Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2436
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 265143
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
File 1 of 2
Found at i:3820 original size:314 final size:312
Alignment explanation
Indices: 3207--4019 Score: 785
Period size: 314 Copynumber: 2.6 Consensus size: 312
3197 CCACATGTTG
* * * * * *
3207 GGGCACTCGACGTGAAATC-GAATAGTCAATGGTTAGCTCTAATACTACTTGTCATGGGGCTATT
1 GGGCACTCAACATGAAATCAG-ACAGTCAAAGGTTAGCTCTAATACCACTTGTCATGGGGCCATT
* * * * * *
3271 ACCTTATTCTCAAAAGACATGCTTAATAGGATTTGCAG-AGCACCCACTTATATGTCTAAAGACT
65 ACCTTATTC-CCAAAGACATGCCTGATAGGATGTGCAGCA-CACCCACTTATATGTCCAAAGACC
* * * * * * *
3335 TTCTCTTTCTTATCCGATATGAGATTAATGCACACAACCTACTTCTTTAAAGCGTTTAGCATGAC
128 TTCTCTTTCTTGTCTGATATGAGATTAATGCAC-CTACCTACTTCTTTAGAGCATTTAACATAAC
* * * * * * *
3400 ATTCTCCCCTATCCAATCCCATGATGCTTCCATCACGATCCTCTCTACCATTTCAACTAACCTGC
192 ATTCTCCCCTACCCAATCCCATGACGCCTCCATCACAAGCCTCTCCACCATTTCAACCAACCTGC
** *** * * *
3465 TTTTGGGGCGTTTAGCATGGAGTCACGATAGGTCTACCTTACTTAGTCC-ACTCATTA
257 CCTCAAGGCGTTTAGCATGGACTCACGATAGGTCCACCTTACTTA--CCTACCCATTA
** ** * * *
3522 GGGTGCTTGACATGAAATCAGAGAGTCAAAGATTAGCTCTAATACCACTTGTCTTGGGGCCATTA
1 GGGCACTCAACATGAAATCAGACAGTCAAAGGTTAGCTCTAATACCACTTGTCATGGGGCCATTA
* * * *
3587 CTCTT-TTCCCAAATACATGCCTGATAGGATGTGCAGCACACCCACTTATATGCCCAAAAACCAT
66 C-CTTATTCCCAAAGACATGCCTGATAGGATGTGCAGCACACCCACTTATATGTCCAAAGACCTT
* * * *
3651 CTCTTTCTTGTCTAATATGCGATTAATGCACGCTGCCTACTT-TTTAGAGCATTTAACGTAACAT
130 CTCTTTCTTGTCTGATATGAGATTAATGCAC-CTACCTACTTCTTTAGAGCATTTAACATAACAT
* * * * * **
3715 TCTCTCCTACCCAATCTCGTGACGCCTCCATCTCAAGCTTCTCCACCATTTTTACCAACCTCGCC
194 TCTCCCCTACCCAATCCCATGACGCCTCCATCACAAGCCTCTCCACCATTTCAACCAACCT-GCC
* * * * * *
3780 CTCAAGGTGTTTGGCATGGACTCATGGTTGGTCCACCTTACTTACCTTACCCATTG
258 CTCAAGGCGTTTAGCATGGACTCACGATAGGTCCACCTTACTTACC-TACCCATTA
* * * *
3836 GGGCACTCAACATGAAATCAGACAGTCAAGGGTTGGCTCTGATACCACTTGTCATGAGGCCATTA
1 GGGCACTCAACATGAAATCAGACAGTCAAAGGTTAGCTCTAATACCACTTGTCATGGGGCCATTA
* * * * * *
3901 CCTTATTCCCAAAAGACATGCCTGAT-GAAATGTGAAACGCATCCGCTTATAT-TCCAAAGACCT
66 CCTTATTCCC-AAAGACATGCCTGATAG-GATGTGCAGCACACCCACTTATATGTCCAAAGACCT
* * *
3964 TCCCTTTCTTGTTTGATATAAGATTAATGCATCCTACCTACTTCTTTAGAGCATTT
129 TCTCTTTCTTGTCTGATATGAGATTAATGCA-CCTACCTACTTCTTTAGAGCATTT
4020 GGTGTGACAT
Statistics
Matches: 400, Mismatches: 87, Indels: 22
0.79 0.17 0.04
Matches are distributed among these distances:
312 2 0.00
313 67 0.17
314 224 0.56
315 103 0.26
316 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (312 bp):
GGGCACTCAACATGAAATCAGACAGTCAAAGGTTAGCTCTAATACCACTTGTCATGGGGCCATTA
CCTTATTCCCAAAGACATGCCTGATAGGATGTGCAGCACACCCACTTATATGTCCAAAGACCTTC
TCTTTCTTGTCTGATATGAGATTAATGCACCTACCTACTTCTTTAGAGCATTTAACATAACATTC
TCCCCTACCCAATCCCATGACGCCTCCATCACAAGCCTCTCCACCATTTCAACCAACCTGCCCTC
AAGGCGTTTAGCATGGACTCACGATAGGTCCACCTTACTTACCTACCCATTA
Found at i:7065 original size:153 final size:151
Alignment explanation
Indices: 6779--7233 Score: 474
Period size: 150 Copynumber: 3.0 Consensus size: 151
6769 CTAAAGGACT
** * * * * * *
6779 AAAG-TGAACCTATCCTAAATGCACACCACTGGCATAAAAACATCCTGAGGACAACATCGAACTC
1 AAAGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAATATCCCG-TGACTACTTAGAACTC
* * * * * ** * * * *
6843 AG-TTCTAAAAAAATTACTAAAATGCTCCTAA-GTATACCTTCAATGTAAAAGTATCTTGATAAC
65 GGCTT-TAGAAAAATTACTAAAATCCT-TTAAGGTATACTTTTGACGTGAAAGTATCTCGACAAC
* * *
6906 CTTAAAGGACATAAAAAGATTATAA
128 CCTAAAGAACATAAAAAG-GTATAA
*
6931 AAAGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAATATCCCGTGATTACTTAGAACTCG
1 AAAGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTCG
*
6996 GCTTTAGAAAAATTACTAAAATACCTTTAAGGTATACTTTTGACGTGAAAGTATCTCGGCAACCC
66 GCTTTAGAAAAATTACTAAAAT-CCTTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACCC
*
7061 TAAAGAACATGAAAATGGTATAA
130 TAAAGAACAT-AAAAAGGTATAA
* * *** * *
7084 AATGA-CATTTTTACCCTAAA---ATACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTC
1 AAAGATGA-ACCTATCCTAAATGCACACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTC
*
7145 GGCGTTAGAAAAATTACTAAAATGCCTTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACC
65 GGCTTTAGAAAAATTACTAAAAT-CCTTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACC
*
7210 CTAAAGAACATGAAAATGGTATAA
129 CTAAAGAACAT-AAAAAGGTATAA
7234 TATGACATTT
Statistics
Matches: 261, Mismatches: 36, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
150 125 0.48
152 37 0.14
153 94 0.36
154 5 0.02
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (151 bp):
AAAGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTCG
GCTTTAGAAAAATTACTAAAATCCTTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACCCT
AAAGAACATAAAAAGGTATAA
Found at i:7144 original size:150 final size:150
Alignment explanation
Indices: 6956--7252 Score: 549
Period size: 150 Copynumber: 2.0 Consensus size: 150
6946 CTAAATGCAC
* *
6956 ACCTTTGGCATAAAAATATCCCGTGATTACTTAGAACTCGGCTTTAGAAAAATTACTAAAATACC
1 ACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTCGGCGTTAGAAAAATTACTAAAATACC
*
7021 TTTAAGGTATACTTTTGACGTGAAAGTATCTCGGCAACCCTAAAGAACATGAAAATGGTATAAAA
66 TTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACCCTAAAGAACATGAAAATGGTATAAAA
7086 TGACATTTTTACCCTAAAAT
131 TGACATTTTTACCCTAAAAT
*
7106 ACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTCGGCGTTAGAAAAATTACTAAAATGCC
1 ACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTCGGCGTTAGAAAAATTACTAAAATACC
*
7171 TTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACCCTAAAGAACATGAAAATGGTATAATA
66 TTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACCCTAAAGAACATGAAAATGGTATAAAA
7236 TGACATTTTTACCCTAA
131 TGACATTTTTACCCTAA
7253 CTAGGTAGTT
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 142 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (150 bp):
ACCTTTGGCATAAAAATATCCCGTGACTACTTAGAACTCGGCGTTAGAAAAATTACTAAAATACC
TTTAAGGTATACTTTTGACGTGAAAGTATCTCGACAACCCTAAAGAACATGAAAATGGTATAAAA
TGACATTTTTACCCTAAAAT
Found at i:9078 original size:20 final size:19
Alignment explanation
Indices: 9013--9085 Score: 60
Period size: 20 Copynumber: 3.7 Consensus size: 19
9003 CTGCCAGTTT
* *
9013 TATGTATCGATACAATTCAG
1 TATGTATCGATACAA-GCAA
*
9033 TGTGTATCGATACCAAG--A
1 TATGTATCGATA-CAAGCAA
9051 TCATGTATCGATACTAAGCAA
1 T-ATGTATCGATAC-AAGCAA
*
9072 TATGTATCAATACA
1 TATGTATCGATACA
9086 TCTGGGTGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
18 2 0.05
19 14 0.33
20 22 0.51
21 5 0.12
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (19 bp):
TATGTATCGATACAAGCAA
Found at i:10908 original size:26 final size:26
Alignment explanation
Indices: 10878--10928 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10868 CATTGTCATT
10878 ATGCTCAAAATGAGCATTGCTAAGAA
1 ATGCTCAAAATGAGCATTGCTAAGAA
*
10904 ATGCTCAAAATGAGCATTGTTAAGA
1 ATGCTCAAAATGAGCATTGCTAAGA
10929 CAAGGTTCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (26 bp):
ATGCTCAAAATGAGCATTGCTAAGAA
Found at i:12667 original size:13 final size:13
Alignment explanation
Indices: 12649--12674 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12639 CAATTTTTTG
12649 TGTATCGATACAA
1 TGTATCGATACAA
12662 TGTATCGATACAA
1 TGTATCGATACAA
12675 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:12668 original size:33 final size:33
Alignment explanation
Indices: 12626--12694 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
12616 CGTTACAAGC
** *
12626 CAATGTATCGATACAATTTTTTGTGTATCGATA
1 CAATGTATCGATACAAACTTTGGTGTATCGATA
12659 CAATGTATCGATACAAACTTTGGTGTATCGATA
1 CAATGTATCGATACAAACTTTGGTGTATCGATA
12692 CAA
1 CAA
12695 GTTTGGCTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (33 bp):
CAATGTATCGATACAAACTTTGGTGTATCGATA
Found at i:12798 original size:20 final size:20
Alignment explanation
Indices: 12746--12800 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
12736 CATTTTTTTG
*
12746 ATGTATCGATACATTGCAAC
1 ATGTATCGATACTTTGCAAC
*
12766 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACTTTGCAA-C
12786 ATGTATCGATACTTT
1 ATGTATCGATACTTT
12801 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAC
Found at i:15254 original size:13 final size:13
Alignment explanation
Indices: 15236--15274 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
15226 ATAATCCCCT
* *
15236 TGTATCGATATAG
1 TGTATCGATACAA
15249 TGTATCGATACAA
1 TGTATCGATACAA
15262 TGTATCGATACAA
1 TGTATCGATACAA
15275 AGAAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:21549 original size:20 final size:20
Alignment explanation
Indices: 21497--21551 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
21487 CATATTTTTG
*
21497 ATGTATCGATACATTGCAAC
1 ATGTATCGATACTTTGCAAC
*
21517 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACTTTGCAA-C
21537 ATGTATCGATACTTT
1 ATGTATCGATACTTT
21552 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAC
Found at i:22684 original size:4 final size:4
Alignment explanation
Indices: 22677--22726 Score: 55
Period size: 4 Copynumber: 11.5 Consensus size: 4
22667 AAAAGAAATA
*
22677 AATT AATT AATT AAATAT AATT AATAT AATT AATT GATTT AATT AATT
1 AATT AATT AATT -AAT-T AATT AAT-T AATT AATT -AATT AATT AATT
22725 AA
1 AA
22727 AATATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 26 0.65
5 13 0.32
6 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (4 bp):
AATT
Found at i:22704 original size:9 final size:9
Alignment explanation
Indices: 22673--22710 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
22663 GTGGAAAAGA
22673 AATA-AATT
1 AATATAATT
22681 AAT-TAATT
1 AATATAATT
22689 AAATATAATT
1 -AATATAATT
22699 AATATAATT
1 AATATAATT
22708 AAT
1 AAT
22711 TGATTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 7 0.26
9 15 0.56
10 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATATAATT
Found at i:22710 original size:13 final size:13
Alignment explanation
Indices: 22673--22726 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
22663 GTGGAAAAGA
22673 AATA-AATTAATT
1 AATATAATTAATT
22685 AAT-TAAATATAATT
1 AATAT-AAT-TAATT
22699 AATATAATTAATT
1 AATATAATTAATT
* *
22712 GATTTAATTAATT
1 AATATAATTAATT
22725 AA
1 AA
22727 AATATATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
12 3 0.09
13 20 0.57
14 11 0.31
15 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (13 bp):
AATATAATTAATT
Found at i:23424 original size:20 final size:21
Alignment explanation
Indices: 23386--23425 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23376 AGAAAATTTT
* *
23386 AAAAATAATTCTAATTTTAAG
1 AAAAATAAGTCTAAATTTAAG
23407 AAAAATAAGT-TAAATTTAA
1 AAAAATAAGTCTAAATTTAA
23426 TATTTTACTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (21 bp):
AAAAATAAGTCTAAATTTAAG
Found at i:24233 original size:11 final size:12
Alignment explanation
Indices: 24209--24233 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24199 TTTTTAGTGT
24209 AAAAACTTTAAA
1 AAAAACTTTAAA
24221 AAAAACTTTAAA
1 AAAAACTTTAAA
24233 A
1 A
24234 GATCAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAACTTTAAA
Found at i:24256 original size:2 final size:2
Alignment explanation
Indices: 24249--24283 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
24239 ATTAAAATTC
24249 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24284 TAAAATCAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24521 original size:16 final size:16
Alignment explanation
Indices: 24493--24523 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
24483 CGAAATAACC
24493 CGAACCCAAAATGACT
1 CGAACCCAAAATGACT
24509 CGAACCCAAAATGAC
1 CGAACCCAAAATGAC
24524 CTAAATCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.32, G:0.13, T:0.10
Consensus pattern (16 bp):
CGAACCCAAAATGACT
Found at i:24550 original size:16 final size:16
Alignment explanation
Indices: 24479--24562 Score: 55
Period size: 16 Copynumber: 5.2 Consensus size: 16
24469 ACTAACCCAA
* *
24479 AACTCGAAATAACCCG
1 AACTCGAAATGACCTG
* *
24495 AACCCAAAATGA-CTCG
1 AACTCGAAATGACCT-G
* *
24511 AACCCAAAATGACCT-
1 AACTCGAAATGACCTG
* * *
24526 AAATCCGAAATTATCTG
1 AACT-CGAAATGACCTG
24543 AACTCGAAATGACCTG
1 AACTCGAAATGACCTG
24559 AACT
1 AACT
24563 TAAATTAAGT
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
15 3 0.06
16 44 0.85
17 5 0.10
ACGTcount: A:0.43, C:0.27, G:0.12, T:0.18
Consensus pattern (16 bp):
AACTCGAAATGACCTG
Found at i:25456 original size:15 final size:15
Alignment explanation
Indices: 25418--25449 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25408 AAAATTTTAA
*
25418 AACTCAAAATGATCT
1 AACTCAAAATAATCT
25433 AACTCAAAATAATCT
1 AACTCAAAATAATCT
25448 AA
1 AA
25450 TTTAAAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.25
Consensus pattern (15 bp):
AACTCAAAATAATCT
Found at i:28862 original size:2 final size:2
Alignment explanation
Indices: 28855--28886 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
28845 TTCATTTCAA
28855 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
28887 CTCAAAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:30574 original size:221 final size:221
Alignment explanation
Indices: 30191--30635 Score: 890
Period size: 221 Copynumber: 2.0 Consensus size: 221
30181 ACCAGTGACC
30191 TCAATTTCTTGGCATTGCTGAAGAGTTATGGACAGTTTTTAACGATACAGAAATGGCCTTGATTG
1 TCAATTTCTTGGCATTGCTGAAGAGTTATGGACAGTTTTTAACGATACAGAAATGGCCTTGATTG
30256 AATTTAAAAGATAGTACTAACCGATTTATGTGCAATGAATGTTAAAATCTATAGCATTAACTGCT
66 AATTTAAAAGATAGTACTAACCGATTTATGTGCAATGAATGTTAAAATCTATAGCATTAACTGCT
30321 GACTGCCATGGCTGAGTTATTGCTTTGGATACTTAAATTTACTGTCATGTCATGTGTCTTTCTCA
131 GACTGCCATGGCTGAGTTATTGCTTTGGATACTTAAATTTACTGTCATGTCATGTGTCTTTCTCA
30386 CCTGATGGCTGCTGCTAGCATGTAAT
196 CCTGATGGCTGCTGCTAGCATGTAAT
30412 TCAATTTCTTGGCATTGCTGAAGAGTTATGGACAGTTTTTAACGATACAGAAATGGCCTTGATTG
1 TCAATTTCTTGGCATTGCTGAAGAGTTATGGACAGTTTTTAACGATACAGAAATGGCCTTGATTG
30477 AATTTAAAAGATAGTACTAACCGATTTATGTGCAATGAATGTTAAAATCTATAGCATTAACTGCT
66 AATTTAAAAGATAGTACTAACCGATTTATGTGCAATGAATGTTAAAATCTATAGCATTAACTGCT
30542 GACTGCCATGGCTGAGTTATTGCTTTGGATACTTAAATTTACTGTCATGTCATGTGTCTTTCTCA
131 GACTGCCATGGCTGAGTTATTGCTTTGGATACTTAAATTTACTGTCATGTCATGTGTCTTTCTCA
30607 CCTGATGGCTGCTGCTAGCATGTAAT
196 CCTGATGGCTGCTGCTAGCATGTAAT
30633 TCA
1 TCA
30636 TTTATGATTA
Statistics
Matches: 224, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
221 224 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (221 bp):
TCAATTTCTTGGCATTGCTGAAGAGTTATGGACAGTTTTTAACGATACAGAAATGGCCTTGATTG
AATTTAAAAGATAGTACTAACCGATTTATGTGCAATGAATGTTAAAATCTATAGCATTAACTGCT
GACTGCCATGGCTGAGTTATTGCTTTGGATACTTAAATTTACTGTCATGTCATGTGTCTTTCTCA
CCTGATGGCTGCTGCTAGCATGTAAT
Found at i:31174 original size:2 final size:2
Alignment explanation
Indices: 31167--31191 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
31157 GGATTTGGTT
31167 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
31192 TGGTCCCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31956 original size:1 final size:1
Alignment explanation
Indices: 31950--31974 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
31940 AACTATTTTG
31950 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
31975 GCGAGAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:32906 original size:22 final size:22
Alignment explanation
Indices: 32878--32919 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32868 ATATGAATAA
* *
32878 GTTCACTTTTTTTAAAAGTTAT
1 GTTCACTTCTTTAAAAAGTTAT
32900 GTTCACTTCTTTAAAAAGTT
1 GTTCACTTCTTTAAAAAGTT
32920 TTTTTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.50
Consensus pattern (22 bp):
GTTCACTTCTTTAAAAAGTTAT
Found at i:41612 original size:2 final size:2
Alignment explanation
Indices: 41605--41635 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
41595 TGGCAATGGC
*
41605 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
41636 AAGAAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:48870 original size:23 final size:23
Alignment explanation
Indices: 48807--48870 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
48797 ATTAAATTAT
* * *
48807 AATAAATAATTTAAAAATATTTA
1 AATAAAAAATATAAATATATTTA
* *
48830 AATAAAAAACTGTAAAATATTTTTA
1 AATAAAAAA-TAT-AAATATATTTA
48855 AATAAAAAATATAAAT
1 AATAAAAAATATAAAT
48871 TTTATGAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
23 12 0.35
24 4 0.12
25 18 0.53
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (23 bp):
AATAAAAAATATAAATATATTTA
Found at i:50022 original size:13 final size:14
Alignment explanation
Indices: 49998--50026 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
49988 TTGTTAAGAA
49998 TTTTTCCACTATTT
1 TTTTTCCACTATTT
50012 TTTTTCC-CTATTT
1 TTTTTCCACTATTT
50025 TT
1 TT
50027 AAGCTATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTTCCACTATTT
Found at i:59938 original size:75 final size:75
Alignment explanation
Indices: 59813--59964 Score: 223
Period size: 75 Copynumber: 2.0 Consensus size: 75
59803 GATGAAACGA
* ** * *
59813 TAATCCGAGATAATCTGCATGATATTTACAATTAATAAATGTTTCAGCATATTTCACAATACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCAGCATATTTCACAATACTAC
59878 TATCAACAAC
66 TATCAACAAC
* * **
59888 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTGGTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCAGCATATTTCACAATACTAC
59953 TATCAACAAC
66 TATCAACAAC
59963 TA
1 TA
59965 TAATCAACAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (75 bp):
TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCAGCATATTTCACAATACTAC
TATCAACAAC
Found at i:60268 original size:27 final size:27
Alignment explanation
Indices: 60237--60292 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
60227 GGTTGTGGCG
** *
60237 GGATATGTTGGGTATGGAGGTTGAGTA
1 GGATATGACGGGTATGGAGATTGAGTA
60264 GGATATGACGGGTATGGAGATTGAGTA
1 GGATATGACGGGTATGGAGATTGAGTA
60291 GG
1 GG
60293 GAAATATAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.02, G:0.45, T:0.29
Consensus pattern (27 bp):
GGATATGACGGGTATGGAGATTGAGTA
Found at i:65110 original size:15 final size:14
Alignment explanation
Indices: 65090--65129 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
65080 TTATAGGCTT
65090 TAAACTAATTACCCC
1 TAAACTAATTA-CCC
*
65105 TAAACTAATTACGC
1 TAAACTAATTACCC
65119 TAAATCTAATT
1 TAAA-CTAATT
65130 CCACATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.33
Consensus pattern (14 bp):
TAAACTAATTACCC
Found at i:65386 original size:21 final size:21
Alignment explanation
Indices: 65346--65386 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
65336 GAATTTATAA
*
65346 AATTTTAGAGAGAAGTGAGAG
1 AATTTTAGAGAGAAGAGAGAG
* *
65367 AATTTTAGAGTGTAGAGAGA
1 AATTTTAGAGAGAAGAGAGA
65387 AAGTGAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.27
Consensus pattern (21 bp):
AATTTTAGAGAGAAGAGAGAG
Found at i:66984 original size:16 final size:15
Alignment explanation
Indices: 66964--67001 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
66954 TTTTTATAAT
66964 TTTTTATATAA-TTAA
1 TTTTTA-ATAACTTAA
66979 TATTTTAATAACTTAA
1 T-TTTTAATAACTTAA
66995 TTTTTAA
1 TTTTTAA
67002 ATTTAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTTAATAACTTAA
Found at i:67539 original size:19 final size:19
Alignment explanation
Indices: 67503--67543 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
67493 ATATTTTTAT
*
67503 ATAATATTTACCATTAAAA
1 ATAATATTTACAATTAAAA
67522 ATAATATTTA-AATATAAAA
1 ATAATATTTACAAT-TAAAA
67541 ATA
1 ATA
67544 TTTACATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAATATTTACAATTAAAA
Found at i:68534 original size:90 final size:90
Alignment explanation
Indices: 68381--68654 Score: 539
Period size: 90 Copynumber: 3.0 Consensus size: 90
68371 TTCAATGAAC
*
68381 CAAACTCACTATTAATGTTTTGACTTACTTCACATGGAACCAAAATATGTTATGCTTGTTATAGT
1 CAAACTTACTATTAATGTTTTGACTTACTTCACATGGAACCAAAATATGTTATGCTTGTTATAGT
68446 TGAATACTATGATTATGAGATAGGG
66 TGAATACTATGATTATGAGATAGGG
68471 CAAACTTACTATTAATGTTTTGACTTACTTCACATGGAACCAAAATATGTTATGCTTGTTATAGT
1 CAAACTTACTATTAATGTTTTGACTTACTTCACATGGAACCAAAATATGTTATGCTTGTTATAGT
68536 TGAATACTATGATTATGAGATAGGG
66 TGAATACTATGATTATGAGATAGGG
68561 CAAACTTACTATTAATGTTTTGACTTACTTCACATGGAACCAAAATATGTTATGCTTGTTATAGT
1 CAAACTTACTATTAATGTTTTGACTTACTTCACATGGAACCAAAATATGTTATGCTTGTTATAGT
68626 TGAATACTATGATTATGAGATAGGG
66 TGAATACTATGATTATGAGATAGGG
68651 CAAA
1 CAAA
68655 TGGACGCAAA
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 183 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (90 bp):
CAAACTTACTATTAATGTTTTGACTTACTTCACATGGAACCAAAATATGTTATGCTTGTTATAGT
TGAATACTATGATTATGAGATAGGG
Found at i:73357 original size:16 final size:16
Alignment explanation
Indices: 73338--73368 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73328 CAGAGAACTA
73338 TAAAAAGAAAAGAAAT
1 TAAAAAGAAAAGAAAT
*
73354 TAAAACGAAAAGAAA
1 TAAAAAGAAAAGAAA
73369 CAATTTTGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.03, G:0.13, T:0.10
Consensus pattern (16 bp):
TAAAAAGAAAAGAAAT
Found at i:74202 original size:21 final size:21
Alignment explanation
Indices: 74174--74302 Score: 127
Period size: 21 Copynumber: 5.9 Consensus size: 21
74164 ATACATGAAC
74174 AGTG-TGAACAGTGATGATAT
1 AGTGATGAACAGTGATGATAT
*
74194 AGTGATGAATAGTGATGATAT
1 AGTGATGAACAGTGATGATAT
* *
74215 AGTGATGAATAGTGATGATAC
1 AGTGATGAACAGTGATGATAT
74236 AGTGATGATACA-TGAAGGTGATAT
1 AGTGATGA-ACAGTG-A--TGATAT
*
74260 ATCGATACATGAACAGTGATGATAT
1 A--G-T-GATGAACAGTGATGATAT
*
74285 AGTGATGAATAGTGATGA
1 AGTGATGAACAGTGATGA
74303 ACAGTGAAAA
Statistics
Matches: 92, Mismatches: 7, Indels: 19
0.78 0.06 0.16
Matches are distributed among these distances:
20 4 0.04
21 58 0.63
22 4 0.04
23 1 0.01
24 6 0.07
25 7 0.08
26 1 0.01
27 5 0.05
28 6 0.07
ACGTcount: A:0.38, C:0.05, G:0.28, T:0.29
Consensus pattern (21 bp):
AGTGATGAACAGTGATGATAT
Found at i:74397 original size:53 final size:53
Alignment explanation
Indices: 74333--74469 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
74323 CTACTACCAA
*
74333 TGTATCGATACATATTTTGTGTATTGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
74386 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
74439 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
74470 TTTTCAGGGT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:74535 original size:21 final size:21
Alignment explanation
Indices: 74509--74549 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74499 GTCAACCTTG
74509 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
74530 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
74550 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:74987 original size:140 final size:142
Alignment explanation
Indices: 74824--75191 Score: 503
Period size: 140 Copynumber: 2.6 Consensus size: 142
74814 AGAGGATGCA
* * *
74824 AAAAGTTTTGAAAATTT-TAATACCCTTACGGAATATCATAGGAATATTAGAAATCTTGAAAAAC
1 AAAAGTTTTGAAGATTTCT-ATACCC-TACGGAAAATCATAGGAATATTAGAAATCTTGAAAAAT
*
74888 TAAGATAATAATTTTTATTTAATTTTTAA-TTT-T-AAAAAATTCATTTCATACCTTAATGGAGA
64 TAAGATAATAATTTTTATTTAATTTTTAATTTTCTAAAAAAATTCATTTCATACCTTAATAGAGA
* *
74950 ACTAAAAAGATACG
129 ACCAAAAAGATAAG
* * * *
74964 AAAAGTTTTGAAGATTTCTATACCCCTAAGGAAAATCACAAGAATATTAGAAATCTTGCAAAATT
1 AAAAGTTTTGAAGATTTCTATA-CCCTACGGAAAATCATAGGAATATTAGAAATCTTGAAAAATT
* * *
75029 GAGATAATAATTTTTATTTAATTTTTAATTTTCTAAAAAAAAATTCATTTCGTATCTTAATAGAG
65 AAGATAATAATTTTTATTTAATTTTTAATTTTCT--AAAAAAATTCATTTCATACCTTAATAGAG
*
75094 AACCGAAAAGATAAG
128 AACCAAAAAGATAAG
* * *
75109 AAAAGTTTTGAAGATTTCTATACCCTACAGAAAACCATAGG-ATATTTGAAATCTTGAAAAATTA
1 AAAAGTTTTGAAGATTTCTATACCCTACGGAAAATCATAGGAATATTAGAAATCTTGAAAAATTA
75173 AGATAATAATTTTTATTTA
66 AGATAATAATTTTTATTTA
75192 GTGATAAAAT
Statistics
Matches: 199, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
140 79 0.40
141 7 0.04
142 1 0.01
143 39 0.20
144 14 0.07
145 59 0.30
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.36
Consensus pattern (142 bp):
AAAAGTTTTGAAGATTTCTATACCCTACGGAAAATCATAGGAATATTAGAAATCTTGAAAAATTA
AGATAATAATTTTTATTTAATTTTTAATTTTCTAAAAAAATTCATTTCATACCTTAATAGAGAAC
CAAAAAGATAAG
Found at i:75223 original size:12 final size:12
Alignment explanation
Indices: 75206--75243 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
75196 TAAAATAATA
75206 TTTATTTATTAT
1 TTTATTTATTAT
75218 TTTATTTATT-T
1 TTTATTTATTAT
*
75229 TGTATTT-TTAT
1 TTTATTTATTAT
75240 TTTA
1 TTTA
75244 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 2 0.09
11 11 0.48
12 10 0.43
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTATTTATTAT
Found at i:75225 original size:16 final size:17
Alignment explanation
Indices: 75204--75241 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
75194 GATAAAATAA
75204 TATTTATTTAT-TA-TTT
1 TATTTATTT-TGTATTTT
75220 TATTTATTTTGTATTTT
1 TATTTATTTTGTATTTT
75237 TATTT
1 TATTT
75242 TAAAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.05
16 11 0.55
17 8 0.40
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TATTTATTTTGTATTTT
Found at i:76093 original size:13 final size:13
Alignment explanation
Indices: 76075--76120 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
76065 TGTTATTCTA
76075 TTTTCTCTTTTTT
1 TTTTCTCTTTTTT
76088 TTTTCT-TTCTTTT
1 TTTTCTCTT-TTTT
*
76101 TTTTCTCTCTTTT
1 TTTTCTCTTTTTT
*
76114 TTCTCTC
1 TTTTCTC
76121 CACTTGCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 2 0.07
13 26 0.90
14 1 0.03
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTCTCTTTTTT
Found at i:76102 original size:24 final size:24
Alignment explanation
Indices: 76070--76117 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
76060 TAGCTTGTTA
* *
76070 TTCTATTTTCTCTTTTTTTTTTCT
1 TTCTATTTTCTCTCTCTTTTTTCT
* *
76094 TTCTTTTTTTTCTCTCTTTTTTCT
1 TTCTATTTTCTCTCTCTTTTTTCT
76118 CTCCACTTGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (24 bp):
TTCTATTTTCTCTCTCTTTTTTCT
Found at i:80650 original size:21 final size:21
Alignment explanation
Indices: 80617--80661 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
80607 TTGCAAGTTG
*
80617 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
80639 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
80659 AAA
1 AAA
80662 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:82485 original size:15 final size:15
Alignment explanation
Indices: 82465--82495 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82455 TAAAAATGTC
*
82465 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
82480 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
82495 C
1 C
82496 CCAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:84593 original size:13 final size:13
Alignment explanation
Indices: 84575--84600 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84565 ACATTTTTCT
84575 TTGTATCGATACA
1 TTGTATCGATACA
84588 TTGTATCGATACA
1 TTGTATCGATACA
84601 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:84764 original size:20 final size:20
Alignment explanation
Indices: 84721--84766 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
84711 AAATCTTTTG
84721 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
84742 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
