Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2434
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24480
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Found at i:835 original size:72 final size:72
Alignment explanation
Indices: 748--965 Score: 339
Period size: 72 Copynumber: 3.0 Consensus size: 72
738 TCCTGAAAGC
* * *
748 TTATTATCACACAAATATAACATTTTCAAACTAGAAAGATTTCCAATTGC-TTCAGGAATTTGAC
1 TTATTATCACTCAAATATAACATTCTCAAGCTAGAAAGATTTCCAATTGCATT-AGGAATTTGAC
*
812 CTTCCAGG
65 CTTCCAGA
* *
820 TTATTATCATTCAAATATAACATTCCCAAGCTAGAAAGATTTCCAATTGCATTAGGAATTTGACC
1 TTATTATCACTCAAATATAACATTCTCAAGCTAGAAAGATTTCCAATTGCATTAGGAATTTGACC
885 TTCCAGA
66 TTCCAGA
* * *
892 TAATTATTACTCAAATATAGCATTCTCAAGCTAGAAAGATTTCCAATTGCATTAGGAATTTGACC
1 TTATTATCACTCAAATATAACATTCTCAAGCTAGAAAGATTTCCAATTGCATTAGGAATTTGACC
957 TTCCAGA
66 TTCCAGA
964 TT
1 TT
966 GCTTTCAGTT
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
72 131 0.98
73 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (72 bp):
TTATTATCACTCAAATATAACATTCTCAAGCTAGAAAGATTTCCAATTGCATTAGGAATTTGACC
TTCCAGA
Found at i:1757 original size:17 final size:18
Alignment explanation
Indices: 1735--1773 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
1725 AAATAAAAAA
*
1735 TAAATAT-TTAATTTTAT
1 TAAATATATTAATTATAT
1752 TAAATATAATTAATTATAT
1 TAAATAT-ATTAATTATAT
1771 TAA
1 TAA
1774 TTAATTGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAAATATATTAATTATAT
Found at i:2347 original size:16 final size:15
Alignment explanation
Indices: 2326--2358 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
2316 TAGTGTTATA
2326 TTAAAATTTTATAGTT
1 TTAAAATTTTAT-GTT
2342 TTAAAATTTTATGTT
1 TTAAAATTTTATGTT
2357 TT
1 TT
2359 TATTTTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
TTAAAATTTTATGTT
Found at i:2359 original size:16 final size:16
Alignment explanation
Indices: 2312--2360 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
2302 CTTTCATTTT
2312 ATTTTAGTGTTATATTAAA
1 ATTTTA-TGTT-T-TTAAA
2331 ATTTTATAG-TTTTAAA
1 ATTTTAT-GTTTTTAAA
2347 ATTTTATGTTTTTA
1 ATTTTATGTTTTTA
2361 TTTTCAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 1 0.04
16 17 0.61
17 1 0.04
18 2 0.07
19 7 0.25
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
ATTTTATGTTTTTAAA
Found at i:2750 original size:32 final size:32
Alignment explanation
Indices: 2707--2775 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
2697 TTTATTATAT
2707 TATTAAATATATTAAAATT-TCAAATATAAATA
1 TATTAAATATATTAAAATTATCAAAT-TAAATA
* * *
2739 TATTAAGTATATTAAATTTATCATATTAAATA
1 TATTAAATATATTAAAATTATCAAATTAAATA
2771 TATTA
1 TATTA
2776 TGTTACTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 28 0.85
33 5 0.15
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (32 bp):
TATTAAATATATTAAAATTATCAAATTAAATA
Found at i:2775 original size:9 final size:9
Alignment explanation
Indices: 2707--2755 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 9
2697 TTTATTATAT
2707 TATTAAATA
1 TATTAAATA
2716 TATTAAA-A
1 TATTAAATA
*
2724 T-TTCAA-A
1 TATTAAATA
2731 TA-TAAATA
1 TATTAAATA
*
2739 TATTAAGTA
1 TATTAAATA
2748 TATTAAAT
1 TATTAAAT
2756 TTATCATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
7 9 0.27
8 5 0.15
9 19 0.58
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (9 bp):
TATTAAATA
Found at i:3312 original size:40 final size:43
Alignment explanation
Indices: 3245--3355 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 43
3235 TAAGTTATTA
*
3245 TTATATT-TA-AAATATTATATATTTATATA-TTA-AT-A-AT
1 TTATATTATATAAATATTATAAATTTATATATTTATATCATAT
*
3282 TTATATTATATAAATTTTAATAAATTTATATATTTATATCATAT
1 TTATATTATATAAATATT-ATAAATTTATATATTTATATCATAT
