Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2436
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 265143
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
File 2 of 2
Found at i:160361 original size:129 final size:128
Alignment explanation
Indices: 160124--160365 Score: 286
Period size: 129 Copynumber: 1.9 Consensus size: 128
160114 TACCTATAGG
* * ** *
160124 CTTTGACCTTGGAGACTTCCTCACCATAAGTCTGCCCGTCATCTTTGACCATAGAGAGTTTCTTA
1 CTTTGACCTTGGAGACTTCCTCACCATAACTCTGCCCGTCAGCTTTGACCATAGAGACATCCTTA
* * *
160189 CCCTCAAGTTTACCTATAAATTTTAACCCTGGACACTTCTTTACCCTCTAATCTATTTCTTAA
66 CCCTCAAGTCTACCTATAAACTTTAACCCTGGACACTTATTTACCCTCTAATCTATTTCTTAA
* * * * * * *
160252 CTTTGTCCTTGGAGACTTCCTTACCTTCAACTCTTCCTGTTAGCTTTGACCCTAGAGACATCCTT
1 CTTTGACCTTGGAGACTTCCTCACCAT-AACTCTGCCCGTCAGCTTTGACCATAGAGACATCCTT
* * * * * *
160317 ACCCTCAAGTCTGCTTGTCAACTTTAACCTTGGAGACTTATTTACCCTC
65 ACCCTCAAGTCTACCTATAAACTTTAACCCTGGACACTTATTTACCCTC
160366 AAGTCTGCTT
Statistics
Matches: 92, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
128 24 0.26
129 68 0.74
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (128 bp):
CTTTGACCTTGGAGACTTCCTCACCATAACTCTGCCCGTCAGCTTTGACCATAGAGACATCCTTA
CCCTCAAGTCTACCTATAAACTTTAACCCTGGACACTTATTTACCCTCTAATCTATTTCTTAA
Found at i:160774 original size:126 final size:125
Alignment explanation
Indices: 155171--183738 Score: 5757
Period size: 126 Copynumber: 226.1 Consensus size: 125
155161 TAGAGACGTT
* * * * * * * *
155171 TGCCTGTCGGCTTTGACCCTAGAGACCATCCTTACCTTCTTAGTTTACGTGTTGGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGA-CTTCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCTT
* * * * * * * *
155236 AGAGACATCCTGACCTTTAGT-TGCCTAT-ATGCTTTGACCCTTGAGACTTTCTTACCTTTAGTC
63 GGAGACTTCCTTACCTTTAGTCTGCCTGTCA-GCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * *
155299 TGCATGTCGGCTTTGACCTTGGAGACTTTTCTTACCTTCTTAGGCTGCTTGTTGGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCTT
* * * * * * * * * * *
155364 AGAGACTTTCTTACCTTCAAGTTTGTCAGTCAGCTTTGACCTTGAGGACTTGCTTACATCAAGTC
63 GGAGACTTCCTTACCTT-TAGTCTGCCTGTCAGCTTTAACCTAGA-GACTTCCTTACCTTAAGTC
* * * * * * * * *
155429 TGTCTGTCGGCTTGGACCCTAGACACTTCTTTACTTTTAGTCTACCTGCCGGCTTTGACCTT---
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * *** ** * *
155491 TACTTCTTTACCCTTTAGTCTATTTGTC-GACTTTGGCCCTAAAGACTTCCCTACCTTAAAGTC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTT-AAGTC
* * * ** * * * *
155554 TGCCTATCGGTTTTCACCCTAGAGACTTCCTTACACTCGAGTCTGCCCGTCAGCTTTAACCTTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCAC-CTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * ** * * ** ** * * * *
155619 AGACATCTTTACCCTCAAGTCTACCTTTTGGCTTTGGCCCTAGAAACTTCCTCACCTTTAGAC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * ** * *
155682 TGCCTGTCGG-TTTGA-CCTTGAAGACTTTCTAAATTTTAGTCTACCTGAT-GGCTTTTACCTTG
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCTG-TCGGCTTTGACCTTG
** * * * * * * * *
155744 GAGACTTTTTTACTTTTAGTCTACCTGTCGGCTTTGACCTTTGAGATTTCTTTACCCTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
** * * * * * * * * * * *
155808 TGTTTCTCGGGCTTTGGCCCTAAAGACTTTCTTACCTTAAAATTTTCCTATCGGCTTTCACCTTG
1 TGCCTATC-GGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTG
* * * * * *
155873 GAGACTTCCTTACCCTTGAGTCTGCCTGTCAGTTTTAACCTTGGAGACCTCTTTACCCTCAAGTC
64 GAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * * *
155938 TACCTTTTGGCTTTGACCTTAAAGACTTCCTCACC-TTCGATCTACTTATCGGCTTTGA-CTTAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAG-TCTGCCTGTCGGCTTTGACCTT-G
* * ** * * * * * * *
156001 GAGACTTCCTCACCTTTAGTATGCCTGTGGGCTTTGACCCT-GAAAACTTTCTGACTTTTAGTT
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAG-AGACTTCCTTACCTTAAGTC
* * * * * * **
156064 TGCCTAT-TGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTACCTGTTAGCTTTGACCATT-G
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACC-TTGG
* * * * * * * * * * *
156127 TGACTTTC-TACTTTTAGTCTGCTTATCGGCTTTGACCTTGGAGACTTCCTAACCTTTAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * ** *
156188 TGCTTGTCGGCTTT-AACCTTGTGACTTCCTCATCC-TTAGTCTACCTATCACCTTTGACCTTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * ** ** * ** *
156251 AGACTTCCTCACCATTAGTCTGTTTGTC-GACTTCGACCGT-GAAAACTTCCCCACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAG-AGACTTCCTTACCTTAAGTC
* ** * * * *
156313 TG-CTAGTCAGG-TTTAACTTTAGAGACTTCCAT-ACC-TCAGTCTGTCTATCGGCTTTGACCCT
1 TGCCTA-TC-GGCTTTGACCCTAGAGACTTCC-TCACCTTTAGTCTGCCTGTCGGCTTTGACCTT
** ** ** * * * *
156374 CAAGACTTTTTTACCCTCAAGTCTGCCTGTC-GATTTTGACCCTAGAGACATCTTTATCCTCT-A
63 GGAGACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTA-CCT-TAA
156437 GTC
123 GTC
* ** * * * * * * * * * * *
156440 CGTTTGTCAGCTTTGACCTTGGAGACTTCTTTACCTTTAAGTTTGCCTATTGACTTTGACTTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTT-AGTCTGCCTGTCGGCTTTGACCTTGG
** ** * *
156505 AGACTTCCTTACCCTCAAGTCTGCCTGTTGGCTTTAACCTTGGAGACTTCTTTACCCTTAAGTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * *
156569 TGCC-ATTTGGCTTTGACCCTTGAGACTTCCCCACCTTTAATTTGCCTATCGACTTTGACCTTGT
1 TGCCTA-TCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * * *
156633 AGACTACCTCACTTTTAGTCTGCCTATCAGCTTTGACCTTAGAGACTTTCTAACTTTTAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * *
156695 TGCTTATTGGCTTTGACCTTGGAGACTAT-TTTAGCTTTACTCTGCCTGTCGACTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACT-TCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * ** * * * *
156759 AAACTTTC-TACTTTTAGTCTGCCTGTTGGCTTTAACCTTGGAGACTTCCATACTTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * ** * * * * * * *
156820 TGCATGTCAAC-TTAAACCTTGAAGAC-TCCATCATCTCTT-GTCTACCTATCAGCTTTGATCC-
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCC-TCACCT-TTAGTCTGCCTGTCGGCTTTGA-CCT
* * * * ** * * * * * **
156881 TAGACACTTCCTTACCATTAGTCTGCTTGTTGGCTCTGACTGTGGAGACTT-CTCGACCTTTGGT
62 TGGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCT-TACCTTAAGT
156945 C
125 C
* * * * ** * * * * * * * * * * *
156946 TGCTTGTCAGCTTTAACTTTGGAGACATCTTTACC-TCATGTCTACCTATCGACTTTAACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTA-GTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * * * * *
157010 AGACTTTCCTAACCTTCTTAGTTTACTTGTCGGCTTTGACCTTGTAGATTTCCTAACTTTTAGTT
65 AGAC-TTCCTTACC-T-TTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTTACCTTAAGTC
* ** * * * * * ** *
157075 TGCCTGTTTGCTTTAACCC-ATGAGAATTCCTTACCTTTAGTCTACCTATATGCTTTGACCCTGG
1 TGCCTATCGGCTTTGACCCTA-GAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * *
157139 AGATTTTCTTACCTTTAGTCTGCTTGTCAGCTTTAACCTTGGAGACTTTCCTTACCTTCTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGAC-TTCCTTACC-T-TAAGTC
* * * * ** * ** * * * * *
157204 TGCTTGTTGCCTTTGACCCTAGAGACTTTTTTACCCTCAAGTCTGCCTATCAGCTTTAACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
** * ** * * * * * * *
157269 AGACTTGTTTACGTCAAATCTGTCTAG-CGGCCTTAACCCTGGAGACTTCTTTACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCT-GTCAGCTTTAA-CCTAGAGACTTCCTTACCTTAAGTC
* * * * * * *** * **
157331 TACCTATCAGCTTTGACCCT-GAAAACTTCTTTATCTTTTAGTCTATTTATCGGCTTTGACC-CC
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * * * * * *
157394 AAAACTTCCTTACCTTAAAGTTTGCCTATCGGGTTTGACCTTGGAGACTTCCTTACCTTCAAGTC
64 GAGACTTCCTTACCTT-TAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTT-AAGTC
* * * * * * * ** * * ** * *