84762 CAAAA
1 CAAAA
84767 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:87171 original size:13 final size:13
Alignment explanation
Indices: 87153--87178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87143 TACAGCAAGT
87153 ATGTATCGATACA
1 ATGTATCGATACA
87166 ATGTATCGATACA
1 ATGTATCGATACA
87179 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:88855 original size:20 final size:21
Alignment explanation
Indices: 88814--88865 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
88804 CTTTCGATTT
88814 TATCGATACATGATTAAATTG
1 TATCGATACATGATTAAATTG
* *
88835 TATCAATACATGA-TGAATTG
1 TATCGATACATGATTAAATTG
88855 TATCGATACAT
1 TATCGATACAT
88866 ATGGCCCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (21 bp):
TATCGATACATGATTAAATTG
Found at i:90443 original size:3 final size:3
Alignment explanation
Indices: 90435--90460 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
90425 CCAAAGCGAA
90435 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
90461 GCAAGAGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:94450 original size:19 final size:19
Alignment explanation
Indices: 94405--94459 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
94395 GATTTTGTAG
*
94405 ATTGTATCGATACAATGAAA
1 ATTGTATCGATAC-ATTAAA
* *
94425 TTTGTATTGATACATTAAA
1 ATTGTATCGATACATTAAA
94444 ATTGTATCGATACATT
1 ATTGTATCGATACATT
94460 TCGACTATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 19 0.63
20 11 0.37
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (19 bp):
ATTGTATCGATACATTAAA
Found at i:95943 original size:16 final size:16
Alignment explanation
Indices: 95922--95962 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
95912 GATCAGCAGA
95922 TCGAGTCACAAAATAC
1 TCGAGTCACAAAATAC
95938 TCGAGTCACAAAATAC
1 TCGAGTCACAAAATAC
*
95954 TCGAATCAC
1 TCGAGTCAC
95963 CGCTATCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.41, C:0.27, G:0.12, T:0.20
Consensus pattern (16 bp):
TCGAGTCACAAAATAC
Found at i:96045 original size:18 final size:17
Alignment explanation
Indices: 96018--96062 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
96008 TGATTAGTCA
*
96018 TAGGATTAGTCACTATGT
1 TAGGAGTAGTCA-TATGT
* *
96036 TAGGAGTAGTCATGTTT
1 TAGGAGTAGTCATATGT
96053 TAGGAGTAGT
1 TAGGAGTAGT
96063 ACTTATGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.38
Consensus pattern (17 bp):
TAGGAGTAGTCATATGT
Found at i:97081 original size:20 final size:21
Alignment explanation
Indices: 97036--97092 Score: 89
Period size: 20 Copynumber: 2.8 Consensus size: 21
97026 TTATCGATAT
97036 ATTGTATCGATACATGATTAA
1 ATTGTATCGATACATGATTAA
* *
97057 ATTGTATCGATACGTGA-TGA
1 ATTGTATCGATACATGATTAA
97077 ATTGTATCGATACATG
1 ATTGTATCGATACATG
97093 TGGCCCAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
ATTGTATCGATACATGATTAA
Found at i:97895 original size:42 final size:42
Alignment explanation
Indices: 97797--97903 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
97787 GCTTACAAAC
* ***
97797 CGACAAGTCAACAAAGGATAAAAGAATTTTCCTAGGACTGAGT
1 CGACAAGTCAACAAAGGAT-AAAGAAGTAGACTAGGACTGAGT
* * * *
97840 CAACAGGTAAACAAAGGATAAAGAAGTAGACTAGGATTGA-T
1 CGACAAGTCAACAAAGGATAAAGAAGTAGACTAGGACTGAGT
97881 CTGACAAGTCAACAAAGGATAAA
1 C-GACAAGTCAACAAAGGATAAA
97904 AAGCAATACC
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
41 2 0.04
42 34 0.65
43 16 0.31
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.18
Consensus pattern (42 bp):
CGACAAGTCAACAAAGGATAAAGAAGTAGACTAGGACTGAGT
Found at i:98183 original size:37 final size:37
Alignment explanation
Indices: 98116--98186 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
98106 TGGTGGCAAC
*
98116 CGATACAGTCAAACGATAACAAAAAGGGTTTGACAAT
1 CGATACAGTCAAACAATAACAAAAAGGGTTTGACAAT
* *
98153 CGATACAGTCAAATAATAATGAAAAA-GGTTTGAC
1 CGATACAGTCAAACAATAA-CAAAAAGGGTTTGAC
98187 CAGGGTGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
37 25 0.83
38 5 0.17
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (37 bp):
CGATACAGTCAAACAATAACAAAAAGGGTTTGACAAT
Found at i:98229 original size:46 final size:46
Alignment explanation
Indices: 98154--98349 Score: 187
Period size: 46 Copynumber: 4.3 Consensus size: 46
98144 TTTGACAATC
* * * *
98154 GATACAGTCAAATAATAATGAAAAAGGTTTGACCAGGGTGATAACT
1 GATACGGTCAAATGATAATGAAAAGGGTTTGACTAGGGTGATAACT
* * * ** *
98200 GATATGGTTAAATGATAACGAAAAGGGTTTGACTAAAGTGATAATT
1 GATACGGTCAAATGATAATGAAAAGGGTTTGACTAGGGTGATAACT
*
98246 GATACGGTCAAATGATAATGAAAAGGGTTTGACTAGGGTAATAA-T
1 GATACGGTCAAATGATAATGAAAAGGGTTTGACTAGGGTGATAACT
* ** * ** * * *
98291 CAATACAATGAAATGATAGCGAAAAAGGTTTGACTAGGGTGGTAAAT
1 -GATACGGTCAAATGATAATGAAAAGGGTTTGACTAGGGTGATAACT
*
98338 GATACAGTCAAA
1 GATACGGTCAAA
98350 CGAGAATAAA
Statistics
Matches: 120, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
45 1 0.01
46 118 0.98
47 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (46 bp):
GATACGGTCAAATGATAATGAAAAGGGTTTGACTAGGGTGATAACT
Found at i:98314 original size:92 final size:92
Alignment explanation
Indices: 98154--98349 Score: 232
Period size: 92 Copynumber: 2.1 Consensus size: 92
98144 TTTGACAATC
* * *** *
98154 GATACAGTCAAATAATAATGAAAAAGGTTTGACCAGGGTGATAACTGATATGGTTAAATGATAAC
1 GATACAGTCAAATAATAATGAAAAAGGTTTGACCAGGGTAATAACTAATACAATGAAATGATAAC
* *
98219 GAAAAGGGTTTGACTAAAGTGATAATT
66 GAAAAAGGTTTGACTAAAGTGATAAAT
* * * * *
98246 GATACGGTCAAATGATAATGAAAAGGGTTTGACTAGGGTAATAA-TCAATACAATGAAATGATAG
1 GATACAGTCAAATAATAATGAAAAAGGTTTGACCAGGGTAATAACT-AATACAATGAAATGATAA
** *
98310 CGAAAAAGGTTTGACTAGGGTGGTAAAT
65 CGAAAAAGGTTTGACTAAAGTGATAAAT
98338 GATACAGTCAAA
1 GATACAGTCAAA
98350 CGAGAATAAA
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
91 1 0.01
92 85 0.99
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (92 bp):
GATACAGTCAAATAATAATGAAAAAGGTTTGACCAGGGTAATAACTAATACAATGAAATGATAAC
GAAAAAGGTTTGACTAAAGTGATAAAT
Found at i:99848 original size:9 final size:8
Alignment explanation
Indices: 99834--99880 Score: 58
Period size: 9 Copynumber: 5.5 Consensus size: 8
99824 CTATTTGTGT
99834 TTTTATTTA
1 TTTTA-TTA
99843 TTTTATTA
1 TTTTATTA
99851 TTATTATTA
1 TT-TTATTA
*
99860 TTTTGTTA
1 TTTTATTA
99868 TTATTATTA
1 TT-TTATTA
99877 TTTT
1 TTTT
99881 TTTGATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
8 14 0.41
9 20 0.59
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (8 bp):
TTTTATTA
Found at i:99853 original size:3 final size:3
Alignment explanation
Indices: 99840--99878 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
99830 GTGTTTTTAT
*
99840 TTA TT- TTA TTA TTA TTA TTA TT- TTG TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
99879 TTTTTGATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (3 bp):
TTA
Found at i:99862 original size:17 final size:17
Alignment explanation
Indices: 99840--99880 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
99830 GTGTTTTTAT
99840 TTATTTTATTATTATTA
1 TTATTTTATTATTATTA
*
99857 TTATTTTGTTATTATTA
1 TTATTTTATTATTATTA
99874 TTATTTT
1 TTATTTT
99881 TTTGATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
TTATTTTATTATTATTA
Found at i:99870 original size:20 final size:20
Alignment explanation
Indices: 99845--99884 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
99835 TTTATTTATT
99845 TTATTATTATTATTATTTTG
1 TTATTATTATTATTATTTTG
*
99865 TTATTATTATTATTTTTTTG
1 TTATTATTATTATTATTTTG
99885 ATTTTTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
TTATTATTATTATTATTTTG
Found at i:102824 original size:21 final size:21
Alignment explanation
Indices: 102784--102824 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102774 TTAAGTATAA
*
102784 ATATTTTTCAAGCTATAAATC
1 ATATTTTTCAAGCTAAAAATC
102805 ATATGTTTTCAAG-TAAAAAT
1 ATAT-TTTTCAAGCTAAAAAT
102825 AATCCAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (21 bp):
ATATTTTTCAAGCTAAAAATC
Found at i:103355 original size:34 final size:35
Alignment explanation
Indices: 103316--103389 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 35
103306 ATTTCCTACA
*
103316 TTTCAAAGAGCTTTTATATT-CTTTGTTG-TTATTC
1 TTTCAAAGAGCATTTATATTCCTTTG-TGCTTATTC
** *
103350 TTTCAAAGCTCATTTGTATTCCTTTGTGCTTATTC
1 TTTCAAAGAGCATTTATATTCCTTTGTGCTTATTC
103385 TTTCA
1 TTTCA
103390 TAAACACCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 18 0.53
35 16 0.47
ACGTcount: A:0.19, C:0.16, G:0.11, T:0.54
Consensus pattern (35 bp):
TTTCAAAGAGCATTTATATTCCTTTGTGCTTATTC
Found at i:109222 original size:33 final size:33
Alignment explanation
Indices: 109179--109244 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
109169 AAAACCCAAA
109179 TGTATCGATACT-ACGTTCTTAGTATCGATACAT
1 TGTATCGATACTGA-GTTCTTAGTATCGATACAT
* **
109212 TGTATTGATACTGAGTTCTTTTTATCGATACAT
1 TGTATCGATACTGAGTTCTTAGTATCGATACAT
109245 AGGTACTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (33 bp):
TGTATCGATACTGAGTTCTTAGTATCGATACAT
Found at i:111076 original size:30 final size:31
Alignment explanation
Indices: 111040--111101 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
111030 AAAGGGGGAG
*
111040 AGATGAAAAATGGAAGAAATA-TTTTGAAAT
1 AGATGAAAAAGGGAAGAAATATTTTTGAAAT
*
111070 AGATGAAAAAGGGGAGAAATATTTTTGAAAT
1 AGATGAAAAAGGGAAGAAATATTTTTGAAAT
111101 A
1 A
111102 AATTTGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 19 0.66
31 10 0.34
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.26
Consensus pattern (31 bp):
AGATGAAAAAGGGAAGAAATATTTTTGAAAT
Found at i:111207 original size:21 final size:22
Alignment explanation
Indices: 111178--111218 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
111168 AAAGAGCATT
111178 AAATATTTATTAAGGGGGAGAA
1 AAATATTTATTAAGGGGGAGAA
111200 AAAT-TTTATTAAGGGGGAG
1 AAATATTTATTAAGGGGGAG
111219 TTTTATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (22 bp):
AAATATTTATTAAGGGGGAGAA
Found at i:115543 original size:20 final size:20
Alignment explanation
Indices: 115497--115550 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
115487 TTCAACAATT
115497 TGTATCGATACAATAAGGTAA
1 TGTATCGATAC-ATAAGGTAA
*
115518 TATATCGATACATAA-GTGAA
1 TGTATCGATACATAAGGT-AA
115538 TGTATCGATACAT
1 TGTATCGATACAT
115551 GCTTGGAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 18 0.60
21 10 0.33
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGGTAA
Found at i:121396 original size:128 final size:132
Alignment explanation
Indices: 121206--121563 Score: 420
Period size: 140 Copynumber: 2.7 Consensus size: 132
121196 AAAAACTAGG
* * * *
121206 AGATACGAAAAGTTTTGAAAATTTCTATACATACCCCTACGAAAAACCATAAGAATATTAGAAAT
1 AGATACAAAAAGTTTTGAAGATTTC--T--ATACCCCTACGAAAAACTATAGGAATATTAGAAAT
*** * *
121271 CTTGAAAAATTAAGATAATAATTTTA-AA-TTTAA-AAAATTTATTTCA-TACTTTAATGGAGAA
62 CTTGAAAAATTAAGATAATAATTTTATAATTTTAATAAAAAAAAATTCAGTACTTCAATGGAGAA
121332 CCAAAA
127 CCAAAA
* *
121338 AGATATAAAAAGTTTTGAAGATTTCTATACCCCTATGAAAAACTATAGGAATATTAGAAATCTTG
1 AGATACAAAAAGTTTTGAAGATTTCTATACCCCTACGAAAAACTATAGGAATATTAGAAATCTTG
*
121403 AAAAATTAAGATAATAATTTTTATTTAATTTTTAATTTTCAAAAAAAAATTGAGTACTTCAATGG
66 AAAAATTAAGATAATAA-TTTTA--TAA-TTTTAA---T-AAAAAAAAATTCAGTACTTCAATGG
121468 AGAACCAAAA
123 AGAACCAAAA
* * *
121478 AGATACGAAAAGTTTTGAAGATTTCAATACCTCC-ACGGAAAACTATAGGAATATTAGAAATCTT
1 AGATACAAAAAGTTTTGAAGATTTCTATACC-CCTACGAAAAACTATAGGAATATTAGAAATCTT
*
121542 GAAAAATTAAAATAATAATTTT
65 GAAAAATTAAGATAATAATTTT
121564 TATTTAGTGA
Statistics
Matches: 195, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
128 53 0.27
129 5 0.03
130 1 0.01
132 24 0.12
134 5 0.03
139 12 0.06
140 93 0.48
141 2 0.01
ACGTcount: A:0.47, C:0.10, G:0.11, T:0.32
Consensus pattern (132 bp):
AGATACAAAAAGTTTTGAAGATTTCTATACCCCTACGAAAAACTATAGGAATATTAGAAATCTTG
AAAAATTAAGATAATAATTTTATAATTTTAATAAAAAAAAATTCAGTACTTCAATGGAGAACCAA
AA
Found at i:121474 original size:140 final size:140
Alignment explanation
Indices: 121317--121569 Score: 427
Period size: 140 Copynumber: 1.8 Consensus size: 140
121307 ATTTATTTCA
* * * *
121317 TACTTTAATGGAGAACCAAAAAGATATAAAAAGTTTTGAAGATTTCTATACC-CCTATGAAAAAC
1 TACTTCAATGGAGAACCAAAAAGATACAAAAAGTTTTGAAGATTTCAATACCTCC-ACGAAAAAC
*
121381 TATAGGAATATTAGAAATCTTGAAAAATTAAGATAATAATTTTTATTTAATTTTTAATTTTCAAA
65 TATAGGAATATTAGAAATCTTGAAAAATTAAAATAATAATTTTTATTTAATTTTTAATTTTCAAA
121446 AAAAAATTGAG
130 AAAAAATTGAG
* *
121457 TACTTCAATGGAGAACCAAAAAGATACGAAAAGTTTTGAAGATTTCAATACCTCCACGGAAAACT
1 TACTTCAATGGAGAACCAAAAAGATACAAAAAGTTTTGAAGATTTCAATACCTCCACGAAAAACT
121522 ATAGGAATATTAGAAATCTTGAAAAATTAAAATAATAATTTTTATTTA
66 ATAGGAATATTAGAAATCTTGAAAAATTAAAATAATAATTTTTATTTA
121570 GTGATAAAAT
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
140 103 0.98
141 2 0.02
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.33
Consensus pattern (140 bp):
TACTTCAATGGAGAACCAAAAAGATACAAAAAGTTTTGAAGATTTCAATACCTCCACGAAAAACT
ATAGGAATATTAGAAATCTTGAAAAATTAAAATAATAATTTTTATTTAATTTTTAATTTTCAAAA
AAAAATTGAG
Found at i:122269 original size:13 final size:13
Alignment explanation
Indices: 122251--122276 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
122241 TACAGCAAGT
122251 ATGTATCGATACA
1 ATGTATCGATACA
122264 ATGTATCGATACA
1 ATGTATCGATACA
122277 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:124538 original size:21 final size:21
Alignment explanation
Indices: 124505--124549 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
124495 TTGCAAGTTG
*
124505 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
124527 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
124547 AAA
1 AAA
124550 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:126373 original size:15 final size:15
Alignment explanation
Indices: 126353--126383 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
126343 TAAAAATGTC
*
126353 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
126368 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
126383 C
1 C
126384 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:128479 original size:13 final size:13
Alignment explanation
Indices: 128461--128486 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
128451 ATACATTTTC
128461 TTGTATCGATACA
1 TTGTATCGATACA
128474 TTGTATCGATACA
1 TTGTATCGATACA
128487 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:131061 original size:13 final size:13
Alignment explanation
Indices: 131043--131068 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
131033 TACAGCAAGT
131043 ATGTATCGATACA
1 ATGTATCGATACA
131056 ATGTATCGATACA
1 ATGTATCGATACA
131069 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:137690 original size:213 final size:213
Alignment explanation
Indices: 137286--137677 Score: 466
Period size: 213 Copynumber: 1.8 Consensus size: 213
137276 TTCCTCACTA
* * * * *
137286 TTAGTCTACCTGTCGGCTTTAACCTTGGAGACTTCCTCATGCTTAGTCTACTTGTCAGTTTTGAT
1 TTAGTCTACCTGTCAGCTTTAACCCTGCAGACTTCCTAATGCTTAGTCTACCTGTCAGTTTTGAT
* * * * * *
137351 CCTAGATACTTTCTCACCATTAGTCTACCTGTCGGCTTTGACTGTGGAGACTTCCCCACCTTTAG
66 CCTAGAGACTTTCTCACCATTAATCTACCTATCAGCTTTGACTGTAGAGACTTCCCCACCGTTAG
* * * * * *
137416 TCTGTTTGTTAGCTTTAACTCTAGAGACTTCCTTACCTTAAGTTTGCCTATCAACTTTAACCCTA
131 TCTATCTGTTAGCTTTAACCCTAGAGACATCCTTACCTTAAGTCTACCTATCAACTTTAACCCTA
137481 AAGATTTTCCAAACCTTC
196 AAGATTTTCCAAACCTTC
* * * *
137499 TTAGTCTACCTGTCAGCTTTGACCCTGCAGATTTCCTAACT-TTTAGTCTGCCTGTCAGTTTTGA
1 TTAGTCTACCTGTCAGCTTTAACCCTGCAGACTTCCTAA-TGCTTAGTCTACCTGTCAGTTTTGA
* * * ** * **
137563 TCCTGGAGAGTTTCTGACTTTTAATCTACCTATTAGCTTTGACCT-TAGAGACTTCCTTACCGTT
65 TCCTAGAGACTTTCTCACCATTAATCTACCTATCAGCTTTGA-CTGTAGAGACTTCCCCACCGTT
*
137627 AGTCTATCTGTTAGCTTTAACCCTTGAGACATCCTTATCCTT-AGTCTACCT
129 AGTCTATCTGTTAGCTTTAACCCTAGAGACATCCTTA-CCTTAAGTCTACCT
137678 GTCAGTTTTA
Statistics
Matches: 146, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
213 139 0.95
214 7 0.05
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (213 bp):
TTAGTCTACCTGTCAGCTTTAACCCTGCAGACTTCCTAATGCTTAGTCTACCTGTCAGTTTTGAT
CCTAGAGACTTTCTCACCATTAATCTACCTATCAGCTTTGACTGTAGAGACTTCCCCACCGTTAG
TCTATCTGTTAGCTTTAACCCTAGAGACATCCTTACCTTAAGTCTACCTATCAACTTTAACCCTA
AAGATTTTCCAAACCTTC
Found at i:138001 original size:169 final size:169
Alignment explanation
Indices: 137753--138095 Score: 371
Period size: 169 Copynumber: 2.0 Consensus size: 169
137743 CCCATTTTTT
* *
137753 AGTCTGCTTGTCAGCTTTAACTCTAAAGACTTCTTTACCTCAAGTCTGCCTATCAGCTTTGACAT
1 AGTCTGCTCGTCAGCTTTAACTCTAAAGACTTCTTCACCTCAAGTCTGCCTATCAGCTTTGACAT
* * * ** * *
137818 TGGAGACATTTTTACC-TTAG-GTTTGCT-TGTCGGCTTTGACCCTGGAGATTTCTTTA-CATCA
66 TAGAGACATTTTTACCTTTAGTG-TGGCTAT-T-AGCTTTGACCCTACAGACTTCCTTATC-TCA
* * *
137879 AGTCTGTTTGTCAGCTTT-AACCTTAGAGACTTTCTTACGCTCA
127 ACTCTGCTTGTCAGCTTTGAA-CTTAGAGACTTTCTTACCCTCA
* * * *
137922 AGTCTGCTCGTCATCTTTGACTCTAAAGAC-T-TTCACAC-CATTAGTCTGCTTATCGGCTTTGA
1 AGTCTGCTCGTCAGCTTTAACTCTAAAGACTTCTTCAC-CTCA--AGTCTGCCTATCAGCTTTGA
*
137984 C-TCTAGAGACTTTTTTACCTTTAGTGTGGCTATTAGCTTTGACCCTACAGACTTCCTTATCTCA
63 CAT-TAGAGACATTTTTACCTTTAGTGTGGCTATTAGCTTTGACCCTACAGACTTCCTTATCTCA
* *
138048 ACTCTGCTTGTCGGCTTTGAACTTGGAGACTTTCTTACCCTCA
127 ACTCTGCTTGTCAGCTTTGAACTTAGAGACTTTCTTACCCTCA
138091 AGTCT
1 AGTCT
138096 ACCTATCAAC
Statistics
Matches: 146, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
167 6 0.04
168 3 0.02
169 123 0.84
170 12 0.08
171 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (169 bp):
AGTCTGCTCGTCAGCTTTAACTCTAAAGACTTCTTCACCTCAAGTCTGCCTATCAGCTTTGACAT
TAGAGACATTTTTACCTTTAGTGTGGCTATTAGCTTTGACCCTACAGACTTCCTTATCTCAACTC
TGCTTGTCAGCTTTGAACTTAGAGACTTTCTTACCCTCA
Found at i:139229 original size:42 final size:42
Alignment explanation
Indices: 137258--143622 Score: 1739
Period size: 42 Copynumber: 150.9 Consensus size: 42
137248 AGTATTTGTT
* *
137258 AGCTTTGACCTTAGAGACTTCCTCA-CTATTAGTCTACCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCT-TTAGTCTGCCTGTC
* * * * * * *
137300 GGCTTTAACCTTGGAGACTTCCTCATGC-TTAGTCTACTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * * *
137342 AGTTTTGATCC-TAGATACTTTCTCACCATTAGTCTACCTGTC
1 AGCTTTGA-CCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * ** ** *
137384 GGCTTTGA-CTGTGGAGACTTCCCCACCTTTAGTCTGTTTGTT
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * *
137426 AGCTTT-AACTCTAGAGACTTCCTTACCTTAAGTTTGCCTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * ** *
137468 AACTTTAACCCTAAAGATTTTCCAAACCTTCTTAGTCTACCTGTC
1 AGCTTTGACCTTAGAGA-CTTCCTTACC-T-TTAGTCTGCCTGTC
* * * *
137513 AGCTTTGACCCT-GCAGATTTCCTAACTTTTAGTCTGCCTGTC
1 AGCTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * * * * *
137555 AGTTTTGATCC-TGGAGAGTTTCTGACTTTTAATCTACCTATT
1 AGCTTTGA-CCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* ** *
137597 AGCTTTGACCTTAGAGACTTCCTTACCGTTAGTCTATCTGTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * *
137639 AGCTTTAACCCTT-GAGACATCCTTATCC-TTAGTCTACCTGTC
1 AGCTTTGA-CCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * *
137681 AGTTTTAACCTTAGGGACTT-CTCACCATTAGTCTGCC-GATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTG-TC
* * ** ** *
137722 AGCTTTGACCGTGGAGACTTCCCCATTTTTTAGTCTGCTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * ** *
137765 AGCTTT-AACTCTAAAGACTTCTTTACCTCAAGTCTGCCTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * *
137807 AGCTTTGACATTGGAGACATT-TTTACC-TTAGGTTTGCTTGTC
1 AGCTTTGACCTTAGAGAC-TTCCTTACCTTTA-GTCTGCCTGTC
* * * * * * ** **
137849 GGCTTTGACCCTGGAGATTTCTTTACATCAAGTCTGTTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * **
137891 AGCTTTAACCTTAGAGACTTTCTTACGCTCAAGTCTG-CTCGTC
1 AGCTTTGACCTTAGAGACTTCCTTAC-CTTTAGTCTGCCT-GTC
* * * ** * * *
137934 ATCTTTGA-CTCTAAAGACTTTCACACCATTAGTCTGCTTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* ** * * * *
137976 GGCTTTGA-CTCTAGAGACTTTTTTACCTTTAGTGTGGCTATT
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * ** * *
138018 AGCTTTGACCCTACAGACTTCCTTATCTCAACTCTGCTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * ** * *
138060 GGCTTTGAACTTGGAGACTTTCTTACCCTCAAGTCTACCTATC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * * * *
138103 AACTTTGATCC-TAGAGAATTCCTGACCCTTATTCTACTTGTC
1 AGCTTTGA-CCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
138145 GGCTCTGACCTTGGAGACATCTTTACCTTTAGTCTGCTTGTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
138187 GGCTTTGACCCTAAAGACTT--TGTACTTTTAGTTTACCAGTC
1 AGCTTTGACCTTAGAGACTTCCT-TACCTTTAGTCTGCCTGTC
* * *
138228 -GACTTT-AGCCCTAGAGACTTCCTTACCCATAAGTCTGCCTGTC
1 AG-CTTTGA-CCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * ** * * * *
138271 AGCTTTAACCTTGGAGACTTATTTACCTTCAAGTCTTCCTTTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTT-TAGTCTGCCTGTC
* * * * * * *
138314 GGCTTTAACCCTAGAGACTTCCTCACTTTTAGACT-CCT-TAT
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGT-C
* * * * *
138355 AGGCTTTGACCCTAAAGACTTCCTCACCTTTAGTCTGCTTGTT
1 A-GCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
138398 GGCTTTGACCCTAAAGACATT--TTAACTTGTAGTCTACTTGTC
1 AGCTTTGACCTTAGAGAC-TTCCTTACCTT-TAGTCTGCCTGTC
* * *
138440 AGCTTCGACCTT-GAAGACTT-TTTCACCTTTAGTCTACCTGTC
1 AGCTTTGACCTTAG-AGACTTCCTT-ACCTTTAGTCTGCCTGTC
* * * * * *
138482 AACTTTGACCCTAGAGACTT-TTTACTTTTAGTTTGCTTGTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTG--TC
* * * * **
138525 GGCTTTGACCTTAGAGACTCCCTCACCATTAGTCTGCCCAT-
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
138566 AGGGTTTGACCGTGGAGAATTCCCTACCTTTAGTCTGCTTGTC
1 A-GCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
** * * *
138609 AGCTTT-AAGTCTAGAGACTTCCTTACCTTAAGT-TAACCTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCT-GCCTGTC
* * * * * **
138651 GGTTTTAACCTTAGAGATTTTCCTTACCATCTTAGTCTACC--AA
1 AGCTTTGACCTTAGAGA-CTTCCTTACC-T-TTAGTCTGCCTGTC
* ** * * *
138694 AGCTTTGACCTT-GCAGATTTCCAAACTTTTTGTTTGCCAT-TC
1 AGCTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCC-TGTC
* * * * **
138736 -GATTTTGACCCTAGAGACATT-CTAACTTTTAGTCTAACTGTC
1 AG-CTTTGACCTTAGAGAC-TTCCTTACCTTTAGTCTGCCTGTC
* * ** *
138778 GGCTTTGACCTTGGAGACTTTTTTACCATTAGTCTGCCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
138820 -GAATTTAACCCT-GAAGACTTCCTCATCC-TTAGTCTACTTGTT
1 AG-CTTTGACCTTAG-AGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * *
138862 AGCTTTGACCTTGGAAACTTCCTCACCATTAGTCTGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * ** * * *
138904 GGCTTTAAGTTTGGAGACTT-CTT-CATGCTTAGTCTACCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCT--TTAGTCTGCCTGTC
* * * * * * *
138946 -GACTTTGACCCTAAAGACTTTCTCACCATTAGTCTGCTTGTT
1 AG-CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * ** *
138988 GGCTTTGACCGT-GAAGACTTCCCCACCTTTAGTCTGCTTGTC
1 AGCTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
139030 AACTTT-AACTCTGGAGA-TATCCTTACCTTAAGTCTACCTATC
1 AGCTTTGACCT-TAGAGACT-TCCTTACCTTTAGTCTGCCTGTC
* * ** * *
139072 GGCTTTGA-CTCTAGAGATTTTCCAAACC-TTAGTCTACTTGTC
1 AGCTTTGACCT-TAGAGA-CTTCCTTACCTTTAGTCTGCCTGTC
* * * *
139114 AGCTTTGACCAT-GCAGATTTCCTAACTTTTAGTCTGCCTGTC
1 AGCTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * *
139156 AGTTTTGACTTTAGAGACATT--TTAACATTTAGTCTGCCTGTC
1 AGCTTTGACCTTAGAGAC-TTCCTT-ACCTTTAGTCTGCCTGTC
* * * *
139198 AGCTTTGACCTTGGAGACTTCCTTACCTTTAGTTTGCCTATT
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * *
139240 AGCTTTAACCCTAAAGACATCCTTATCC-TTA-----CCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * *
139277 AGCTTTGACCTTAGAGACTT-CTCACCATTAGTCTACTTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
139318 -GACTTTGATCGTGGAGACTTCCTCACCTTTAGTCTGCTTATC
1 AG-CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * ** * *
139360 AACTTT-AACTCTAAAGATTTCCTTACCTGAAGTCTGCTTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
** * * * * *
139402 AGCTTTGACAATAGAGACTTCCTTACC-TCAGGTTTTCTTGTG
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTA-GTCTGCCTGTC
* * * * * ** **
139444 GGCATTGA-CTCTGGAGACTTCTTTACATCAAGTCTGTTTGTC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * ** *
139486 AGCTTTAACCTTGGAGACTTACTTACACTCAAGTTTG-CTCGTC
1 AGCTTTGACCTTAGAGACTTCCTTAC-CTTTAGTCTGCCT-GTC
* * * ** * *
139529 ATCTTTGACCCTAGAAACTTCCGCACCATTAGTCTGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
139571 GGCTTTGACCCTAGAGGCTTCTTTACCTTTAGTGTGGCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * ** * * *
139613 AACTTTGACCTTAGAGACTTCTTTACCTCAACTCTACTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * ** * * *
139655 AGCTTTGAACTTGGAAACTTTCTTACCCTCAAATTTGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * * *
139698 GGCTTTGATCC-TCGAGAATT-CTTGACCCTTATTCTACCTGTC
1 AGCTTTGA-CCTTAGAGACTTCCTT-ACCTTTAGTCTGCCTGTC
* * * * * *
139740 GGCTTTGTCCTTGGAGACATCTTTACCTTTAGTCTGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
139782 GGTTTTGACCCTAGAGAGTT-TTTACTTTTAGTCTGCCAGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
***
139823 -GACTTTGACCTTAGAGACTTCCTTACCCACAAGTCTGCCTGTC
1 AG-CTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * ** * * *
139866 GGCTTTAACCTTGGAGACTTATTTACCTTCAAGTTTGCCT-TT
1 AGCTTTGACCTTAGAGACTTCCTTACCTT-TAGTCTGCCTGTC
* * * * *
139908 TGACTTTGACCCTAGAGACTT-CTTCACCTTTTGTCTCCCTATC
1 AG-CTTTGACCTTAGAGACTTCCTT-ACCTTTAGTCTGCCTGTC
* * * * * *
139951 GGCTTTGA-CTCAAGAGATTTCTTTACCTTTAGT-TCGCTTGTT
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCT-GCCTGTC
* * * * ** * *
139993 GGCTTTAACCTTTGAAACTTTCCTTACCTACTTAGTCTGTTTATT
1 AGCTTTGACCTTAGAGAC-TTCCTTACCT--TTAGTCTGCCTGTC
* * * ** *
140038 GGCTTTGACCCTAGAGACTTTCTTACACTCAAGTCTGCTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTAC-CTTTAGTCTGCCTGTC
* * * * * *** * *
140081 AGCTTTGACCCT-GAAAACTTGCTTACGTTAAGTCTATTTATT
1 AGCTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * * *
140123 GGCTTTGACCCTAGAGACTTCTTTAACTTTAGTCTGCCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * ** * **
140165 GGCTTTGACCCTGGAGACTTTTTTACCATATAGTCTGTTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACC-TTTAGTCTGCCTGTC
* * * * *
140208 -GACTTTGACCTTGGAGACTTCCTTACCTTAAACTCTGCATGTT
1 AG-CTTTGACCTTAGAGACTTCCTTACCTT-TAGTCTGCCTGTC
* * * ** *
140251 GGCTTTGACCCTAGAGGCTTCCTTACCCACTAGTCTACCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * ** * * * * *
140294 GGCTTTAACCATGGAGACTTATTTACCTTCAAGTTTGCTTTTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTT-TAGTCTGCCTGTC
* * * ** * *
140337 AGCTTTGACCCTAGAGACTTCCTCACCTTCAACCTCCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * *
140379 GGCTTTGACCTTGGAGATTTCCTCACCTTTAGTCTGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
140421 GGCTTCGA-CTTTGAAGA-TATTCTGACTTTTAGTCTACCTGTC
1 AGCTTTGACCTTAG-AGACT-TCCTTACCTTTAGTCTGCCTGTC
* * *
140463 -GACTTTGACCTTGGAGACTTCCTTACCTTTAGTATGCCTCTC
1 AG-CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * *
140505 GGCTTT-ATCCTTAGAGACTT-TTTACTTTTAGTCTACTTGTC
1 AGCTTTGA-CCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * *
140546 AGCTTTGAACTTAGAGACTTCCTTACCATTAGT-TGGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCT-GCCTGTC
* * * * * * * *
140588 AGCTTTAACTTTGGAGCCTTCATCATCC-TTAGTCTACCTATC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * *
140630 AGCTTTGACCCTAGAGACTTCCTCAACATTAGTCTGCCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
140672 GGCTTT-AACTGTAGAGACTTGCTCACTTTTAGTCTGCTTGTC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
140714 AACTTT-ATCTCTAGAGATTTCCTTACCTTAAGTTTACCTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
140756 GGCTTTAACCCTAGAGATTTTCCTAACCTTCTTAGTCTACCTGTC
1 AGCTTTGACCTTAGAGA-CTTCCTTACC-T-TTAGTCTGCCTGTC
** * * * * * * *
140801 AATTTTGGCCCTACAGATTTCCTAACTTTTAGTCTACCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * * *
140843 GGTTTTGACTTTAGAGACTTTCTGACTTTTAGTCTACATGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* *
140885 -GACTTTGACCTT-GCAGACTTCCTTACCTTTAGTATGCCTATC
1 AG-CTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
140927 AGATTTAACC-TCGAAGACTTCCTCATCC-TTAGTCTACTTGTC
1 AGCTTTGACCTTAG-AGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * **
140969 AGCTTTGACCTTGGAGACTTCCTTACCATTAGTCAACCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * ** * * *
141011 GGCTTTAACCTTGGAGACTTCCCCATGC-TTAGTCTACCTATC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * * * *
141053 GGTTTTGGTCC-TAGAGACTTTCTCACCATTAGTCTGCCTGTT
1 AGCTTT-GACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* ** * * * *
141095 GGCTTTGA-C-TATGCAGACTTCCCCACCTTTAATCTACTTATC
1 AGCTTTGACCTTA-G-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * *
141137 AGCTTT-AACTCTGGAGACTTCCTTACCTTAAGTCTGCTTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * ** * * * * *
141179 -GACTTTGACCCTAAAGATTTTCCAAACTTTCTTAATCTACCTATT
1 AG-CTTTGACCTTAGAGA-CTTCCTTAC-CT-TTAGTCTGCCTGTC
* * * * * *
141224 AGCTTTGACCTTACAGATTTCCTAACTTTTAATCTGCTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
141266 AG-TTTCAACCCTAGAGACTTTCTGACTTTTAGTTTGCCTATC
1 AGCTTT-GACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* *
141308 GGCTTTGACCTTAGAGAC-T--TT--CTTTAGTCTGCTTGT-
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * *
141344 GGACTTTAACCTTCA-AAACTT-CTTCATCC-TTAGTCTACTTGTTC
1 AG-CTTTGACCTT-AGAGACTTCCTT-A-CCTTTAGTCTGCCTG-TC
* * * *
141388 -GCTTTTATCTTGGAGACTTCCTTACCTTTAGTCTGCATGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * ** *
141429 -GACTTTAACCCTAAAGACTTCCTCATCC-TTA-TTTTACT-TAA
1 AG-CTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGT-C
* * * ***
141470 AGCTTTGACCTTGGAGACTTCTTTACCATCTAGTCTATTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACC-TTTAGTCTGCCTGTC
* * * * *
141513 -GACTTTAACCTTAGAGACTTTCTTACCTTCAACTCTGCCTGTT
1 AG-CTTTGACCTTAGAGACTTCCTTACCTT-TAGTCTGCCTGTC
* * * * ***
141556 GGCTTTGACCCTATAGACTT-TTCTACCCACAAGTCTGCCTGTC
1 AGCTTTGACCTTAGAGACTTCCT-TA-CCTTTAGTCTGCCTGTC
* * * ** * * * *
141599 GGCTTTAACCTTAAAGACTTATTTACCTTCAAGTCTTCCTTTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTT-TAGTCTGCCTGTC
* * * * * *
141642 GGCTTTGACCCTCGAGACTTCCTCA-CTATCAGCCTCT-CC-ATC
1 AGCTTTGACCTTAGAGACTTCCTTACCT-TTAG--TCTGCCTGTC
* * * * *
141684 AGTTTTGGCCCT-GAAGACTTTCTCACCTTTAGTCTGCCTGTC
1 AGCTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
141726 GGCTTTGACCTT-GAAGACATT-CTGACTTTTAGTTTGCTTTTC
1 AGCTTTGACCTTAG-AGAC-TTCCTTACCTTTAGTCTGCCTGTC
* * * *
141768 GGCTTTGACCTTAGAGACTTCTTTACCTTTAGTATGCCTCTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * *
141810 GGCTTTAACCTTAGAGACTT-TTTACTTTTAGTCTGCTTGTG
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * *
141851 GGCTTTGAACTTAGAGACTTCCTTACCTTTAGT-TGGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCT-GCCTGTC
* * * * *
141893 GGTTTTGA-CTCTAGAGACTTTCTGACTTTTAGTCTGCCTGTC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
*
141935 -GACTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTC
1 AG-CTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * *
141977 AGATTTAACC-TCGAAGACTTCCTTATCC-TTAGTCTACTTGTC
1 AGCTTTGACCTTAG-AGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * * *
142019 AGCTCTGACCTTGGAAACTTCCTCACCATTAATCTGCCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * ** *
142061 GGCTTTAACCTTGGAGACTTCCTTATGC-AAAGTCTACCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * * *
142103 GGCTTTGATCC-TAAAGACTTTCTCACCATTAGTCTGCCTGTT
1 AGCTTTGA-CCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * ** * *
142145 GGCTTTGA-CTGTGGAGACTTCCCCACCTTTAGTTTGCTTGTC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * **
142187 AGCTTT-AACTGTGGAGACTTCCTTGCCTTAAGTCTGCC-AAC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * ***
142228 AGATTTTGACCCTAAAGATTTTCAAAACCTTTTTAGTCTGCCTGTC
1 AG-CTTTGACCTTAGAGA-CTTCCTTACC--TTTAGTCTGCCTGTC
* ** * * * *
142274 AGCTTTGACCCTCCAGATTTCCTAACTTTTAGTCTGCTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* ** ** * * *
142316 AGTTTTGACCTCGGAGACTTTATGACTTTTAGTCTGCTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * *
142358 GGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
142400 -GACTTTAACCTT-GAAAACTT-CTTCATCTTTTGTTTACTTGTC
1 AG-CTTTGACCTTAG-AGACTTCCTT-ACCTTTAGTCTGCCTGTC
* * * * * * *
142442 GGCTTTAACATTGGAGACATCCTCACCCTTAGTCTGCCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * *
142484 -GCTTTGATCAT-GAGACTT--TTCCACCTTTAGTATGCTTGTC
1 AGCTTTGACCTTAGAGACTTCCTT--ACCTTTAGTCTGCCTGTC
* * * *
142524 AACTTT-AACTCTAGAGACTTCCTTACCTTAAGTCTGCCTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * * *
142566 GGCTTTGACCCTAAAGATTTTCCTAACCTTCTTGGTCTTCTTGTC
1 AGCTTTGACCTTAGAGA-CTTCCTTACC-T-TTAGTCTGCCTGTC
* * ** * * * *
142611 AGTTTTGACCTTATAG-CTTTTTTTAACTTTTAGTCTGCTTATT
1 AGCTTTGACCTTAGAGAC-TTCCTT-ACCTTTAGTCTGCCTGTC
* * * * ** * * *
142654 GGTTTTGACCCTGGAGACTTTTTTACTTTTAATCTACCTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * *
142696 AGCTTTGACCTTAGAGACTTCTTTTCCTTTATTCTGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * ** *
142738 -GACTTTAACCTT-GAAAACTTCCTCATCC-TTAGTCCACTTGTC
1 AG-CTTTGACCTTAG-AGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * *
142780 GGCTTTGACCTT-GAAGACTTCCTTACCTTTAGTTTGCCTGTT
1 AGCTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * * *
142822 AGCTTTAACCCTAAAGACTTCCTCATCC-TTAGTTTACTTATC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * **
142864 GGCTTTGACCTTAGAGACTTCTTTACCATCTAGTCTGTTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACC-TTTAGTCTGCCTGTC
* * * * * * * * *
142907 AACTTTGACCTTGGAGAATTCTTTCCCTTCAACTCTAG-CTTTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTT-TAGTCT-GCCTGTC
* * * *** * *
142950 GGCTTTGATCC-TAGAGATTTCTTTACCCACAAGTCTGTCTATC
1 AGCTTTGA-CCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * ** * * * * *
142993 GGCTTTAACCTTGGAGACTTATTTACCTTCAAGTTTTCCTTTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTT-TAGTCTGCCTGTC
* * * * * * * * *
143036 GGCTTTGACCCTGGAGACTTCCTCACCTTCAGCCTCCCTATT
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * *
143078 GGCCTTGACCTTAAAGACTTCCTCACCTTTAGTCTGCCTGTT
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* *
143120 GGCTTTGACCTT-GAAGACATT--TTGACTTTTAGTCTGCCTGTC
1 AGCTTTGACCTTAG-AGAC-TTCCTT-ACCTTTAGTCTGCCTGTC
* * * * * * *
143162 GGCTTTGACCTTGGAGGCTTCTTTACCTTTAGTATGCTTCTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * * * * * *
143204 GGCTTTGACCATAGAGACTT-TTTACTTTTAGTTTGCTTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
* * *
143245 AGCTTTGAACTTGGAGACTTCCTTACCTTTAGT-TGGCCTATC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCT-GCCTGTC
* * * * * * *
143287 AGCTTTAACTTTGGAGACTTCATCATCC-TTAGTCTACCTCTC
1 AGCTTTGACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTGTC
* * * * *
143329 AGCTTTGACCCTAGAGACTTCCTCA-ATATTAGACTTCCTG-C
1 AGCTTTGACCTTAGAGACTTCCTTACCT-TTAGTCTGCCTGTC
* ** * * * * *
143370 GGGCTTAAACCGTGGAGACTT--TTCCACTTTTAGTCTGCTTTTC
1 -AGCTTTGACCTTAGAGACTTCCTT--ACCTTTAGTCTGCCTGTC
* * * *
143413 AGCTTT-AACTCTAGAGACTTCCTTA-CTTTAAGTCCGTCTATC
1 AGCTTTGACCT-TAGAGACTTCCTTACCTTT-AGTCTGCCTGTC
* * * * * *
143455 TGCATTGACCCTAGAGA-TTCGCCTAACCTTCTTAGTCTACTTGTC
1 AGCTTTGACCTTAGAGACTT--CCTTACC-T-TTAGTCTGCCTGTC
* * * * * * *
143500 AACTTTGACCCTACAGATTTCC-TAACTTTCAGTCTACTTGTC
1 AGCTTTGACCTTAGAGACTTCCTTACCTTT-AGTCTGCCTGTC
* * * *
143542 GGTTTTGA-CTCTAGAGACATT-CTGACTTTTAGTCTGCCTGTC
1 AGCTTTGACCT-TAGAGAC-TTCCTTACCTTTAGTCTGCCTGTC
* *
143584 -GACTTTGACCTT-GAAGACTTCCTAACCTTTAGTTTGCCT
1 AG-CTTTGACCTTAG-AGACTTCCTTACCTTTAGTCTGCCT
143623 ATCAAATTTA
Statistics
Matches: 4667, Mismatches: 1329, Indels: 654
0.70 0.20 0.10
Matches are distributed among these distances:
35 2 0.00
36 8 0.00
37 43 0.01
38 3 0.00
39 3 0.00
40 52 0.01
41 390 0.08
42 2988 0.64
43 907 0.19
44 95 0.02
45 166 0.04
46 10 0.00
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.39
Consensus pattern (42 bp):
AGCTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTGTC
Found at i:139830 original size:41 final size:41
Alignment explanation
Indices: 139761--139983 Score: 133
Period size: 43 Copynumber: 5.3 Consensus size: 41
139751 TGGAGACATC
**
139761 TTTACCTTTAGTCTGCCTATCGGTTTTGACCCTAGAGAGTT
1 TTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGAGTT
* * *
139802 TTTACTTTTAGTCTGCC-AGTCGACTTTGACCTTAGAGACTT
1 TTTACCTTTAGTCTGCCTA-TCGACTTTGACCCTAGAGAGTT
* *** * * * * * *
139843 CCTTACCCACAAGTCTGCCTGTCGGCTTTAACCTTGGAGACTT
1 -TTTA-CCTTTAGTCTGCCTATCGACTTTGACCCTAGAGAGTT
* * * * *
139886 ATTTACCTTCAAGTTTGCCTTTTGACTTTGACCCTAGAGACTT
1 -TTTACCTT-TAGTCTGCCTATCGACTTTGACCCTAGAGAGTT
* * * * * * *
139929 CTTCACCTTTTGTCTCCCTATCGGCTTTGACTCAAGAGATTT
1 -TTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGAGTT
139971 CTTTACCTTTAGT
1 -TTTACCTTTAGT
139984 TCGCTTGTTG
Statistics
Matches: 138, Mismatches: 39, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
40 1 0.01
41 34 0.25
42 39 0.28
43 64 0.46
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.40
Consensus pattern (41 bp):
TTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGAGTT
Found at i:140200 original size:85 final size:85
Alignment explanation
Indices: 140025--140262 Score: 246
Period size: 85 Copynumber: 2.8 Consensus size: 85
140015 CTTACCTACT
* * *
140025 TAGTCTGTTTATTGGCTTTGACCCTAGAGACTT-TCTTACACTCAAGTCTGCTTGTCAGCTTTGA
1 TAGTCTGTTTATTGGCTTTGACCCTAGAGACTTCT-TTA-ACTTAAGTCTGCATGTCGGCTTTGA
**
140089 CCCTGAAAACTTGCTTACGTTA
64 CCCTGAAAACTTGCTTACCATA
* * *
140111 -AGTCTATTTATTGGCTTTGACCCTAGAGACTTCTTTAACTTTAGTCTGCCTGTCGGCTTTGACC
1 TAGTCTGTTTATTGGCTTTGACCCTAGAGACTTCTTTAACTTAAGTCTGCATGTCGGCTTTGACC
* * **
140175 CTGGAGACTTTTTTACCATA
66 CTGAAAACTTGCTTACCATA
* * * * * * * * *
140195 TAGTCTGTTTGTCGACTTTGACCTTGGAGACTTCCTTACCTTAAACTCTGCATGTTGGCTTTGAC
1 TAGTCTGTTTATTGGCTTTGACCCTAGAGACTTCTTTAACTT-AAGTCTGCATGTCGGCTTTGAC
140260 CCT
65 CCT
140263 AGAGGCTTCC
Statistics
Matches: 126, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
84 37 0.29
85 67 0.53
86 22 0.17
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (85 bp):
TAGTCTGTTTATTGGCTTTGACCCTAGAGACTTCTTTAACTTAAGTCTGCATGTCGGCTTTGACC
CTGAAAACTTGCTTACCATA
Found at i:140343 original size:129 final size:128
Alignment explanation
Indices: 140121--140365 Score: 305
Period size: 129 Copynumber: 1.9 Consensus size: 128
140111 AGTCTATTTA
* ** * * * *
140121 TTGGCTTTGACCCTAGAGACTTCTTTAACTTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTT
1 TTGGCTTTGACCCTAGAGACTTCCTTAACACTAGTCTACCTGTCGGCTTTAACCATGGAGACTTA
* * * *
140186 TTTACCATATAGTCTGTTTGTCGACTTTGACCTTGGAGACTTCCTTACCTTAAACTCTGCATG
66 TTTACCATATAGTCTGTTTGTAGACTTTGACCCTAGAGACTTCCTCACCTTAAACTCTGCATG
* *
140249 TTGGCTTTGACCCTAGAGGCTTCCTTACCCACTAGTCTACCTGTCGGCTTTAACCATGGAGACTT
1 TTGGCTTTGACCCTAGAGACTTCCTTA-ACACTAGTCTACCTGTCGGCTTTAACCATGGAGACTT
* * *
140314 ATTTACCTTCA-AGTTTGCTTTTTAG-CTTTGACCCTAGAGACTTCCTCACCTT
65 ATTTACCAT-ATAGTCTG-TTTGTAGACTTTGACCCTAGAGACTTCCTCACCTT
140366 CAACCTCCCT
Statistics
Matches: 98, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
128 25 0.26
129 67 0.68
130 6 0.06
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (128 bp):
TTGGCTTTGACCCTAGAGACTTCCTTAACACTAGTCTACCTGTCGGCTTTAACCATGGAGACTTA
TTTACCATATAGTCTGTTTGTAGACTTTGACCCTAGAGACTTCCTCACCTTAAACTCTGCATG
Found at i:140383 original size:214 final size:213
Alignment explanation
Indices: 139825--140399 Score: 622
Period size: 214 Copynumber: 2.7 Consensus size: 213
139815 TGCCAGTCGA
* *
139825 CTTTGACCTTAGAGACTTCCTTACCCACAAGTCTGCCTGTCGGCTTTAACCTTGGAGACTTATTT
1 CTTTGACCCTAGAGACTTCCTTACCCACAAGTCTGCCTGTCGGCTTTAACCATGGAGACTTATTT
* *
139890 ACCTTCAAGTTTGCCTTTTGACTTTGACCCTAGAGACTTCTTCACCTTTTGTCTCCCTATCGGCT
66 ACCTTCAAGTTTGCTTTTTG-CTTTGACCCTAGAGACTTCTTCACCTTTAGTCTCCCTATCGGCT
* ** * * * *
139955 TTGACTCAAGAGATTTCTTTACCTTTAGTTCGCTTGTTGGCTTTAACCTTTGAAACTTTCCTTAC
130 TTGACCCTGGAGATTTCTTTACCTATAGTTCGCTTGTCGACTTTAACCTTGGAAACTTTCCTTAC
* * **
140020 CTACTTAGTCTGTTTATTGG
195 CTAC-AACTCTGCATATTGG
* * * * * * * * * **
140040 CTTTGACCCTAGAGACTTTCTTACACTCAAGTCTGCTTGTCAGCTTTGACCCTGAAAACTTGCTT
1 CTTTGACCCTAGAGACTTCCTTACCCACAAGTCTGCCTGTCGGCTTTAACCATGGAGACTTATTT
* * * * * * *
140105 ACGTT-AAGTCT-ATTTATTGGCTTTGACCCTAGAGACTTCTTTAACTTTAGTCTGCCTGTCGGC
66 ACCTTCAAGTTTGCTTT-TT-GCTTTGACCCTAGAGACTTCTTCACCTTTAGTCTCCCTATCGGC
* * *
140168 TTTGACCCTGGAGACTTT-TTTACCATATAG-TCTGTTTGTCGACTTTGACCTTGGAGAC-TTCC
129 TTTGACCCTGGAGA-TTTCTTTACC-TATAGTTC-GCTTGTCGACTTTAACCTTGGAAACTTTCC
*
140230 TTACCTTA-AACTCTGCATGTTGG
191 TTACC-TACAACTCTGCATATTGG
* * *
140253 CTTTGACCCTAGAGGCTTCCTTACCCACTAGTCTACCTGTCGGCTTTAACCATGGAGACTTATTT
1 CTTTGACCCTAGAGACTTCCTTACCCACAAGTCTGCCTGTCGGCTTTAACCATGGAGACTTATTT
* * **
140318 ACCTTCAAGTTTGCTTTTTAGCTTTGACCCTAGAGACTTCCTCACCTTCAACCTCCCTATCGGCT
66 ACCTTCAAGTTTGCTTTTT-GCTTTGACCCTAGAGACTTCTTCACCTTTAGTCTCCCTATCGGCT
*
140383 TTGACCTTGGAGATTTC
130 TTGACCCTGGAGATTTC
140400 CTCACCTTTA
Statistics
Matches: 288, Mismatches: 63, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
213 70 0.24
214 129 0.45
215 89 0.31
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (213 bp):
CTTTGACCCTAGAGACTTCCTTACCCACAAGTCTGCCTGTCGGCTTTAACCATGGAGACTTATTT
ACCTTCAAGTTTGCTTTTTGCTTTGACCCTAGAGACTTCTTCACCTTTAGTCTCCCTATCGGCTT
TGACCCTGGAGATTTCTTTACCTATAGTTCGCTTGTCGACTTTAACCTTGGAAACTTTCCTTACC
TACAACTCTGCATATTGG
Found at i:140909 original size:171 final size:171
Alignment explanation
Indices: 140615--141019 Score: 401
Period size: 171 Copynumber: 2.4 Consensus size: 171
140605 CTTCATCATC
* * *
140615 CTTAGTCTACCTATCAGCTTTGACCCTAGAGACTTCCTCAACATTAGTCTGCCTGTCGGCTTTAA
1 CTTAGTCTACCTATCAACTTTGACCCTACAGACTTCCTCAACATTAGTCTACCTGTCGGCTTTAA
* * *
140680 CTGTAGAGACTTGCTCACTTTTAGTCTGCTTGTCAACTTTATCTCTAGAGATTTCCTTACCTTAA
66 CTGTAGAGACTTGCTCACTTTTAGTCTACATGTCAACTTTATCTCTAGAGACTTCCTTACCTTAA
* * *
140745 GTTTACCTATCGGCTTTAACCCTAGAGATTTTCCTAACCTT
131 GTATACCTATCAGATTTAACCCTAGAGATTTTCCTAACCTT
* * * * * * *
140786 CTTAGTCTACCTGTCAATTTTGGCCCTACAGATTTCCT-AACTTTTAGTCTACCTGTCGGTTTTG
1 CTTAGTCTACCTATCAACTTTGACCCTACAGACTTCCTCAAC-ATTAGTCTACCTGTCGGCTTTA
* * * * *
140850 ACTTTAGAGACTTTCTGACTTTTAGTCTACATGTCGACTTTGA-C-CTTGCAGACTTCCTTACCT
65 ACTGTAGAGACTTGCTCACTTTTAGTCTACATGTCAACTTT-ATCTCTAG-AGACTTCCTTACCT
* * * * * *
140913 TTAGTATGCCTATCAGATTTAA-CCTCGAAGA-CTTCCT--CATC
128 TAAGTATACCTATCAGATTTAACCCTAG-AGATTTTCCTAACCTT
* * * * ** * * *
140954 CTTAGTCTACTTGTCAGCTTTGACCTTGGAGACTTCCTTACCATTAGTCAACCTGTCGGCTTTAA
1 CTTAGTCTACCTATCAACTTTGACCCTACAGACTTCCTCAACATTAGTCTACCTGTCGGCTTTAA
141019 C
66 C
141020 CTTGGAGACT
Statistics
Matches: 189, Mismatches: 40, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
168 52 0.28
169 2 0.01
170 15 0.08
171 119 0.63
172 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (171 bp):
CTTAGTCTACCTATCAACTTTGACCCTACAGACTTCCTCAACATTAGTCTACCTGTCGGCTTTAA
CTGTAGAGACTTGCTCACTTTTAGTCTACATGTCAACTTTATCTCTAGAGACTTCCTTACCTTAA
GTATACCTATCAGATTTAACCCTAGAGATTTTCCTAACCTT
Found at i:141199 original size:423 final size:421
Alignment explanation
Indices: 140393--141490 Score: 1171
Period size: 423 Copynumber: 2.6 Consensus size: 421
140383 TTGACCTTGG
* * * *
140393 AGATTTCCTCACCTTTAGTCTGCCTATCGGCTTCGACTTT-GAAGA-TATTCTGACTTTTAGTCT
1 AGATTTCCTAACTTTTAGTCTGCCTGTCGGTTTCGACTTTAG-AGACT-TTCTGACTTTTAGTCT
* * * *
140456 ACCTGTCGACTTTGACCTTGGAGACTTCCTTACCTTTAGTATGCCTCTCGGCTTTATCCTTAGAG
64 ACCTGTCGACTTTGACCTT-GAGACTTCCTTACCTTTAGTATGCCTATCGGATTTAACCTCA-AG
* * * **
140521 ACTT-TTTA-CTTTTAGTCTACTTGTCAGCTTTGAACTTAGAGACTTCCTTACCATTAGTTGGCC
127 ACTTCTTCATC-CTTAGTCTACTTGTCAGCTTTGAACTTGGAGACTTCCTTACCATTAGTCAGCC
* * * * *
140584 TATCAGCTTTAACTTTGGAGCCTTCATCATCCTTAGTCTACCTATCAGCTTTGACCCTAGAGACT
191 TGTCGGCTTTAACCTTGGAGACTTCACCATCCTTAGTCTACCTATCAGCTTTGACCCTAGAGACT
* * * * * * *
140649 TCCTCAACATTAGTCTGCCTGTCGGCTTTAACTGTAGAGACTTGCTCACTTTTAGTCTGCTTGTC
256 TCCTCAACATTAGTCTGCCTGTCGGCTTTAACTATAGAGACTTCCCCACCTTTAATCTACTTATC
* * * * *
140714 AACTTTATCTCTAGAGATTTCCTTACCTTAAGTTTACCTATCGGCTTTAACCCTAGAGATTTTCC
321 AACTTTAACTCTAGAGACTTCCTTACCTTAAGTCTACCTATCGACTTTAACCCTAAAGATTTTCC
* * * * *
140779 TAACCTTCTTAGTCTACCTGTCAATTTTGGCCCTAC
386 AAACCTTCTTAATCTACCTATCAACTTTGACCCTAC
* *
140815 AGATTTCCTAACTTTTAGTCTACCTGTCGGTTTTGACTTTAGAGACTTTCTGACTTTTAGTCTAC
1 AGATTTCCTAACTTTTAGTCTGCCTGTCGGTTTCGACTTTAGAGACTTTCTGACTTTTAGTCTAC
* *
140880 ATGTCGACTTTGACCTTGCAGACTTCCTTACCTTTAGTATGCCTATCAGATTTAACCTCGAAGAC
66 CTGTCGACTTTGACCTTG-AGACTTCCTTACCTTTAGTATGCCTATCGGATTTAACCTC-AAGAC
* * *
140945 TTCCTCATCCTTAGTCTACTTGTCAGCTTTGACCTTGGAGACTTCCTTACCATTAGTCAACCTGT
129 TTCTTCATCCTTAGTCTACTTGTCAGCTTTGAACTTGGAGACTTCCTTACCATTAGTCAGCCTGT
* * * * ** *
141010 CGGCTTTAACCTTGGAGACTTCCCCATGCTTAGTCTACCTATCGGTTTTGGTCCTAGAGACTTTC
194 CGGCTTTAACCTTGGAGACTTCACCATCCTTAGTCTACCTATCAGCTTTGACCCTAGAGACTTCC
* * * *
141075 TCACCATTAGTCTGCCTGTTGGCTTTGACTAT-GCAGACTTCCCCACCTTTAATCTACTTATCAG
259 TCAACATTAGTCTGCCTGTCGGCTTTAACTATAG-AGACTTCCCCACCTTTAATCTACTTATCAA
* * * *
141139 CTTTAACTCTGGAGACTTCCTTACCTTAAGTCTGCTTATCGACTTTGACCCTAAAGATTTTCCAA
323 CTTTAACTCTAGAGACTTCCTTACCTTAAGTCTACCTATCGACTTTAACCCTAAAGATTTTCCAA
* * * *
141204 ACTTTCTTAATCTACCTATTAGCTTTGACCTTAC
388 ACCTTCTTAATCTACCTATCAACTTTGACCCTAC
* * * * ** * *
141238 AGATTTCCTAACTTTTAATCTGCTTGTCAGTTTCAACCCTAGAGACTTTCTGACTTTTAGTTTGC
1 AGATTTCCTAACTTTTAGTCTGCCTGTCGGTTTCGACTTTAGAGACTTTCTGACTTTTAGTCTAC
* * * * * *
141303 CTATCGGCTTTGACCTTAGAGAC-T--TT--CTTTAGTCTGCTTGT-GGACTTTAACCTTCAAAA
66 CTGTCGACTTTGACCTT-GAGACTTCCTTACCTTTAGTATGCCTATCGGA-TTTAACC-TCAAGA
* * * * *
141362 CTTCTTCATCCTTAGTCTACTTGTTC-GCTTTTATCTTGGAGACTTCCTTACCTTTAGTCTGCAT
128 CTTCTTCATCCTTAGTCTACTTG-TCAGCTTTGAACTTGGAGACTTCCTTACCATTAGTCAGCCT
* * ** * * * * * *
141426 GTCGACTTTAACCCTAAAGACTTC-CTCATCCTTATTTTACTTA-AAGCTTTGACCTTGGAGACT
192 GTCGGCTTTAACCTTGGAGACTTCAC-CATCCTTAGTCTACCTATCAGCTTTGACCCTAGAGACT
141489 TC
256 TC
141491 TTTACCATCT
Statistics
Matches: 562, Mismatches: 102, Indels: 29
0.81 0.15 0.04
Matches are distributed among these distances:
417 17 0.03
418 109 0.19
419 4 0.01
420 2 0.00
421 1 0.00
422 114 0.20
423 313 0.56
424 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (421 bp):
AGATTTCCTAACTTTTAGTCTGCCTGTCGGTTTCGACTTTAGAGACTTTCTGACTTTTAGTCTAC
CTGTCGACTTTGACCTTGAGACTTCCTTACCTTTAGTATGCCTATCGGATTTAACCTCAAGACTT
CTTCATCCTTAGTCTACTTGTCAGCTTTGAACTTGGAGACTTCCTTACCATTAGTCAGCCTGTCG
GCTTTAACCTTGGAGACTTCACCATCCTTAGTCTACCTATCAGCTTTGACCCTAGAGACTTCCTC
AACATTAGTCTGCCTGTCGGCTTTAACTATAGAGACTTCCCCACCTTTAATCTACTTATCAACTT
TAACTCTAGAGACTTCCTTACCTTAAGTCTACCTATCGACTTTAACCCTAAAGATTTTCCAAACC
TTCTTAATCTACCTATCAACTTTGACCCTAC
Found at i:141660 original size:43 final size:42
Alignment explanation
Indices: 141515--141661 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 42
141505 TATTTGTCGA
* * *
141515 CTTTAACCTTAGAGACTTTCTTACCTTCAACTCTGCCTGTTGG
1 CTTTGACCCTAGAGACTTT-TTACCTTCAAGTCTGCCTGTTGG
* ** *
141558 CTTTGACCCTATAGACTTTTCTACCCACAAGTCTGCCTGTCGG
1 CTTTGACCCTAGAGACTTTT-TACCTTCAAGTCTGCCTGTTGG
* * * * *
141601 CTTTAACCTTAAAGACTTATTTACCTTCAAGTCTTCCTTTTGG
1 CTTTGACCCTAGAGACTT-TTTACCTTCAAGTCTGCCTGTTGG
*
141644 CTTTGACCCTCGAGACTT
1 CTTTGACCCTAGAGACTT
141662 CCTCACTATC
Statistics
Matches: 83, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
42 1 0.01
43 80 0.96
44 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.14, T:0.38
Consensus pattern (42 bp):
CTTTGACCCTAGAGACTTTTTACCTTCAAGTCTGCCTGTTGG
Found at i:142956 original size:43 final size:42
Alignment explanation
Indices: 142864--143052 Score: 114
Period size: 43 Copynumber: 4.4 Consensus size: 42
142854 TTTACTTATC
* * * * *
142864 GGCTTTGACCTTAGAGACTTCTTTACCATCTAGTCTG-TTTGT
1 GGCTTTGACCTTGGAGAATTCTTTCCCTTCAAGTCTGCTTT-T
** *
142906 CAACTTTGACCTTGGAGAATTCTTTCCCTTCAACTCTAGCTTTT
1 -GGCTTTGACCTTGGAGAATTCTTTCCCTTCAAGTCT-GCTTTT
* * * * *
142950 GGCTTTGATCC-TAGAGATTTCTTTACCC-ACAAGTCTGTCTATC
1 GGCTTTGA-CCTTGGAGAATTCTTT-CCCTTCAAGTCTG-CTTTT
* * * * * *
142993 GGCTTTAACCTTGGAGACTTATTTACCTTCAAGTTTTCCTTTT
1 GGCTTTGACCTTGGAGAATTCTTTCCCTTCAAG-TCTGCTTTT
*
143036 GGCTTTGACCCTGGAGA
1 GGCTTTGACCTTGGAGA
143053 CTTCCTCACC
Statistics
Matches: 110, Mismatches: 28, Indels: 16
0.71 0.18 0.10
Matches are distributed among these distances:
42 5 0.05
43 93 0.85
44 9 0.08
45 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (42 bp):
GGCTTTGACCTTGGAGAATTCTTTCCCTTCAAGTCTGCTTTT
Found at i:143009 original size:86 final size:85
Alignment explanation
Indices: 142864--143056 Score: 208
Period size: 86 Copynumber: 2.2 Consensus size: 85
142854 TTTACTTATC
* * * * *
142864 GGCTTTGACCTTAGAGACTTCTTTACCATCTAGTCTGTTTGTCAACTTTGACCTTGGAGAATTCT
1 GGCTTTGACC-TAGAGACTTCTTTACCATCAAGTCTGTCTATCAACTTTAACCTTGGAGAATTAT
* *
142929 TTCCCTTCAACTCTAGCTTTT
65 TTACCTTCAACTCTACCTTTT
* ** *
142950 GGCTTTGATCCTAGAGATTTCTTTACCCA-CAAGTCTGTCTATCGGCTTTAACCTTGGAGACTTA
1 GGCTTTGA-CCTAGAGACTTCTTTA-CCATCAAGTCTGTCTATCAACTTTAACCTTGGAGAATTA
* * *
143014 TTTACCTTCAAGTTTTCCTTTT
64 TTTACCTTCAACTCTACCTTTT
*
143036 GGCTTTGACCCTGGAGACTTC
1 GGCTTTGA-CCTAGAGACTTC
143057 CTCACCTTCA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
86 83 0.94
87 5 0.06
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (85 bp):
GGCTTTGACCTAGAGACTTCTTTACCATCAAGTCTGTCTATCAACTTTAACCTTGGAGAATTATT
TACCTTCAACTCTACCTTTT
Found at i:143304 original size:83 final size:83
Alignment explanation
Indices: 143092--143306 Score: 225
Period size: 83 Copynumber: 2.6 Consensus size: 83
143082 TTGACCTTAA
* * * * *
143092 AGACTTCCTCACCTTTAGTCTGCCTGTTGGCTTTGACCTTGAAGACATTTTGACTTTTAGTCTGC
1 AGACTTCCTTACCTTTAGTATGCCTATCGGCTTTGACCTTGGAGAC-TTTTGACTTTTAGTCTGC
* * *
143157 CTGTCGGCTTTGACCTTGG
65 CTATCAGCTTTGAACTTGG
* * * * * * * * *
143176 AGGCTTCTTTACCTTTAGTATGCTTCTCGGCTTTGACCATAGAGACTTTTTACTTTTAGTTTGCT
1 AGACTTCCTTACCTTTAGTATGCCTATCGGCTTTGACCTTGGAGACTTTTGACTTTTAGTCTGCC
143241 TATCAGCTTTGAACTTGG
66 TATCAGCTTTGAACTTGG
* * *
143259 AGACTTCCTTACCTTTAGT-TGGCCTATCAGCTTTAACTTTGGAGACTT
1 AGACTTCCTTACCTTTAGTAT-GCCTATCGGCTTTGACCTTGGAGACTT
143307 CATCATCCTT
Statistics
Matches: 105, Mismatches: 25, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
82 1 0.01
83 68 0.65
84 36 0.34
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.41
Consensus pattern (83 bp):
AGACTTCCTTACCTTTAGTATGCCTATCGGCTTTGACCTTGGAGACTTTTGACTTTTAGTCTGCC
TATCAGCTTTGAACTTGG
Found at i:143510 original size:45 final size:42
Alignment explanation
Indices: 143459--143541 Score: 112
Period size: 45 Copynumber: 1.9 Consensus size: 42
143449 TCTATCTGCA
* *
143459 TTGACCCTAGAGATTCGCCTAACCTTCTTAGTCTACTTGTCAACT
1 TTGACCCTACAGATT-GCCTAA-CTT-TCAGTCTACTTGTCAACT
*
143504 TTGACCCTACAGATTTCCTAACTTTCAGTCTACTTGTC
1 TTGACCCTACAGATTGCCTAACTTTCAGTCTACTTGTC
143542 GGTTTTGACT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 13 0.37
43 3 0.09
44 5 0.14
45 14 0.40
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (42 bp):
TTGACCCTACAGATTGCCTAACTTTCAGTCTACTTGTCAACT
Found at i:143941 original size:34 final size:35
Alignment explanation
Indices: 143903--143969 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
143893 CCTTACAACA
143903 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
143937 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
143970 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:144447 original size:13 final size:13
Alignment explanation
Indices: 144429--144454 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
144419 CAATTTTTTG
144429 TGTATCGATACAT
1 TGTATCGATACAT
144442 TGTATCGATACAT
1 TGTATCGATACAT
144455 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:144541 original size:20 final size:20
Alignment explanation
Indices: 144516--144588 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
144506 TCTTTTTTTT
144516 ATGTATCGATACATTGCTAC
1 ATGTATCGATACATTGCTAC
** *
144536 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCTAC
*
144557 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCTAC
144577 ATGTATCGATAC
1 ATGTATCGATAC
144589 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 28 0.62
21 17 0.38
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCTAC
Found at i:144567 original size:41 final size:42
Alignment explanation
Indices: 144493--144588 Score: 158
Period size: 41 Copynumber: 2.3 Consensus size: 42
144483 CTGCGAAGAA
* *
144493 ATGTATCGATACATCTTTTTTTTATGTATCGATACATTGCTAC
1 ATGTATCGATACATC-TTTTTTCATGTATCGATACATTGCAAC
144536 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
144577 ATGTATCGATAC
1 ATGTATCGATAC
144589 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
41 36 0.71
43 15 0.29
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:146424 original size:13 final size:13
Alignment explanation
Indices: 146406--146430 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
146396 ACTGAAGCAA
146406 TGTATCGATACAT
1 TGTATCGATACAT
146419 TGTATCGATACA
1 TGTATCGATACA
146431 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:148081 original size:84 final size:84
Alignment explanation
Indices: 147926--148090 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
147916 CATTTTCCAC
* * * *
147926 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
147991 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
148010 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* * *
148072 CACTTATTGATTTATTTTC
63 AACTCATTGATTTACTTTC
148091 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
82 6 0.09
83 9 0.13
84 54 0.78
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:149642 original size:34 final size:35
Alignment explanation
Indices: 149604--149670 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
149594 CCTTACAACA
149604 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
149638 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
149671 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:150148 original size:13 final size:13
Alignment explanation
Indices: 150130--150155 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
150120 CAATTTTTTG
150130 TGTATCGATACAT
1 TGTATCGATACAT
150143 TGTATCGATACAT
1 TGTATCGATACAT
150156 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:150241 original size:20 final size:20
Alignment explanation
Indices: 150216--150288 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
150206 ATCTTTTTTT
150216 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