3326 TTATATTATATTTAAA-ATTATTAAATTTAT
1 TTATATTATA--TAAATATTA-TAAATTTAT
3356 TAATATATAT
Statistics
Matches: 61, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
37 7 0.11
38 2 0.03
39 6 0.10
40 12 0.20
41 3 0.05
42 2 0.03
43 1 0.02
44 13 0.21
45 11 0.18
46 4 0.07
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (43 bp):
TTATATTATATAAATATTATAAATTTATATATTTATATCATAT
Found at i:8408 original size:15 final size:16
Alignment explanation
Indices: 8388--8428 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
8378 CCCAAATAAA
8388 AAATTTTAAAT-TCAT
1 AAATTTTAAATATCAT
8403 AAA-TTTAAATATCAT
1 AAATTTTAAATATCAT
*
8418 AAATTTCAAAT
1 AAATTTTAAAT
8429 CTAAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 7 0.30
15 10 0.43
16 6 0.26
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATTTTAAATATCAT
Found at i:8972 original size:23 final size:22
Alignment explanation
Indices: 8915--8972 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
8905 AATTTTATAT
*
8915 TTTATATAAATATGATATGAAAA
1 TTTAT-TAAATATGATATAAAAA
*
8938 TTAATTAAATATGATATAAAATA
1 TTTATTAAATATGATATAAAA-A
*
8961 TTTATTATATAT
1 TTTATTAAATAT
8973 TTATATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 15 0.50
23 15 0.50
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (22 bp):
TTTATTAAATATGATATAAAAA
Found at i:9025 original size:27 final size:27
Alignment explanation
Indices: 8963--9059 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 27
8953 ATAAAATATT
*
8963 TATTATATATTTATATTATTTTTTAATA
1 TATTATAT-TTTATATTATTTTTTAAAA
*
8991 TATCATATTTTATATTATTTTTTAAAA
1 TATTATATTTTATATTATTTTTTAAAA
* *
9018 T-TT-TATATTATATTCATATTTT---A
1 TATTATATTTTATATT-ATTTTTTAAAA
*
9041 TATTATATTTGATATTATT
1 TATTATATTTTATATTATT
9060 AGATCTAATC
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
23 2 0.03
24 4 0.07
25 19 0.33
26 7 0.12
27 19 0.33
28 7 0.12
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (27 bp):
TATTATATTTTATATTATTTTTTAAAA
Found at i:9569 original size:31 final size:30
Alignment explanation
Indices: 9533--9624 Score: 105
Period size: 31 Copynumber: 2.9 Consensus size: 30
9523 AATTCACTGA
9533 ATTAAATATAGA-TACTTGTAAATTTGATAAT
1 ATTAAATATA-ATTA-TTGTAAATTTGATAAT
* * *
9564 ATTAAACAAAATTATTTATAAATTTGATGAAT
1 ATTAAATATAATTA-TTGTAAATTTGAT-AAT
9596 ATTAAATATAATTATTCGTAAATTTGATA
1 ATTAAATATAATTATT-GTAAATTTGATA
9625 GTTCATAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
30 1 0.02
31 25 0.49
32 25 0.49
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (30 bp):
ATTAAATATAATTATTGTAAATTTGATAAT
Found at i:9609 original size:32 final size:31
Alignment explanation
Indices: 9533--9624 Score: 114
Period size: 32 Copynumber: 2.9 Consensus size: 31
9523 AATTCACTGA
*
9533 ATTAAATATAGA-TACTTGTAAATTTGATAAT
1 ATTAAATATA-ATTATTTGTAAATTTGATAAT
* * *
9564 ATTAAACAAAATTATTTATAAATTTGATGAAT
1 ATTAAATATAATTATTTGTAAATTTGAT-AAT
*
9596 ATTAAATATAATTATTCGTAAATTTGATA
1 ATTAAATATAATTATTTGTAAATTTGATA
9625 GTTCATAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
30 1 0.02
31 23 0.45
32 27 0.53
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (31 bp):
ATTAAATATAATTATTTGTAAATTTGATAAT
Found at i:10001 original size:5 final size:5
Alignment explanation
Indices: 9991--10029 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
9981 ATATAATAAT
*
9991 TTATA TTATA -TATA TTATT TTATA TTATA TTTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA -TTATA TTAT
10030 TTTTTTAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.13
5 21 0.70
6 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTATA
Found at i:10012 original size:19 final size:20