157459 TGCCTGTCAGCTTTAACCTTGGAGACTTCTTTACCCTCAAGTTTGCCTTTTAGCTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * ** * * *
157524 AGACTTTCTCACCTTTAGTCTGCCTGTCGGCTTTGGCCCTAGAGACTT-CTTCACTTTTAGTA
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT-ACCTTAAGTC
** * * * * * * * * * *
157586 TATCTCTCGGCTTTAACCTTAGAGCCTTCCTCATCC-TTAGTCTACCTATTGCCTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * ** *
157650 AGACTTCCTCACCATTAGTCTGCCTATCTGCTTTGACCGT-GAAGACTTCCCCACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAG-AGACTTCCTTACCTTAAGTC
* * * ** * * * * * ** * * * * * *
157712 TACTTGTCAACTTTAACTCTAGAGGCTTCTTTACCTCAAGTCTCCCTATCAGCTTTAACCATAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* ** * * * *
157777 GACTTTCTTACCTTTAAGTCTGCCCATCAACTTTGACCCTAGAGACCTCCTGACCTGT-AGTC
66 GACTTCCTTACCTTT-AGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCT-TAAGTC
* * ** * * * ** * *
157839 TGCCTATCTGCTTTAATTCTAGAGACTTCCTTACCTTTAGTCTACCTATCAACTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * * * *
157904 GACTTCCTTACCCTTAAGTTTGCTTATCAGTTTTAACTTTGGAGACTTCTTTACCCTCAAGTT
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTA-CCTTAAGTC
* ** * * * * ** *
157967 TGCC-ATTTGTTTTTGACCTTAGAGACTTCCTCACCTTCAGTCTGCCTATTGAATTTGACCCTGG
1 TGCCTA-TCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * * *
158031 AGATTTTCTTACCTTTTGTCTGCTTGT-GGAC-TTAGACCTTGGAGACTTTCTAACTTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTA-ACC-TAGAGACTTCCTTACCTTAAGTC
* ** ** * * * * * * * *
158093 TACCCGTTAGCTTTGACCATGGAGACTTCTTTAGCTTTAGTCT-CCTTATCGACTTTGACCTTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCC-TGTCGGCTTTGACCTTGG
** * * * * ** * * * * * *
158157 AGTTTTTC-TACTTTTAGTCTGCCGGTCGGCTTTGGCCTTGGAGATTTTCTTACATTTAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * * * * **
158218 TCCCTATCGGCTTTAACCTTAAAGACTTCGTCTTCCATT-GTCTACTTGTTGGTTTTAACCCTAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTC-ACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * * *
158282 AGACTT-CTTCACCATTAGTCTGCCTGTTGGCTTTGACCGTAGAGACTTCCCTACCTTTAGTC
65 AGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * ** * * ** * * * ***
158344 T-CCTTGTCAGCTTTAACTTTAGAGACTTTCTTACCACATA-TCTGCTTTTCGGCTTTAACCCAA
1 TGCC-TATCGGCTTTGACCCTAGAGACTTCCTCACC-TTTAGTCTGCCTGTCGGCTTTGACCTTG
* *** * * * * * *
158407 GAGACTTTCCTAACCTTCTTAGTCTATTTGTCAGCTTTGACCTTATAGATTTCCTAACTTTTAGT
64 GAGAC-TTCCTTACC-T-TTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGT
158472 C
125 C
* * * * * * *
158473 TACCTGTCGGCTTTGACCTTAGAGACTT-TTGA-CTTATAGTCTACTTGTCGGCTTTGACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGG
* * ** * * * *
158536 AGACTTCCTCACAC-TTAGTCTGCATGTTGGCTTTGACCTTGAAAACTTCCTCACCATTAA-TC
65 AGACTTCCTTAC-CTTTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTTACC-TTAAGTC
* * * * * * * ** * *
158598 TGCCTGTCGGCTTTGATCGTGGAGACTTCCCCACCTTTAGCCTGCTTGTCAACTTTAACTTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* ** * * * * * * *
158663 GACTTCCTCACCTCAAGTCTACCTATCGGCTTTGACCTTGGAAACTTCCTTACCTCAAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * ** * * * ** *
158724 TGCTTCTCGGCTTTGACCCTAGAGACTTCCTTACATCAAGTTTGCTTTTTTGCTTTAACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* ** * ** * * * * *
158789 GACTTCCTTACGGTCAAGTCTGCCTATTGGCTTTGACTCTAAAGACTTTCGTACCATT-AGTT
66 GACTTCCTTAC-CTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACC-TTAAGTC
* * * * * * * * * *
158851 TGCCTTTCGACTTTGACCCTGGAGACTTCCTTACCTTTAGTGTGGCTGTCAGTTTTGACCATAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * ** * * * *
158916 GACTTCCTTACCTCAAGTCTGCCTATTGGCTTTTAACTTGGAGACTTTCTTACCCTCAAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGC-TTTAACCTAGAGACTTCCTTA-CCTTAAGTC
* * * * ** * * * **
158978 TACCTATCGGCTTTGATCCTGGAGACTTCCTAATGTTTATTCTACTTGTTAGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** * * * *
159043 GACTTCCTTACCGTTAATCTGCCTATTGGCTTTAACCTTGGGGACTTCCTCATGCTT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * *
159104 TACCTATCGCCGTTGACCCTAGAGACATCCTCAACATTAGTCTGCCTGTCGGCTTT-AACTGTGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * *
159168 AGACTTTCC--ACCTTTAGTCTGCTTATCAGCTTTAACTCTAGAGACTTCCTTACCTCAAGTC
65 AGAC-TTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * ** * *
159229 TGCCTATCGGCTTTGAGCCTAGAGACTT--AC-CCTTAAGTCTGCTTGTCGATTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* ** * * ** * * * * * *
159291 AACTTATTTACCCTCTAATCTGTTTCTAAACTTTGACTCTCGAGACTTCCTTACCTTCAACTC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTT-AAGTC
* * * * * * ** * * * *
159354 AT-CTTGTTGGGTTTGACCCTAGAGGCTTCCTTACCCTCAAGT-TCGCCTTTCAGCTTTAACTTT
1 -TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCT-GCCTGTCGGCTTTGACCTT
** ** * ** ** * *
159417 GGAGACTTATTTACCCTCAAGTCTGCCTTTTGGCTTTGCCCCTAGAGACTT-TTTCACCTTCAGT
63 GGAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT-ACCTTAAGT
159481 C
125 C
* * * * *** * *
159482 TCCCTATCGGCTTTGACCCTAAAGACTTCCTTACCTTTAGTTTATTTGTTGGCCTTGA-CTTAGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTT-GG
* * * * * * ** * * * *
159546 AAACTTTCTGACTTTTAGTTTGCTTGTTGGTTTTGACCTTGGAGACTTCCTTACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* ** * * * * *
159608 TACCTATTAGCTTTGACCCTAGAGACTTTCT-ACATTTAATCTGCTTGTCGGTTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * *
159672 GACTTTCTTACCTTTAGTCTGCCTGTCATCTTTAACTGTGGAGACTTCCTCATCCTT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTA-CCTTAAGTC
* * ** * * * * * *
159733 TACCTATTGATTTTGATCTTAGAGACTTCCTCACCATTAGTTTGCCTATCGGCTTTGACCATGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * * *
159798 GA-TATCCACACCATTAGTTTGCTTGTCAGCTTTAACTCT-GAATACTTCCTTACCTTGAGTT
66 GACT-TCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAG-AGACTTCCTTACCTTAAGTC
* ** * * * * * * *
159859 TGCCTAACAACTTTGACCCTAGAGACTTTTCTAACCTTCTTAGTCTACATCTCAGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCTT
* * * * * * * * * *
159924 GTAGATTTCATAACTTTTAGTCTGCTTGT-AGGCTTTGACCTTTGAGAATTCCTTACCTTTAGTC
63 GGAGACTTCCTTACCTTTAGTCTGCCTGTCA-GCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * *
159988 TACCTGTCGGCTTTGGCCTTAAAGACTTTCTAACTTTTAGTTTGCCTTTTGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
160053 GACTTCTTTACCTTTAGTCTACCTGTCGGCTTTAACCTTGAAGACTTACTCAGCCAT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTTA-CCTTAAGTC
* * * * * * * ** * *
160114 TACCTATAGGCTTTGACCTTGGAGACTTCCTCACCATAAGTCTGCCCGTCATCTTTGACCATAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * ** * * * * ** * * *
160179 GAGTTTCTTACCCTCAAGTTTACCTATAAATTTTAACCCTGGACACTTCTTTACCCTCTAA-TC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTA-CCT-TAAGTC
*** * *** * * * * * * * ** * *
160242 TATTTCTTAACTTTGTCCTTGGAGACTTCCTTACCTTCAACTCTTCCTGTTAGCTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * * * ** *
160307 AGACATCCTTACCCTCAAGTCTGCTTGTCAACTTTAACCTTGGAGACTTATTTACCCTCAAGTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * * * *
160371 TGCTTTTTGGCTTTGACTCTAAAGA-TTGCTTCACCTTCAGTCTGCTTATCGGCTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTT-CCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * *
160435 AGACTTCCTCACCTTTGGTCTGCTTGTCGGCTTTTACCTTGTAGACTTCCTTACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTTACCTTAAGTC
* * * * * * * * * *
160497 TGTCTATCGGATTTGACCCTAGATACTT-TTTA-CTTATAGTTTGCTTATCGGATTTGACCTTTG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGG
* * ** * *