150236 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
150257 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
150277 ATGTATCGATAC
1 ATGTATCGATAC
150289 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:150267 original size:41 final size:42
Alignment explanation
Indices: 150194--150288 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
150184 CTGCGAAGAA
*
150194 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
150236 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
150277 ATGTATCGATAC
1 ATGTATCGATAC
150289 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:150956 original size:42 final size:42
Alignment explanation
Indices: 150586--151099 Score: 236
Period size: 42 Copynumber: 12.2 Consensus size: 42
150576 AACATTATCC
* ** * * * *
150586 TTAGTCTACTTGTCATCTCTGACTTTGGAGACTTCCTCACTA
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACTT
* * * *
150628 TTAGTCTGCCTGTCGGCTTTAACCTTGGAGACTTCCTCA-TGC
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACT-T
* * * * **
150670 ATAGTCTACCTGTCAGCTTTGATCC-TAGAGACTTTCTGACCA
1 TTAGTCTACCTGTCGGCTTTGA-CCTTGGAGACTTTCTCACTT
* * * *
150712 TTAGTCTGCCTGTCGGCTTTGA-CTGTGGAGACTTCCCCACCT
1 TTAGTCTACCTGTCGGCTTTGACCT-TGGAGACTTTCTCACTT
* * * * * * * * *
150754 TTAGTTTGCTTGTCAGCTTTAACTTTAGAGA-TTTCCTTACTG
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTT-CTCACTT
* * * * * * ** *
150796 TAAGTCTGCCTATTGACTTTGACCCTAAAGATTTTC-CAAACCTTT
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTC--A-C-TT
* * * * *
150841 TTAGTCTACCTGTCAGCTTTGACCCTGCA-AATTTCCTAACTT
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTT-CTCACTT
** *** * * *
150883 TTAGTCTA-CAATCAATTTTGACCCTAGAGACTTTCTGACTT
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACTT
* *
150924 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTAACCT
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACTT
* * * *
150966 TTAGTCTACCTGTCGGCTTTAACGTTGAAGACTTTCTCA-TCC
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACT-T
* * * * * * **
151008 TTAGTTTACTTGTTGTCTTTGACATTGGAGACTTCCTCACCC
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACTT
* * * * *
151050 TTAGTCTACTTGTC-GCTTTGACCGTGGAAACTTCCTCACCT
1 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACTT
151091 TTAGTCTAC
1 TTAGTCTAC
151100 TTATCAACTT
Statistics
Matches: 356, Mismatches: 98, Indels: 37
0.73 0.20 0.08
Matches are distributed among these distances:
40 1 0.00
41 62 0.17
42 256 0.72
43 8 0.02
44 6 0.02
45 23 0.06
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (42 bp):
TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTCACTT
Found at i:151133 original size:42 final size:41
Alignment explanation
Indices: 151033--151133 Score: 123
Period size: 41 Copynumber: 2.4 Consensus size: 41
151023 TCTTTGACAT
* * * *
151033 TGGAGACTTCCTCACCCTTAGTCTACTTGTCGCTTTGACCG
1 TGGAGACTTCCTCACCTTTAGTCTACTTATCACTTTAACCG
*
151074 TGGAAACTTCCTCACCTTTAGTCTACTTATCAACTTTAACTC-
1 TGGAGACTTCCTCACCTTTAGTCTACTTATC-ACTTTAAC-CG
*
151116 TGGAGACTTCCTTACCTT
1 TGGAGACTTCCTCACCTT
151134 AAGTTTGCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 28 0.55
42 22 0.43
43 1 0.02
ACGTcount: A:0.20, C:0.30, G:0.14, T:0.37
Consensus pattern (41 bp):
TGGAGACTTCCTCACCTTTAGTCTACTTATCACTTTAACCG
Found at i:151155 original size:125 final size:126
Alignment explanation
Indices: 150924--151155 Score: 263
Period size: 125 Copynumber: 1.8 Consensus size: 126
150914 TTTCTGACTT
* * * * **
150924 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTAACCTTTAGTCTACCTGTCGGCTTTAAC
1 TTAGTCTACCTGTCGGCTTTGACCGTGGAAACTTCCTAACCTTTAGTCTACCTATCAACTTTAAC
* * * * * *
150989 GTTGAAGACTTTCTCATCCTTAGTTTACTTGTTGTCTTTGACATTGGAGACTTCCTCACCC
66 GTTGAAGACTTCCTCATCCTTAGTTTACCTATCGACCTTGACATTGGAGACTTCCTCACCC
* * *
151050 TTAGTCTACTTGTC-GCTTTGACCGTGGAAACTTCCTCACCTTTAGTCTACTTATCAACTTTAAC
1 TTAGTCTACCTGTCGGCTTTGACCGTGGAAACTTCCTAACCTTTAGTCTACCTATCAACTTTAAC
* * *
151114 -TCTGGAGACTTCCTTA-CCTTAAGTTTGCCTATCGACCTTGAC
66 GT-TGAAGACTTCCTCATCCTT-AGTTTACCTATCGACCTTGAC
151156 CCTAAAGATT
Statistics
Matches: 86, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
124 5 0.06
125 68 0.79
126 13 0.15
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (126 bp):
TTAGTCTACCTGTCGGCTTTGACCGTGGAAACTTCCTAACCTTTAGTCTACCTATCAACTTTAAC
GTTGAAGACTTCCTCATCCTTAGTTTACCTATCGACCTTGACATTGGAGACTTCCTCACCC
Found at i:151393 original size:42 final size:42
Alignment explanation
Indices: 151272--151425 Score: 109
Period size: 42 Copynumber: 3.7 Consensus size: 42
151262 TTTAATCTGC
* * * *
151272 CTGTCGACTTTAACCTTGGAGACTTCCTTACCTTTAGTCTAT
1 CTGTCGGCTTTAACCTTAGAAACTTCCTTACCTTTAGTCCAT
* * * *
151314 CTGTCGGCTTTAACAC-TAAAAACTTGCTCA-TTCTTAGTCCA-
1 CTGTCGGCTTTAAC-CTTAGAAACTTCCTTACCT-TTAGTCCAT
* * ***
151355 CTTGTCGGCTTTGACCTTAGAAACTTTCTTACCTTTAGTCTGC
1 C-TGTCGGCTTTAACCTTAGAAACTTCCTTACCTTTAGTCCAT
* *
151398 CTATCGGCTTTAACCCT-GAAGACTTCCT
1 CTGTCGGCTTTAACCTTAGAA-ACTTCCT
151426 CATGCTTAGT
Statistics
Matches: 86, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
41 6 0.07
42 77 0.90
43 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (42 bp):
CTGTCGGCTTTAACCTTAGAAACTTCCTTACCTTTAGTCCAT
Found at i:151843 original size:36 final size:37
Alignment explanation
Indices: 151765--151843 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 37
151755 AACTTCCTCA
* * *
151765 TCCTTAGTCCACTTGTTGGCTTTAACCTTAGAGACTT
1 TCCTTAGTCCACCTATTGGCTTTAACCGTAGAGACTT
* * *
151802 T-CTTAGTCTACCTATTGGCTTTGACCGTGGAGA-TT
1 TCCTTAGTCCACCTATTGGCTTTAACCGTAGAGACTT
151837 TCCTTAG
1 TCCTTAG
151844 CTTTAGTTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
35 3 0.09
36 31 0.89
37 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (37 bp):
TCCTTAGTCCACCTATTGGCTTTAACCGTAGAGACTT
Found at i:151930 original size:42 final size:42
Alignment explanation
Indices: 151871--161406 Score: 749
Period size: 42 Copynumber: 226.1 Consensus size: 42
151861 CCTTTAACTC
*
151871 TAGAGACTT-CTTCACCTCAAGTCTGCCTATTAGCTTTGACCT
1 TAGAGACTTCCTT-ACCTCAAGTCTGCCTATTGGCTTTGACCT
* * *
151913 TAGAGACTTCCTTACCTCAGGTCTGCTTATCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
151955 TGGAGACTTCCTTACATCAAGTCTACTTATTAGCATTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * * *
151997 TGGAGACTTCCTTATCTTTAGCCT-CTCTGTCGACTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGC-CTATTGGCTTTGACCT
** * * * * * *
152039 TAGTTACTTTCTTACCCTCAAGTTTGCCTGTCGGCTTTGATCG
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
** *
152082 TAGAGACTTATTTACCTCAAGTCTGCCTGTTGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
152124 TGGAAACTTCCTTACTCTCAAGTCTGCCAATCGGTTTTGACCT
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * * *
152167 TGGAGACTTCCTCACCTTTAA-TTTGCATGTCGGCTTTAACTT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
152209 TTGAAACTTCCTTGCCACAAGTCTGCTTGTTGGCTTTGACC-
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
** * ** *
152250 TAGGAGACTTCCTTACCTTTAGTCTACCTATTACCTTTGACCC
1 TA-GAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * * * * *
152293 TAGAGATTTCTTTACTTTTAGTTTACTTGTCGGCTTTGATCC-
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGA-CCT
* * * *
152335 TAGAAACTTCTTTACCATTAA-TCTGCCTGTTGGCTTTGACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * * * *
152377 TGGAGACTTTCTTACCTTTATTTTGCTTATCGACTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
152419 TAGAGACTTCCTTACCTTAAGTTTGCCTATCGTCTTTGAGCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * *
152461 TAGAGACTTTCCTAACCTTCTTAGTCTACC-AGTCAGCTTTAACCC
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTA-TTGGCTTTGACCT
* * * * * * * *** *
152506 TATAGATTTCCTAACTTTTAA-TCTACCTGTCAACTTTAACCCT
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGA-CCT
* * * ** * * * * **
152549 TGGA-AATTCCATACCTTTAGTATTCTTGTTGAATTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * *
152590 T-GAAGACTTCTTTACCTTTAGTCTGCCTATCGGCTTTAACCC
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * **
152632 TAGAGACTT-TTTACTTTTAGTCTGCCTATCGGCTTTGAGTT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * * *
152673 TGGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * * *
152715 TAGTGACTT-CTTCATCCT-TGGTCTACCTATCGACTTTGACCC
1 TAGAGACTTCCTT-A-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
152757 TACAAACTTCCTCA-CT-ATTAGTCTGCC-AGTCGGCTTTGATCG
1 TAGAGACTTCCTTACCTCA--AGTCTGCCTA-TTGGCTTTGACCT
* * ** * * *** * *
152799 TGGAGACTTTCC-CACCTTTAGGCTGCTTATCAACTTTAACTT
1 TAGAGAC-TTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * *
152841 TGGAGACTTCCTTACCTCAAG-CTAGCCTATCGGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCT-GCCTATTGGCTTTGACCT
* * * ** * *
152883 TAGAGACTTTCCTAACCTTCTAAGTCTACCGATCCGCTTTAACCC
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * * ** ** * * * *
152928 AATAGACTTCCTAATATTTAGTCTACCTACTGACTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * *** *
152970 AAGAGAATTCCTTACCTTTAGTTTGCCTGCCGGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * *
153012 T-GAAGACTTTCTTACTTTTAGTCTGCTTATCGACTTTAACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * *
153054 TGGAGACTTCCTTTCCTTTAGTCTGCCTGTTGGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * * **
153096 TGGAGTCTTCCTCATCTTTAGTCTACCTGTCAGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *
153138 TAGAGACTT--TTTCACT-ATTAGTCTGCCTATCGACTTTGACCG
1 TAGAGACTTCCTTAC-CTCA--AGTCTGCCTATTGGCTTTGACCT
* ** ** * * ** *
153180 TGGAGACTTCCCCACCTTTAGTCTACTTATCAGCTTT-AACT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
*
153221 CTAGAAACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
1 -TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * *
153264 TGGAGACTTCCTTACCTCAGGTCT-CCT-TGTCGGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTAT-T-GGCTTTGACCT
* * * * * ** *
153306 TGGAGACTTCAC-TACATCAAGTCTACTTGTCAGCTTTAACCT
1 TAGAGACTTC-CTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * *
153348 TAGAGATTTCCTTATGCTCAAGTCTGCTTGTCAGCTTTAACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *** *
153391 TAAAGACTTCCGTACCAT-TAGTTTGCCTGGCGGCTTTGACCC
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * *** *
153433 TAGAAACTTCTTTACCTTTAGTGTGGCTATCAACTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
153475 TAGAGACTTTCTTACCTCAAGTTTGCCTGTCGGCTTTGAACA
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * * * *
153517 TGGAGACTTTGTTACCCTCAAGTTTACCTATCGACTTTGATCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * * * *
153560 TGGAGACTTCC-TGCCTTTATTATACCTGTCGACTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** ** * * *
153601 TGGAGACTTTTTTACCTTTAGTCTGCTTGTTGGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
** * ** *
153643 TAGAGA--TGGTT--GT-TTGT-TGGCC--TTGAC--T---CT
1 TAGAGACTTCCTTACCTCAAGTCT-GCCTATTGGCTTTGACCT
* * *** * * * *
153673 AAAAACTTTCCTTACCTTCTAAGTTTGCCTGTCGGCTTTAACCT
1 TAGAGACTTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * * *
153717 TGGAGACTTTCCTTACCTTCTAAGTCTGCTTGTTGGCTTTGACCC
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
** * *** *
153762 TAGAGACTTTTTTACACTCAAGTCTACCTGCCGGCTTTAACCT
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * ** *
153805 TGGAAACTTGCTTACGTCAAGTTTGTCTATCGATTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * * * *
153847 TAGAGACTTCTTTATCTTTAGTCAGCTTGTCGACTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * * * *
153889 TAGAGACTTCTTTACCTTCTAGTTTGTTTATCGACATTGGCCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * *
153932 TAGAGACTTCCTTACCTTCAAATCTACCTGTCGGCTTTGACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** *
153975 TACAAACTTCCTTACCCTCAAGTCTGTCTGTCAGCTTTAACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * *
154018 TGGAAACTTTTTTACCTTCAAGTTTGCCTTTTGGCTTTGACCC
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
154061 TAGAGACTACCTCACCTTC-AGTCTCCCTA-TCGATTTAGACCC
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTT-GACCT
*** ** * * * ** *
154103 T-GAAGACTTCGACACCTTTAGTTTGTCTGTCAGCTTTGACTT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** ** *
154145 TGGAGACATT-CTGACTTTTAGTCTATCTGTTGGCTTTGACCT
1 TAGAGAC-TTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
** * * ** * ** *
154187 GGGAGACTTTCTTACTTTTAGTCT-ACTATCAGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * *
154228 TAGAGACTTTC-TACTTTTAGTCTGCTTGTCGACTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * ** * * ** * * *
154269 TGGAGACTTTTTTACTTTTAGTTTGCCTGTCAGTTTTAACTT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
154311 TAGAGACTTTCTCATCCT-TAGTTTGCCTATCGGCTTTGACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
154353 TATAGACTT-TTTCACCAT-TAGTCTACCTATTGGCTTTGATCG
1 TAGAGACTTCCTT-ACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * ** *
154395 TGGAGACTTCCTCACCTTTAGTCTACTTGTCAGCTTT-AACT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *
154436 CGAGAGAC-TCTCTTACCTTAAGTCTGCCTATCGGCTTTGACCC
1 -TAGAGACTTC-CTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
154479 TAGAGATTTTCTTAACCTTCTTAGTCTACCTGTTAGCTTTGACCA
1 TAGAGACTTCCTT-ACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * * ** ** *
154524 T-GTAGATTTCCTAACATTTAGTCTGCCTAACGGTTTTGACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * **
154566 TGGAGAAC-TACTGACTTTTAGTTTGCCTATCAGCTTTGACCT
1 TAGAG-ACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * * *
154608 TAGAAACTTCCTTACCTTTAGTCTACCTATCGGCTTTAACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * ** * *
154650 TAAAGACTT-CTT-CATTCTTAGTTTACTTGTCAGCCTTGACTT
1 TAGAGACTTCCTTAC-CTC-AAGTCTGCCTATTGGCTTTGACCT
* * * * * * * *
154692 TAGAGACTTCCTCACC-CTTAGTTTGCTTGTCGCCTTTGACCG
1 TAGAGACTTCCTTACCTC-AAGTCTGCCTATTGGCTTTGACCT
* ** * * * *
154734 TCGAGACTTCCCCACCTTC-AGTCTACTTGA-TAG-ATTGAACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCT-ATTGGCTTTG-ACCT
* * * * * **
154776 TGGAGACTTCTTTACCTTAAGCCTTCCTATCAGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * ** *
154818 TGGAGACTTTCTCACCT-AAGGTGTGCTTGTCAGCTTTGACCC
1 TAGAGACTTCCTTACCTCAA-GTCTGCCTATTGGCTTTGACCT
* * * * *** * *
154860 TGGAGACTTCTTTACATTACATCAAGTCTGCTTGTCAACGTTAACCT
1 TAGAGACTTC----C-TTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * *
154907 TGGAGACTTCCTCACGCTGAAGTTTGTCTGTCGGCTTTGACCC
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * ***
154950 TAGAGACTTCTTTACCTTTAGTGT-CACTCTCATCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGC-CTATTGGCTTTGACCT
* * * * * * *
154992 TAGAAACTTTCTTACCTCAAGTCTGCATGTCGGCTTTGAACA
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
155034 TAGAGATTTTCTTACCCTCAAGTCTACCTATCGGCTTTGATCA
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * * * * *
155077 T-GAAAACTTTCTGACCTTTATTCTACCTATCGACTTTTACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * *
155119 TGGAGACTTCTTTACCTTTAGTTTACCTATTGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *
155161 TAGAGACGT--TTGCCT---GTC-GGCT-TTGAC-----CCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * * *
155191 AGAGA-CCATCCTTACCTTCTTAGTTTACGTGTTGGCTTTGACCC
1 -TAGAGACTTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * **
155235 TAGAGACATCCTGACCTTTAGT-TGCCTATAT-GCTTTGACCCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTAT-TGGCTTTGA-CCT
* ** * * *
155277 T-GAGACTTTCTTACCTTTAGTCTGCATGTCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
155318 TGGAGACTTTTCTTACCTTCTTAGGCTGCTTGTTGGCTTTGACCC
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * * **
155363 TAGAGACTTTCTTACCTTCAAGTTTGTC-AGTCAGCTTTGACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTA-TTGGCTTTGACCT
* * * * * * *
155406 T-GAGGACTTGCTTACATCAAGTCTGTCTGTCGGCTTGGACCC
1 TAGA-GACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * ***
155448 TAGACACTTCTTTACTTTTAGTCTACCTGCCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** *** * * * * *
155490 T---TACTTCTTTACCCTTTAGTCTATTTGTCGACTTTGGCCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
155530 TAAAGACTTCCCTACCTTAAAGTCTGCCTATCGGTTTTCACCC
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** ** *
155573 TAGAGACTTCCTTACACTCGAGTCTGCCCGTCAGCTTTAACCT
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
155616 TAGAGACATCTTTACCCTCAAGTCTACCTTTTGGCTTTGGCCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * *
155659 TAGAAACTTCCTCACCTTTAGACTGCCTGTCGG-TTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** ** * *
155700 T-GAAGACTTTCTAAATTTTAGTCTACCTGA-TGGCTTTTACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCT-ATTGGCTTTGACCT
* ** * ** * * *
155742 TGGAGACTTTTTTACTTTTAGTCTACCTGTCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** ** * * * *
155784 TTGAGATTTCTTTACCCTTTAGTCTGTTTCTCGGGCTTTGGCCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTAT-TGGCTTTGACCT
* * * * * * * *
155828 TAAAGACTTTCTTACCTTAAAATTTTCCTATCGGCTTTCACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** * ** * *
155871 TGGAGACTTCCTTACCCTTGAGTCTGCCTGTCAGTTTTAACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
155914 TGGAGACCTCTTTACCCTCAAGTCTACCTTTTGGCTTTGACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
155957 TAAAGACTTCCTCACCTTCGA-TCTACTTATCGGCTTTGA-CT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** * * * *
155998 TAAGAGACTTCCTCACCTTTAGTATGCCTGTGGGCTTTGACCC
1 T-AGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** *
156041 T-GAAAACTTTCTGACTTTTAGTTTGCCTATT-GCTTTGACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * *
156082 TGGAGACTTCTTTACCTTTAGTCTACCTGTTAGCTTTGACCAT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACC-T
* * * ** * *
156125 T-GTGACTTTC-TACTTTTAGTCTGCTTATCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * * *
156165 TGGAGACTTCCTAACCTTTAGTTTGCTTGTCGGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ***
156207 T-GTGACTTCCTCATCCT-TAGTCTACCTATCACCTTTGACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * * *
156248 TAGAGACTTCCTCACCAT-TAGTCTGTTTGTCGACTTCGACCG
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** ** * * *
156290 T-GAAAACTTCCCCACCTTTAGTCTG-CTAGTCAGG-TTTAACTT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTA-T-TGGCTTTGACCT
* * *
156332 TAGAGACTTCCATACCTC-AGTCTGTCTATCGGCTTTGACCCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGA-CCT
* ** * * ** *
156374 CA-AGACTTTTTTACCCTCAAGTCTGCCTGTCGATTTTGACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * **
156416 TAGAGACATCTTTATCCTCTAGTCCGTTTGTCAGCTTTGACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
156459 TGGAGACTTCTTTACCTTTAAGTTTGCCTATTGACTTTGACTT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * *
156502 TGGAGACTTCCTTACCCTCAAGTCTGCCTGTTGGCTTTAACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * *
156545 TGGAGACTTCTTTACCCTTAAGTCTGCC-ATTTGGCTTTGACCCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTA-TTGGCTTTGA-CCT
** * * * *
156589 T-GAGACTTCCCCACCTTTAA-TTTGCCTATCGACTTTGACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * ** **
156630 T-GTAGACTACCTCACTTTTAGTCTGCCTATCAGCTTTGACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * *
156672 TAGAGACTTTCTAACTTTTAGTTTGCTTATTGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * * * * *
156714 TGGAGACTAT-TTTAGCTTTACTCTGCCTGTCGACTTTGACCC
1 TAGAGACT-TCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * *
156756 TAGAAACTTTC-TACTTTTAGTCTGCCTGTTGGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * * *** **
156797 TGGAGACTTCCATACTTTTAGTCTGCATGTCAACTTAAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * **
156839 T-GAAGAC-TCCATCATCTCTTGTCTACCTATCAGCTTTGATCC-
1 TAG-AGACTTCC-TTACCTCAAGTCTGCCTATTGGCTTTGA-CCT
* * * * *
156881 TAGACACTTCCTTACCAT-TAGTCTGCTTGTTGGCTCTGA-CT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * *** * * ** * *
156922 GTGGAGACTT-CTCGACCTTTGGTCTGCTTGTCAGCTTTAACTT
1 -TAGAGACTTCCT-TACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * * *
156965 TGGAGACATCTTTACCTCATGTCTACCTATCGACTTTAACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
157007 TAGAGACTTTCCTAACCTTCTTAGTTTACTTGTCGGCTTTGACCT
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * * ** * * * *
157052 T-GTAGATTTCCTAACTTTTAGTTTGCCTGTTTGCTTTAACC-
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * *
157093 CATGAGAATTCCTTACCTTTAGTCTACCTATAT-GCTTTGACCC
1 TA-GAGACTTCCTTACCTCAAGTCTGCCTAT-TGGCTTTGACCT
* * * ** * * ** *
157136 TGGAGATTTTCTTACCTTTAGTCTGCTTGTCAGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
157178 TGGAGACTTTCCTTACCTTCTTAGTCTGCTTGTTGCCTTTGACCC
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
** ** * *
157223 TAGAGACTTTTTTACCCTCAAGTCTGCCTATCAGCTTTAACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
** * * * ** * * *
157266 TAGAGACTTGTTTACGTCAAATCTGTCTAGCGGCCTTAACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * ** *
157308 TGGAGACTTCTTTACCTTTAGTCTACCTATCAGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** *** * *
157350 T-GAAAACTTCTTTATCTTTTAGTCTATTTATCGGCTTTGACCC
1 TAG-AGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
157393 CA-AAACTTCCTTACCTTAAAGTTTGCCTATCGGGTTTGACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * ** *
157435 TGGAGACTTCCTTACCTTCAAGTCTGCCTGTCAGCTTTAACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
157478 TGGAGACTTCTTTACCCTCAAGTTTGCCTTTTAGCTTTGACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * *
157521 TAGAGACTTTCTCACCTTTAGTCTGCCTGTCGGCTTTGGCCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * ** * * *
157563 TAGAGACTT-CTTCACTTTTAGTATATCTCTCGGCTTTAACCT
1 TAGAGACTTCCTT-ACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
157605 TAGAGCCTTCCTCATCCT-TAGTCTACCTATTGCCTTTGACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * *
157647 TAGAGACTTCCTCACCAT-TAGTCTGCCTATCT-GCTTTGACCG
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTAT-TGGCTTTGACCT
** ** * * * *** *
157689 T-GAAGACTTCCCCACCTTTAGTCTACTTGTCAACTTT-AACT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * *
157730 CTAGAGGCTTCTTTACCTCAAGTCTCCCTATCAGCTTTAACCA
1 -TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *** *
157773 TAGAGACTTTCTTACCTTTAAGTCTGCCCATCAACTTTGACCC
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * ** **
157816 TAGAGACCTCCTGACCTGTAGTCTGCCTATCT-GCTTT-AATT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTAT-TGGCTTTGACCT
** * *** *
157857 CTAGAGACTTCCTTACCTTTAGTCTACCTATCAACTTTGACCC
1 -TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * * *
157900 TAGAGACTTCCTTACCCTTAAGTTTGCTTATCAGTTTTAACTT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * **
157943 TGGAGACTTCTTTACCCTCAAGTTTGCC-ATTTGTTTTTGACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTA-TTGGCTTTGACCT
* ** *
157986 TAGAGACTTCCTCACCTTC-AGTCTGCCTATTGAATTTGACCC
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * *** *
158028 TGGAGATTTTCTTACCTTTTGTCTG-CT-TGTGGACTTAGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTAT-TGG-CTTTGACCT
* * * * ** * ** * *
158070 TGGAGACTTTCTAACTTTTAGTCTACCCGTTAGCTTTGACCA
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * *
158112 TGGAGACTTCTTTAGCTTTAGTCT-CCTTATCGACTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCC-TATTGGCTTTGACCT
** * * ** ** * *
158154 TAGAGTTTTTC-TACTTTTAGTCTGCCGGTCGGCTTTGGCCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * * * *
158195 TGGAGATTTTCTTACATTTAGTTTCCCTATCGGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * *
158237 TAAAGACTTCGTCTT--C-CATTGTCTACTTGTTGGTTTTAACCC
1 TAGAGACTTC--CTTACCTCA-AGTCTGCCTATTGGCTTTGACCT
* * * *
158279 TAAAGACTT-CTTCACCAT-TAGTCTGCCTGTTGGCTTTGACCG
1 TAGAGACTTCCTT-ACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** * * *
158321 TAGAGACTTCCCTACCTTTAGTCT-CCT-TGTCAGCTTTAACTT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTAT-T-GGCTTTGACCT
* * * * *
158363 TAGAGACTTTCTTACCACATA-TCTG-CTTTTCGGCTTTAACCC
1 TAGAGACTTCCTTACCTCA-AGTCTGCCTATT-GGCTTTGACCT
* * * *** * **
158405 AAGAGACTTTCCTAACCTTCTTAGTCTATTTGTCAGCTTTGACCT
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * * * ** * * *
158450 TATAGATTTCCTAACTTTTAGTCTACCTGTCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
158492 TAGAGACTT--TTGA-CTTATAGTCTACTTGTCGGCTTTGACCT
1 TAGAGACTTCCTT-ACCTCA-AGTCTGCCTATTGGCTTTGACCT
* * * * *
158533 TGGAGACTTCCTCACACT-TAGTCTGCATGTTGGCTTTGACCT
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
158575 T-GAAAACTTCCTCACCATTAA-TCTGCCTGTCGGCTTTGATCG
1 TAG-AGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** ** * * * *** * *
158617 TGGAGACTTCCCCACCTTTAGCCTGCTTGTCAACTTTAACTT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *
158659 TGGAGACTTCCTCACCTCAAGTCTACCTATCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
158701 TGGAAACTTCCTTACCTCAAGTCTGCTTCTCGGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
158743 TAGAGACTTCCTTACATCAAGTTTGCTTTTTTGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* *
158785 TGGAGACTTCCTTACGGTCAAGTCTGCCTATTGGCTTTGA-CT
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
158827 CTAAAGACTTTCGTACCAT-TAGTTTGCCT-TTCGACTTTGACCC
1 -TAGAGACTTCCTTACC-TCAAGTCTGCCTATT-GGCTTTGACCT
* ** * * * ** * *
158870 TGGAGACTTCCTTACCTTTAGTGTGGCTGTCAGTTTTGACCA
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* *
158912 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTTAACT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *
158954 TGGAGACTTTCTTACCCTCAAGTCTACCTATCGGCTTTGATCC-
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGA-CCT
* * ** ** * * * * *
158997 TGGAGACTTCCTAATGTTTATTCTACTTGTTAGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * *
159039 TGGAGACTTCCTTACCGTTAA-TCTGCCTATTGGCTTTAACCT
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * * * * *
159081 TGGGGACTTCCTCATGCT-TAGTCTACCTATCGCCGTTGACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
159123 TAGAGACATCCTCAACAT-TAGTCTGCCTGTCGGCTTT-AACT
1 TAGAGACTTCCT-TACCTCAAGTCTGCCTATTGGCTTTGACCT
** * ** *
159164 GT-GAAGACTTTCC--ACCTTTAGTCTGCTTATCAGCTTT-AACT
1 -TAG-AGAC-TTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
*
159205 CTAGAGACTTCCTTACCTCAAGTCTGCCTATCGGCTTTGAGCC-
1 -TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGA-CCT
* * * * * ** *
159248 TAGAGACTTAC---CCTTAAGTCTGCTTGTCGATTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** ** * ***
159287 TAGAAACTTATTTACCCTCTAA-TCTGTTTCTAAACTTTGA-CT
1 TAGAGACTTCCTTA-CCTC-AAGTCTGCCTATTGGCTTTGACCT
* * * * * *
159329 CTCGAGACTTCCTTACCTTCAACTCAT-CTTGTTGGGTTTGACCC
1 -TAGAGACTTCCTTACC-TCAAGTC-TGCCTATTGGCTTTGACCT
* * * *
159373 TAGAGGCTTCCTTACCCTCAAGT-TCGCCT-TTCAGCTTTAACTT
1 TAGAGACTTCCTTA-CCTCAAGTCT-GCCTATT-GGCTTTGACCT
* ** * * *
159416 TGGAGACTTATTTACCCTCAAGTCTGCCTTTTGGCTTTGCCCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *
159459 TAGAGACTT-TTTCACCTTC-AGTCTCCCTATCGGCTTTGACCC
1 TAGAGACTTCCTT-ACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** * *** * *
159501 TAAAGACTTCCTTACCTTTAGTTTATTTGTTGGCCTTGA-CT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * * * *
159542 TAGGAAACTTTCTGACTTTTAGTTTGCTTGTTGGTTTTGACCT
1 TA-GAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * *
159585 TGGAGACTTCCTTACCTTTAGTCTACCTATTAGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
159627 TAGAGACTTTC-TACATTTAA-TCTGCTTGTCGGTTTTGACCT
1 TAGAGACTTCCTTAC-CTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * *** *
159668 TGGAGACTTTCTTACCTTTAGTCTGCCTGTCATCTTT-AACT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** *
159709 GTGGAGACTTCCTCATCCT-TAGTCTACCTATTGATTTTGATCT
1 -TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
159752 TAGAGACTTCCTCACCAT-TAGTTTGCCTATCGGCTTTGACCA
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** * * * * ** *
159794 TGGAGA-TATCCACACCAT-TAGTTTGCTTGTCAGCTTTAACTCT
1 TAGAGACT-TCCTTACC-TCAAGTCTGCCTATTGGCTTTGAC-CT
* * ** * **** *
159837 GA-ATACTTCCTTACCTTGAGTTTGCCTAACAACTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * ** *
159878 TAGAGACTTTTCTAACCTTCTTAGTCTACATCTCAGCTTTGACCC
1 TAGAGAC-TTCCTTACC-TC-AAGTCTGCCTATTGGCTTTGACCT
* * * * ** * * *
159923 T-GTAGATTTCATAACTTTTAGTCTGCTTGTAGGCTTTGACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * *
159965 TTGAGAATTCCTTACCTTTAGTCTACCTGTCGGCTTTGGCCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * *
160007 TAAAGACTTTCTAACTTTTAGTTTGCCTTTTGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * * * *
160049 TGGAGACTTCTTTACCTTTAGTCTACCTGTCGGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
160091 T-GAAGACTTACTCAGC-CATAGTCTACCTATAGGCTTTGACCT
1 TAG-AGACTTCCTTACCTCA-AGTCTGCCTATTGGCTTTGACCT
* * ** *** *
160133 TGGAGACTTCCTCACCAT-AAGTCTGCCCGTCATCTTTGACCA
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * * **** * *
160175 TAGAGAGTTTCTTACCCTCAAGTTTACCTATAAATTTTAACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * *** * ** *
160218 TGGACACTTCTTTACCCTCTAA-TCTATTTCTTAACTTTGTCCT
1 TAGAGACTTCCTTA-CCTC-AAGTCTGCCTATTGGCTTTGACCT
* * * * * *
160261 TGGAGACTTCCTTACCTTCAACTCTTCCTGTTAGCTTTGACCC
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * *** *
160304 TAGAGACATCCTTACCCTCAAGTCTGCTTGTCAACTTTAACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * *
160347 TGGAGACTTATTTACCCTCAAGTCTGCTTTTTGGCTTTGA-CT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
160389 CTAAAGA-TTGCTTCACCTTC-AGTCTGCTTATCGGCTTTGACCC
1 -TAGAGACTTCCTT-ACC-TCAAGTCTGCCTATTGGCTTTGACCT
* *** * * * *
160432 TAGAGACTTCCTCACCTTTGGTCTGCTTGTCGGCTTTTACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
** * * * *
160474 T-GTAGACTTCCTTACCTTTAGTCTGTCTATCGGATTTGACCC
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
160516 TAGATACTT-TTTA-CTTATAGTTTGCTTATCGGATTTGACCT
1 TAGAGACTTCCTTACCTCA-AGTCTGCCTATTGGCTTTGACCT
* ** * * * **
160557 TTGAGACTTCCTTACCTTTAGTTTGCCTGTCT-GCTTTAATTT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTAT-TGGCTTTGACCT
* * * * * * ** *
160599 TAGAGACTTTCTCATCCT-TAGTCTACTTGTCAGCTTCGACCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
160641 TAGAGACTTCCTCACCAT-TAGTCTGCCTGTCGGCTTTGACCG
1 TAGAGACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* ** ** * * *
160683 TGGAGACTTCCTTACCTTTAGTCTGTTTGTTAGCTTT-AACT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** *
160724 CTAGAAACTTCCTTACCTTAAGTTTGCCTATCAGCTTTGACCC
1 -TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * * *
160767 TGGAGACTTTCTTAACCTTCCTAA-TTTACCAATCGGCTTTGACCG
1 TAGAGACTTCCTT-ACC-T-C-AAGTCTGCCTATTGGCTTTGACCT
* * * ** * * *
160812 TATAGA-TTTCTTAGCTTTTAGTCTGTCTGTCGGCTTTGACCCT
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGA-CCT
* * ** * * * *
160855 TA-AGAATTCCTTATCTTTAGTCTGCTTGTCGGTTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * ** * ** *
160896 T-GAAGACTTTCTAACTTTTAGTCTGCCTGTCAGTTTTGACCT
1 TAG-AGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
** * * * ** *
160938 TAGAGACTTCCACACCTTAAGTCTGCATGTCAGCTTT-AACT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * *
160979 CTAAAGACTTCCTTACCTCAAGTCTGCCTATCGACTTTGACCT
1 -TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * *
161022 TGGAGACTTCCTTACCTCAGGTCTG-CTGGTCGGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCT-ATTGGCTTTGACCT
* * * * * ** *
161064 TAGGGACTTCTTTACATCAAGTCCGCCTGTCAGCTTTAACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
161106 TAGAGACTTCCTTATGCTCAAGTTTGCTTATCGACTTTGACCC
1 TAGAGACTTCCTTA-CCTCAAGTCTGCCTATTGGCTTTGACCT
** * * *** *
161149 TA-AGGACTTCCACACCGT-TAGTCCGCCTGGAGGCTTTGACCC
1 TAGA-GACTTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACCT
* * * * ** * * * ** *
161191 TGGAAACTTCTTTGCCTTTAGTGTGGCTGTCAGCTTTGACCC
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * * * * *
161233 AAGAGACTTCCTTACCTCAAGTTTGCCTGTTGGCTATGAGCA
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* ** * * * **
161275 TAGAGGCTTTGTTACCCTCTAGTTTAG-CTATCGGCTTTGGTCT
1 TAGAGACTTCCTTA-CCTCAAGTCT-GCCTATTGGCTTTGACCT
* ** * * * *
161318 TAGAGACTTCCTGACCTTTATTATACCTATCGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
* * ** * *
161360 TGGAGACTTCTTTACCTTTAGTTTGCCTGTTGGCTTTGACCT
1 TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
161402 TAGAG
1 TAGAG
161407 TCTTTGTGTC
Statistics
Matches: 6980, Mismatches: 2097, Indels: 834
0.70 0.21 0.08
Matches are distributed among these distances:
30 8 0.00
31 3 0.00
32 7 0.00
33 2 0.00
35 9 0.00
36 3 0.00
37 14 0.00
38 5 0.00
39 48 0.01
40 69 0.01
41 615 0.09
42 4210 0.60
43 1541 0.22
44 169 0.02
45 237 0.03
46 7 0.00
47 31 0.00
48 2 0.00
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (42 bp):
TAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACCT
Found at i:152852 original size:422 final size:422
Alignment explanation
Indices: 152240--153178 Score: 1012
Period size: 422 Copynumber: 2.2 Consensus size: 422
152230 TCTGCTTGTT
* * * * * * * * *
152240 GGCTTTGACCTAGGAGACTTCCTTACCTTTAGTCTACCTATTACCTTTGACCCTAGAGATTTCTT
1 GGCTTTAACCTTGGAGACTTCCTCACCTTTAGTCTACCTGTCAGCTTTAACCTTAGAGACTTCTT
* * * * * * * * * * * *
152305 TACTTTTAGTTTACTTGTCGGCTTTGATCCTAGAAACTTCTTTACCATTAATCTGCCTGTTGGCT
66 CACTATTAGTCTACCTATCGACTTTGACCCTACAAACTTCCTCACCATTAATCTGCCAGTCGGCT
* ** *** * *
152370 TTGACCTTGGAGACTTTCTTACCTTTATTTTGCTTATCGACTTTGACCCTAGAGACTTCCTTACC
131 TTGACCGTGGAGACTTTCCCACCTTTAGGCTGCTTATCAACTTTAACCCTAGAGACTTCCTTACC
* * * * * * *
152435 TTAAGTTTGCCTATCGTCTTTGAGCTTAGAGACTTTCCTAACCTTCTTAGTCTACC-AGTCAGCT
196 TCAAGCTAGCCTATCGGCTTTGACCCTAGAGACTTTCCTAACCTTCTAAGTCTACCGA-TCAGCT
* * * **
152499 TTAACCCTATAGATTTCCTAACT-TTTAATCTACCT-GTCAACTTTAACCCTTG-GAAATTCCAT
260 TTAACCCAATAGACTTCCTAA-TATTTAATCTACCTACT-AACTTTAACCCAAGAG-AATTCCAT
* ** * *
152561 ACCTTTAGTATT-CTTGTTGAATTTGACCTTGAAGAC-TTCTTTACCTTTAGTCTGCCTATCGGC
322 ACCTTTAGT-TTGCCTGCCGAATTTGACCCTGAAGACTTTC-TTACCTTTAGTCTGCCTATCGAC
*
152624 TTTAACCCTAGAGACTT-TTTACTTTTAGTCTGCCTATC
385 TTTAACCCTAGAGACTTCTTT-CCTTTAGTCTGCCTATC
* ** * * * * *
152662 GGCTTTGAGTTTGGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTAACCTTAGTGACTTCTT
1 GGCTTTAACCTTGGAGACTTCCTCACCTTTAGTCTACCTGTCAGCTTTAACCTTAGAGACTTCTT
* * * *
152727 CA-TCCTTGGTCTACCTATCGACTTTGACCCTACAAACTTCCTCACTATTAGTCTGCCAGTCGGC
66 CACT-ATTAGTCTACCTATCGACTTTGACCCTACAAACTTCCTCACCATTAATCTGCCAGTCGGC
* ** *
152791 TTTGATCGTGGAGACTTTCCCACCTTTAGGCTGCTTATCAACTTTAACTTTGGAGACTTCCTTAC
130 TTTGACCGTGGAGACTTTCCCACCTTTAGGCTGCTTATCAACTTTAACCCTAGAGACTTCCTTAC
*
152856 CTCAAGCTAGCCTATCGGCTTTGACCCTAGAGACTTTCCTAACCTTCTAAGTCTACCGATCCGCT
195 CTCAAGCTAGCCTATCGGCTTTGACCCTAGAGACTTTCCTAACCTTCTAAGTCTACCGATCAGCT
* * * *
152921 TTAACCCAATAGACTTCCTAATATTTAGTCTACCTACTGACTTTGACCCAAGAGAATTCCTTACC
260 TTAACCCAATAGACTTCCTAATATTTAATCTACCTACTAACTTTAACCCAAGAGAATTCCATACC
** * *
152986 TTTAGTTTGCCTGCCGGCTTTGACCCTGAAGACTTTCTTACTTTTAGTCTGCTTATCGACTTTAA
325 TTTAGTTTGCCTGCCGAATTTGACCCTGAAGACTTTCTTACCTTTAGTCTGCCTATCGACTTTAA
* * * *
153051 CCTTGGAGACTTCCTTTCCTTTAGTCTGCCTGTT
390 CCCTAGAGACTT-CTTTCCTTTAGTCTGCCTATC
* * * *
153085 GGCTTTAACCTTGGAGTCTTCCTCATCTTTAGTCTACCTGTCAGCTTTGACCTTAGAGACTTTTT
1 GGCTTTAACCTTGGAGACTTCCTCACCTTTAGTCTACCTGTCAGCTTTAACCTTAGAGACTTCTT
*
153150 CACTATTAGTCTGCCTATCGACTTTGACC
66 CACTATTAGTCTACCTATCGACTTTGACC
153179 GTGGAGACTT
Statistics
Matches: 421, Mismatches: 86, Indels: 19
0.80 0.16 0.04
Matches are distributed among these distances:
421 4 0.01
422 316 0.75
423 97 0.23
424 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (422 bp):
GGCTTTAACCTTGGAGACTTCCTCACCTTTAGTCTACCTGTCAGCTTTAACCTTAGAGACTTCTT
CACTATTAGTCTACCTATCGACTTTGACCCTACAAACTTCCTCACCATTAATCTGCCAGTCGGCT
TTGACCGTGGAGACTTTCCCACCTTTAGGCTGCTTATCAACTTTAACCCTAGAGACTTCCTTACC
TCAAGCTAGCCTATCGGCTTTGACCCTAGAGACTTTCCTAACCTTCTAAGTCTACCGATCAGCTT
TAACCCAATAGACTTCCTAATATTTAATCTACCTACTAACTTTAACCCAAGAGAATTCCATACCT
TTAGTTTGCCTGCCGAATTTGACCCTGAAGACTTTCTTACCTTTAGTCTGCCTATCGACTTTAAC
CCTAGAGACTTCTTTCCTTTAGTCTGCCTATC
Found at i:153089 original size:84 final size:84
Alignment explanation
Indices: 150586--153275 Score: 547
Period size: 84 Copynumber: 31.9 Consensus size: 84
150576 AACATTATCC
* * * * * * * * *
150586 TTAGTCTACTTGTCATCTCTGACTTTGGAGACTTCCTCA-CTATTAGTCTGCCTGTCGGCTTTAA
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCT-TTAGTCTGCCTATCGGCTTTGA
*
150650 CCTTGGAGACTTCCTCA-TGC
65 CCTTGGAGACTTCCTCACT-T
* * * * * * * *
150670 ATAGTCTACCTGTCAGCTTTGATCC-TAGAGACTTTCTGACCATTAGTCTGCCTGTCGGCTTTGA
1 TTAGTCTACTTATCAGCTTT-AACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* *
150734 -CTGTGGAGACTTCCCCACCT
65 CCT-TGGAGACTTCCTCACTT
* * * * * * * *
150754 TTAGTTTGCTTGTCAGCTTTAACTTTAGAGATTTCCTTA-CTGTAAGTCTGCCTATTGACTTTGA
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCT-TTAGTCTGCCTATCGGCTTTGA
* ** * **
150818 CCCTAAAGATTTTCCAAACCTTT
65 CCTTGGAGA-CTTCCTCA-C-TT
* * * * * * * * * * ***
150841 TTAGTCTACCTGTCAGCTTTGACCCT-GCAAATTTCCTAACTTTTAGTCT-ACAATCAATTTTGA
1 TTAGTCTACTTATCAGCTTTAACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* * * *
150904 CCCTAGAGACTTTCTGACTT
65 CCTTGGAGACTTCCTCACTT
* * * * * * * * * *
150924 TTAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTAACCTTTAGTCTACCTGTCGGCTTTAAC
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGAC
* * * *
150989 GTTGAAGACTTTCTCA-TCC
66 CTTGGAGACTTCCTCACT-T
* * * * * * * * * * *
151008 TTAGTTTACTTGT-TGTCTTTGACATTGGAGACTTCCTCACCCTTAGTCTACTTGTC-GCTTTGA
1 TTAGTCTACTTATCAG-CTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* * *
151071 CCGTGGAAACTTCCTCACCT
65 CCTTGGAGACTTCCTCACTT
* * * * * *
151091 TTAGTCTACTTATCAACTTTAA-CTCTGGAGACTTCCTTACCTTAAGTTTGCCTATCGACCTTGA
1 TTAGTCTACTTATCAGCTTTAACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* ** * *
151155 CCCTAAAGATTTTCCTAACCTTT
65 CCTTGGAGA-CTTCCTCA-C-TT
* * * * * * * ** * * * * * *
151178 TTGGTCTTCTTATCAGCTTTGACCCTATATATTTTTTTAACTTTTAGTTTACTTATTGGTTTTGA
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTT-ACCTTTAGTCTGCCTATCGGCTTTGA
* * ** **
151243 CCCTAGAGACTTTTTGGCTT
65 CCTTGGAGACTTCCTCACTT
* * * * * ** * *
151263 TTAATCTGCCTGTC-GACTTTAACCTTGGAGACTTCCTTACCTTTAGTCTATCTGTCGGCTTTAA
1 TTAGTCTACTTATCAG-CTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
** * *
151327 CAC-TAAAAACTTGCTCA-TT
65 C-CTTGGAGACTTCCTCACTT
* * * * * * *
151346 CTTAGTCCACTTGTCGGCTTTGACCTTAGAAACTTTCTTACCTTTAGTCTGCCTATCGGCTTTAA
1 -TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* * *
151411 CCCTGAAGACTTCCTCA-TGC
65 CCTTGGAGACTTCCTCACT-T
* * * * * * * * * *
151431 TTAGTTTACTTGTTAGCTTTAACCCTGGAGACTTGCTT-CCCTTAGTCTACTTGTC-GCTTTGA-
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGAC
* * *
151493 CTGTGGAAACTTCCCCACCT
66 CT-TGGAGACTTCCTCACTT
* * * * * * * * * * **
151513 TTAGTTTGCTTGTCAACTTTAACTCTGA-AGGCTTGCTTAACTTAAGTCTACCTATCTTCTTTGA
1 TTAGTCTACTTATCAGCTTTAAC-CTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* * * * *
151577 CCCTAGAGATTTTCATAACCTT
65 CCTTGGAGA-CTTCCTCA-CTT
* * * * ** * * * *
151599 CTTGGTCTTCTTATCACCTTTGACCTT-GCAGA-TTTTTTAACGTGTAGTCTGCCTATTGGTTTT
1 -TTAGTCTACTTATCAGCTTTAACCTTAG-AGACTTCCTT-ACCTTTAGTCTGCCTATCGGCTTT
* * ** *
151662 GACAC-TGGATAATTTTTTACTT
63 GAC-CTTGGAGACTTCCTCACTT
* * * * ** * * * *
151684 TTAATCTGCATGTTGGCTTTAACCTT-GAAGACTTTCTTACCTTTAGTTTGCTTATCGGCTTTAA
1 TTAGTCTACTTATCAGCTTTAACCTTAG-AGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* * * *
151748 CCCTGAAAACTTCCTCA-TCC
65 CCTTGGAGACTTCCTCACT-T
* * ** * *
151768 TTAGTCCACTTGTTGGCTTTAACCTTAGAGAC-T--TT--C-TTAGTCTACCTATTGGCTTTGAC
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGAC
* * *
151827 CGTGGAGATTTCCTTAGC-T
66 CTTGGAGACTTCCTCA-CTT
* * * * ** **
151846 TTAGTTTGCTTGTCACCTTTAA-CTCTAGAGACTT-CTTCACCTCAAGTCTGCCTATTAGCTTTG
1 TTAGTCTACTTATCAGCTTTAACCT-TAGAGACTTCCTT-ACCTTTAGTCTGCCTATCGGCTTTG
* * *
151909 ACCTTAGAGACTTCCTTAC-C
64 ACCTTGGAGACTTCCTCACTT
* * * * * * ** * * ** * *
151929 TCAGGTCTGCTTATCGGCTTTGACCTTGGAGACTTCCTTACATCAAGTCTACTTATTAGCATTAA
1 TTA-GTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
*
151994 CCTTGGAGACTTCCTTA-TCT
65 CCTTGGAGACTTCCTCACT-T
* * * * ** * ** * *
152014 TTAGCCT-CTCTGTC-GACTTTGACCCTAGTTACTTTCTTACCCTCAAGTTTGCCTGTCGGCTTT
1 TTAGTCTACT-TATCAG-CTTTAACCTTAGAGACTTCCTTA-CCTTTAGTCTGCCTATCGGCTTT
* * * ** * *
152077 GATCGTAGAGACTTATTTACCT
63 GACCTTGGAGACTTCCTCACTT
** * * * ** * * * ** * *
152099 CAAGTCTGCCTGTTGGCTTTGACCTTGGAAACTTCCTTACTCTCAAGTCTGCCAATCGGTTTTGA
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTAC-CTTTAGTCTGCCTATCGGCTTTGA
*
152164 CCTTGGAGACTTCCTCACCT
65 CCTTGGAGACTTCCTCACTT
* * * * * * * * * * *** * * *
152184 TTAATTTGCATGTCGGCTTTAACTTTTGAAACTTCCTTGCCACAAGTCTGCTTGTTGGCTTTGAC
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGAC
* * *
152249 CTAGGAGACTTCCTTACCT
66 CTTGGAGACTTCCTCACTT
* * * * * * * * * * * *
152268 TTAGTCTACCTATTACCTTTGACCCTAGAGATTTCTTTACTTTTAGTTTACTTGTCGGCTTTGAT
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA-
* * * * **
152333 CC-TAGAAACTTCTTTACCA
65 CCTTGGAGACTTCCTCACTT
* * * * ** * * * * * * *
152352 TTAATCTGCCTGTTGGCTTTGACCTTGGAGACTTTCTTACCTTTATTTTGCTTATCGACTTTGAC
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGAC
* * * *
152417 CCTAGAGACTTCCTTACCT
66 CTTGGAGACTTCCTCACTT
* * * * * * * * *
152436 TAAGTTTGCCTATC-GTCTTTGAGCTTAGAGACTTTCCTAACCTTCTTAGTCTACC-AGTCAGCT
1 TTAGTCTACTTATCAG-CTTTAACCTTAGAGAC-TTCCTTACC-T-TTAGTCTGCCTA-TCGGCT
* * ** * *
152499 TTAACCCTATAGATTTCCTAACTT
61 TTGACCTTGGAGACTTCCTCACTT
* * * * * * * * * * * * **
152523 TTAATCTACCTGTCAACTTTAACCCTTGGA-AATTCCATACCTTTAGTATTCTTGTTGAATTTGA
1 TTAGTCTACTTATCAGCTTTAA-CCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* * * *
152587 CCTTGAAGACTTCTTTACCT
65 CCTTGGAGACTTCCTCACTT
* * * * * * *
152607 TTAGTCTGCCTATCGGCTTTAACCCTAGAGACTT-TTTACTTTTAGTCTGCCTATCGGCTTTGAG
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGAC
* * *
152671 TTTGGAGACTTCCTTACCT
66 CTTGGAGACTTCCTCACTT
* * * * * * *
152690 TTAGTCTGCTTGTCGGCTTTAACCTTAGTGACTT-CTTCATCC-TTGGTCTACCTATCGACTTTG
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTT-A-CCTTTAGTCTGCCTATCGGCTTTG
* ** * *
152753 ACCCTACAAACTTCCTCACTA
64 ACCTTGGAGACTTCCTCACTT
* * * * * * * * * * ** *
152774 TTAGTCTGC-CAGTCGGCTTTGATCGTGGAGACTTTCC-CACCTTTAGGCTGCTTATCAACTTTA
1 TTAGTCTACTTA-TCAGCTTTAACCTTAGAGAC-TTCCTTACCTTTAGTCTGCCTATCGGCTTTG
* * *
152837 ACTTTGGAGACTTCCTTACCT
64 ACCTTGGAGACTTCCTCACTT
** * * * * * * * *
152858 CAAG-CTAGCCTATCGGCTTTGACCCTAGAGACTTTCCTAACCTTCTAAGTCTACCGATCCGCTT
1 TTAGTCTA-CTTATCAGCTTTAACCTTAGAGAC-TTCCTTACCTT-T-AGTCTGCCTATCGGCTT
* **** *
152922 TAACCCAATAGACTTCCT-AATAT
62 TGACCTTGGAGACTTCCTCACT-T
* * * ** * * **
152945 TTAGTCTACCTA-CTGACTTTGACCCAAGAGAATTCCTTACCTTTAGTTTGCCTGCCGGCTTTGA
1 TTAGTCTACTTATCAG-CTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
* * * *
153009 CCCTGAAGACTTTCTTACTT
65 CCTTGGAGACTTCCTCACTT
* * * * * *
153029 TTAGTCTGCTTATC-GACTTTAACCTTGGAGACTTCCTTTCCTTTAGTCTGCCTGTTGGCTTTAA
1 TTAGTCTACTTATCAG-CTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
*
153093 CCTTGGAGTCTTCCTCA-TCT
65 CCTTGGAGACTTCCTCACT-T
* * * * *
153113 TTAGTCTACCTGTCAGCTTTGACCTTAGAGACTT--TTTCACTATTAGTCTGCCTATCGACTTTG
1 TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTAC-CT-TTAGTCTGCCTATCGGCTTTG
* * *
153176 ACCGTGGAGACTTCCCCACCT
64 ACCTTGGAGACTTCCTCACTT
* ** *
153197 TTAGTCTACTTATCAGCTTTAA-CTCTAGAAACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGA
1 TTAGTCTACTTATCAGCTTTAACCT-TAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGA
153261 CCTTGGAGACTTCCT
65 CCTTGGAGACTTCCT
153276 TACCTCAGGT
Statistics
Matches: 1891, Mismatches: 611, Indels: 208
0.70 0.23 0.08
Matches are distributed among these distances:
77 2 0.00
78 52 0.03
79 2 0.00
80 2 0.00
81 3 0.00
82 51 0.03
83 231 0.12
84 1044 0.55
85 210 0.11
86 62 0.03
87 195 0.10
88 37 0.02
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.39
Consensus pattern (84 bp):
TTAGTCTACTTATCAGCTTTAACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCGGCTTTGAC
CTTGGAGACTTCCTCACTT
Found at i:153937 original size:43 final size:43
Alignment explanation
Indices: 153824--153950 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 43
153814 GCTTACGTCA
* * *
153824 AGTTTGTCTATCGATTTTGACCCTAGAGACTTCTTTATCTT-T
1 AGTTTGTTTATCGACTTTGACCCTAGAGACTTCTTTACCTTCT
** * *
153866 AGTCAGCTTGTCGACTTTGACCCTAGAGACTTCTTTACCTTCT
1 AGTTTGTTTATCGACTTTGACCCTAGAGACTTCTTTACCTTCT
* * * *
153909 AGTTTGTTTATCGACATTGGCCTTAGAGACTTCCTTACCTTC
1 AGTTTGTTTATCGACTTTGACCCTAGAGACTTCTTTACCTTC
153951 AAATCTACCT
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.42
Consensus pattern (43 bp):
AGTTTGTTTATCGACTTTGACCCTAGAGACTTCTTTACCTTCT
Found at i:153976 original size:43 final size:43
Alignment explanation
Indices: 153680--183707 Score: 5164
Period size: 42 Copynumber: 709.0 Consensus size: 43
153670 TCTAAAAACT
* * *
153680 TTCCTTACCTTCTAAGTTTGCCTGTCGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
153724 TTTCCTTACCTTCTAAGTCTGCTTGTTGGCTTTGACCCTAGAGAC
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
153769 TTTTTTACAC-TCAAGTCTACCTGCCGGCTTTAACCTTGGAAAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** *
153812 TTGCTTA-CGTCAAGTTTGTCTATCGATTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
153854 TTCTTTATCTT-TAGTCAGCTTGTCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * * * *
153896 TTCTTTACCTTCTAGTTTGTTTATCGACATTGGCCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
153939 TTCCTTACCTTCAAATCTACCTGTCGGCTTTGACCTTACAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
153982 TTCCTTACCCTCAAGTCTGTCTGTCAGCTTTAACCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
154025 TTTTTTACCTTCAAGTTTGCCTTTTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
154068 TACCTCACCTTC-AGTCTCCCTATC-GATTTAGACCCT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTT-GACCTTAG-AGAC
*** * * * * * *
154110 TTCGACACCTT-TAGTTTGTCTGTCAGCTTTGACTTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** ** * **
154152 ATT-CTGA-CTTTTAGTCTATCTGTTGGCTTTGACCTGGGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
154194 TTTCTTA-CTTTTAGTCT-ACTATCAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
154235 TTTC-TA-CTTTTAGTCTGCTTGTCGACTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** * * * * *
154276 TTTTTTA-CTTTTAGTTTGCCTGTCAGTTTTAACTTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
154318 TTTCTCATCCTT--AGTTTGCCTATCGGCTTTGACCCTATAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
154360 TT-TTTCACCATT--AGTCTACCTATTGGCTTTGATCGTGGAGAC
1 TTCCTT-ACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
154402 TTCCTCACCTT-TAGTCTACTTGTCAGCTTT-AACTCGAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * *
154444 -TCTCTTACCTT-AAGTCTGCCTATCGGCTTTGACCCTAGAGAT
1 TTC-CTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
154486 TTTCTTAACCTTCTTAGTCTACCTGTTAGCTTTGACCAT-GTAGAT
1 TTCCTT-ACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * ** * *
154531 TTCCTAACATT-TAGTCTGCCTAACGGTTTTGACCTTGGAGAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAG-AC
* * ** * * * *
154574 -TACTGA-CTTTTAGTTTGCCTATCAGCTTTGACCTTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
154615 TTCCTTACCTT-TAGTCTACCTATCGGCTTTAACCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
154657 TT-CTT-CATTCTTAGTTTACTTGTCAGCCTTGACTTTAGAGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
154699 TTCCTCACCCTT--AGTTTGCTTGTCGCCTTTGACCGTCGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
154741 TTCCCCACCTTC-AGTCTACTTGAT-AG-ATTGAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTG-TCGGCTTTG-ACCTTAGAGAC
* * * * * *
154783 TTCTTTACCTT-AAGCCTTCCTATCAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
154825 TTTCTCACC-T-AAGGTGTGCTTGTCAGCTTTGACCCTGGAGAC
1 TTCCTTACCTTCAA-GTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * * *
154867 TTCTTTACATTACATCAAGTCTGCTTGTCAACGTTAACCTTGGAGAC
1 TTCCTTAC----CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
154914 TTCCTCACGC-TGAAGTTTGTCTGTCGGCTTTGACCCTAGAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** *
154957 TTCTTTACCTT-TAGTGT-CACTCTCATCTTTGACCTTAGAAAC
1 TTCCTTACCTTCAAGTCTGC-CTGTCGGCTTTGACCTTAGAGAC
* * * * *
154999 TTTCTTACC-TCAAGTCTGCATGTCGGCTTTGAACATAGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
155041 TTTCTTACCCTCAAGTCTACCTATCGGCTTTGATCAT-GAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * * * * * *
155084 TTTCTGACCTT-TATTCTACCTATCGACTTTTACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
155126 TTCTTTACCTT-TAGTTTACCTATTGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * ** **
155168 GT--TTGCC-T---GTCGGCTTTGAC-CCTAGAGACC----ATCC
1 TTCCTTACCTTCAAGTCTGC-CTGTCGGCT-TTGACCTTAGAGAC
* * * * *
155202 TTACCTT--CTT--AGTTTACGTGTTGGCTTTGACCCTAGAGAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * **
155242 ATCCTGACCTT-TAGT-TGCCTATATGCTTTGACCCTT-GAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * *
155283 TTTCTTACCTT-TAGTCTGCATGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
155325 TTTTCTTACCTTCTTAGGCTGCTTGTTGGCTTTGACCCTAGAGAC
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
155370 TTTCTTACCTTCAAGTTTGTCAGTCAGCTTTGACCTT-GAGGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGA-GAC
* * * * * *
155413 TTGCTTA-CATCAAGTCTGTCTGTCGGCTTGGACCCTAGACAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
155455 TTCTTTA-CTTTTAGTCTACCTGCCGGCTTTGACCTT---TAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * * * *
155494 TTCTTTACCCTT-TAGTCTATTTGTCGACTTTGGCCCTAAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
155537 TTCCCTACCTTAAAGTCTGCCTATCGGTTTTCACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
155580 TTCCTTACAC-TCGAGTCTGCCCGTCAGCTTTAACCTTAGAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * * *
155623 ATCTTTACCCTCAAGTCTACCTTTTGGCTTTGGCCCTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
155666 TTCCTCACCTT-TAGACTGCCTGTCGG-TTTGACCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* ** ** * * *
155707 TTTC-TAAATTTTAGTCTACCTGAT-GGCTTTTACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTG-TCGGCTTTGACCTTAGAGAC
** ** * * *
155749 TTTTTTA-CTTTTAGTCTACCTGTCGGCTTTGACCTTTGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * * *
155791 TTCTTTACCCTT-TAGTCTGTTTCTCGGGCTTTGGCCCTAAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTC-GGCTTTGACCTTAGAGAC
* * * * * * * *
155835 TTTCTTACCTTAAAATTTTCCTATCGGCTTTCACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
155878 TTCCTTACCCTT-GAGTCTGCCTGTCAGTTTTAACCTTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
155921 CTCTTTACCCTCAAGTCTACCTTTTGGCTTTGACCTTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
155964 TTCCTCACCTTCGA-TCTACTTATCGGCTTTGA-CTTAAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTT-AGAGAC
* * * * * *
156006 TTCCTCACCTT-TAGTATGCCTGTGGGCTTTGACCCT-GAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * ** * * * *
156048 TTTCTGA-CTTTTAGTTTGCCTAT-TGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
156089 TTCTTTACCTT-TAGTCTACCTGTTAGCTTTGACCATT-GTGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACC-TTAGAGAC
* ** * * *
156131 TTTC-TA-CTTTTAGTCTGCTTATCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
156172 TTCCTAACCTT-TAGTTTGCTTGTCGGCTTTAACCTT-GTGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * **
156213 TTCCTCATCCTT--AGTCTACCTATCACCTTTGACCTTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
156255 TTCCTCACCATT--AGTCTGTTTGTCGACTTCGACCGT-GAAAAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * *
156297 TTCCCCACCTT-TAGTCTG-CTAGTCAGG-TTTAACTTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCT-GTC-GGCTTTGACCTTAGAGAC
* * * *
156339 TTCCATACC-TC-AGTCTGTCTATCGGCTTTGACCCTCA-AGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
** * ** *
156380 TTTTTTACCCTCAAGTCTGCCTGTCGATTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** * *
156423 ATCTTTATCC-TCTAGTCCGTTTGTCAGCTTTGACCTTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
156466 TTCTTTACCTTTAAGTTTGCCTATTGACTTTGACTTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
156509 TTCCTTACCCTCAAGTCTGCCTGTTGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *
156552 TTCTTTACCCTT-AAGTCTGCCAT-TTGGCTTTGACCCTT-GAGAC
1 TTCCTTA-CCTTCAAGTCTGCC-TGTCGGCTTTGA-CCTTAGAGAC
** * * * *
156595 TTCCCCACCTTTAA-TTTGCCTATCGACTTTGACCTT-GTAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * ** * *
156637 TACCTCA-CTTTTAGTCTGCCTATCAGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * * * *
156679 TTTC-TAACTTTTAGTTTGCTTATTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
156721 TAT-TTTAGCTT-TACTCTGCCTGTCGACTTTGACCCTAGAAAC
1 T-TCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
156763 TTTC-TA-CTTTTAGTCTGCCTGTTGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * ** **
156804 TTCCATA-CTTTTAGTCTGCATGTCAACTTAAACCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * ** * * * *
156846 -TCCAT-CATCTCTTGTCTACCTATCAGCTTTGATCC-TAGACAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * *
156888 TTCCTTACCATT--AGTCTGCTTGTTGGCTCTGA-CTGTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* ** * * * * *
156930 TT-CTCGACCTT-TGGTCTGCTTGTCAGCTTTAACTTTGGAGAC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
156972 ATCTTTACC-TCATGTCTACCTATCGACTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
157014 TTTCCTAACCTTCTTAGTTTACTTGTCGGCTTTGACCTT-GTAGAT
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* ** * ** * * *
157059 TTCC-TAACTTTTAGTTTGCCTGTTTGCTTTAACC-CATGAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTA-GAGAC
* * * ** * * *
157101 TTCCTTACCTT-TAGTCTACCTATATGCTTTGACCCTGGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
157143 TTTCTTACCTT-TAGTCTGCTTGTCAGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
157185 TTTCCTTACCTTCTTAGTCTGCTTGTTGCCTTTGACCCTAGAGAC
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
157230 TTTTTTACCCTCAAGTCTGCCTATCAGCTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * * *
157273 TTGTTTA-CGTCAAATCTGTCTAG-CGGCCTTAACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
* * * * * * *