Alignment explanation
Indices: 9990--10032 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
9980 CATATAATAA
9990 TTTATATTATA-TATATTAT
1 TTTATATTATATTATATTAT
10009 TTTATATTATATTTATATTAT
1 TTTATATTATA-TTATATTAT
10030 TTT
1 TTT
10033 TTTAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 11 0.50
21 11 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTATATTATATTATATTAT
Found at i:11611 original size:20 final size:20
Alignment explanation
Indices: 11582--11619 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11572 GGTTGTCGAG
* *
11582 GCACTGTTTACGTATACAAA
1 GCACTATTTACATATACAAA
11602 GCACTATTTACATATACA
1 GCACTATTTACATATACA
11620 GTTATTGTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (20 bp):
GCACTATTTACATATACAAA
Found at i:15713 original size:34 final size:35
Alignment explanation
Indices: 15675--15758 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 35
15665 GGTGGGGAGA
*
15675 ATTGTTGACTAAATAGG-TGATTTGGTGGTTTGCC
1 ATTGTTGACTAAATAGGATGATTTGGTAGTTTGCC
15709 ATTGTTGACTAAAT-GGATGATTTGGTAGTTTGCC
1 ATTGTTGACTAAATAGGATGATTTGGTAGTTTGCC
15743 ATTGTTGACTAAATAG
1 ATTGTTGACTAAATAG
15759 CTAAAGATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
33 2 0.04
34 44 0.94
35 1 0.02
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.40
Consensus pattern (35 bp):
ATTGTTGACTAAATAGGATGATTTGGTAGTTTGCC
Found at i:16688 original size:16 final size:16
Alignment explanation
Indices: 16667--16721 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
16657 TAGGAAGGAA
16667 GGAAAATTAAAAAGAT
1 GGAAAATTAAAAAGAT
*
16683 GGAAAATTGAAAGAGA-
1 GGAAAATT-AAAAAGAT
*
16699 GGAAAATTTGAAAA-AT
1 GGAAAA-TTAAAAAGAT
16715 GGAAAAT
1 GGAAAAT
16722 ATTTTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 2 0.06
16 23 0.70
17 8 0.24
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (16 bp):
GGAAAATTAAAAAGAT
Found at i:16711 original size:17 final size:16
Alignment explanation
Indices: 16666--16713 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
16656 ATAGGAAGGA
16666 AGGAAAATT-AAAAAG
1 AGGAAAATTGAAAAAG
*
16681 ATGGAAAATTGAAAGAG
1 A-GGAAAATTGAAAAAG
16698 AGGAAAATTTGAAAAA
1 AGGAAAA-TTGAAAAA
16714 TGGAAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 14 0.50
17 13 0.46
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (16 bp):
AGGAAAATTGAAAAAG
Found at i:17804 original size:25 final size:24
Alignment explanation
Indices: 17741--17807 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
17731 ATCAATTCTG
*
17741 ATTTGAATTTAAAAAAATTCAATCA
1 ATTTG-ATTTAATAAAATTCAATCA
* *
17766 A-TTCATTCTAAATAAAATTTAATCTA
1 ATTTGATT-T-AATAAAATTCAATC-A
17792 ATTTGATTTAATAAAA
1 ATTTGATTTAATAAAA
17808 AAATAATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
23 3 0.09
24 3 0.09
25 20 0.59
26 3 0.09
27 5 0.15
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.40
Consensus pattern (24 bp):
ATTTGATTTAATAAAATTCAATCA
Found at i:18083 original size:16 final size:16
Alignment explanation
Indices: 18062--18128 Score: 73
Period size: 16 Copynumber: 4.2 Consensus size: 16
18052 TAAACCCGAT
**
18062 TAACTTAAATTTAAAA
1 TAACTTAAACCTAAAA
18078 TAACTTAAACCTAAAA
1 TAACTTAAACCTAAAA
*
18094 T-AGTATAAACCTAAAA
1 TAACT-TAAACCTAAAA
* *
18110 TAACTTAAAACTACAA
1 TAACTTAAACCTAAAA
18126 TAA
1 TAA
18129 TTCAAACTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
15 2 0.05
16 39 0.91
17 2 0.05
ACGTcount: A:0.57, C:0.13, G:0.01, T:0.28
Consensus pattern (16 bp):
TAACTTAAACCTAAAA
Found at i:18143 original size:32 final size:32
Alignment explanation
Indices: 18073--18162 Score: 94
Period size: 32 Copynumber: 2.8 Consensus size: 32
18063 AACTTAAATT