160560 AGACTTCCTTACCTTTAGTTTGCCTGTCTGCTTTAATTTTAGAGACTTTCTCATCCTT-AGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * *
160622 TACTTGTCAGCTTCGACCTTAGAGACTTCCTCACCATTAGTCTGCCTGTCGGCTTTGACCGTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * *
160687 GACTTCCTTACCTTTAGTCTGTTTGTTAGCTTTAACTCTAGAAACTTCCTTACCTTAAGTT
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * ** *
160748 TGCCTATCAGCTTTGACCCTGGAGACTTTCTTAACCTTCCTAATTTACCAATCGGCTTTGACCGT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACCTT--TAGTCTGCCTGTCGGCTTTGACCTT
** * * * * * * * *
160813 ATAGA-TTTCTTAGCTTTTAGTCTGTCTGTCGGCTTTGACCCTTA-AGAATTCCTTATCTTTAGT
63 GGAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACC-TAGAGACTTCCTTACCTTAAGT
160876 C
125 C
* * * * * * * * * *
160877 TGCTTGTCGGTTTTGA-CCTTGAAGACTTTCTAACTTTTAGTCTGCCTGTCAGTTTTGACCTTAG
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
** * * * *
160941 AGACTTCCACACCTTAAGTCTGCATGTCAGCTTTAACTCTAAAGACTTCCTTACCTCAAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * *
161003 TGCCTATCGACTTTGACCTTGGAGACTTCCTTACC-TCAGGTCTG-CTGGTCGGCTTTGACCCTA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTA-GTCTGCCT-GTCGGCTTTGA-CCTT
* * ** * * * *
161066 GG-GACTTCTTTACATCAAGTCCGCCTGTCAGCTTTAACCTTAGAGACTTCCTTATGCTCAAGTT
63 GGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * ** *
161130 TGCTTATCGACTTTGACCCTA-AGGACTTCCACACCGTTAGTCCGCCTGGAGGCTTTGACCCTGG
1 TGCCTATCGGCTTTGACCCTAGA-GACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * *
161194 AAACTTCTTTGCCTTTAGTGTGGCTGTCAGCTTTGACCCAAGAGACTTCCTTACCTCAAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * ** * * * * ** *
161256 TGCCTGTTGGCTATGAGCATAGAGGCTTTGTTACCCTCTAGTTTAG-CTATCGGCTTTGGTCTTA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCT-GCCTGTCGGCTTTGACCTTG
* * * * * * * * * * *
161320 GAGACTTCCTGACCTTTATTATACCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTT
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * **
161383 TGCCTGTTGGCTTTGACCTTAGAG------T---C--T--T-TG--TGTCGGCTTTGACTC-TAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGAC-CTTGG
* * * * ** * *
161431 AGACTTTGCTTACCTTCTCAGTTTGCCTGTCGGCTTTGACCTTAGAGACTTTTTTATCTCAAGTC
65 AGAC-TTCCTTACCTT-T-AGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
** * * * ** * * * * * *
161496 AACTTGTTGGCTTTGACATTGGAGACTTGCTTTACCTTTAGT-TAGCCCGAT-GGCTTTAACCCA
1 TGCCTATCGGCTTTGACCCTAGAGACTT-CCTCACCTTTAGTCT-GCCTG-TCGGCTTTGA-CCT
* * * * * * *
161559 T-GAGACTTCCTGACCTTTAGTCTGTCTATCTA-CTTTGACCTTAAAGACTTCTTTACCTTTAGT
62 TGGAGACTTCCTTACCTTTAGTCTGCCTGTC-AGCTTTAACC-TAGAGACTTCCTTACCTTAAGT
161622 C
125 C
* * * * * * * * * * * * ** *
161623 TACTTGTCAGCTTTAACCTTGGAGACTTTCCTTAGCTTTTTGTTCTACATGTTAGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCA-CCTTTAG-TCTGCCTGTCGGCTTTGACCTT
*** * * * * * ** *
161688 GGAGACCTT-CTTACACCCAAGTCTGCTTGTTAGCTTTGACCTTGGAGACTTGCTTATGTCAAGT
63 GGAGA-CTTCCTTAC-CTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGT
161752 C
125 C
** * * * * * * * ** * *
161753 TTTCTATCAGCTATGACCTTGGAGACTTCCTCACCATTAGTCTACTTGTCAACTTTAACCGTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * *
161818 GACTTCCTCACCTTTAGTTTGCTTGTCAGCTTTAACTTTAGGGACTTCCTTACCTCATGTT
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * *
161879 TGACTATCTGCTTTGACCTTACATACTTTCCTAACCTTTTTAGTCTACTTGTCGGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACC--TTTAGTCTGCCTGTCGGCTTTGACCTT
** * ** * * ** * * *
161944 ATAGA-TTTCTTAAGTTTTAGTCTACTTGTTGGCTTTAACCTTTGAGAATTCCTTACCTTTAGTC
63 GGAGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * *
162008 TACCTATCTGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCGTCATTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** * * ** *
162073 GACTTTCCTCACTTTCTAAGTCTGCTTGTTGGCTTTGACCCTAAAGACTTTTTTACCATCAAGTC
66 GAC-TTCCTTACCTT-T-AGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACC-TTAAGTC
* * * * * * * ** * * ** * * *
162138 TACCTATCGACTTTAACCCTAGAGACGTGCTTACGTCAAGTATGTCTGTCGAATTTAACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * *
162203 GACTTTTTTACCTTTAGTTTGCCTGCCGGCTTTGACCCTAGAGACTTCGTTACCATTTAA-TC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACC--TTAAGTC
*** * * * * * * * * * *
162265 TATTTGTCGGTTTTGACCCCAAAGACTTCCTTACCTTAAAGTCTGCCTATCGGATTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * * * *
162330 AGACTTCTTTACTCTCGAGTCTGCCTGTCGGCTTTAACCTCGGAGACTTCTTTACCCTCAAGTC
65 AGACTTCCTTAC-CTTTAGTCTGCCTGTCAGCTTTAACCT-AGAGACTTCCTTA-CCTTAAGTC
* * * ** * ** *
162394 CGCCTTTTGGCTTTGACATTAGAGACTTCCTCACCTTTAGTTTGCCAATCGGCTTTGACCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
162459 TACTT-TTTCACCTTTAGTCTGCCTGTC-GACTTTGACCTAGGAGACTTTCTAACTTTTAGTC
66 GACTTCCTT-ACCTTTAGTCTGCCTGTCAG-CTTTAACCTA-GAGACTTCCTTACCTTAAGTC
* * * * * * * * * * * * * *
162520 TTCTTGTTGGCTTTGACCTTGGAGACTT-TTTAACTTTAGTTTGCTTATCGCCTTTGA-CTCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * * * * * * * * *
162583 AGACTT-TTTACTTTTAGTTTACTTGTCAGCTTTGACATTGGAGACTTTCTTACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * * *
162644 TACCTGTCGGCTTTAACCTTGGAGCCTTCATAATCC-TTAGTCTACCTATCGCCTTTGACGC-TA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGAC-CTTG
* * * * * ** * *
162707 GAGACTTCCTCACCATTAGTCTGCCTAT-TGATTTTAACCGT-GAAGACTTCCCCACCTTTATTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAG-AGACTTCCTTACCTTAAGTC
* ** * * * ** ** * * * * *
162770 TGCTTATCAACTTTAACTCTAGAGACTTCTTTGCCTCAAGTCTCCCTATCAGCTTTGACCATAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
162835 GACTTTCTTACCCTTAAGTCTGCCCGTC-GACTTTGACTTTAGAGACCTCCTGACCTGT-AGTC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTTAAC-CTAGAGACTTCCTTACCT-TAAGTC
* * * * ** *
162897 TGCCTATCTGCTTTAACCCTAGAGACTTCCTAACCTTTAGTTTGCCAATCGGCTTTGAGCC-TAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGA-CCTTGG
** * * * *
162961 AGACTTCCTTACCCTCAAGTTTGTCC-GTCGGCTTTAACCATAGAGACTTCTTTACCCTCAAGTC
65 AGACTTCCTTA-CCTTTAGTCTG-CCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * *
163025 TGCCTTTTGGCTTTGACACTAGAGACTTCCTCACCTTCAGTCTGCCTATTGGCTTTGGCCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * ** * *
163090 GACTTCCTCACCATTAGTCTGCCTATC-GATTTTGACCTTAGAGACTTTTTTACTTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* ** * * * * * * * * *
163151 TACCTATTAGCTTTGACCTTGGAGACTTCTTTAGCTTTAGTCTCCCTGTCGGCTTTAACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
163216 GACTTTC-TACTTTTAGTCT-ACTAGTC-GACTTTGACCTTGGAGACATT-CTTACCTTTAGTT
66 GACTTCCTTACCTTTAGTCTGCCT-GTCAG-CTTTAACC-TAGAGAC-TTCCTTACCTTAAGTC
** * * * * * * ** * ** * * * *
163276 TGTTTGTCGACTTTAACCTTGGAGACTTCTTTTTCC-TTAGTCTACCAATTGGCTTTAACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTC-CTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * * * *
163340 AGACTT-TTTCACCATTAGTCTTCCTGTCGGTTTTGACCATGGAGACTTCCCTATCTTTAGTG
65 AGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * ** * ** * * ** * * * * **
163402 TGCTTGTTAGCTTTAACTTTAAAGGCTTCCTTGCCTCATA-TCTGCCTTTCGACTTTGACCCTAC
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCT-TTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * * *
163466 AGATTTCCTAACTTTTAGTCTACCGGTCGGCTTTGACCCTTGAGAATTCCTTACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * *
163528 TGCATGTCAGCTTTGACCTTAGAGATTTTCTAACTTTTAGTCTGCCTGTTGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * *
163593 GACTTCCTTACCTTTAGTCTACCTGTCAACTTTAACCTTAGAGACTT-CTTCATCCTT-ACTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTT-A-CCTTAAGTC
