genome.fa.s2435.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2435
Parameters: 2 7 7 80 10 50 1000
Length:  91710

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2408--2870	79	5.8	78	79	6	325	37	12	23	26	1.90
2451--2870	159	2.7	157	80	5	429	38	12	23	25	1.90
2522--2902	79	4.8	79	80	4	410	35	12	25	26	1.92
2907--3101	79	2.5	78	84	4	239	26	21	12	40	1.89
9096--10097	49	20.8	49	86	5	1409	24	26	18	30	1.98
9144--9211	22	3.1	22	62	26	54	23	25	20	30	1.98
9678--9745	22	3.1	22	62	26	54	23	25	20	30	1.98
10007--10145	52	2.6	52	82	4	161	25	25	15	33	1.95
10929--10995	33	2.0	33	88	0	98	34	11	13	40	1.81
10949--10973	13	1.9	13	100	0	50	36	16	16	32	1.90
11039--11063	13	1.9	13	100	0	50	32	16	16	36	1.90
11072--11192	52	2.3	52	97	0	224	34	18	18	28	1.94
17477--17506	4	7.5	4	92	0	51	73	0	0	26	0.84
19564--19822	79	3.3	78	85	5	326	37	12	24	26	1.91
19759--19925	51	3.3	51	81	6	214	37	9	24	28	1.87
19856--20161	79	3.9	78	84	3	373	34	11	26	27	1.91
20052--20110	28	2.0	28	83	9	73	30	13	28	27	1.94
20046--20291	130	1.9	130	81	3	298	38	11	21	28	1.88
20147--20353	79	2.6	79	84	1	245	38	12	20	28	1.89
19809--20431	288	2.2	285	79	5	657	36	10	23	28	1.89
20174--20476	79	3.8	78	79	5	270	36	12	21	30	1.90
21917--21942	2	13.0	2	100	0	52	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23025--23078	20	2.6	21	88	2	74	29	18	11	40	1.85
25727--25783	29	2.1	29	87	9	84	47	1	0	50	1.11
27458--27501	23	1.9	23	85	0	61	36	2	0	61	1.09
28279--28325	2	24.0	2	95	4	87	48	0	0	51	1.00
29360--29403	16	2.6	18	82	7	56	40	0	2	56	1.11
32587--32615	2	14.5	2	100	0	58	51	0	0	48	1.00
33491--33736	122	2.0	122	98	0	474	36	6	13	42	1.71
33793--33851	29	2.0	29	87	6	84	52	5	5	37	1.46
34150--34184	14	2.5	14	95	0	61	31	5	2	60	1.35
37238--37283	23	2.0	23	83	12	58	58	0	0	41	0.98
37250--37359	29	3.7	31	68	18	81	59	0	0	40	0.98
38971--39008	20	1.9	20	84	10	51	39	7	5	47	1.55
42359--42413	22	2.5	22	100	0	110	61	9	10	18	1.54
43326--43400	20	3.8	20	80	3	80	40	12	13	34	1.81
43323--43400	40	2.0	39	87	2	111	39	12	12	34	1.82
44452--44522	32	2.3	32	81	13	87	47	7	7	38	1.58
47071--47120	2	25.0	2	95	0	91	52	0	0	48	1.00
49100--49193	42	2.3	41	78	14	95	34	0	4	61	1.15
50310--50353	24	1.9	22	86	9	61	61	0	0	38	0.96
60006--60043	11	3.4	11	82	17	51	36	0	0	63	0.95
61620--61674	27	2.0	27	82	0	65	47	0	3	49	1.19
61823--61883	14	4.3	14	79	4	59	62	3	0	34	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61830--61870	19	2.1	19	86	13	57	68	0	0	31	0.90
63574--63635	13	4.7	13	75	16	56	41	0	3	54	1.16
63574--63636	6	10.7	6	75	17	53	42	0	3	53	1.16
63661--63688	14	2.0	14	100	0	56	35	0	0	64	0.94
64320--64366	17	2.6	17	83	12	58	42	0	2	55	1.12
65476--65501	2	13.0	2	100	0	52	50	0	0	50	1.00
72250--72275	1	26.0	1	100	0	52	0	0	0	100	0.00
77548--77589	23	1.9	23	85	9	61	57	0	0	42	0.99
77784--77820	8	4.8	8	86	6	58	86	0	2	10	0.67
77784--77820	15	2.4	16	90	4	58	86	0	2	10	0.67
77784--77826	16	2.7	15	89	7	59	81	2	4	11	0.93
78513--78566	22	2.4	22	81	3	63	42	0	1	55	1.10
79611--79637	12	2.2	12	100	0	54	0	14	0	85	0.61
80290--80362	21	3.4	21	76	12	69	45	0	0	54	0.99
80482--80523	16	2.5	17	80	11	50	57	0	0	42	0.99
80527--80577	21	2.4	22	83	6	61	37	0	1	60	1.08
81294--81331	15	2.6	15	91	4	60	44	0	2	52	1.14
81394--81419	7	3.7	7	100	0	52	11	0	0	88	0.52
81709--81768	19	3.3	17	77	13	57	38	0	0	61	0.96
81709--81769	6	10.0	6	75	16	54	37	0	0	62	0.96
82573--82598	2	13.0	2	100	0	52	50	0	0	50	1.00
83166--83207	19	2.3	18	87	4	57	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83408--83490	5	16.8	5	78	14	84	39	0	0	60	0.97
83408--83490	26	3.3	26	76	15	86	39	0	0	60	0.97
83455--83504	12	4.2	12	70	14	50	46	0	0	54	1.00
83458--83563	33	3.2	33	81	12	112	43	1	0	54	1.11
83466--83563	32	3.0	32	85	5	117	43	2	0	54	1.12
83475--83530	16	3.5	16	71	9	51	46	0	0	53	1.00
83413--83563	65	2.4	62	80	9	144	41	1	0	57	1.07
83882--83940	25	2.4	25	81	13	70	64	0	1	33	1.04
83896--83943	19	2.5	19	86	3	69	68	0	0	31	0.90
83876--83940	15	4.2	14	75	16	58	64	0	1	33	1.03
85670--85728	29	2.0	29	84	12	77	71	1	8	18	1.20
86822--86865	15	2.9	15	79	3	52	79	0	2	18	0.83
90216--90286	28	2.6	28	86	2	90	23	19	33	22	1.97
90279--90401	50	2.4	51	78	9	135	36	10	22	30	1.88

Tables:   1

The End!