157315 TTCTTTACCTT-TAGTCTACCTATCAGCTTTGACCCT-GAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * ** *** * ** *
157357 TTCTTTATCTTTTAGTCTATTTATCGGCTTTGACCCCA-AAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
157399 TTCCTTACCTTAAAGTTTGCCTATCGGGTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
157442 TTCCTTACCTTCAAGTCTGCCTGTCAGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** *
157485 TTCTTTACCCTCAAGTTTGCCTTTTAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
157528 TTTCTCACCTT-TAGTCTGCCTGTCGGCTTTGGCCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * ** * * *
157570 TT-CTT-CACTTTTAGTATATCTCTCGGCTTTAACCTTAGAGCC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
157612 TTCCTCATCCTT--AGTCTACCTATTGCCTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
157654 TTCCTCACCATT--AGTCTGCCTATCTGCTTTGACCGT-GAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * * ** * *
157696 TTCCCCACCTT-TAGTCTACTTGTCAACTTT-AACTCTAGAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * *
157738 TTCTTTACC-TCAAGTCTCCCTATCAGCTTTAACCATAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** ** *
157780 TTTCTTACCTTTAAGTCTGCCCATCAACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * **
157823 CTCCTGACCTGT--AGTCTGCCTATCTGCTTT-AATTCTAGAGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * ** *
157865 TTCCTTACCTT-TAGTCTACCTATCAACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
157907 TTCCTTACCCTT-AAGTTTGCTTATCAGTTTTAACTTTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * **
157950 TTCTTTACCCTCAAGTTTGCCAT-TTGTTTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCC-TGTCGGCTTTGACCTTAGAGAC
* * * ** * * *
157993 TTCCTCACCTTC-AGTCTGCCTATTGAATTTGACCCTGGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
158035 TTTCTTACCTT-TTGTCTGCTTGT-GGACTTAGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGG-CTTTGACCTTAGAGAC
* * ** * * ** * *
158077 TTTC-TAACTTTTAGTCTACCCGTTAGCTTTGACCATGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * **
158119 TTCTTTAGCTT-TAGTCT-CCTTATCGACTTTGACCTTAGAGTT
1 TTCCTTACCTTCAAGTCTGCC-TGTCGGCTTTGACCTTAGAGAC
* ** * * * *
158161 TTTC-TA-CTTTTAGTCTGCCGGTCGGCTTTGGCCTTGGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
158202 TTTCTTACATT-TAGTTTCCCTATCGGCTTTAACCTTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
158244 TTCGTCTT-CCATT---GTCTACTTGTTGGTTTTAACCCTAAAGAC
1 TTC--CTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *
158286 TT-CTTCACCATT--AGTCTGCCTGTTGGCTTTGACCGTAGAGAC
1 TTCCTT-ACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
158328 TTCCCTACCTT-TAGTCT-CCTTGTCAGCTTTAACTTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCC-TGTCGGCTTTGACCTTAGAGAC
* * * * * **
158370 TTTCTTACC-ACATA-TCTGCTTTTCGGCTTTAACCCAAGAGAC
1 TTCCTTACCTTCA-AGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * * *
158412 TTTCCTAACCTTCTTAGTCTATTTGTCAGCTTTGACCTTATAGAT
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** *
158457 TTCC-TAACTTTTAGTCTACCTGTCGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
158499 TT--TTGA-CTT-ATAGTCTACTTGTCGGCTTTGACCTTGGAGAC
1 TTCCTT-ACCTTCA-AGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
158540 TTCCTCACACTT--AGTCTGCATGTTGGCTTTGACCTT-GAAAAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * *
158582 TTCCTCACCATT-AA-TCTGCCTGTCGGCTTTGATCGTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * ** * * *
158624 TTCCCCACCTT-TAGCCTGCTTGTCAACTTTAACTTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
158666 TTCCTCACC-TCAAGTCTACCTATCGGCTTTGACCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
158708 TTCCTTACC-TCAAGTCTGCTTCTCGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** * *
158750 TTCCTTA-CATCAAGTTTGCTTTTTTGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * *
158792 TTCCTTACGGTCAAGTCTGCCTATTGGCTTTGA-CTCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * * *
158835 TTTCGTACCATT--AGTTTGCCTTTCGACTTTGACCCTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
158877 TTCCTTACCTT-TAGTGTGGCTGTCAGTTTTGACCATAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
158919 TTCCTTACC-TCAAGTCTGCCTATTGGCTTTTAACTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
158961 TTTCTTACCCTCAAGTCTACCTATCGGCTTTGATCC-TGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* ** * * * * ** *
159004 TTCCTAATGTT-TATTCTACTTGTTAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
159046 TTCCTTACCGTT-AA-TCTGCCTATTGGCTTTAACCTTGGGGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
159088 TTCCTCATGCTT--AGTCTACCTATCGCCGTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
159130 ATCCTCAACATT--AGTCTGCCTGTCGGCTTT-AACTGT-GAAGAC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAG-AGAC
* * * * *
159172 TTTCC--ACCTT-TAGTCTGCTTATCAGCTTT-AACTCTAGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
*
159213 TTCCTTACC-TCAAGTCTGCCTATCGGCTTTGAGCC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * ** * *
159255 TTAC---CCTT-AAGTCTGCTTGTCGATTTTGACCCTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * ** * *** *
159294 TTATTTACCCTCTAA-TCTGTTTCTAAACTTTGA-CTCTCGAGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * *
159337 TTCCTTACCTTCAACTCAT-CTTGTTGGGTTTGACCCTAGAGGC
1 TTCCTTACCTTCAAGTC-TGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
159380 TTCCTTACCCTCAAGT-TCGCCTTTCAGCTTTAACTTTGGAGAC
1 TTCCTTACCTTCAAGTCT-GCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
159423 TTATTTACCCTCAAGTCTGCCTTTTGGCTTTGCCCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
159466 TT-TTTCACCTTC-AGTCTCCCTATCGGCTTTGACCCTAAAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * * *
159508 TTCCTTACCTT-TAGTTTATTTGTTGGCCTTGA-CTTAGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTA-GAGAC
* * ** * * * * *
159550 TTTCTGA-CTTTTAGTTTGCTTGTTGGTTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
159592 TTCCTTACCTT-TAGTCTACCTATTAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
159634 TTTC-TACATTTAA-TCTGCTTGTCGGTTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
159675 TTTCTTACCTT-TAGTCTGCCTGTCATCTTT-AACTGTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * ** *
159717 TTCCTCATCCTT--AGTCTACCTATTGATTTTGATCTTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
159759 TTCCTCACCATT--AGTTTGCCTATCGGCTTTGACCATGGAGA-
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * *
159800 TATCCACACCATT--AGTTTGCTTGTCAGCTTTAACTCTGA-ATAC
1 T-TCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * ** ** *
159843 TTCCTTACCTT-GAGTTTGCCTAACAACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
159885 TTTTCTAACCTTCTTAGTCTACATCTCAGCTTTGACCCT-GTAGA-
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * ** * * * *
159929 TTTCATAACTTTTAGTCTGCTTGTAGGCTTTGACCTTTGAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
159972 TTCCTTACCTT-TAGTCTACCTGTCGGCTTTGGCCTTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * * *
160014 TTTC-TAACTTTTAGTTTGCCTTTTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
160056 TTCTTTACCTT-TAGTCTACCTGTCGGCTTTAACCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * * * *
160098 TTACTCAGC--CATAGTCTACCTATAGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCA-AGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
160140 TTCCTCACCAT-AAGTCTGCCCGTCATCTTTGACCATAGAGAG
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * **** * * * *
160182 TTTCTTACCCTCAAGTTTACCTATAAATTTTAACCCTGGACAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * *** * *
160225 TTCTTTACCCTCTAA-TCTATTTCTTAACTTTGTCCTTGGAGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** *
160268 TTCCTTACCTTCAACTCTTCCTGTTAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
160311 ATCCTTACCCTCAAGTCTGCTTGTCAACTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
160354 TTATTTACCCTCAAGTCTGCTTTTTGGCTTTGA-CTCTAAAGA-
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
160396 TTGCTTCACCTTC-AGTCTGCTTATCGGCTTTGACCCTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
160439 TTCCTCACCTT-TGGTCTGCTTGTCGGCTTTTACCTT-GTAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * * *
160481 TTCCTTACCTT-TAGTCTGTCTATCGGATTTGACCCTAGATAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
160523 TT-TTTA-CTT-ATAGTTTGCTTATCGGATTTGACCTTTGAGAC
1 TTCCTTACCTTCA-AGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * **
160564 TTCCTTACCTT-TAGTTTGCCTGTCTGCTTTAATTTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
160606 TTTCTCATCCTT--AGTCTACTTGTCAGCTTCGACCTTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
160648 TTCCTCACCATT--AGTCTGCCTGTCGGCTTTGACCGTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** ** * *
160690 TTCCTTACCTT-TAGTCTGTTTGTTAGCTTT-AACTCTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
160732 TTCCTTACCTT-AAGTTTGCCTATCAGCTTTGACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
160774 TTTCTTAACCTTCCTAA-TTTACCAATCGGCTTTGACCGTATAGA-
1 TTCCTT-ACCTT-C-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
160818 TTTCTTAGCTTTTAGTCTGTCTGTCGGCTTTGACCCTTA-AGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * *
160861 TTCCTTATCTT-TAGTCTGCTTGTCGGTTTTGACCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * ** * *
160903 TTTC-TAACTTTTAGTCTGCCTGTCAGTTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
160945 TTCCACACCTT-AAGTCTGCATGTCAGCTTT-AACTCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * *
160987 TTCCTTACC-TCAAGTCTGCCTATCGACTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
161029 TTCCTTACC-TCAGGTCTG-CTGGTCGGCTTTGACCCTAGGGAC
1 TTCCTTACCTTCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
* * * * *
161071 TTCTTTA-CATCAAGTCCGCCTGTCAGCTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
161113 TTCCTTATGC-TCAAGTTTGCTTATCGACTTTGACCCTA-AGGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGA-GAC
** * ** * * *
161156 TTCCACACCGTT--AGTCCGCCTGGAGGCTTTGACCCTGGAAAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * **
161198 TTCTTTGCCTT-TAGTGTGGCTGTCAGCTTTGACCCAAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
161240 TTCCTTACC-TCAAGTTTGCCTGTTGGCTATGAGCATAGAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * **
161282 TTTGTTACCCTCTAGTTTAG-CTATCGGCTTTGGTCTTAGAGAC
1 TTCCTTACCTTCAAGTCT-GCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
161325 TTCCTGACCTT-TATTATACCTATCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
161367 TTCTTTACCTT-TAGTTTGCCTGTTGGCTTTGACCTTAGAGTC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** * * * * *
161409 TTTGTGT-CGGCTTTGACTCTAAAGACT-T-TGC-TT-ACCTTCTCAGTTTGCC
1 TTCCT-TAC--CTTCAAGTCT---GCCTGTCGGCTTTGACC-T-T-AG--AGAC
* *** * * ** * * * *
161458 TGTCGGCTTTGACCTT-AGAGACTTTTTTATC-TCAAGTCAACTT-GTTGGC
1 T-TC--C-TT-ACCTTCA-AGTC-TGCCTGTCGGC-TTTGACCTTAG-AGAC
* * ** * * * *
161507 TT--TGACATTGGAGACTTG-CTTTAC--CTTT-A-GTTAGCCCGA-
1 TTCCTTACCTTCAAGTC-TGCCTGT-CGGCTTTGACCTTAG--AGAC
* * * * * * * ***
161546 TGGCTTTAACC--CATGAGACTTCCTGAC--CTTTAGTCTGTCTATCTAC
1 T-TCCTT-ACCTTCA--AGTCTGCCTGTCGGCTTT-GAC-CT-TAGAGAC
* * * * * *
161592 TT--TGACCTTAAAGACT-TCTTTAC--CTTTAGTCTACTT-GTCAG-C
1 TTCCTTACCTTCAAGTCTGCCTGT-CGGCTTT-GAC--CTTAG--AGAC
* ** * * * ** *
161634 TT--TAACCTTGGAGACTTTCCT-T-AGCTTTTTGTTC-TACATGTTAGC
1 TTCCTTACCTTCAAGTC-TGCCTGTCGGC--TTTGACCTTAGA-G--A-C
* * ** * * *
161679 TTTGACCCTGGAGACCTTC--TTACACCCAAGTCTGCTTGTTAGCTTTGACCTTGGAGAC
1 -TT---CCT---TACCTTCAAGT-CTGCC-TGTCGGCTT--------TGACCTTAGAGAC
* ** * * * *
161737 TTGCTTA--TGTCAAGTCTTTCTATCAGCTATGACCTTGGAGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * * *
161779 TTCCTCACCATT--AGTCTACTTGTCAACTTTAACCGTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
161821 TTCCTCACCTT-TAGTTTGCTTGTCAGCTTTAACTTTAGGGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
161863 TTCCTTACC-TCATGTTTGACTATCTGCTTTGACCTTACATAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
161905 TTTCCTAACCTTTTTAGTCTACTTGTCGGCTTTGACCCTATAGA-
1 -TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** ** * * * * * *
161949 TTTCTTAAGTTTTAGTCTACTTGTTGGCTTTAACCTTTGAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
161992 TTCCTTACCTT-TAGTCTACCTATCTGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
162034 TTTCTTACCTT-TAGTCTGCCTGTCGTCATTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
162076 TTTCCTCACTTTCTAAGTCTGCTTGTTGGCTTTGACCCTAAAGAC
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * *
162121 TTTTTTACCATCAAGTCTACCTATCGACTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * *
162164 GTGCTTA-CGTCAAGTATGTCTGTCGAATTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
162206 TTTTTTACCTT-TAGTTTGCCTGCCGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * ** *
162248 TTCGTTACCATTTAA-TCTATTTGTCGGTTTTGACCCCAAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
162291 TTCCTTACCTTAAAGTCTGCCTATCGGATTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * **
162334 TTCTTTA-CTCTCGAGTCTGCCTGTCGGCTTTAACCTCGGAGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
162377 TTCTTTACCCTCAAGTCCGCCTTTTGGCTTTGACATTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
162420 TTCCTCACCTT-TAGTTTGCCAATCGGCTTTGACCTTAGATAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
162462 TT-TTTCACCTT-TAGTCTGCCTGTCGACTTTGACC-TAGGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTA-GAGAC
* * ** * * * *
162504 TTTC-TAACTTTTAGTCTTCTTGTTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
162546 TT-TTTAACTT-TAGTTTGCTTATCGCCTTTGA-CTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* ** * * * * * *
162587 TT-TTTA-CTTTTAGTTTACTTGTCAGCTTTGACATTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
162628 TTTCTTACCTT-TAGTCTACCTGTCGGCTTTAACCTTGGAGCC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
162670 TTCATAATCCTT--AGTCTACCTATCGCCTTTGACGC-TAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * ** * *
162712 TTCCTCACCATT--AGTCTGCCTATTGATTTTAACCGT-GAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * * * ** *
162754 TTCCCCACCTT-TATTCTGCTTATCAACTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * *
162796 TTCTTTGCC-TCAAGTCTCCCTATCAGCTTTGACCATAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
162838 TTTCTTACCCTT-AAGTCTGCCCGTCGACTTTGACTTTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
162881 CTCCTGACCTGT--AGTCTGCCTATCTGCTTTAACCCTAGAGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * **
162923 TTCCTAACCTT-TAGTTTGCCAATCGGCTTTGAGCC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * *
162965 TTCCTTACCCTCAAGTTTGTCC-GTCGGCTTTAACCATAGAGAC
1 TTCCTTACCTTCAAGTCTG-CCTGTCGGCTTTGACCTTAGAGAC
* * * *
163008 TTCTTTACCCTCAAGTCTGCCTTTTGGCTTTGACAC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * *
163051 TTCCTCACCTTC-AGTCTGCCTATTGGCTTTGGCCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * **
163093 TTCCTCACCATT--AGTCTGCCTATCGATTTTGACCTTAGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** * * ** *
163135 TTTTTTA-CTTTTAGTCTACCTATTAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
163177 TTCTTTAGCTT-TAGTCTCCCTGTCGGCTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
163219 TTTC-TA-CTTTTAGTCT-ACTAGTCGACTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
* * ** * * *
163260 ATT-CTTACCTT-TAGTTTGTTTGTCGACTTTAACCTTGGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * * *
163302 TTCTTTTTCCTT--AGTCTACCAATTGGCTTTAACCCTAGAGAC
1 TTC-CTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
163344 TT-TTTCACCATT--AGTCTTCCTGTCGGTTTTGACCATGGAGAC
1 TTCCTT-ACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * * * *
163386 TTCCCTATCTT-TAGTGTGCTTGTTAGCTTTAACTTTAAAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
163428 TTCCTTGCC-TCATA-TCTGCCTTTCGACTTTGACCCTACAGAT
1 TTCCTTACCTTCA-AGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
163470 TTCC-TAACTTTTAGTCTACCGGTCGGCTTTGACCCTT-GAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * *
163512 TTCCTTACCTT-TAGTCTGCATGTCAGCTTTGACCTTAGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
163554 TTTC-TAACTTTTAGTCTGCCTGTTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** *
163596 TTCCTTACCTT-TAGTCTACCTGTCAACTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** *
163638 TT-CTTCATCCTT--ACTCTGCCCGTCAACTTTGACCTTGGAGAC
1 TTCCTT-A-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
163680 GTCCTCACCATT--AGTCTGCCCATCGGCTTTGACATTCGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
163722 TTGCC-CACCTT-TAGTCTACCTGTCGGCTTTAATCGTGGAGGC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
163764 TTCCTCACCTT-TAGTCTGCTTCTCAGCTTTAACTTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
163806 TTCCTTACC-TCAAGTCTGCCTATTGGCTTTGACATTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
163848 TTCATTACC-TCAAGTCTGCTTGTCGGCTTTGACCCTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
163890 TTCCTTA-CATCAAGTTTGCTTGTCAACTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
163932 TTCATTA-CATCAAGTCTGTCTATCGGCTTTGA-CTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
163974 TTTCATACCATT--AGTCTGCCTATCGACTTTGACCTTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * ** *
164016 TTGTTTACCATT-AA-TGTGGTTGTCAGCTTTGACCTTAGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
164058 TTCCTTACC-TCAAGTTTGCTTGTCGGCTTTGAACTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * *
164100 TTTCTTACCTTCAAGTCTGCTTATCGGCTTTGATCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * *
164143 TT-CTTAACCTT-TATTCTGCTTGTCAGCTTTGACCTTGGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
164185 TTCCTT-CCTTTTAGTCTGTC-GTCAGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * *
164226 TTCCTTATCCTT--AGTCTATCTATCGCCTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
164268 TTCCTCACC-TCAATTCTGCCTATCGGCTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** * * ** *
164310 TTTTTTACCCACAAGTCTGCTTATCGATTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *** * ** *
164353 TTCTTTACCCTCTAA-TTTATTTGTCGCCACTGACCTTGGAGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * * *
164396 TTCCTTACCTTTAACTTTTCTTATTGGCTTTGACCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
164439 TTCTTTACCCTT-AAGTCAACCTGTTGGCTTTAACTTTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
164482 TTATTTACCCTCAAGTTTGCCTTTTGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
164525 TT-CTTCACCTTCTA-TCT-CCTTATCGGCTTTGACCCTAGAAAC
1 TTCCTT-ACCTTCAAGTCTGCC-TGTCGGCTTTGACCTTAGAGAC
* ** * *
164567 TT-CTTCACCTTTC-A-TCCGTTTGTCGGCTTTGA-CTCAGGAAAC
1 TTCCTT-ACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTA-GAGAC
* ** * * *
164609 TT-TTTGA-CTTTTAGTCTGCCTATTGGCTTTCACCTCT-GAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
** * * * *
164651 TTTTTTACCTT-TAGTCTGCCTATTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
164693 TTTC-TA-CTTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
164734 TTCCTTACCTT-TAGTCTGCCTATCTGTTTTGACAATT-GAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * *
164776 TTCCTTACCGTT--AGTCTACTTGTCAGCTTTGACCCTAGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
164818 TTTCTAACTTTTAA-TTTGCCTGTCAGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
164860 TTCCTTACCATT--AGTCTGCTTGTTGGCTTTAACCTTCAAAAAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTT-AGAGAC
* * * * * *
164903 TTTCTCAGCCTT--AGTCTAG-CTATAGGTTTTGACCTTGGAGAC
1 TTCCTTA-CCTTCAAGTCT-GCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
164945 TTCCTCACCATT--AGTCTTCTTTTCAGCTTTGACCGTGGAGACC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* * * * ** * *
164988 TTCC-CACCTT-TACTTTGCAAGTTGGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * *
165029 TTCCTTACC-TCAATTCTGCCTATTGGCTTTGGCCTTGGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
165071 TTCCTTACC-TC-AGTTCTGCTTGTCAGCTTTGACCCTAAAGAC
1 TTCCTTACCTTCAAG-TCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** * *
165113 TTCCTTA--TATCAAGTCTGTTTGTCCACTTTAACCTTGGAGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
165155 TTCTTTACGC-TCAAGTTTACTTGTCAGCTTTGATCC-TAAAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* ** * * ** * *
165198 TTTCGCA-CTAT-TAGTTTG-CTAGTCAACTTTAACCTTGGAGAC
1 TTCCTTACCT-TCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
* * * * * * *
165240 TTCTTTACCATT--AGTGTGGCTGTCCGTTTTAACCCTAGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
165282 TTCCTTACC-TCAAGTCTGCCTATCAGCTTTAATCCTGA-AGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* *** * * *
165324 TTCCTGACCTT-TTTTCTG-CTCGT-TGCTTTAACCTTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
* * * * *
165365 TTCCTTACCTTC-AGTTTACCTGTTGGC-TTGAACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTG-ACCTTAGAGAC
* * * * * * *
165407 TTCCTCATCTT-TAGTCTACCTATCGCCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
165449 TTACTCACAATT--AGTCTGCCTATCGGCTTTGA-CTGT-GAAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCT-TAG-AGAC
** * * * * *
165491 TTCCCCACCTT-TAGTCTGCTTGTCAGCTTT-AACTCTCGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
** * * *
165533 TTTTTTACC-TCAAGTCTGCTTATCGGCTTTGACCTT-GTAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* ** *
165575 GTT-CTTACCCTT-AAGTCTGCCTATCGATTTTGACCTTAGATAC
1 -TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * * * * *
165618 TTCTTTACCCTCTAA-TCTATTTCTCAGTTTTGACCAT-GTTGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * *
165661 TTCCTTACCTTCAACTCTTCATGTTGGCTTTGA-CTATGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
165704 TTCCTAACCCTCAAGTCTGCCTGTCAGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
165747 TTATTTACCCTCAAGTCTGCCTTTTGGCTTTGACCCTAGCGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
165790 CT-CTTCACCTT-TAGTCTTCCTATCGGCTTCGACCCTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *** *
165832 TTTCTAACCTT-TAGTCTATTTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
165874 TTCCTTACCTT-TAGTCTACCTATTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
165916 TT-TTCTA-CTTTTAGTCTGCTTATCGACTTTGACCCTT-GAGAA
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * *
165958 TTCCTTACCTT-TAGTCTGCCTGCCGGCTTTGACCTTAAAGACC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* ** * * ** *
166001 TT--TTAACTTTTAGTTTGCTTGTTAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
166042 ATCCTCACCATT-AA-TCTGCCTGTCAGCTTTGACCGT-GAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * *
166084 TTCCCTACCTT-TAGTCTGCATGTCAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
** * * * * *
166126 TTTGTTACC-TAAAATCTGCCTATCGGCATTGACCTTGGATG-C
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGA-GAC
* * * * * *
166168 TTCCTTA-CTTGAGGTCTGCTTGTCAGCTTTGACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *** *
166210 TTCCATA-CATCAAGTCTGCTTGTTATCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
166252 TTCCTTATGCTT-AAGTCTACCTATCGGCTTTGACCCTAAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
166295 TTCCGCACCATT--AGTTTGCTTGTCGGCTTTGACCCTGGTGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
166337 TTCTTTACCTT-TATTGTGGCTGTTGGCTTTGACCTTAAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
166379 TTTCTTACC-TCAAGTCTGCTTGTCTGCTTTGAACAT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * * * * *
166421 TTTGTTACCTTCAAGTTTGCCTATAGACATTGATCC-TAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * * * * * *
166464 TTTCTGACCTT-TATTCTACTTGTTAGG-TTTGACCTT-GAACAC
1 TTCCTTACCTTCAAGTCTGCCTG-TCGGCTTTGACCTTAG-AGAC
* * * * *
166506 TT-CTTTCCTTTTAA-TCTGCCTGTTGGCTTTGACCCTATAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * **
166548 GT--TT-GCTT---GTCAG-CT-TTGACTCTAGAGAC-T--ATCC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCT-TTGA-CCTTAGAGAC
* * * *
166582 TTACCTT--CTT--AGTTTGCCTATCGGCTTTGACCCTAAAGAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
166622 ATT-TTTACCCTCAAGTCTGCTTGTCGGCTTTAACAC-CAGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * * * *
166665 TTGCTTTGCCTT-TAGTTTGCCAG-AGGCTTTGACCTTTGAGAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
166707 TT-CTTGACCTT-TAGTTTACCTATCTGCTTTGACCCTGGAGAT
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** *** * *
166749 TTCATTTCCTT-TTGTCTATTTGTCGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
*** * * * * *
166791 TTTCCTTACCTTTTTGGTC-GACTTGTTGGCTTTGGCCCTGGAGAC
1 -TTCCTTACC-TTCAAGTCTG-CCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
166836 TTTCTTACAC-CCAAGTCTACTTGTCAGCTTTGACCTTGGAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
166879 TTGCTTA--TGTCGAGTCTGTTTGTCGGCTTTAACCCTAGAGACC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* * *
166922 TT-TTTACCGTT--AGTCTACCTATCGGCTTTGACCCTT-GAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * ** * *
166963 TTCTTTAGCCTT-TACTCTGTTTGTCAGCTTTGACAC-CAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * * *
167006 TTCCTCACCTTTAAATCTGCCTGTCGGTTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * * *
167049 TTCTTTACCCTCAAGTCTTCCTTTCAG-TTCTAACATTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTT-TGACCTTAGAGAC
* * * *
167092 AT-CTTAACCCTCAAGTCTGCCT-TTGGCTTTAACCTTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
167134 TT-TTTCTCCTTC-AGTCTCCCTATCAGCTTTGACCCTTA-AGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * *
167176 TT-CTTCACCTT-TAGTCTGCTTGTCGGCTTTGACATGA-AGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * * * * *
167217 TTCCCCAACTT-TAGTTTGCTTATCAGCTTTAACTTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
167259 TTCCTTATC-TCAAGTCTGCCTATTGACTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
167301 TTTCTTACCCTCAAGTCTGCCTATCGATTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
167344 TT-CTTGACCCTTTAA-TCTGTTTCTCGGCTTTGACCCTGGAGAC
1 TTCCTT-A-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
167387 TTCTTTACCTTCAACTCTTCTTGTGGGCTTTGAACC-TAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTG-ACCTTAGAGAC
* * * * *
167430 CTCCTTACCCTCAAGTCTGCCTATCGACTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
167473 TTATTTATCC-TCAAGTCTACCTTTTGGCATTGACAC-TAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * *
167516 TT-CTTCGCCTTC-AGTCTCCCTATTGGCTTTGACCTTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
167558 TTCCTCACCATT--AGTCTACTTGTTGGCTTTGA-CTCAGGAAAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTA-GAGAC
* * ** * *
167600 TTTCTGA-CTTTTAGTCTGCCTATTC-GCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
** * * * *
167642 TTCCTTA-CTTTTAGCCTGCCTATTGGCGTTT-ACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGC-TTTGACCTTAGAGAC
* ** * * * *
167684 TTTC-TA-CTTTTAGTCTGCTTATTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** * * *
167725 TTCTTTACCTT-TAGTCTTCCTATCATCTTTAACTTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** * *
167767 TTCCTCATCCTT--AGTCTACTTATAAGTTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
167809 TTCCTCACCATT--AGTCTGCTTGTCGGATTTGACCATAGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * *
167851 TTCCCTACCTT-TAGTCTGCTTGTCAGCTTTAATTTTGGAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
167893 TTCCTTACCTT-AAGTTTGCCTATCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** ** * * * *
167935 TTTCCTAACTTTTTTAGTCCACCTGTTGGCTTTTACCTT-GTACAT
1 -TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * *
167980 TTCTTTA-CTT-TAGTCTGCCTGTCAGCTTTGACCCTT-GAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * * *
168021 TTCCTTACCTT-TAGTTTGTCTGTTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * * *
168063 TT-TTTAACTTTTAGTCTACCTGTTGTCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
168105 TTCCTTACCTT-TAGTCTGCTTGTTGGCTTTAACCTTGAAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTT-AGAGAC
* * * * *
168148 TTCCTCAACCTT--AGTCTACCAGTAGGCTTTGACCTTGGAGAC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
168190 TTCCTTACCTT-TAGTCTACTTGTTGGC-TTGAACTTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTG-ACCTTAGAGAC
** * * * *
168232 TTCCCCATCCTT--AGTCTACCTATCGCCTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
168274 TTCCTCACCATT--AGTTTGCCTATCAACTTTAACCGT-GAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * ** * * *
168316 TTCCCCACCTT-TAGTCTGCTTGTCAACTTTAACATTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
168358 TTCATTACC-TCAAGTCTGCCTATAGGCTTTG-CCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * ** * *
168399 TTTTTTACCCTCAAGTCTGCCTATTGATTTTGACCTTGGACAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *** * * *
168442 TTCTTTACCCTCAAATCTATTTCTTGACTTTGACCTT-GTAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * *
168485 TTCCTTACCTTCAAATCTTCTTATTGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
168528 TTCTTTACCCTCAAGTCTGCTTGTCAGCATTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
168571 CTATTTACCCTCAAGTTTGCCTTTTGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
168614 TT-CTTCACCTT-TAGTCTCCCTATCGGCTTTGACCCTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
168656 TTCCTCACCTT-TAGTTTGCTTGTTGGCTTTGACCTTGGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
168698 TTCCTTACCTGT--AGGCTGCTTATCGGCTTTGACCCTAGTGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** ** *
168740 TTAC-TA-CTTTTAGTCTGCCTGTCGATTTTGACTCTT-GAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* ** * * * *
168781 TTCTTTACCTT-TTGTTTGCTTGCCGACTTTGACCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * * * *
168823 TTTCTAACTTTTAA-TTTGCCTGTTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
168865 TTCCTTA-CTTTTAGTCTGCCTATCAGCTTTAACCTTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
168907 TTCCTCAACCTT--AGTCTACCTATAGGCTTTGACCTTGGAGAC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
168949 ATCCTCACCATT--AGTCTGCCTGTCAGCTTTAACCATAGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
168991 TTCC-CACCTT-TAGTTTGCAAGTCAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
169032 TTCCTTACC-TCACGTTTGCCTATCGGCTTTGACCTTGGACAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
169074 TTCTTTA-CTTGAGGTCTGCTTGTCGAG-TTTGATCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCG-GCTTTGACCTTAGAGAC
* * ** * *
169116 TTCCTTA-CATCAAGTCTGCTTGTTAGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
169158 TTCCTTACGC-TCAAGTTTG-CTAGTCGACTTTGACCCTAAAGAC
1 TTCCTTAC-CTTCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
* * * * *
169201 TT--TTGCACCATT--AGTGTGCTTATCGACTTTGACCCTAGAGAC
1 TTCCTT--ACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
169243 TTCTTTACCATT--AGTTTGGCTATCGTCGGCTTTGACCCTAGAGAC
1 TTCCTTACC-TTCAAGTCT-GC-CT-GTCGGCTTTGACCTTAGAGAC
* * *
169288 TTTCTTACC-TCAAG-CTTGCCTGTCGGCTTTGAAC-AAGTAGAC
1 TTCCTTACCTTCAAGTC-TGCCTGTCGGCTTTGACCTTAG-AGAC
** * * * * **
169330 TTTGTTACCTTTAAGTTTGTCTATCAACTTTGATCC--AGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTA-GAGAC
* * * * *
169373 TTCCTGACCTT-TATTCTACCTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
169415 TTCTTTACCTTTAA-TCTGCTTGTTGGCTTTCACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * **
169457 GT--TT-GCTT---GTC-GACT-TTGACTCTAGAGACTT---TCC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCT-TTGA-CCTTAGAGAC
* * *
169491 TTACCTT--CTT--AGTTTGCCTGTCGGCTTTGACCTTAAAAAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * * *
169531 TTTTTTGCCCTCAAGTTTGCTTATCAGCTTTGACAC-TAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * * *
169574 TTACTTTACCTT-TAGTTTGTCCAG-AGGCTTTGACCTTTGAGAC
1 TT-CCTTACCTTCAAGTCTG-CCTGTCGGCTTTGACCTTAGAGAC
* * * * *
169617 TTCCTGACCTT-TAGTCTGCCTATCTGCTTCGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * * *
169659 TTGTTTTCCTT-TAGTCTACTTATTGGCTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** * *
169701 TTTCCTTACCTTCTTGGTCTGTTTGTTGGCTTTGA-CTCTGGAGAC
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * ** * *
169746 TTTCTTGCACC-T-ATGTTTGCCCATCGACTTTGACCTTGGAGAC
1 TTCCTT--ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
169789 TTGCTTA-CATGAAGTCTGTCTGTCGGCTTTAACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
169831 TTTTTTACCTT-TAGTCTGCCTGTCGGCTTTTACCTTGGAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** **
169873 TTATTTACTCTT-TGGTCTGTTTGTCGGCTTTGACC-TAGAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
169915 TTCCTTACCTTCAAATTTGCCTATCGACTATGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
169958 TTCCTTACCCTCAAGTCTTCTTGTCAGCTTTAACCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *** ** **
170001 TT-CTTAACCCTCAAGTCTG-CT-TAGAGACATCCTCTCTTTCATTC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCG-G-CTTTGAC-CTTAGAGAC
* * * * * * * * *
170045 TCCCTGTTGGCTTTC-A--C--CCTTTAGACTTCCTCACCTTTAGTCTGCC
1 TTCC--TT-ACCTTCAAGTCTGCCTGTCGGCTT--TGACC-TTAG--AGAC
** * ** * * **
170091 TGTCAGCTTTGACCTT-AGAGATATTCTAACTTTTAG-TCTG-CCTGTTG-GTT
1 T-TC--C-TT-ACCTTCA-AG----TCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
170141 TTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTAGTCTTTGACCTTAAAGAC
1 TT--CCTT----A---CCTT--C--AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
170197 TTTC-TA-CTTTTAGTCTACTTGTCGACTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
170238 TTCCTTACCTT-TAGTCTGCCTATCAACTTT-AACTTTGAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * *
170280 TTCCTCATCCTT--AGTCTACCTATCGGCTTTGACAC-TAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * *
170322 TTCCTCACCATT--AGTTTGCCTATCGGTTTTGA-CTGTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * ** *
170364 TTCC-CACCATT--ATTCTGCTTATAAGCTTT-AACTCTAGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
170405 TTCCTTACCTTC-AGTCTGCTTATCAGCTTTGACCCTAGCA-ATT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGA-C
* * * * * * ** *
170448 TTCCTAACCTTCTTAGTTTACCTATCAGCTTTGACAGT-GTAGAT
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* ** * * * * *
170492 TTCC-TAACTTTTAGTTTGGCGGTCAGTTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * * * *
170534 TTTCTAACATT-TAGTTTGCCTGTTAGCTCTAACTTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
170576 TTTCTTAGCTT-TAGTCTGCCTGTCGACTTT-AACTCTAAAGACC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGA-C
* * * * *
170619 TT-CTT-CTCTT-TAGTCTACTTATCGGCTTTGACCTTGGAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
170660 TTTCTCACCTT-TAGTTTGCCTAG-CGGCTTTGACCGTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCT-GTCGGCTTTGACCTTAGAGAC
* * * * * *
170702 TTCCCTACCTT-TAGTTTGCTTGTCAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * *
170744 TTCCTTACC-TCAAGTCTTCCTATCAGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *
170786 TTCCTTACC-TCAAGTCTGCTTGTCGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
170828 TTTCTTA-CATCAAGTCTGCTTGTCAGCTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
170870 TTCCTTATGC-TCAAGTTTGCCTGTCGGCTTTGGCCCTAAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
170913 TT-CTGCACCATT--AGTTTGCTTGTTGGCTTTGACCGTGGAGAC
1 TTCCT-TACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * * *
170955 TTTTTTATCTT-TAGTGTGGCTGTTGGCTTGGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
*
170997 TTCCTTACC-TCAAGTCTGCCTGTCGGCTTTGAACATT-GAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTG-ACCTTAGAGAC
** * * * *
171039 TTTGTTGA-CTTCAAATTTGCCTATCGACTTTGATCC-TAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * * *
171082 TTCCTAACCCTT--ATTCTACCTATCGGCTTTGA-CTTTGAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* *** * *
171124 TT-CTTTCCTTTTTGTCTGCCTGTTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * ** * * **
171166 AT-C-T-GGTT---GTC-GACT-TTGAATCTAGAGACTT---TCC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCT-TTGA-CCTTAGAGAC
* * * ** *
171200 TTACCTT---TT-TAGTTTGCTTGTCGTTTTTGACCCTAAG-GAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
** * * *
171240 TTTTTTACCCTCAAGTCTGCTTATCGGCTTTGACAC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * * *
171283 TTGCTTTACCTT-TAGTTTTCTTAG-AGGCTTTGACCCTT-GAGAC
1 TT-CCTTACCTTCAAGTCTGCCT-GTCGGCTTTGA-CCTTAGAGAC
* ** * * * * *
171326 TTCC-TAACTTTTATTCTGCCTATCTGCTTTGACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *** * *
171368 TTCATTTCCTT-TAGTCTATTTGTCGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
171410 TTTCCTTACCTTCTTGGTCTGCTTGTTGGCTTTGACCTTGGAGAAT
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAG-AC
* * * *
171456 TTCTTATACC--CAAGTCTGCCTGTCGGTTTTGACCTTGGAGAG
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * *
171498 TTGCTTACATT-ATGTCTGTTTGTCGGCTTTAACCCTAGAGAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAG-AC
* * * * * *
171541 TT-TTTACCTT-TAGTGTGCTTGTCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** *
171582 TTTCTCACATT-TAGTCTACCTGTCTACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
171624 ATT-GTGA-CTTTTAGTCTGCCTGTTGGCTTTGA-CTCTGGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * * * * *
171666 TTCCTT-GCTTTAACTCTACTTGTTGTCTTTGACCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * * *
171708 TTTCTTATTTTCAAATCTACCTGTCAGCTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * *
171751 TTCCTTACCCTCAAGTC-GTCCTATCATCTTTAACCTTATAAAC
1 TTCCTTACCTTCAAGTCTG-CCTGTCGGCTTTGACCTTAGAGAC
* *
171794 TT--TTGAACCCTCAAGTCTGCCAT-TTGGCTTTGACCTTAGAGAC
1 TTCCTT--ACCTTCAAGTCTGCC-TGTCGGCTTTGACCTTAGAGAC
* * * *
171837 TTCCTCT-CCTT-TAGTCTCCCTATCGGCTTTGACCCGT-GAGAC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * * * * * * *
171879 TTTCTCACCTT-TAGTCGGCGTGTCAGCTTTGACCATGGAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** * * * *
171921 ATT-C-TAGGTTTTAGTTTGCCTGTTGGCTTTGACCATGGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** *
171963 TTTCTCACATT-TAGTTTGTTTGTCGGTTTTGATCC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * ** * * * *
172005 TTTC-T-GCTTTTAGTCTACTTGTCGGCTTTTACCTTGGATG-C
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGA-GAC
* * * * * *
172046 TTCCTTACCTT-TAGTCTGCCTGTCAGCTTTAACTTTGGATAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
172088 TTCCTCATCCTT--AGTCTACCTATCGGCTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
172130 TTCCTCACCATT--AGTCTGACTGTCGGCTTTGACCATAGAGAT
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
172172 TTCCCTACCTT-TAGTCTACTTGTCAGCTTT-AACTATGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
172214 TTCCTTACCTT-AAGTCTGCCTATCAGCTTTGACCCTAGTGATT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* * * ** * * * *
172257 TTCCTAACCTTCTTAGTCTACCTGTCAACTTTGACCCTACAAAT
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
172301 TTCC-TAACTTTTAGTCTGCCTATCAGTTTTGACTCTT-GAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* ** * **
172343 TAT-CTGA-CTTTTAGTCTACCTGTTAGCTTTGACCTTAGAGAC
1 T-TCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
172385 TTTCTTACCTT-TAGTCTACCTATCAGCTTT-ACCCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAG-AGAC
* * * * * *
172427 TTACTCATCCTT--AGTCTACTTGTCGACTTTGACCTTAGAGAT
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
172469 TTCCTCACCCTT--AGTCTGCTTGTCGACTTTGACCGTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * ** *
172511 TT-CTCCACCTT-TAGTCTGCTTGTTAGC-TTCAAATCTGGAGAC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * ** * *
172553 TTCCTTACC-TCAAGTCTTCCTATTTGTTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
172595 TTCCTTAACTT--AGATCTGCTTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAG-TCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
172637 TTCCTTA-CATCAAGTCTGCTTGTCAGCGTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * * *
172679 TTCTTTATGC-TGAAGTCTTTCTATCGGCTTTAACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
172722 TTCCGCACGATT--AGTCTGCCTATCGACTTTGACCCTAAAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
172764 TTCTTTA-C--CAA-TATTGCAGCTGTCGACTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGT-CTGC--CTGTCGGCTTTGACCTTAGAGAC
* * *
172806 TTCCTTACC-TCAAGTCTGCCTG-CTAGCTTTGAACTT-GAAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTC-GGCTTTGACCTTAG-AGAC
* * * * * * * * *
172848 TTTCTTACCCTCAAATTTCCCTATCGGCTTTGATCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
172891 TTCCTGACCTT-TATTCTACCTGTCAGCTTTGACCTTCGAGTC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
172933 TTCTTTACCTT-TAGTTTGCCTATTGGCTTTGACCCTAGAGA-
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * **
172974 TGT-C-TGCCTATC--GGCTTCGACCT-TGGAGACTTCTTTACCTTTAGTCTAC
1 T-TCCTTACCT-TCAAGTC-T-G-CCTGTCG-G-C-T-TTGACC-TTAG-AGAC
* * * * ** * **
173023 TAATCAGCTTTAACCCTAAAGACTTCC--TCAACCTTAGTCTACCTGTAG-GGT
1 T--TC--C-TT-ACCTTCAAGTCTGCCTGTC-GGCTT--T-GACCT-TAGAGAC
* ** *
173074 TTGACCTTGGAGACTTCCTCACTATTAGTCTGCCTGTTAGCTTTGACCGTAGAGAC
1 TT--CCTT----A---CCT-TC-A--AGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * *
173130 GTTCC-CACCTT-TAGTCTACATTTTAGCATT-AGCTCTAGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
173172 TTCCTTACC-TCAAGTCTGCTTATCGACTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
173214 TTCCTTACC-TGAGGTCTACTTGTCGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
173256 TTCTTTACATT-AAGTCTGCTTGTCAGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
173298 TTCCTTATGCTT-AAGTCTGCCTATCGGCTTCGAACTT-GAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* ** * * * *
173341 TTTCGCACCATT--AGTCTGCTTGTCGACTTTGACCTTGGAAAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * **
173383 TTCTTTACCTT-TTGTGTGTCTGTCCACTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
173425 TTCCTTA-CTACAGGTCTGCCTGTCGACTTTGAACTTGGATAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
173467 TTTCTTACCCTCAAGTCTGCCTTTCAGCTTTGATCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
173510 TTCCTAACCTT-TATTCTGCTTATCGACTTTGACCTTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * * *
173552 TTTCTTA-CTTTTAGTTTGACTATTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * ** *
173594 CTCCTCATCTT-TAGTCTACTTATCACCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *** *
173636 TTCCTCACCATT--AGTCTGCCTGTCAATTTTGA-CTGT-GAAAAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCT-TAG-AGAC
** * * * *
173678 TTCCCCACCTT-TAGTCTGCTTGTCAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
173720 TTCTTTTCC-TCAAGTCTGCCTATCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * ** *
173762 TTTTTTACCCTCGAGTCTGCCTATTGATTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * * * * *
173805 TTCTTTACCTTTTAA-TCTATTTCTCGACTTTGACATTGGTGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
173848 TTCCTTACCTTCAACTCTTCCTGTTGGCTTTGACCTTAGGGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
173891 TTCCTTACCCTT-TAGTCTGCCTGTCAGCTTTTAACCTTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGC-TTTGACCTTAGAGAC
** * * * * *
173935 TTATTTACCCTCGAGTCTGCCTTTTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
173978 TT-CTTCACCTAC-AGTCTCCCTGTC--C---GACCCTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
174015 TTCCTCACCTT-TAGTCTTCTTGTCGGCTTTGACCTTGGAAAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
174057 TTTCTTATC-TCTAGTCTGCCTCTCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
174099 TTTC-TA-CTTTTAGTCAGCTTGTCGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** * * *
174140 TTCTTTACCTT-TAGTCTTCTTGTTAGCTTTAACTTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
174182 TTTCTCATCCTT--AGTCTACCTATCGGCTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** *
174224 TTCCTCACCATT--AGTCTGCCTGTTAGCTTTGA-CTGTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
** * * * ** * *
174266 TTCCCCAACTT-TAGTCTGCTTGTTAGCTTT-AACTCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
174308 TTCCTTACCTT-AAGTTTGCCTATCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
174350 TTTCCTAACCTTCTTAGTCTACCTGTCAGCTTTGATCC-TACA-A-
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * ** * * **
174393 TTTCTTAACTTTTAGTGTGCCTATCGATTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *** * * *
174436 TT-TTTGA-CTTTTTGTTTGCCTGTCGGCTTTGACCTTTGAGAA
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
174478 TTCCTTACCTT-TAGTTTGCCTATCGACTTTGATCGTGGACAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** ** ** * *
174520 TTCCCCACCCTT--AGTCTGTTTGTCAACTTT-AACTCTCGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * *
174562 TTCCTTACCTT-AAGT-TCGCCTATCGGCTTTGACCCTAGAGATT
1 TTCCTTACCTTCAAGTCT-GCCTGTCGGCTTTGACCTTAGAGA-C
* * * * * *
174605 TTCCTAACCTTCTTAGTCTACCTATCGGCTTTGACCCTACAGA-
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
174648 TTTCTTAACATT-TAGTTTACCTGTCGGCTTTGACCTTGGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * * *
174691 TTTC-TAACTTTTAGTTTGCCTCTTGGCTTTGACTCTT-GAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * *
174733 TTTCTTACCTT-TAGTGTGGCTGTTC-GCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTG-TCGGCTTTGACCTTAGAGAC
* * * * * * * * * *
174775 TTCTTTACATT-TAGTGTGGCTATCCGTTTTGACCATAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
174817 TTCCTTACC-TCAAGTCTGCCTGTCGACTTTGAACTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
174859 TTTCTTACCCTCAAGTCTGCCTATCAGCTTTGATCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
174902 TTCCTGACCTT-TATTTTGCCTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
174944 TTCCTTGCATT-TAGTTTGCCTATTGGCTTTAACCTT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * * ** *
174986 TTCCTTATCC-TC-AGTCTACCTATTGCCTTCGAAGTTAGTGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
175028 TTCCTCACCATT--AGTCTACTTGTTGACTTTGACCGT-GAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * * ** *
175070 TTCCCCACCTT-TAGTCTGCTTATTAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
175112 TTCCTTACC-TCAAGTTTGCCTATTGACTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** *
175154 TT-TTATACCCTGAAGTCTACCTGTCAACTTTGACCCTAGAGACAC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAG--AC
* * * * * * * * *
175199 TACTTTACCTT-TAGTTTGCCAGTCGACTATGACCTTAAAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
175241 TTCATTACCTT-TAGTCTGCCTATCTGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
175283 TTTCTTACCTT-TAGTCTGCTTGTTGGCTTTGACCATTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACC-TTAGAGAC
* * * * * *
175326 TTTCCTTACCTTCTTAGTCTACTTGTTGGCTTTGGCCTTAGAAAC
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
175371 TT-TTTACCCAT-AAGTCTGCTTATCGGCTTTGACCTTGGAAAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * * *
175413 CTGCTTACGTT-AAGTTTGTCTGTCAACTTTAACCCTAGAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** * ** *
175455 TTCTTTACCTT-TAGTCTACTTGTTAGTTTTGAAGTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
175497 TTCTTTACCCTCTAGTCTGTTTGTCGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
175540 TTCGTTACCTTCAAGTCTGCCTGTCAGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * ** *
175583 TTCCTTACCCTCAAGTCTGTTTATCAACTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * * *
175626 TTTTTTTCCCTCAATTCTGCTTTTTGGCTTTGACCATAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
175669 GTCCTCACCTT-TAGTCTACCTATCAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
175711 TTCCTCACCTT-TAGTCTACCTATCGGCTTTG-TCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** * * * * *
175752 TTTCTGA-TTTTTAGTTTGCCTGTTGGCTTTTACCTTAAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
175794 TTCTTTAGCTT-TAGTTTGCCTATCGACTTTGGCCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * * *
175836 TT-TTTA-CTTTTAGTCTGTCTGTTGGGTTTTACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * ** * * * *
175877 TTCCTTACCTT-TTGTCTACCTATCAACTTTAACCATGGAGTC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
175919 TTCCTCATCTT-TAGTCTACTTATCGACTTTGACCTTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
175961 TT-CTTCACCATT--AGTCTGCCTATCGGCTTTGACCATAAAGAC
1 TTCCTT-ACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** * * * *
176003 TTCTTTACCTT-TAGTTTGCTTGTCAACTTTAACTTTGGAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
176045 TTCTTTACC-TCATGTCTGCCTTTCAGCTTTAACCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** * * * *
176087 ATTCCTAACCTTCTTAGTCTATTTGTCTGCTTTGACCCTACAGAT
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *** * * * *
176132 TTCC-TAACTTTTTGT-TAGCATGTCGGTTTTAACCCTTA-AGAA
1 TTCCTTACCTTCAAGTCT-GCCTGTCGGCTTTGA-CCTTAGAGAC
* * *** *
176174 TTCCTTACCTT-TAGTCTGCCTATCTATTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
176216 TTCCTTACCTT-TAGTTTGCCTGTCGGCTTTGACCTTGGACATT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* * * * * * *
176259 TTCCTTACCTTCTTAGTTTGCTTGTTGGCTTTAACCCTAAAGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
176303 TTTCTTACCCTAAAGTCTACCTATTGGCTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * * *
176346 TTGCTTA-CGTCAAGTCTGTTTATCAGCTTTGATCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
176388 TTCCTCACCTT-TAG-CTTGTCTGTCGGCTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTC-TGCCTGTCGGCTTTGACCTTAGAGAC
* ** ** * * *
176430 TTCTTTACCTTTTAGTCTGTTTGTCGGCTTTGATCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * * * *
176473 TTCTTTTGCATAAAGTTTGCCTGTCGGCTTTAACCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
176516 TTCCTTACCCTCGAGTCTGCTTGTCGGCTTTAACCTCAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * ** * *
176559 TTTTTTACCCTCAAGTATGCCTTTTGGCTTCAACCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
176602 TTCCTTACCTT-TAGTTTGCTTATCGGCTTTGAGCC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * * *
176644 TT-TTTCACATT-TAGTCTACCTGTCGGCTTTGACCCTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * ** *
176686 TTTC-TAACTTTTAGTTTGCCTATTAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
176728 TTCCTTACCTT-TAGTTTGCTTATCGGCTTTGAACC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTG-ACCTTAGAGAC
* ** * * *
176770 TTTC-TA-CTTTTAGTCTGCTTGTCGACTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * * *
176811 TTCCTCACCTTTTA-TCTGCCTATCGGCATTAACCTTGGAGCC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * **
176853 GTCCTCATCCTT--AGTCTACTTATCACCTTTGACCTTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
176895 TTCCTCACCATT--AGTCTGCCTATCGGCTTTGACCAT-GAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * ** * * *
176937 TTCCCCATCGTT--AGTCTGGTTGTCGACTTTGACCTTGGAAAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * *
176979 TTTC-TAACTTTTAGTCTGCTTGTTC-GCTTTGACTTTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTG-TCGGCTTTGACCTTAGAGAC
** * * * * *
177021 TTTTTTAGCTT-TAGTCTGCTTGTCGTCTTTG-CCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
177062 TTTC-TA-CTTTTAGTCTGCCTATTGGGTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * *
177103 TTCCTTACCTT-TTGTCTACCTATCGGATTTAACCTTGGAGTC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
177145 TTTCTCATCTT-TAGTCTACCTATCGACTTTGACCTTCGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
177187 TT-CTTCACCTT--AGTCTGCCTATCGACTTTGACCATGGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
177228 TT-CTGCACCTT-TAGTCTGCTTGTCAGCTTTAACTTTGGAGGC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
177270 TTCTTTACC-TCATGTCTGCCTATCGGCTTTGACCCTCGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * * *
177312 GTTCCTAACCTTCTTAGCCTACTTGTCAGCTTTGACCCTACAGAT
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *** * * * *
177357 TTCC-TAACTTTTTGT-TAGCCTATC-GATTTCAACCCTTA-AGAA
1 TTCCTTACCTTCAAGTCT-GCCTGTCGGCTTT-GA-CCTTAGAGAC
* * * *
177399 TTCCTTACCTTTAA-TCTGCCTATCAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
177441 TTCCTTACCTT-TAGTTTGCTTGTCGGCTTTGACCTTGGACATT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* * * * ** * *
177484 TTCCTCACCTTCTTAGTTTGCTTGTTTGCTTTGACCCTAGAAAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
177528 TTTCTTACCCTGAAGTCTGCCTATTGGCTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
177571 TTGCTTA--TGTCAAGTTTGTCTATCGGCTTTGATCTTAGAGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
177613 TTCTTTACCTT-TAGTATGTCTGTCGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** ***
177655 TTCTTTACCTTTTAGTCTATTTGTCGGCTTTGACC-TAGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTA-GAGAC
* * * * * *
177698 TTCCTTACCATAAAGTCTACCTATCGGCTTTGACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
177741 TTCCTTACCCTCAAGTTTGCTTGTCGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
177784 TTCTTTACCCTCAAGTCTACCTTTTGGCTTTAACCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
177827 TTCCTCACCTT-TAGTCTGCTTATCGACTTTGAGCC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * ** * * *
177869 TT--TTTCATATTTAGTCTGCTTGTCGGCTTTGACCCTAAAGAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
177911 TTTCTGA-CTTTTAGTCTGCCTGTTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
177953 TTCCTTACCTT-TAGTTTGCCTGTTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
177995 TT-TTTA-CTTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
178036 TTCCTTACCTTTTA-TCTGCCTGTCGGCATTAACCTTGGAGCC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * *
178078 TTCCTCATCCTT--TGTCTACTTATCACCTATGACC-CAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *
178119 TTCCTTACCATT--AGTCTGCCTGTCAGCTTTGACCGT-GA-AGC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* * * * * *
178160 TTCC-CATCTT-TAGTCTGCTTGTTGGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * *
178201 TTTCTTTCC-TCAAGTCTGCCTATCGGCTTTGATCC-TAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * * *
178243 TTTCTTACCCTCAAGTCTGCTTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
178286 TTGCTTTACCTT-TAGTTTGCCCATTGGCTTTGACCTTAGAGAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
178329 CTCGTGACCTGT--AGTCTGCCTATCTGCTTTGACCCTAGAAAC
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *
178371 TTCCTTACCTT-TAGTCTGCCTGTCAGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