** ** * * * * ** * *
163654 TGCCCGTCAACTTTGACCTTGGAGACGTCCTCACCATTAGTCTGCCCATCGGCTTTGACATTCGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * *
163719 GACTTGCC-CACCTTTAGTCTACCTGTCGGCTTTAATCGTGGAGGCTTCCTCACCTTTAGTC
66 GACTT-CCTTACCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTACCTTAAGTC
* * * * ** * ** * * *
163780 TGCTTCTCAGCTTTAACTTTAGAGACTTCCTTACCTCAAGTCTGCCTATTGGCTTTGACATTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * ** * * * * * * *
163845 AACTTCATTACCTCAAGTCTGCTTGTCGGCTTTGACCCTAGAAACTTCCTTACATCAAGTT
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * ** * * * * * * ** * * *
163906 TGCTTGTCAACTTTAACCTTGGAGACTTCATTACATCAAGTCTGTCTATCGGCTTTGA-CTCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * * * * * ** *
163970 AGACTTTCATACCATTAGTCTGCCTATC-GACTTTGACCTTGGAGACTTGTTTACCATTAA-TG
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
** * * * * ** * * * *
164032 TGGTTGTCAGCTTTGACCTTAGAGACTTCCTTACCTCAAGTTTGCTTGTCGGCTTTGAACTTGAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * * * *
164097 GACTTTCTTACCTTCAAGTCTGCTTATCGGCTTTGATCTTGAAGACTT-CTTAACCTTTATTC
66 GACTTCCTTACCTT-TAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTT-ACCTTAAGTC
* * * * * * * * *
164159 TGCTTGTCAGCTTTGACCTTGGAGACTTCCTTC-CTTTTAGTCTGTC-GTCAGCTTTAACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCC-TCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
** * * * * *
164222 AGACTTCCTTATCC-TTAGTCTATCTATC-GCCTTTGACCCTAGAGACTTCCTCACCTCAATTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* ** * *** * * **
164284 TGCCTATCGGCTTTAACCCTAGAGACTTTTTTACCCACAAGTCTGCTTATCGATTTTGACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * *** ** * * * *
164349 AGACTTCTTTACCCTCTAATTTATTTGTC-GCCACTGACCTTGGAGACTTCCTTACCTTTAACTT
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
* * * * * * * ** * * *
164413 TTCTTATTGGCTTTGACCCTAAAGACTTCTTTACCCTTAAGTCAACCTGTTGGCTTTAACTTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
** ** * * ** * *
164478 AGACTTATTTACCCTCAAGTTTGCCTTTTGGCTTTGACCTTAGAGACTT-CTTCACCTTCTA-TC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTT-ACCTT-AAGTC
* * * ** *
164541 T-CCTTATCGGCTTTGACCCTAGAAACTTCTTCACCTTTCA-TCCGTTTGTCGGCTTTGA-CTCA
1 TGCC-TATCGGCTTTGACCCTAGAGACTTCCTCACCTTT-AGTCTGCCTGTCGGCTTTGACCT-T
* * * * ** * * ** *
164603 GGAAACTT-TTTGACTTTTAGTCTGCCTATTGGCTTTCACCTCTGAGACTTTTTTACCTTTAGTC
63 GGAGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACCT-AGAGACTTCCTTACCTTAAGTC
* * * *
164667 TGCCTATTGGCTTTGACCCTAGAGACTTTCT-ACTTTTAGTCTGCTTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
164731 GACTTCCTTACCTTTAGTCTGCCTATCTGTTTTGACAATTGAGAATTCCTTACCGTT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACC-TTAAGTC
* * * * * * * * * * *
164792 TACTTGTCAGCTTTGACCCTAGAGACTTTCTAACTTTTAATTTGCCTGTCAGCTTTGACCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * ** * * * *
164857 GACTTCCTTACCATTAGTCTGCTTGTTGGCTTTAACCTTCAAAAACTTTCTCAGCCTT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-T-AGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * * *
164919 TAG-CTATAGGTTTTGACCTTGGAGACTTCCTCACCATTAGTCTTCTTTTCAGCTTTGACCGTGG
1 T-GCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * ** ** * *
164983 AGACCTTCC-CACCTTTACTTTGCAAGTTGGCTTTAACTCTAGAGACTTCCTTACCTCAATTC
65 AGA-CTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * **
165045 TGCCTATTGGCTTTGGCCTTGGAGATTTCCTTACC-TCAGTTCTGCTTGTCAGCTTTGACCCTAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAG-TCTGCCTGTCGGCTTTGACCTTGG
** ** ** * * * *
165109 AGACTTCCTTATATCAAGTCTGTTTGTCCA-CTTTAACCTTGGAGACTTCTTTACGCTCAAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGT-CAGCTTTAACC-TAGAGACTTCCTTAC-CTTAAGTC
* * * * * * * * * ** *
165172 TACTTGTCAGCTTTGATCCTAAAGACTTTCGCA-CTATTAGTTTG-CTAGTCAACTTTAACCTTG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCT-TTAGTCTGCCT-GTCGGCTTTGACCTTG
* * * * * * *
165235 GAGACTTCTTTACCATTAGTGTGGCTGTCCGTTTTAACCCTAGAGACTTCCTTACCTCAAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTACCTTAAGTC
* * * * ** * * *
165298 TGCCTATCAGCTTTAATCCT-GAAGACTTCCTGACCTTTTTTCTG-CTCGT-TGCTTTAACCTTA
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCT-GTCGGCTTTGACCTTG
* * * * ** * * * * *
165360 AAGACTTCCTTACCTTCAGTTTACCTGTTGGCTTGAACCCTGGAGACTTCCTCATCTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTACCTTAAGTC
* * * ** * *
165423 TACCTATCGCCTTTGACCCTAGAGACTTACTCACAATTAGTCTGCCTATCGGCTTTGA-CTGTGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
** * * ** *
165487 AGACTTCCCCACCTTTAGTCTGCTTGTCAGCTTTAACTCTCGAGACTTTTTTACCTCAAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * **
165549 TGCTTATCGGCTTTGA-CCTTGTAAACGTT-CTTACCCTTAAGTCTGCCTATCGATTTTGACCTT
1 TGCCTATCGGCTTTGACCCTAG-AGAC-TTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTT
* * * * * *** * * * * *
165612 AGATACTTCTTTACCCTCTAATCTATTTCTCAGTTTTGACC-ATGTTGACTTCCTTACCTTCAAC
63 GGAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACCTA-G-AGACTTCCTTACCTT-AAG
165676 TC
124 TC
* * * * ** * * ** * *
165678 TTCATGTTGGCTTTGACTATGGAGACTTCCTAACCCTCAAGTCTGCCTGTCAGCTTTAACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
** ** * ** * * * *
165743 AGACTTATTTACCCTCAAGTCTGCCTTTTGGCTTTGACCCTAGCGACCT-CTTCACCTTTAGTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT-ACCTTAAGTC
* * * * ***
165806 TTCCTATCGGCTTCGACCCTAGAGACTTTCTAACCTTTAGTCTATTTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * ** * * * *
165871 GACTTCCTTACCTTTAGTCTACCTATTGGCTTTGACCCTAGAGACTT-TTCTACTTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCT-TACCTTAAGTC
* * * * * * **
165932 TGCTTATCGACTTTGACCCTTGAGAATTCCTTACCTTTAGTCTGCCTGCCGGCTTTGACCTTAAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * *
165997 GACCTT--TTAACTTTTAGTTTGCTTGTTAGCTTTGACCTTGGAGACATCCTCACCATTAA-TC
66 GA-CTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
* * * * * *
166058 TGCCTGTCAGCTTTGACCGT-GAAGACTTCC-CTACCTTTAGTCTGCATGTCAGCTTT-AACTCT
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTC-ACCTTTAGTCTGCCTGTCGGCTTTGACCT-T
* ** ** * * * * * * *
166120 AGAGACTTTGTTACCTAAAATCTGCCTATCGGCATTGACCTTG-GATGCTTCCTTA-CTTGAGGT
63 GGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAGAGA--CTTCCTTACCTT-AAGT
166183 C
125 C
* * * * * ** * ***
166184 TGCTTGTCAGCTTTGACCCTGGAGACTTCCAT-ACATCAAGTCTGCTTGTTATCTTTGACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCC-TCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * ** *
166248 AGACTTCCTTATGCTTAAGTCTACCTATCGGCTTTGACCCTAAAGACTTCCGCACCATT-AGTT
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACC-TTAAGTC
* * * * * * * * * * **
166311 TGCTTGTCGGCTTTGACCCTGGTGACTTCTTTACCTTTATTGTGGCTGTTGGCTTTGACCTTAAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * ** * * * ** *
166376 AACTTTCTTACCTCAAGTCTGCTTGTCTGCTTTGAACAT-GAAGACTTTGTTACCTTCAAGTT
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAG-AGACTTCCTTACCTT-AAGTC
* * * * * * * * * * * *
166438 TGCCTATAGACATTGATCCTAAAGACTTTCTGACCTTTATTCTACTTGTTAGG-TTTGACCTTGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTG-TCGGCTTTGACCTTGG
* * * ** * * * *
166502 ACACTT-CTTTCCTTTTAATCTGCCTGTTGGCTTTGACCCTATAGACGT--TT-GCTT--G--
65 AGACTTCCTTACC-TTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * *
166557 T--C-A---GCTTTGACTCTAGAGACTATCCTTACCTTCTTAGTTTGCCTATCGGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGACT-TCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCTT
** * ** * * * * * *
166616 AAAGACATT-TTTACCCTCAAGTCTGCTTGTCGGCTTTAACACCAGAGACTTGCTTTGCCTTTAG
63 GGAGAC-TTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTT-CCTTACCTTAAG
*
166680 TT
124 TC
** * * * * * * * * *
166682 TGCC-AGAGGCTTTGACCTTTGAGACTTCTTGACCTTTAGTTTACCTATCTGCTTTGACCCTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * *** * * **
166746 GATTTCATTTCCTTTTGTCTATTTGTCGGCTTTAACCTTGGAGACTTTCCTTACCTTTTTGGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGAC-TTCCTTACC--TTAAGTC
* * * * * * ** * * *
166810 -GACTTGTTGGCTTTGGCCCTGGAGACTTTCTTACACC-CAAGTCTACTTGTCAGCTTTGACCTT
1 TG-CCTATCGGCTTTGACCCTAGAGAC-TTCCT-CACCTTTAGTCTGCCTGTCGGCTTTGACCTT
* ** ** ** * *
166873 GGAGACTTGCTTATGTCGAGTCTGTTTGTCGGCTTTAACCCTAGAGACCTT-TTTACCGTT-AGT
63 GGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGA-CTTCCTTACC-TTAAGT
166936 C
125 C
* * * * * ** * **
166937 TACCTATCGGCTTTGACCCTTGAGACTTCTTTAGCCTTTACTCTGTTTGTCAGCTTTGACAC-CA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGAC-CTTG
* * * * * *
167001 GAGACTTCCTCACCTTTAAATCTGCCTGTCGGTTTTAACCCTAGAGACTTCTTTACCCTCAAGTC
64 GAGACTTCCTTACCTTT-AGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTA-CCTTAAGTC
* * * * ** * * * * * ** * * *
167066 TTCCTTTCAG-TTCTAACATTGGAAACATCTTAACCCTCAAGTCTGCCT-TTGGCTTTAACCTTA
1 TGCCTATCGGCTT-TGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * * * *
167129 GAGACTT-TTTCTCCTTCAGTCTCCCTATCAGCTTTGACCCTTA-AGACTT-CTTCACCTTTAGT
64 GAGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTT-AACC-TAGAGACTTCCTT-ACCTTAAGT
167191 C
125 C
* * * * * * * * * * *
167192 TGCTTGTCGGCTTTGA-CAT-GAAGACTTCCCCAACTTTAGTTTGCTTATCAGCTTTAACTTTGG
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * * * * * *
167255 AGACTTCCTTATCTCAAGTCTGCCTAT-TGACTTTGACCTTGGAGACTTTCTTACCCTCAAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
** * * * ** * *
167318 TGCCTATCGATTTTGACCCTAGAGACTTCTTGACCCTTTAATCTGTTTCTCGGCTTTGACCCTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * ** * * *
167383 AGACTTCTTTACCTTCAACTCTTCTTGTGGGCTTTGAACCTAAAGACCTCCTTACCCTCAAGTC
65 AGACTTCCTTACCTT-TAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTA-CCTTAAGTC
* * * ** * ** * * * * *
167447 TGCCTATCGACTTTAACCTTAGAGACTTATTTATCCTCAAGTCTACCTTTTGGCATTGACAC-TA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGAC-CTTG
* * * * ** * *
167511 GAGACTT-CTTCGCCTTCAGTCTCCCTATTGGCTTTGACCTTAGAGACTTCCTCACCATT-AGTC
64 GAGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
* * * * * * * * * *
167574 TACTTGTTGGCTTTGACTC-AGGAAACTTTCTGACTTTTAGTCTGCCTATTC-GCTTTGACCTTG
1 TGCCTATCGGCTTTGACCCTA-GAGACTTCCTCACCTTTAGTCTGCCT-GTCGGCTTTGACCTTG
* * * ** * * * *
167637 GAGACTTCCTTACTTTTAGCCTGCCTATTGGCGTTTACCCTAGAGACTTTC-TACTTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGC-TTTAACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * ** * *
167699 TGCTTATTGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTTCCTATCATCTTTAACTTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * *
167764 GACTTCCTCATCC-TTAGTCTACTTATAAGTTTTGACCCTAGAGACTTCCTCACCATT-AGTC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACC-TTAAGTC
* * * * * * * **
167825 TGCTTGTCGGATTTGACCATAGAGACTTCC-CTACCTTTAGTCTGCTTGTCAGCTTTAATTTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTC-ACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * *
167889 AGAATTCCTTACCTTAAGTTTGCCTATC-GACTTTGACCCTAGAGACTTTCCTAACTTTTTTAGT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGAC-TTCCTTAC--CTTAAGT
167953 C
125 C
** * * * * * * * * *
167954 CACCTGTTGGCTTTTA-CCTTGTACATTTCTTTA-CTTTAGTCTGCCTGTCAGCTTTGACCCTT-
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGA-CCTTG
* * * ** * * * *
168016 GAGAATTCCTTACCTTTAGTTTGTCTGTTGGCTTTGACCCTAGAGACTT-TTTAACTTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT-ACCTTAAGTC
* * * * * * * * * * *
168079 TACCTGTTGTCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCTTGTTGGCTTTAACCTTGAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTG-G
* * * * * * *
168144 AAACTTCCTCAACC-TTAGTCTACCAGT-AGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTC
65 AGACTTCCT-TACCTTTAGTCTGCCTGTCA-GCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * ** * * * * * *
168206 TACTTGTTGGC-TTGAACTTTAGAGACTTCCCCATCC-TTAGTCTACCTATCGCCTTTGACCCTA
1 TGCCTATCGGCTTTG-ACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * * ** *
168269 GAGACTTCCTCACCATTAGTTTGCCTATCAACTTTAACCGT-GAAGACTTCCCCACCTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAG-AGACTTCCTTACCTTAAGTC
* * ** * ** * * * ** * * * **
168332 TGCTTGTCAACTTTAACATTGGAGACTTCATTACCTCAAGTCTGCCTATAGGCTTTG-CCCTAAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** ** * * * * * * * * *
168396 GACTTTTTTACCCTCAAGTCTGCCTAT-TGATTTTGACCTTGGACACTTCTTTACCCTCAAATC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
*** * * * * * * * * * * * *
168459 TATTTCTTGACTTTGA-CCTTGTAGACTTCCTTACCTTCAAATCTTCTTATTGGCTTTGACCTTA
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTG
* ** * * * * ** * *
168523 GAGACTTCTTTACCCTCAAGTCTGCTTGTCAGCATTAACCTTGGAGACCTATTTACCCTCAAGTT
64 GAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * *
168588 TGCCTTTTGGCTTTGACCTTAGAGACTTCTTCACCTTTAGTCTCCCTATCGGCTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** * * * *
168653 GACTTCCTCACCTTTAGTTTGCTTGTTGGCTTTGACCTTGGAGATTTCCTTACCTGT-AGGC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCT-TAAGTC
* * * * **
168714 TGCTTATCGGCTTTGACCCTAGTGACTTACT-ACTTTTAGTCTGCCTGTCGATTTTGACTCTT-G
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGAC-CTTGG
* * * * * * * * * * * *
168777 AGAATTCTTTACCTTTTGTTTGCTTG-CCGACTTTGACCTTGAAGACTTTCTAACTTTTAA-TT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACCTAG-AGACTTCCTTAC-CTTAAGTC
* * * * * * * * * **
168839 TGCCTGTTGGCTTTGACCTTGGAGACTTCCTTACTTTTAGTCTGCCTATCAGCTTTAACCTTAAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
168904 GACTTCCTCAACC-TTAGTCTACCTAT-AGGCTTTGACCTTGGAGACATCCTCACCATT-AGTC
66 GACTTCCT-TACCTTTAGTCTGCCTGTCA-GCTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
* * * * * ** * * *
168965 TGCCTGTCAGCTTTAACCATAGAGACTTCC-CACCTTTAGTTTGCAAGTCAGCTTT-AACTCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * * * * * * * *
169028 AGACTTCCTTACC-TCACGTTTGCCTATCGGCTTTGACCTTGGACACTTCTTTA-CTTGAGGTC
65 AGACTTCCTTACCTTTA-GTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTT-AAGTC
* * * * * * ** * ** *
169090 TGCTTGTCGAG-TTTGATCTTAGAGACTTCCTTACATCAAGTCTGCTTGTTAGCTTTAACCTTGG
1 TGCCTATCG-GCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
** * * *
169154 AGACTTCCTTACGCTCAAGTTTG-CTAGTC-GACTTTGACCCTAAAGACTT--TTGCACCATT-A
65 AGACTTCCTTAC-CTTTAGTCTGCCT-GTCAG-CTTT-AACCTAGAGACTTCCTT--ACC-TTAA
*
169214 GTG
123 GTC
* * * * * * * *
169217 TGCTTATCGACTTTGACCCTAGAGACTTCTTTACCATTAGTTTGGCTATCGTCGGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCT-GC-CT-GTCGGCTTTGACCTT
* * ** * * **
169282 AGAGACTTTCTTACCTCAAG-CTTGCCTGTCGGCTTTGAA-CAAGTAGACTTTGTTACCTTTAAG
63 GGAGACTTCCTTACCTTTAGTC-TGCCTGTCAGCTTT-AACCTAG-AGACTTCCTTACC-TTAAG
*
169345 TT
124 TC
* ** * * * *
169347 TGTCTATCAACTTTGATCC-AGGAGACTTCCTGACCTTTATTCTACCTGTCGGCTTTGACCTTGG
1 TGCCTATCGGCTTTGACCCTA-GAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * ** * * *
169411 AGACTTCTTTACCTTTAATCTGCTTGTTGGCTTTCACCCTAGAGACGT--TT-GCTT--GTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * *
169468 -G---A----CTTTGACTCTAGAGACTTTCCTTACCTTCTTAGTTTGCCTGTCGGCTTTGACCTT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCTT
** * ** * ** * * * * * * *
169525 AAAAACTTTTTTGCCCTCAAGTTTGCTTATCAGCTTTGACACTAGAAACTTACTTTACCTTTAGT
63 GGAGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTT-CCTTACCTTAAGT
*
169590 T
125 C
** * * * * * * *
169591 TGTCC-AGAGGCTTTGACCTTTGAGACTTCCTGACCTTTAGTCTGCCTATCTGCTTCGACCTTAG
1 TG-CCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
** * * * * ** **
169655 AGACTTGTTTTCCTTTAGTCTACTTATTGGCTTTAACCTTAGAGACTTTCCTTACCTTCTTGGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGAC-TTCCTTACC-T-TAAGTC
** * * * * * * * ** *
169720 TGTTTGTTGGCTTTGACTCTGGAGACTTTCTTGCACCTAT-GTTTGCCCATCGACTTTGACCTTG
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCT-CACCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * ** * * * ** *
169784 GAGACTTGCTTACATGAAGTCTGTCTGTCGGCTTTAACCCTGGAGACTTTTTTACCTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTACCTTAAGTC
* * * * * ** * * ** *
169847 TGCCTGTCGGCTTTTACCTTGGAGGCTTATTTACTCTTTGGTCTGTTTGTCGGCTTTGACC-TAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCAC-CTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * *
169911 AGACTTCCTTACCTTCAAATTTGCCTATC-GACTATGACCCTAGAGACTTCCTTACCCTCAAGTC
65 AGACTTCCTTACCTT-TAGTCTGCCTGTCAG-CT-TTAACCTAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * * * ** *
169975 TTCTTGTCAGCTTTAACCTTGGAAACTTCTTAACC------CT-CAAGT---C--TG--CTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** * ** * *
170026 GACATCCTCT--CTTTCATTCTCCCTGTTGGCTTTCACCCTTTAGACTTCCTCACCTTTAGTC
66 GACTTCCT-TACCTTT-AGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * *
170087 TGCCTGTCAGCTTTGACCTTAGAGA-TATTCTAACTTTTAGTCTGCCTGTTGGTTTTGACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACT-TCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * *
170151 AGACTTCCTTACCTTTAGTCTGCCTGT-AGTCTTTGACCTTAAAGACTTTC-TACTTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * ** * * *
170212 TACTTGTCGACTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCCTATCAACTTTAACTTTGAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
170277 GACTTCCTCATCC-TTAGTCTACCTATCGGCTTTGACACTAGAGACTTCCTCACCATT-AGTT
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACC-TTAAGTC
* ** * * * * * ** * *
170338 TGCCTATCGGTTTTGACTGTGGAGACTTCC-CACCATTATTCTGCTTATAAGCTTT-AACTCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * * * * * *
170401 AGACTTCCTTACCTTCAGTCTGCTTATCAGCTTTGACCCTAGCA-ATTTTCCTAACCTTCTTAGT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAG-AGA-CTTCCTTACC-T-TAAGT
*
170465 T
125 C
* * ** * * * * * * * * *
170466 TACCTATCAGCTTTGACAGT-GTAGATTTCCTAACTTTTAGTTTGGCGGTCAGTTTTGACCTTAG
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * * * *
170530 AGACTTTCTAACATTTAGTTTGCCTGTTAGCTCTAACTTTGGAGACTTTCTTAGCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * *
170592 TGCCTGTCGACTTTAACTCTAAAGACCTTCTTC-TCTTTAGTCTACTTATCGGCTTTGACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGA-CTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * *
170656 AGACTTTCTCACCTTTAGTTTGCCTAG-CGGCTTTGACCGTGGAGACTTCCCTACCTTTAGTT
65 AGACTTCCTTACCTTTAGTCTGCCT-GTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * ** * * * *
170718 TGCTTGTCAGCTTTAACTCTAGAGACTTCCTTACCTCAAGTCTTCCTATCAGCTTTGACCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * * *
170783 GACTTCCTTACCTCAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTACATCAAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * ** * * * **
170844 TGCTTGTCAGCTTTAACCTTAGAGACTTCCTTATGCTCAAGTTTGCCTGTCGGCTTTGGCCCTAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * ** * * ** * * *
170909 AGACTT-CTGCACCATTAGTTTGCTTGTTGGCTTTGACCGTGGAGACTTTTTTATCTTTAGTG
65 AGACTTCCT-TACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * ** *
170971 TGGCTGTTGGCTTGGACCCTAGAGACTTCCTTACCTCAAGTCTGCCTGTCGGCTTTGAACATT-G
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTG-ACCTTGG
** * * * * * * *
171035 AGACTTTGTTGA-CTTCAAATTTGCCTATC-GACTTTGATCCTAGAGACTTCCTAACCCTT-ATT
65 AGACTTCCTT-ACCTT-TAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTA-CCTTAAGT
171097 C
125 C
* * * * * * * * *
171098 TACCTATCGGCTTTGA-CTTTGAAGACTTCTTTC-CTTTTTGTCTGCCTGTTGGCTTTGACCCTA
1 TGCCTATCGGCTTTGACCCTAG-AGACTTC-CTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * *
171161 GAGA----C--A--TCTGGT-TGTC-G--A-CTTTGAATCTAGAGACTTTCCTTACCTTTTTAGT
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGAC-TTCCTTACC--TTAAGT
*
171213 T
125 C
* * ** ** * ** * *
171214 TGCTTGTCGTTTTTGACCCTA-AGGACTTTTTTACCCTCAAGTCTGCTTATCGGCTTTGACAC-T
1 TGCCTATCGGCTTTGACCCTAGA-GACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGAC-CTT
* * ** * * * * * * *
171277 AGAGACTTGCTTTACCTTTAGT-TTTCT-TAGAGGCTTTGACCCTTGAGACTTCCTAACTTTTAT
63 GGAGACTT-CCTTACCTTTAGTCTGCCTGT-CA-GCTTT-AACCTAGAGACTTCCTTACCTTAAG
171340 TC
124 TC
* * * ** *** *
171342 TGCCTATCTGCTTTGACCCTGGAGACTTCATTTCCTTTAGTCTATTTGTCGGCTTTAACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * ** * * * * *
171407 GACTTTCCTTACCTTCTTGGTCTGCTTGTTGGCTTTGACCTTGGAGAATTTCTTATACC-CAAGT
66 GAC-TTCCTTACC-T-TTAGTCTGCCTGTCAGCTTTAACC-TAGAG-ACTTCCT-TACCTTAAGT
171471 C
125 C
* * * * * * * * ** * * *
171472 TGCCTGTCGGTTTTGACCTTGGAGAGTTGCTTA-CATTATGTCTGTTTGTCGGCTTTAACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTA-GTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * *
171536 AGAACTT-TTTACCTTTAGTGTGCTTGTC-GACTTTGACCCTAGAGACTTTCTCACATTTAGTC
65 AG-ACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * ** * * * *
171598 TACCTGTCTACTTTGACCCTAGAGACATT-GTGACTTTTAGTCTGCCTGTTGGCTTTGA-CTCTG
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TG
* * * * * * * * * ** *
171661 GAGACTTCCTT-GCTTTAACTCTACTTGT-TGTCTTTGACCTTGGAAACTTTCTTATTTTCAAAT
64 GAGACTTCCTTACCTTT-AGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACCTT-AAGT
171724 C
125 C
* * * * * ** * ** * *
171725 TACCTGTCAGCTTTAACCCTAGAGACTTCCTTACCCTCAAGTC-GTCCTATCATCTTTAACCTTA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTG-CCTGTCGGCTTTGACCTTG
* * ** ** * *
171789 TAAACTT--TTGAACCCTCAAGTCTGCCAT-TTGGCTTTGACCTTAGAGACTTCCTCT-CCTTTA
64 GAGACTTCCTT--A-CCTTTAGTCTGCC-TGTCAGCTTTAACC-TAGAGACTTCCT-TACCTTAA
171850 GTC
123 GTC
* * * * * *
171853 TCCCTATCGGCTTTGACCCGT-GAGACTTTCTCACCTTTAGTCGGCGTGTCAGCTTTGACCATGG
1 TGCCTATCGGCTTTGACCC-TAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * ** * * * * * * *
171917 AGGCATT-C-TAGGTTTTAGTTTGCCTGTTGGCTTTGACCATGGAGACTTTCTCACATTTAGTT
65 AGAC-TTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
** * * * * * * * * *
171979 TGTTTGTCGGTTTTGATCCTAGAGACTTTCT-GCTTTTAGTCTACTTGTCGGCTTTTACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * *
172043 TG-CTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACTTTGGATACTTCCTCATCCTT-AGTC
66 -GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTA-CCTTAAGTC
* * * * *
172104 TACCTATCGGCTTTGACCCTAGAGACTTCCTCACCATTAGTCTGACTGTCGGCTTTGACCATAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * *
172169 GATTTCCCTACCTTTAGTCTACTTGTCAGCTTTAA-CTATGGAGACTTCCTTACCTTAAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTA--GAGACTTCCTTACCTTAAGTC
* * * * * ** *
172230 TGCCTATCAGCTTTGACCCTAGTGATTTTCCTAACCTTCTTAGTCTACCTGTCAACTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGA-CTTCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCTT
** * * * * * * * * * * *
172295 ACAAATTTCCTAACTTTTAGTCTGCCTATCAGTTTTGACTCTTGAGACTAT-CTGACTTTTAGTC
63 GGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACT-TCCTTACCTTAAGTC
* * ** * * * * * * *
172359 TACCTGTTAGCTTTGACCTTAGAGACTTTCTTACCTTTAGTCTACCTATCAGCTTT-ACCCTTGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGA-CCTTGG
* * * * * * *
172423 AGACTTACTCATCC-TTAGTCTACTTGTC-GACTTTGACCTTAGAGATTTCCTCACCCTT-AGTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * ** * **
172485 TGCTTGTCGACTTTGACCGTGGAGACTT-CTCCACCTTTAGTCTGCTTGTTAGC-TTCAAATCTG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCT-CACCTTTAGTCTGCCTGTCGGCTTTGACCT-TG
** * * ** * * * *
172548 GAGACTTCCTTACCTCAAGTCTTCCTATTTGTTTTGACCTTGGAGACTTCCTTAACTT-AGATC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAG-TC
* * * * * * ** * * *
172611 TGCTTGTCGGCTTTGACCTTGGAGACTTCCTTACATCAAGTCTGCTTGTCAGCGTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * ** ** * * ** *
172676 GACTTCTTTATGCTGAAGTCTTTCTATCGGCTTTAACCCTAGAGACTTCCGCACGATT-AGTC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAA-CCTAGAGACTTCCTTAC-CTTAAGTC
* * * * ** * *
172738 TGCCTATCGACTTTGACCCTAAAGACTTCTTTACCAATA-T-TGCAGCTGTCGACTTTGACCTTA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGC--CTGTCGGCTTTGACCTTG
** * * * * *
172801 GAGACTTCCTTACCTCAAGTCTGCCTG-CTAGCTTTGAA-CTTGAAGGCTTTCTTACCCTCAAAT
64 GAGACTTCCTTACCTTTAGTCTGCCTGTC-AGCTTT-AACCTAG-AGACTTCCTTA-CCTTAAGT
*
172864 T
125 C
* * * * * * * * * *
172865 TCCCTATCGGCTTTGATCTTGGAAACTTCCTGACCTTTATTCTACCTGTCAGCTTTGACCTTCGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * ** *
172930 GTCTTCTTTACCTTTAGTTTGCCTATTGGCTTTGACCCTAGAG--------A---T--GTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * **
172978 TGCCTATCGGCTTCGACCTTGGAGACTTCTTTACCTTTAGTCT-ACTAATCAGCTTTAACCCTAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCT-GTCGGCTTTGACCTTGG
* * * * * * *
173042 AGACTTCCTCAACC-TTAGTCTACCTGT-AGGGTTTGACCTTGGAGACTTCCTCA-CTATTAGTC
65 AGACTTCCT-TACCTTTAGTCTGCCTGTCA-GCTTTAACC-TAGAGACTTCCTTACCT-TAAGTC
* ** * * * * ** * * *
173104 TGCCTGTTAGCTTTGACCGTAGAGACGTTCC-CACCTTTAGTCTACATTTTAGCATT-AGCTCTA
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TG
** * * * * * *
173167 GAGACTTCCTTACCTCAAGTCTGCTTATC-GACTTTGACCTTGGAGACTTCCTTACCTGAGGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * *
173230 TACTTGTCGGCTTTGACCCTAGAGACTTCTTTACATTAAGTCTGCTTGTCAGCTTTAACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * **
173295 GACTTCCTTATGCTTAAGTCTGCCTATCGGCTTCGAA-CTTGAAGACTTTCGCACCATT-AGTC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTT-TAACCTAG-AGACTTCCTTACC-TTAAGTC
* * * * * * * * * * * ** *
173357 TGCTTGTCGACTTTGACCTTGGAAACTTCTTTACCTTTTGTGTGTCTGTCCACTTTGACCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * *
173422 GACTTCCTTA-CTACAGGTCTGCCTGTC-GACTTTGAACTTGGATACTTTCTTACCCTCAAGTC
66 GACTTCCTTACCTTTA-GTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * * * **
173484 TGCCTTTCAGCTTTGATCTTGGAGACTTCCTAACCTTTATTCTGCTTATCGACTTTGACCTTAAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * ** * * * * * *
173549 GACTTTCTTACTTTTAGTTTGACTATTGGCTTTGACCTTGGAGACCTCCTCATCTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * ** * *** *
173610 TACTTATCACCTTTGACCCTAGAGACTTCCTCACCATTAGTCTGCCTGTCAATTTTGA-CTGTGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* ** * * * *
173674 AAACTTCCCCACCTTTAGTCTGCTTGTCAGCTTTAACTCTAGAGACTTCTTTTCCTCAAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* ** * ** * * ** * *
173736 TGCCTATCGACTTTGACCCTAGAGACTTTTTTACCCTCGAGTCTGCCTATTGATTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * *** * * * * * *
173801 AGACTTCTTTACCTTTTAATCTATTTCTC-GACTTTGACATTGGTGACTTCCTTACCTTCAACTC
65 AGACTTCCTTACC-TTTAGTCTGCCTGTCAG-CTTTAAC-CTAGAGACTTCCTTACCTT-AAGTC
* * * * * * * *
173865 TTCCTGTTGGCTTTGACCTTAGGGACTTCCTTACCCTTTAGTCTGCCTGTCAGCTTTTAACCTTG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGC-TTTGACCTTG
** ** * ** *
173930 GAGACTTATTTACCCTCGAGTCTGCCTTTTGGCTTTGACCCTAGAGACTT-CTTCACC-TACAGT
64 GAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT-ACCTTA-AGT
173993 C
125 C
* * * *
173994 TCCCTGTC--C---GACCCTAGAGACTTCCTCACCTTTAGTCTTCTTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * * * *
174054 AATTTTCTTATCTCTAGTCTGCCTCTC-GACTTTGACCCTAGAGACTTTC-TACTTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * ** * *
174114 AGCTTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTAGTCTTCTTGTTAGCTTTAACTTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
174179 GACTTTCTCATCC-TTAGTCTACCTATCGGCTTTGACCCTAGAGACTTCCTCACCATT-AGTC
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACC-TTAAGTC
* ** ** * * * * ** * **
174240 TGCCTGTTAGCTTTGACTGTGGAGACTTCCCCAACTTTAGTCTGCTTGTTAGCTTT-AACTCTAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * * * * *
174304 AGACTTCCTTACCTTAAGTTTGCCTATC-GACTTTGACCCTAGAGACTTTCCTAACCTTCTTAGT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGAC-TTCCTTACC-T-TAAGT
174368 C
125 C
* * * * * * * * * * * ** *
174369 TACCTGTCAGCTTTGATCCTACA-ATTTCTTAACTTTTAGTGTGCCTATCGATTTTGACCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * * * *
174433 GACTT-TTTGACTTTTTGTTTGCCTGTCGGCTTTGACCTTTGAGAATTCCTTACCTTTAGTT
66 GACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * ** ** * *
174494 TGCCTATCGACTTTGATCGTGGACACTTCCCCACCCTTAGTCTGTTTGTCAACTTT-AACTCTCG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * * * * * *
174558 AGACTTCCTTACCTTAAGT-TCGCCTATCGGCTTTGACCCTAGAGATTTTCCTAACCTTCTTAGT
65 AGACTTCCTTACCTTTAGTCT-GCCTGTCAGCTTT-AACCTAGAGA-CTTCCTTACC-T-TAAGT
174622 C
125 C
* * * * * * * *
174623 TACCTATCGGCTTTGACCCTACAGATTTCTTAACATTTAGTTTACCTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * ** * * * * * *
174688 GACTTTCTAACTTTTAGTTTGCCTCTTGGCTTTGACTCTTGAGAATTTCTTACCTTTAGTG
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * * *
174749 TGGCTGTTC-GCTTTGACCCTAGAGACTTCTTTACATTTAGTGTGGCTATCCGTTTTGACCATAG
1 TGCCT-ATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * * * *
174813 AAACTTCCTTACCTCAAGTCTGCCTGTC-GACTTTGAACTTGGAGACTTTCTTACCCTCAAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTA-CCTTAAGTC
* * * * * * *
174876 TGCCTATCAGCTTTGATCTTGGAGACTTCCTGACCTTTATTTTGCCTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * ** * *
174941 GACTTCCTTGCATTTAGTTTGCCTATTGGCTTTAACCTTGAAGACTTCCTTATCC-TCAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTTA-CCTTAAGTC
* * * * *** * * * * * * * *
175002 TACCTATTGCCTTCGAAGTTAGTGACTTCCTCACCATTAGTCTACTTGTTGACTTTGACCGTGAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * *
175067 GACTTCCCCACCTTTAGTCTGCTTATTAGCTTTAACTCTAGAGACTTCCTTACCTCAAGTT
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * ** * ** *
175128 TGCCTATTGACTTTGACCTTAGAGACTT-TTATACCCTGAAGTCTACCTGTCAACTTTGACCCTA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCT-CA-CCTTTAGTCTGCCTGTCGGCTTTGA-CCTT
* * * * * * * * * * *
175192 GAGACACTACTTTACCTTTAGTTTGCCAGTC-GACTATGACCTTAAAGGCTTCATTACCTTTAGT
63 G-GAGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACCTTAAGT
175256 C
125 C
* * * * * * *
175257 TGCCTATCTGCTTTGACCTTGGAGACTTTCTTACCTTTAGTCTGCTTGTTGGCTTTGACCATTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACC-TTGG
* * ** ** * * *
175322 AGACTTTCCTTACCTTCTTAGTCTACTTGTTGGCTTTGGCCTTAGAAACTT-TTTACCCATAAGT
65 AGAC-TTCCTTACC-T-TTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGT
175386 C
125 C
* * * * * * * * * * * ** * * *
