37340--37405	23	3.0	22	78	22	77	30	3	0	66	1.06
37340--37398	11	5.3	11	78	15	59	30	1	0	67	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37454--37501	19	2.5	20	80	16	57	58	0	0	41	0.98
37459--37502	19	2.4	19	79	20	58	59	0	0	40	0.98
38741--38870	69	1.9	68	85	6	183	40	9	6	43	1.64
38941--38972	4	8.0	4	100	0	64	75	0	0	25	0.81
39115--39164	21	2.3	23	89	6	77	66	0	4	30	1.10
39152--39247	17	5.5	18	70	19	71	52	1	2	44	1.19
39161--39243	25	3.3	26	71	20	77	50	1	2	45	1.22
39573--39610	14	2.6	15	87	4	51	76	0	15	7	1.01
47501--47576	37	2.0	38	97	2	145	34	7	13	44	1.72
50633--50661	2	14.5	2	100	0	58	0	0	48	51	1.00
50970--51028	25	2.4	25	97	0	109	37	22	3	37	1.71
54777--54856	29	2.8	29	77	11	74	57	5	21	16	1.58
55046--55087	11	3.5	12	81	18	52	9	9	0	80	0.89
55487--55537	26	2.0	26	96	0	93	21	23	13	41	1.89
55707--55784	25	3.0	26	78	10	72	38	5	6	50	1.50
57303--57360	31	1.9	31	85	3	82	36	0	6	56	1.26
57480--57525	23	2.0	24	83	12	60	21	13	4	60	1.49
59782--59846	20	3.6	20	73	26	81	38	12	15	33	1.85
59782--59881	33	3.0	33	94	0	164	36	12	14	38	1.83
59802--59859	13	3.9	13	73	26	53	37	13	15	32	1.87
59925--59949	13	1.9	13	100	0	50	32	16	16	36	1.90
59958--60077	52	2.3	52	95	0	213	35	17	17	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70920--70949	2	15.0	2	100	0	60	50	0	0	50	1.00
71505--71572	26	2.5	27	85	4	93	29	5	7	57	1.50
71505--71580	26	2.9	26	82	7	84	28	5	6	59	1.45
85238--85283	22	2.1	23	88	8	69	43	0	0	56	0.99
85625--85666	18	2.4	18	88	4	59	57	0	0	42	0.99
87320--87366	18	2.5	20	82	6	53	42	6	2	48	1.40
87358--87749	202	1.9	202	87	4	567	50	7	6	36	1.56
87613--88049	158	3.0	138	80	14	527	50	6	5	37	1.54
87808--87850	21	2.0	21	100	0	86	41	0	9	48	1.35
87668--87994	158	2.1	156	90	5	534	51	6	5	37	1.51
87734--88741	329	3.0	328	85	9	1383	50	4	5	39	1.45
88127--88211	21	4.1	21	89	4	93	47	1	5	45	1.34
87798--88741	353	2.8	346	87	6	1326	50	4	5	39	1.45
88286--88333	25	2.0	24	83	4	60	56	0	4	39	1.19
87892--88516	170	3.6	169	78	9	740	50	4	5	39	1.46
88456--88506	24	2.1	24	82	7	59	58	0	0	41	0.98
88480--88523	21	2.1	21	91	4	72	52	0	0	47	1.00
88487--88541	21	2.7	21	83	8	60	49	1	3	45	1.30
88594--88656	31	2.0	32	87	9	94	60	1	1	36	1.16
87706--88701	159	6.0	162	72	16	637	51	4	5	38	1.46
90793--90850	27	2.2	27	96	3	109	44	15	24	15	1.85
90878--90918	2	20.5	2	94	0	73	48	0	2	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91851--91897	22	2.2	20	82	14	51	36	2	2	59	1.21
96300--96339	20	2.0	20	95	0	71	35	25	12	27	1.92
101473--101527	17	3.4	17	73	26	57	54	0	0	45	0.99
108736--108770	13	2.5	14	90	9	54	68	2	0	28	1.04
109102--109192	21	4.1	21	70	19	69	45	0	1	53	1.07
109093--109144	15	3.5	15	79	7	61	57	0	0	42	0.98
109093--109157	15	4.2	16	75	14	57	53	0	0	46	1.00
109135--109230	21	4.7	21	74	14	85	36	0	1	62	1.02
111213--111263	17	2.9	17	85	2	66	52	0	1	45	1.12
111244--111304	31	1.9	32	83	9	81	39	0	0	60	0.97
111310--111343	13	2.4	15	90	9	54	67	2	0	29	1.05
112581--112619	19	2.2	18	90	9	62	61	0	0	38	0.96
113038--113076	8	4.6	9	87	12	64	33	7	0	58	1.26
113038--113076	17	2.3	17	95	0	69	33	7	0	58	1.26
121720--121764	18	2.6	18	86	13	67	71	0	0	28	0.87
121777--121820	14	3.1	15	80	9	56	65	4	2	27	1.23
122043--122079	10	3.2	12	78	21	51	43	2	0	54	1.14
123185--123299	51	2.3	51	89	3	169	28	11	27	32	1.91
123424--123637	51	4.2	51	78	7	240	32	11	25	30	1.91
123418--123637	102	2.2	99	87	4	314	32	11	25	30	1.91
124990--125659	333	2.0	332	95	0	1214	28	10	25	35	1.89
126103--126212	20	5.8	20	74	16	92	39	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126123--126188	33	2.0	33	90	0	105	39	16	15	28	1.89
126103--126212	53	2.1	53	84	6	143	39	15	15	30	1.88
128731--128770	17	2.3	18	86	4	55	62	10	0	27	1.27
130392--130435	16	2.6	17	75	10	54	34	0	4	61	1.16
130523--130588	21	3.1	21	78	12	55	42	3	0	54	1.15
130524--130566	18	2.2	21	88	12	65	37	0	0	62	0.95
130533--130578	20	2.3	21	85	7	60	41	4	0	54	1.20

Tables:   1

The End!