178413 TTCCTCACCTT-TAGTCTACCTATTGGCTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
178455 TTCCTCACCTT-TAG-CTTGCCTGTCGACTTTG-GCTTTGAAGAC
1 TTCCTTACCTTCAAGTC-TGCCTGTCGGCTTTGACCTTAG-AGAC
* ** * * *
178497 TT-TTTGA-CTTTTAGTCTACTTGTTGGCTTTGACCTT-GAAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * * * * * *
178539 TTCTTTAGCTT-TAGTTTGCTTGTCGACTTTGACCCTAAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
178581 TT-TTTA-CTTTTAGTCTGCCTATCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
178622 TTCCTTACCTT-TAGTATGCCTGTCGACTTTAACCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
178664 TT-CTTCATCCTT--AGTCTACCTATCGACTTTGACCCTAGAGAC
1 TTCCTT-A-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
178706 TT-CTTCACCATT--ACTCTGCCTGTCGACTTTGACCAT-GAAGAC
1 TTCCTT-ACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * * * * *
178748 TTCCCCATCTT-TAGTTTGCTTGTCAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
178790 TTCCTTACC-TCATGTCTGCCTTTCGGCTTTGACCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * * *
178832 TTTCCTAACTTTCTTAGTCTACTTGTCGGCTTCGA-GTTTG-TAC
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
178875 ATTTCTTAACTTTTAGTCTGCCTATTGGCTTTGACGCTT-GAGGA-
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGA-GAC
* * * * *
178919 GTCCTTACCTT-TAGTCTGCCTATCGGTTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * **
178961 TTTCTGA-CTTTTAGTCTACTTGTTAGCTTTG-CCTTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACC-TTAGAGAC
* * * * * *
179003 TTCTTTACCATT--AGTTTGCCTATCGGCTTTAACCTTGGAGAT
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
179045 TTCCTCATCTT-TAGTCTACCTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
179087 TTCCTCACCTT-TAGTCTACTTGTCAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * *
179129 TTTCTTACC-TCAAGTCTGCTTATCGACATTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
179171 TTCCTTACC-TCAAGTTTGTTTATCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * ** * *
179213 TTTCTTA-CATGAAGTCTACTTGTTAGCTTTAACCTCAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *
179255 TTCCTTACGC-TCAAGTCTGCCTGTCGGCTTTGACCCTAAAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *** * ** * *
179298 TTTCGCCCCATT--AGTTTGCCTGTTAGCTTTGACCCTGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * * * *
179340 TTTTTTACCTT-TAGTATGGCTGTCCGTTTTGACCCTAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
179382 TTCCTTACC-TCAAGTTTGCTTGTCAGCTTTGAACTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
179424 TTTCTTACCCTCAAGTCTGCCTATCGGCTTTGATCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * * *
179467 TTCCTAACCTT-TATTGTACTTGTCGACTTTGACCTTGGTGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
179509 ATCTTTACCTT-TAGTCTGCTTGTTGGCTTTGACCTTAGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
179551 AT-C-TATCTATC-GGCTTTGACGCTGTAGAG-TTT--CCTT----A-
1 TTCCTTACCT-TCAAG-TCTG-C-CTGTCG-GCTTTGACCTTAGAGAC
* * * * * *
179588 --CCTT--CTT--AGTTTGCTTGTCGACTTTAACCCTAGATAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * ** * * *
179625 TTTTTTACCCTCAAGTTTGCTTATCAACTTTGACCCTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
179668 TTGCTTTACCTTC-AGTTTGCCCGTCGGCTTTAACCTTAGAGAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * **
179711 TTCATGACCTTTAACT-TGCCTATCTACTTTGACCTTCA-AGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTT-AGAGAC
* * * ** *** *
179753 TTCCTTACCTT-TAGTTTGCCTATTAGCTTTGATGATGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
*** * * *
179795 TTACCTTACCTTTTTTGTCTGCTTGTTGGCTTTGACCCT-GAAGAC
1 TT-CCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * ** *
179840 TAT-CTTACCCTCAATTTTGGCTGTCGATTTTGACCTTGGAGAC
1 T-TCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
179883 TTGCTTA-CGTCAAGTCTGTCTGTCGGCTTTGACCATGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * ** ** * * *
179925 TT-TTCTACCTT-TAGTCCGTCTACCAACTTTGACCCTGGAGTC
1 TTCCT-TACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
179967 TTCTTTAACC-TCTAGTATGTTTGTCGGCTTTGACCCTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
180010 TTTC-TA-CTTTTAGTCTGCTTGTCGGCTTTGACCTTCGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
180051 TTTCTTACCTT-GAGTCTACTTGTCGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
180093 TTCCTCATCCTT--AGTCTACCTATCGCCTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
180135 TTCCTCATCATT--AGTCAGCCTATCGACTTTGATCGT-GAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** * * * * *
180177 TTCCCCACCTT-TAGTTTGCTTGTCAGCTTT-AACTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * **
180219 TTCCTTACC-TCAAGTCTACTTATCGATTTTGACTCTT-GAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGAC-CTTAGAGAC
* * * * *
180261 TTTCTTACCCTCAAGTCTACCTGTCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
180304 TTTCTTTACCTTTAA-TTTGCCCGTCGACTTTGACCCTAGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *** *
180347 TT-CTTAACCTT-TAGTCTGCCTATATACTTTGACCCTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
180389 TTTCTTACCTT-TAGTCTGCCTGTCGGCTTTAACCTTGGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* *
180431 TTCCTTACCCTCAAGTCTGCCAT-TTGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCC-TGTCGGCTTTGACCTTAGAGAC
* * * * * * *
180474 TTCCTCACTTTC-AGTCTACCTATCGACTTTAACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * *
180516 TTCCTCACCTT-TAGTCTGTTTGTCGGCTTTAACCATAAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * *
180558 TTTC-TAACTTTTAGTCTGCCTATTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
180600 TTCCTTACCTT-TAGTCTGCCTGTCAGCTTTAACCAT-GAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * * *
180641 TT-TTTA-CTTTTAGGCTGCTTGTTGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
180682 TTCCTTACCTT-TAGTCTGCTTGTCGGCTTTAACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
180724 TTCCTCATCCTT--AGTCTACTTATCGCCTTTGACATTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** *
180766 TTCCTCACCATT--AGTTTGCCTGTCAACTTTGACCGT-GAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
** ** * *** * *
180808 TTCCCCA-CTTTTAGTCTGCTTGTTATCTTT-AACTCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
180850 TTCCTTACC-TCAAGTATGCCTATCAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
180892 TTTCTTACCCTCAAGTCTACCTGTCAGCTTTGACCTT-GAAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * ** * * *
180935 TTGCTTTACCTT-TAGTTTGCCAATCGGATTTGTCCCTAGAGAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
180978 TTCCTAACCTT-TAGTCTACCTATCTGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
*** * * * * * *
181020 TTCCTTACCTT-TTTTCTTCTTGTCGGCTTTAACCTTGGGGATT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGA-C
* * * * * * * *
181063 TTTCTAATCTTCTTAA-TCTGCTTATTGGCTTTAACCTTAGAAAC
1 TTCCTTACCTTC--AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * * *
181107 TTTCTTACCATGAAGTCTACCTATCAGCTTTGACCCTGGACAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
181150 TTGCTTA-CTT-AAGTCTATCTGTCGACTTTGACCCTAGAGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
181191 TTCTTTACCTT-TAGTCTGCCTGTGGGCTTTGACCCT-GAAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* ** * * * * * * *
181233 TTCTTTACCCTCTGGAGACTTCGT-TAC--ATTTAAGTCTGCATGTCA-AC
1 TTCCTTA-CCT-TCAAGTCTGCCTGT-CGGCTTTGA-CCT-TA-G--AGAC
* ** * * * * * *
181280 TT--TGACCCTGGAGAATCCTTACC-CTCAAG-TCTG--CTT-GTCGAC
1 TTCCTTA-CCTTCA-AGT-C-TGCCTGTC-GGCTTTGACCTTAG-AGAC
* * * * * * * ** *
181322 TT--TAACCTTGGAGATTTCTTTACC-CTCAAG-TCT-ACCTT-TTGGC
1 TTCCTTACCTT-CA-A-GTC--TGCCTGTC-GGCTTTGACCTTAGAGAC
* * * * ** ** *
181365 TT--TGACCCTAAAGACTTTCT-TACCATCAATTTGCCTATCGGCTTTGTCCTTAGAGCC
1 TTCCTTACCTTCAAGTCTGCCTGT--CGGC--TTTG---A-C--CTTAG-----AGA--C
* * * * * *
181422 TTCCTCACCTT-TAGTCTGCCTATCGACTTTGACCTTTGAGAA
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
181464 TT-TTTGA-CTTTTAGTTTGCCTG-CTGACTTTGACCTTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTC-GGCTTTGACCTTAGAGAC
* * * * ** *
181506 TTTCTCAGCTT-TAGTCTGTTTATCGGCTTTGA-CTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* ** * * * * * *
181548 TTTC-TA-CTTTTAGTCTGCTTGTTGACTTTTACGTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * *
181589 TTCCTTA-CTTTTAGTTTGCCTGTCGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
181631 TTCC-T-CATTCTTAGTCTACTTATTGGCTTTCACCCTAGAGAC
1 TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * *
181673 TT-CTTCACCATT--AGTCTACCTGTCAGCTTTGA-CTGTGGAGAC
1 TTCCTT-ACC-TTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * * *
181715 TTCCCTACCATT--AGTCTACTTGTCAGC-TTCAACTTAGGAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTA-GAGAC
* * * * *
181757 TTTCTTACC-TCACGTCTGCCTATCAGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * * *
181799 TTTCCTAACCTTCTTAGTCTACTTGTCGCCTTTGACCCTATAGAT
1 -TTCCTTACCTTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * *
181844 TTCC-TAAATAT-TAGTCTACCTGTCGGCTTTGACCCTT-GAAAA
1 TTCCTTACCT-TCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGAC
* * ** *
181886 TTCCTTACCTT-TAGTCTGCCTATCTACTTTGA-CTCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * * *
181928 TTCCTTACCTT-TAGTCT-TCTATCAGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * ** * *
181969 TTTCATTACCTTTTTAGTCTACTTGTTAGCTTTAACCCTAGAGAC
1 -TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** *
182014 TTTCTTACCCTT-AAGTCTGCTTGTCGATTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * *
182057 TTGCTTA-CGTCAAGTCTGTTTGTCGGCTTTGACC-TCGAAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * * *
182099 TTCTTTACCTT-TAGTCTGCCTGTCAGCTTTGACCCTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
182141 ATT-TTTACCCTCTAGTCTGTTTGTCGGCTTTGACCCTAGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
182184 TTCCTTACCTTAAAGTTTTCCTGTCGGCTTTGACCTTAGACAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
182227 TTCCTTACCCTCGAGTCTGTCTATCGGCTTTAACCTTCGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
182270 TTCTTTACCCTCAAGTCTACCTTTTGGCTTTGCCCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * *
182313 TTCC-T-CTCTTTTAGTCTGCCTGTCGACTTTGACCGTAGAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * *
182355 TTTTTTACCTT-TAGTCTGCTTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** * * * * *
182397 TTTCTGA-CTTTTATTCTGCTTGTTGGCTTTAACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
182439 TTCTTTACCTT-TAGTCTGCCTGTTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * **
182481 TT-TTTA-CTTTTAGTCTACTTGTCAACTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
182522 TTCCTCACCCTT--AGTCTGCCTGTCGGGTTTAACCTT-GAAAAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGAC
* * * ** *
182564 TTCCTCATCCTT--AGTCTACCTATCACCTTTGACCCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * ** *
182606 TTCCTTACCATT--AGTTTGCCTATCGACTTT-ATTTGTAAAGAC
1 TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * ** *
182648 TTTCC--ACCTT-TAGTCTGCTTATCAACTTT-AACTCTAGAGAC
1 -TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
182689 TTCCTTACC-TCAAGTATGCCTATCGGCTTTGACCCTA-AGGAT
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGA-GAC
* * * *
182731 TTTCTTACCCTT-AAGTTTGCCTGTCAGCTTTGACCTTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * ** * *
182774 TTGCTTTA-CTTTTAGTTTACCCATCGACTTTGACCCTAGAGAC
1 TT-CCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
182817 TTCCTGACCTT-TAGTCTGCCTATCTGCTTTGA-CTCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * *
182859 TTTCTTACC-TCTAGTCTGCCTGTCGGCTTTGACCTTGGATAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * * * * *
182901 TTTCCTTACCTTTTTAGTCTACTTGTTGGCTTTGACCTTTGAAAC
1 -TTCCTTACC-TTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** *
182946 TTTCTTATCC-TCAAGTCTAACTGTCGGCTTTGACCTTGGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
182989 TTGCTTA-CGTCAAGTCTGTCTGTCGACTTTGGCCCTAGAGGC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
183031 TTCTTTACCTT-TAGTCTGCCTGTCGACTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * ***
183073 TTTTTTACCCTT-TAGTCTATTTGTCGGCTTTGA-CTCTAGAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* *
183116 TTCCTTACCTTCAAGTCTACTTGTCGGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
183159 TTCCTTGTCC-TCAAGTCTACCTATCAGCTTTAACCTTAGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * ** ** * **
183202 TTCTTTACCCTCAAGTCTGCCTGTTAGCAATGGCCCAAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
183245 TTCCTCACCTTC-AGTTTGCTTGTTGGCTTTGA-CTATAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCT-TAGAGAC
* * * **
183287 TTTCTCACCTT--AGTCTTCCTGTTAGCTTTGACCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * * *
183328 TT--TTTCACTTTTAGTTTGCCTGTCGACTTTGACCGTAGAGAC
1 TTCCTTAC-CTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
183370 TTCCTTACCTT-TAGTCAGCTTGTCGGCTTTGACCTTGGATA-
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * * *
183411 TTTCTTGACCTT-TAGTATGCTTGTCGACTTTGACCCTGGAGAC
1 TTCCTT-ACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
** * *
183454 TTTATTACCTT--AGTCTGCCTATCGGCTTTGACCTTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* ** * *
183495 TTCCTTA-CTTCTAGTCTGCCTGTTAGCTTTGACATTGGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * *
183537 TTTCTTAGCC-TCAGGTCTGCCTGTCGGCTTTAACCTTAAAGAC
1 TTCCTTA-CCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
183580 TTAC-TACC-TCAAGTCTACCTGTCAGCTTTGACCTTGGAAAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * *
183621 TTCCTTACCCTCAAGTCTGCTTATTGGCTTTGACCCTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
* * * * * *
183664 TTCTTTGCCTT-TAGTCTGCCTATCAGCTTTGATCTTAGAGAC
1 TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
183706 TT
1 TT
183708 TTCCACCTTT
Statistics
Matches: 22208, Mismatches: 6189, Indels: 3175
0.70 0.20 0.10
Matches are distributed among these distances:
30 7 0.00
31 1 0.00
32 7 0.00
33 1 0.00
34 11 0.00
35 19 0.00
36 32 0.00
37 70 0.00
38 34 0.00
39 87 0.00
40 265 0.01
41 2051 0.09
42 12636 0.57
43 5388 0.24
44 538 0.02
45 726 0.03
46 58 0.00
47 57 0.00
48 20 0.00
49 25 0.00
50 15 0.00
51 14 0.00
52 15 0.00
53 21 0.00
54 27 0.00
55 19 0.00
56 15 0.00
57 16 0.00
58 15 0.00
59 11 0.00
60 1 0.00
61 4 0.00
62 2 0.00
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (43 bp):
TTCCTTACCTTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC
Found at i:154264 original size:82 final size:83
Alignment explanation
Indices: 154132--154290 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 83
154122 AGTTTGTCTG
** * * *
154132 TCAGCTTTGACTTTGGAGACATTCTGACTTTTAGTCTATCTGTTGGCTTTGACCTGGGAGACTTT
1 TCAGCTTTGACCCTAGAGACATTCTGACTTTTAGTCTATCTGTCGACTTTGACCTGGGAGACTTT
154197 CTTACTTTTAGTCTACTA
66 CTTACTTTTAGTCTACTA
* * *
154215 TCAGCTTTGACCCTAGAGACTTTCT-ACTTTTAGTCT-GCTTGTCGACTTTGACCTTGGAGACTT
1 TCAGCTTTGACCCTAGAGACATTCTGACTTTTAGTCTATC-TGTCGACTTTGACCTGGGAGACTT
*
154278 TTTTACTTTTAGT
65 TCTTACTTTTAGT
154291 TTGCCTGTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
81 1 0.02
82 44 0.67
83 21 0.32
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.44
Consensus pattern (83 bp):
TCAGCTTTGACCCTAGAGACATTCTGACTTTTAGTCTATCTGTCGACTTTGACCTGGGAGACTTT
CTTACTTTTAGTCTACTA
Found at i:155371 original size:45 final size:44
Alignment explanation
Indices: 155179--155381 Score: 175
Period size: 45 Copynumber: 4.7 Consensus size: 44
155169 TTTGCCTGTC
* * ** * *
155179 GGCTTTGACCCTAGAGACCATCCTTACCTTCTTAGTTTACGTGTT
1 GGCTTTGACCCTAGAGA-CTTTCTTACCTTCTTAGGCTGCATGTT
* * * * * *
155224 GGCTTTGACCCTAGAGACATCCTGACC-T-TTA-GTTGCCTATAT
1 GGCTTTGACCCTAGAGACTTTCTTACCTTCTTAGGCTGCATGT-T
* * *
155266 -GCTTTGACCCTTGAGACTTTCTTACC-T-TTAGTCTGCATGTC
1 GGCTTTGACCCTAGAGACTTTCTTACCTTCTTAGGCTGCATGTT
* * *
155307 GGCTTTGACCTTGGAGACTTTTCTTACCTTCTTAGGCTGCTTGTT
1 GGCTTTGACCCTAGAGAC-TTTCTTACCTTCTTAGGCTGCATGTT
155352 GGCTTTGACCCTAGAGACTTTCTTACCTTC
1 GGCTTTGACCCTAGAGACTTTCTTACCTTC
155382 AAGTTTGTCA
Statistics
Matches: 131, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
41 31 0.24
42 24 0.18
43 10 0.08
44 22 0.17
45 44 0.34
ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39
Consensus pattern (44 bp):
GGCTTTGACCCTAGAGACTTTCTTACCTTCTTAGGCTGCATGTT
Found at i:155459 original size:128 final size:125
Alignment explanation
Indices: 155174--155459 Score: 281
Period size: 128 Copynumber: 2.2 Consensus size: 125
155164 AGACGTTTGC
* * **
155174 CTGTCGGCTTTGACCCTAGAGACCATCCTTACCTTCTTAGTTTACGTGTTGGCTTTGACCCTAGA
1 CTGTCGGCTTTGACCCTAGACA-C-TTCTTACCTTCTTAGGCTACGTGTTGGCTTTGACCCTAGA
* * * **
155239 GACATCCTGACCTTTAGTTGCCTATATGCTTTGACCCTTGAGACTTTCTTACCTTTAGTCTG
64 GACATCCTGACCTTAAGTTGCCTATATGCTTTGACCCTTGAGACTTGCTTACATCAAGTCTG
* ** * *
155301 CATGTCGGCTTTGACCTTGGAGACTTTTCTTACCTTCTTAGGCTGCTTGTTGGCTTTGACCCTAG
1 C-TGTCGGCTTTGACCCT--AGACACTTCTTACCTTCTTAGGCTACGTGTTGGCTTTGACCCTAG
* * * *
155366 AGACTTTCTTACCTTCAAGTTTGTC-AGTCA-GCTTTGA-CCTTGAGGACTTGCTTACATCAAGT
63 AGACATCCTGACCTT-AAG-TTGCCTA-T-ATGCTTTGACCCTTGA-GACTTGCTTACATCAAGT
155428 CTG
123 CTG
*
155431 TCTGTCGGCTTGGACCCTAGACACTTCTT
1 -CTGTCGGCTTTGACCCTAGACACTTCTT
155460 TACTTTTAGT
Statistics
Matches: 128, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
127 1 0.01
128 70 0.55
129 9 0.07
130 46 0.36
131 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.38
Consensus pattern (125 bp):
CTGTCGGCTTTGACCCTAGACACTTCTTACCTTCTTAGGCTACGTGTTGGCTTTGACCCTAGAGA
CATCCTGACCTTAAGTTGCCTATATGCTTTGACCCTTGAGACTTGCTTACATCAAGTCTG
Found at i:156088 original size:83 final size:83
Alignment explanation
Indices: 155984--156201 Score: 235
Period size: 83 Copynumber: 2.6 Consensus size: 83
155974 TCGATCTACT
* * *
155984 TATCGGCTTTGA-CTTAAGAGACTTCCTCACCTTTAGTATGCCTGTGGGCTTTGACC-CTGAAAA
1 TATCGGCTTTGACCTT-GGAGACTTCCTAACCTTTAGTATGCCTGTCGGCTTTGACCACTG-AAA
*
156047 CTTTCTGACTTTTAGTTTGCC
64 CTTTCT-ACTTTTAGTCTGCC
* * * * * ** * **
156068 TAT-TGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTACCTGTTAGCTTTGACCATTGTGACT
1 TATCGGCTTTGACCTTGGAGACTTCCTAACCTTTAGTATGCCTGTCGGCTTTGACCACTGAAACT
*
156132 TTCTACTTTTAGTCTGCT
66 TTCTACTTTTAGTCTGCC
* *
156150 TATCGGCTTTGACCTTGGAGACTTCCTAACCTTTAGTTTGCTTGTCGGCTTT
1 TATCGGCTTTGACCTTGGAGACTTCCTAACCTTTAGTATGCCTGTCGGCTTT
156202 AACCTTGTGA
Statistics
Matches: 110, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
82 15 0.14
83 87 0.79
84 8 0.07
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (83 bp):
TATCGGCTTTGACCTTGGAGACTTCCTAACCTTTAGTATGCCTGTCGGCTTTGACCACTGAAACT
TTCTACTTTTAGTCTGCC
Found at i:156473 original size:86 final size:86
Alignment explanation
Indices: 156376--156594 Score: 215
Period size: 86 Copynumber: 2.5 Consensus size: 86
156366 TTGACCCTCA
* * * * * * *
156376 AGACTTTTTTACCCTCAAGTCTGCCTGTCGATTTTGACCCTAGAGACATCTTTATCCTCTAGTCC
1 AGACTTCTTTACCCTTAAGTCTGCCTATCGACTTTGACCCTAGAGACATCCTTACCCTCAAGTCC
** *
156441 GTTTGTCAGCTTTGACCTTGG
66 GCCTGTCAGCTTTAACCTTGG
* * * ** * * *
156462 AGACTTCTTTACCTTTAAGTTTGCCTATTGACTTTGACTTTGGAGACTTCCTTACCCTCAAGTCT
1 AGACTTCTTTACCCTTAAGTCTGCCTATCGACTTTGACCCTAGAGACATCCTTACCCTCAAGTCC
**
156527 GCCTGTTGGCTTTAACCTTGG
66 GCCTGTCAGCTTTAACCTTGG
* * *
156548 AGACTTCTTTACCCTTAAGTCTGCC-ATTTGGCTTTGACCCTTGAGAC
1 AGACTTCTTTACCCTTAAGTCTGCCTA-TCGACTTTGACCCTAGAGAC
156595 TTCCCCACCT
Statistics
Matches: 106, Mismatches: 26, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
85 1 0.01
86 105 0.99
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (86 bp):
AGACTTCTTTACCCTTAAGTCTGCCTATCGACTTTGACCCTAGAGACATCCTTACCCTCAAGTCC
GCCTGTCAGCTTTAACCTTGG
Found at i:157119 original size:129 final size:131
Alignment explanation
Indices: 156979--157274 Score: 286
Period size: 129 Copynumber: 2.3 Consensus size: 131
156969 GACATCTTTA
* * *
156979 CCTCATGTCTACCTATCGACTTTAACCCTAGAGACTTTCCTAACCTTCTTAGTTTACTTGTCGGC
1 CCTCAAGTCTACCTATCGACTTTAACCCTAGAGACTTTCCTAACC-T-TTAGTCTACTTGTCAGC
* * *
157044 TTTGACCTTGTAGA-TTTCC-TAACTT-TTAGTTTGCCTGTTTG-CTTTAACCC-ATGAGAATTC
64 TTTAACCTTGGAGACTTTCCTTAACTTCTTAGTCTGCCTG-TTGCCTTTAACCCTA-GAGAATTC
157104 CTTA-
127 CTTAC
** * * * * * *
157108 CCTTTAGTCTACCTATATG-CTTTGACCCTGGAGA-TTTTCTTACCTTTAGTCTGCTTGTCAGCT
1 CCTCAAGTCTACCTAT-CGACTTTAACCCTAGAGACTTTCCTAACCTTTAGTCTACTTGTCAGCT
* * * * **
157171 TTAACCTTGGAGACTTTCCTTACCTTCTTAGTCTGCTTGTTGCCTTTGACCCTAGAGACTTTTTT
65 TTAACCTTGGAGACTTTCCTTAACTTCTTAGTCTGCCTGTTGCCTTTAACCCTAGAGAATTCCTT
157236 AC
130 AC
*
157238 CCTCAAGTCTGCCTATC-AGCTTTAACCCTAGAGACTT
1 CCTCAAGTCTACCTATCGA-CTTTAACCCTAGAGACTT
157275 GTTTACGTCA
Statistics
Matches: 131, Mismatches: 26, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
126 26 0.20
127 6 0.05
128 16 0.12
129 53 0.40
130 28 0.21
131 2 0.02
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (131 bp):
CCTCAAGTCTACCTATCGACTTTAACCCTAGAGACTTTCCTAACCTTTAGTCTACTTGTCAGCTT
TAACCTTGGAGACTTTCCTTAACTTCTTAGTCTGCCTGTTGCCTTTAACCCTAGAGAATTCCTTA
C
Found at i:158108 original size:84 final size:83
Alignment explanation
Indices: 158020--158245 Score: 213
Period size: 83 Copynumber: 2.7 Consensus size: 83
158010 GCCTATTGAA
* * * * * *
158020 TTTGACCCTGGAGATTTTCTTACCTTTTGTCTGCTTGTGGACTTAGACCTTGGAGACTTTCTAAC
1 TTTGACCATGGAGATTTTCTTACCTTTAGTCTCCTTATCGACTTAGACCTTAGAGACTTTCT-AC
*
158085 TTTTAGTCTACCCGTTAGC
65 TTTTAGTCTACCCGTCAGC
* * * **
158104 TTTGACCATGGAGA-CTTCTTTAGCTTTAGTCTCCTTATCGACTTTGACCTTAGAGTTTTTCTAC
1 TTTGACCATGGAGATTTTC-TTACCTTTAGTCTCCTTATCGACTTAGACCTTAGAGACTTTCTAC
* * *
158168 TTTTAGTCTGCCGGTCGGC
65 TTTTAGTCTACCCGTCAGC
* * * * * * *
158187 TTTGGCCTTGGAGATTTTCTTACATTTAGTTTCCCTATCGGCTTTA-ACCTTAAAGACTT
1 TTTGACCATGGAGATTTTCTTACCTTTAGTCTCCTTATCGAC-TTAGACCTTAGAGACTT
158246 CGTCTTCCAT
Statistics
Matches: 112, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
83 60 0.54
84 52 0.46
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.42
Consensus pattern (83 bp):
TTTGACCATGGAGATTTTCTTACCTTTAGTCTCCTTATCGACTTAGACCTTAGAGACTTTCTACT
TTTAGTCTACCCGTCAGC
Found at i:158462 original size:44 final size:42
Alignment explanation
Indices: 158412--158533 Score: 131
Period size: 41 Copynumber: 2.9 Consensus size: 42
158402 CCCAAGAGAC
**
158412 TTTCCTAACCTTCTTAGTCTATTTGTCAGCTTTGACCTTATAGA
1 TTTCCTAA-CTT-TTAGTCTACCTGTCAGCTTTGACCTTATAGA
* *
158456 TTTCCTAACTTTTAGTCTACCTGTCGGCTTTGACCTTAGAGA
1 TTTCCTAACTTTTAGTCTACCTGTCAGCTTTGACCTTATAGA
* * * *
158498 CTTT--TGACTTATAGTCTACTTGTCGGCTTTGACCTT
1 -TTTCCTAACTTTTAGTCTACCTGTCAGCTTTGACCTT
158534 GGAGACTTCC
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 29 0.41
42 27 0.39
43 6 0.09
44 8 0.11
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.44
Consensus pattern (42 bp):
TTTCCTAACTTTTAGTCTACCTGTCAGCTTTGACCTTATAGA
Found at i:158851 original size:85 final size:83
Alignment explanation
Indices: 158691--159075 Score: 267
Period size: 85 Copynumber: 4.6 Consensus size: 83
158681 CTACCTATCG
* * * * *
158691 GCTTTGACCTTGGAAACTTCCTTACCTCAAGTCTGCTTCTCGGCTTTGACCCTAGAGACTTCCTT
1 GCTTTGACCTTGGAGACTTCCTTACCTCAAGTCTGCCTATCGGCTTTGACCCTAAAGACTTCCGT
* *
158756 ACATCAAGTTTGCTTTTTT
66 ACATCAAGTTTGC-CTTTC
* * * * *
158775 GCTTTAACCTTGGAGACTTCCTTACGGTCAAGTCTGCCTATTGGCTTTGACTCTAAAGACTTTCG
1 GCTTTGACCTTGGAGACTTCCTTAC-CTCAAGTCTGCCTATCGGCTTTGACCCTAAAGACTTCCG
*
158840 TACCAT-TAGTTTGCCTTTC
65 TA-CATCAAGTTTGCCTTTC
* ** * * * * * * * *
158859 GACTTTGACCCTGGAGACTTCCTTACCTTTAGTGTGGCTGTCAGTTTTGACCATAGAGACTTCCT
1 G-CTTTGACCTTGGAGACTTCCTTACCTCAAGTCTGCCTATCGGCTTTGACCCTAAAGACTTCCG
* * *
158924 TACCTCAAGTCTGCCTATTG
65 TACATCAAGTTTGCCT-TTC
* * * * * **
158944 GCTTTTAACTTGGAGACTTTCTTACCCTCAAGTCTACCTATCGGCTTTGATCCTGGAGACTTCC-
1 GCTTTGACCTTGGAGACTTCCTTA-CCTCAAGTCTGCCTATCGGCTTTGACCCTAAAGACTTCCG
** * * *
159008 TA-ATGTTTA-TTCTACTTGTTA
65 TACA--TCAAGTT-TGCCT-TTC
* *
159029 GCTTTGACCTTGGAGACTTCCTTACCGTTAA-TCTGCCTATTGGCTTT
1 GCTTTGACCTTGGAGACTTCCTTACC-TCAAGTCTGCCTATCGGCTTT
159076 AACCTTGGGG
Statistics
Matches: 229, Mismatches: 62, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
83 2 0.01
84 100 0.44
85 124 0.54
86 3 0.01
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.39
Consensus pattern (83 bp):
GCTTTGACCTTGGAGACTTCCTTACCTCAAGTCTGCCTATCGGCTTTGACCCTAAAGACTTCCGT
ACATCAAGTTTGCCTTTC
Found at i:158876 original size:127 final size:126
Alignment explanation
Indices: 158523--159078 Score: 367
Period size: 127 Copynumber: 4.4 Consensus size: 126
158513 CTACTTGTCG
* * * * * *
158523 GCTTTGACCTTGGAGACTTCCTCAC-ACTTAGTCTGCATGTTGGCTTTGACCTTGAAA-AC-TTC
1 GCTTTGACCTTGGAGACTTCCTTACGTC-AAGTCTGCCTATTGGCTTT-AACTT-AAAGACTTTC
* * * * * * * ** * ** *
158585 CTCACCATTAA-TCTGCCTGTCGGCTTTGATCGTGGAGACTTCCCCACCTTTAGCCTGCTTGTCA
63 GT-ACCATCAAGTCTACCTATCGACTTTGACCCTGGAGACTTCCTTACATTTAGTTTGCTTGTTA
* * * * * * * * * * *
158649 ACTTTAACTTTGGAGACTTCCTCACCTCAAGTCTACCTATCGGCTTTGACCTTGGAA-ACTTCCT
1 GCTTTGACCTTGGAGACTTCCTTACGTCAAGTCTGCCTATTGGCTTT-AACTT-AAAGACTTTCG
* * * * * ** * *
158713 TACC-TCAAGTCTGCTTCTCGGCTTTGACCCTAGAGACTTCCTTACATCAAGTTTGCTTTTTT
64 TACCATCAAGTCTACCTATCGACTTTGACCCTGGAGACTTCCTTACATTTAGTTTGCTTGTTA
* *
158775 GCTTTAACCTTGGAGACTTCCTTACGGTCAAGTCTGCCTATTGGCTTTGACTCTAAAGACTTTCG
1 GCTTTGACCTTGGAGACTTCCTTAC-GTCAAGTCTGCCTATTGGCTTTAACT-TAAAGACTTTCG
* * * * * * *
158840 TACCAT-TAGTTTGCCTTTCGACTTTGACCCTGGAGACTTCCTTACCTTTAGTGTGGC-TGTCA
64 TACCATCAAGTCTACCTATCGACTTTGACCCTGGAGACTTCCTTACATTTAGT-TTGCTTGTTA
* * * * ** *
158902 GTTTTGACCATAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTTAACTTGGAGACTTTCTT
1 GCTTTGACCTTGGAGACTTCCTTACGTCAAGTCTGCCTATTGGC-TTTAACTTAAAGACTTTCGT
* * * * ** *
158967 ACCCTCAAGTCTACCTATCGGCTTTGATCCTGGAGACTTCCTAATGTTTA-TTCTACTTGTTA
65 ACCATCAAGTCTACCTATCGACTTTGACCCTGGAGACTTCCTTACATTTAGTT-TGCTTGTTA
*
159029 GCTTTGACCTTGGAGACTTCCTTACCGTTAA-TCTGCCTATTGGCTTTAAC
1 GCTTTGACCTTGGAGACTTCCTTA-CGTCAAGTCTGCCTATTGGCTTTAAC
159079 CTTGGGGACT
Statistics
Matches: 338, Mismatches: 79, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
125 4 0.01
126 154 0.46
127 172 0.51
128 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (126 bp):
GCTTTGACCTTGGAGACTTCCTTACGTCAAGTCTGCCTATTGGCTTTAACTTAAAGACTTTCGTA
CCATCAAGTCTACCTATCGACTTTGACCCTGGAGACTTCCTTACATTTAGTTTGCTTGTTA
Found at i:159718 original size:83 final size:84
Alignment explanation
Indices: 159548--159707 Score: 223
Period size: 83 Copynumber: 1.9 Consensus size: 84
159538 GACTTAGGAA
* * * *
159548 ACTTTCTGACTTTTAGTTTGCTTGTTGGTTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCT
1 ACTTTCTGACATTTAATCTGCTTGTCGGTTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCT
* *
159613 ATTAGCTTTGACCCTAGAG
66 ATCAGCTTTAACCCTAGAG
* *
159632 ACTTTCT-ACATTTAATCTGCTTGTCGGTTTTGACCTTGGAGACTTTCTTACCTTTAGTCTGCCT
1 ACTTTCTGACATTTAATCTGCTTGTCGGTTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCT
* *
159696 GTCATCTTTAAC
66 ATCAGCTTTAAC
159708 TGTGGAGACT
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
83 59 0.89
84 7 0.11
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.44
Consensus pattern (84 bp):
ACTTTCTGACATTTAATCTGCTTGTCGGTTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACCT
ATCAGCTTTAACCCTAGAG
Done.