* *
18073 TAAAATAACTTAAACCTAAAATAGTATAAACC
1 TAAAATAACTTAAAACTAAAATAATATAAACC
* *
18105 TAAAATAACTTAAAACTACAATAAT-TCAAACT
1 TAAAATAACTTAAAACTAAAATAATAT-AAACC
* *
18137 TGAAATAA-TTCGAAACTAAAATAATA
1 TAAAATAACTT-AAAACTAAAATAATA
18163 CGAATAAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
31 3 0.06
32 45 0.94
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (32 bp):
TAAAATAACTTAAAACTAAAATAATATAAACC
Found at i:18158 original size:16 final size:16
Alignment explanation
Indices: 18104--18166 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
18094 TAGTATAAAC
*
18104 CTAAAATAACTT-AAAA
1 CTAAAATAA-TTCGAAA
*
18120 CTACAATAATTC-AAA
1 CTAAAATAATTCGAAA
*
18135 CTTGAAATAATTCGAAA
1 C-TAAAATAATTCGAAA
*
18152 CTAAAATAATACGAA
1 CTAAAATAATTCGAA
18167 TAAAAAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 6 0.15
16 29 0.74
17 4 0.10
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (16 bp):
CTAAAATAATTCGAAA
Found at i:19037 original size:21 final size:22
Alignment explanation
Indices: 19013--19056 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
19003 TACTTTTATT
19013 TAAAT-TTAATTATAAAAA-ATA
1 TAAATATTAA-TATAAAAATATA
*
19034 TAAATATTTATATAAAAATATA
1 TAAATATTAATATAAAAATATA
19056 T
1 T
19057 TTTAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAATATTAATATAAAAATATA
Found at i:22644 original size:16 final size:18
Alignment explanation
Indices: 22619--22656 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
22609 AATACGCTAT
22619 AATATAAAAAATAATA-A
1 AATATAAAAAATAATATA
22636 AATAT-AAAAATAATATA
1 AATATAAAAAATAATATA
22653 AATA
1 AATA
22657 CAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AATATAAAAAATAATATA
Found at i:22666 original size:11 final size:11
Alignment explanation
Indices: 22616--22667 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
22606 TTAAATACGC
22616 TATAATATAAAA
1 TATAA-ATAAAA
*
22628 AAT-AATAAAA
1 TATAAATAAAA
22638 TATAAA-AATAA
1 TATAAATAA-AA
*
22649 TATAAATACAA
1 TATAAATAAAA
22660 TATAAATA
1 TATAAATA
22668 TATGAATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
10 10 0.29
11 21 0.62
12 3 0.09
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (11 bp):
TATAAATAAAA
Found at i:22720 original size:19 final size:19
Alignment explanation
Indices: 22698--22748 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
22688 TAAATAAATT
* *
22698 ATTAATATTTTATAATTTA
1 ATTAATAATATATAATTTA
22717 ATTAATAATATATAATTTA
1 ATTAATAATATATAATTTA
*
22736 AAT-ATAAT-TATAA
1 ATTAATAATATATAA
22749 AATAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 5 0.17
18 5 0.17
19 19 0.66
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTAATAATATATAATTTA
Found at i:22742 original size:11 final size:12
Alignment explanation
Indices: 22686--22753 Score: 56
Period size: 11 Copynumber: 5.9 Consensus size: 12
22676 TATTAAAATA
22686 TATAAATA-AAT
1 TATAAATATAAT
* *
22697 TATTAATAT-TT
1 TATAAATATAAT
*
22708 TAT-AATTTAAT
1 TATAAATATAAT
22719 TAATAATATATAAT
1 T-ATAA-ATATAAT
22733 T-TAAATATAAT
1 TATAAATATAAT
22744 TATAAA-ATAA
1 TATAAATATAA
22754 AAATAATATG
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
10 4 0.09
11 25 0.54
12 9 0.20
13 1 0.02
14 7 0.15
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TATAAATATAAT
Found at i:23370 original size:23 final size:24
Alignment explanation
Indices: 23326--23370 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
23316 AATTTTAAAT
*
23326 ATTATAATAATTTAAATTATATAA
1 ATTATAATAATTTAAATGATATAA
*
23350 ATTA-AATAATTTATATGATAT
1 ATTATAATAATTTAAATGATAT
23371 TTATATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
ATTATAATAATTTAAATGATATAA
Done.