175387 TGCTTATCGGCTTTGACCTTGGAAACCTGCTTACGTTAAGTTTGTCTGTCAACTTTAACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * ** * *
175452 GGCTTCTTTACCTTTAGTCTACTTGTTAGTTTTGAAGTTGGAGACTTCTTTACCCTCT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTA-CCT-TAAGTC
** * * * * * *
175514 TGTTTGTCGGCTTTGACCCTAGAGACTTCGTTACCTTCAAGTCTGCCTGTCAGCTTTAACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGG
** ** * * ** * * *
175579 AGACTTCCTTACCCTCAAGTCTGTTTATCAACTTTAACCTTAGAGACTTTTTTTCCCTCAATTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGAC-TTCCTTACCTTAAGTC
* * * * * * * *
175643 TGCTTTTTGGCTTTGACCATAGAGACGTCCTCACCTTTAGTCTACCTATCAGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * ** * * * ** * *
175708 GACTTCCTCACCTTTAGTCTACCTATCGGCTTTGTCTTAGAGACTTTCTGATTTTTAGTT
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * * * * * *
175768 TGCCTGTTGGCTTTTACCTTAAAAACTTCTTTAGCTTTAGTTTGCCTATCGACTTTGGCCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** * * * **
175833 GACTT-TTTACTTTTAGTCTGTCTGTTGGGTTTTACCTTGGAGACTTCCTTACCTTTTGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* ** * * * * * * * * * *
175893 TACCTATCAACTTTAACCATGGAGTCTTCCTCATCTTTAGTCTACTTATCGACTTTGACCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * * *
175958 AACTT-CTTCACCATTAGTCTGCCTATCGGCTTTGACCATAAAGACTTCTTTACCTTTAGTT
66 GACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * ** * ** * * * * * * * * * **
176019 TGCTTGTCAACTTTAACTTTGGAGGCTTCTTTACC-TCATGTCTGCCTTTCAGCTTTAACCCTAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTA-GTCTGCCTGTCGGCTTTGACCTTGG
* *** * * * * * * **
176083 AGACATTCCTAACCTTCTTAGTCTATTTGTCTGCTTTGACCCTACAGATTTCCTAACTTTTTGT-
65 AGAC-TTCCTTACC-T-TTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * *** * *
176147 TAGCATGTCGGTTTTAACCCTTA-AGAATTCCTTACCTTTAGTCTGCCTATCTATTTTGACCCTA
1 T-GCCTATCGGCTTTGACCC-TAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * *
176211 GAGACTTCCTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTG-GACATTTTCCTTACCTTCTTAG
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAGAGAC---TTCCTTACC-T-TAAG
*
176275 TT
124 TC
* * * * * * * ** * * * * * *
176277 TGCTTGTTGGCTTTAACCCTAAAGACTTTCTTACCCTAAAGTCTACCTATTGGCTTTAACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * ** ** * * * * * *
176342 AGACTTGCTTACGTCAAGTCTGTTTATCAGCTTTGATCTTGGAGACTTCCTCACCTTTAG-C
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * ** *
176403 TTGTCTGTCGGCTTTAACCTTAGAGACTTCTTTACCTTTTAGTCTGTTTGTCGGCTTTGATCTTG
1 -TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACC-TTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * ** * * * * **
176468 GAAACTTCTTTTGCATAAAGTTTGCCTGTCGGCTTTAACCTTGGAAACTTCCTTACCCTCGAGTC
64 GAGACTTC-CTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * ** * ** * * * ** * *
176533 TGCTTGTCGGCTTT-AACCTCAGAGACTTTTTTACCCTCAAGTATGCCTTTTGGCTTCAACCCTA
1 TGCCTATCGGCTTTGACCCT-AGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * * * * * *
176597 AAGACTTCCTTACCTTTAGTTTGCTTATCGGCTTTGAGCCTAGAGACTT-TTTCACATTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT-ACCTTAAGTC
* * * * * * * **
176660 TACCTGTCGGCTTTGACCCTAGAGACTTTCTAACTTTTAGTTTGCCTATTAGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
176725 GACTTCCTTACCTTTAGTTTGCTTATCGGCTTTGAACCTAGAGACTTTC-TACTTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * *
176785 TGCTTGTCGACTTTGACCTTGGAGACTTCCTCACCTTTTA-TCTGCCTATCGGCATTAACCTTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACC-TTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * *
176849 AGCCGTCCTCATCC-TTAGTCTACTTATCACCTTTGACCTTAGAGACTTCCTCACCATT-AGTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
* * * * ** *
176911 TGCCTATCGGCTTTGACCAT-GAAGACTTCCCCATCGTTAGTCTGGTTGTCGACTTTGACCTTGG
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * * ** * *
176975 AAACTTTCTAACTTTTAGTCTGCTTGTTC-GCTTTGACTTTAGAAACTTTTTTAGCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTG-TCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * *
177037 TGCTTGTCGTCTTTG-CCCTAGAGACTTTCT-ACTTTTAGTCTGCCTATTGGGTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * * * * *
177100 GACTTCCTTACCTTTTGTCTACCTATCGGATTTAACCTTGGAGTCTTTCTCATCTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * *
177161 TACCTATCGACTTTGACCTTCGAGACTTCTTCACC-TTAGTCTGCCTATCGACTTTGACCATGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * * *
177225 GACTT-CTGCACCTTTAGTCTGCTTGTCAGCTTTAACTTTGGAGGCTTCTTTACCTCATGTC
66 GACTTCCT-TACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * *
177286 TGCCTATCGGCTTTGACCCTCGAGACGTTCCTAACCTTCTTAGCCTACTTGTCAGCTTTGACCCT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCTT
** * * * * * * *
177351 ACAGATTTCCTAACTTTTTGT-TAGCCTATC-GATTTCAACCCTTA-AGAATTCCTTACCTTTAA
63 GGAGACTTCCTTACCTTTAGTCT-GCCTGTCAGCTTT-AA-CC-TAGAGACTTCCTTACC-TTAA
177413 -TC
123 GTC
* * * *
177415 TGCCTATCAGCTTTGACCCTAGAGACTTCCTTACCTTTAGTTTGCTTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * ** * * * *
177480 CATTTTCCTCACCTTCTTAGTTTGCTTGTTTGCTTTGACCCTAGAAACTTTCTTACCCTGAAGTC
66 GA-CTTCCTTACC-T-TTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTA-CCTTAAGTC
* * * * ** ** * * * * *
177545 TGCCTATTGGCTTTAACCCTAGAGACTTGCTTATGTCAAGTTTGTCTATCGGCTTTGATCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
177610 GACTTCTTTACCTTTAGTATGTCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
*** * * ** * * *
177672 TATTTGTCGGCTTTGA-CCTAGGAGACTTCCTTACCATAAAGTCTACCTATCGGCTTTGACCCTG
1 TGCCTATCGGCTTTGACCCTA-GAGACTTCCTCACC-TTTAGTCTGCCTGTCGGCTTTGACCTTG
** * * * * * *
177736 GAGACTTCCTTACCCTCAAGTTTGCTTGTCGGCTTTAACCTTGGAGACTTCTTTACCCTCAAGTC
64 GAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * *
177801 TACCTTTTGGCTTTAACCCTAAAGACTTCCTCACCTTTAGTCTGCTTATCGACTTTGAGCC-TAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGA-CCTTGG
* ** * * * * * * * *
177865 AGACTT-TTTCATATTTAGTCTGCTTGTCGGCTTTGACCCTAAAGACTTTCTGACTTTTAGTC
65 AGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * *
177927 TGCCTGTTGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTTTGCCTGTTGGCTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
177992 GACTT-TTTACTTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTTA-TC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACC-TTAAGTC
* * * * * * * * * ** * **
178052 TGCCTGTCGGCATTAACCTTGGAGCCTTCCTCATCCTTT-GTCTACTTATCACCTATGACC-CAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * *
178115 AGACTTCCTTACCATTAGTCTGCCTGTCAGCTTTGACCGT-GA-AGCTTCC-CATCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGA-CTTCCTTACCTTAAGTC
* * * * * * ** ** * *
178175 TGCTTGTTGGCTTTAACTCTAGAGACTTTCTTTCCTCAAGTCTGCCTATCGGCTTTGATCC-TAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGA-CCTTGG
* ** * * * * * * *
178239 AGACTTTCTTACCCTCAAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTGCTTTACCTTTAGTT
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTT-CCTTACCTTAAGTC
* * * * * * * * * * *
178303 TGCCCATTGGCTTTGACCTTAGAGACCTCGTGACCTGTAGTCTGCCTATCTGCTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * *
178368 AACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTCACCTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * *
178429 TACCTATTGGCTTTAACCTTAGAGACTTCCTCACCTTTAG-CTTGCCTGTCGACTTTGGCTTTGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTC-TGCCTGTCGGCTTTGACCTTGG
* * * * ** * * * * * *
178493 AGACTT-TTTGACTTTTAGTCTACTTGTTGGCTTTGACCTTGAAGACTTCTTTAGCTTTAGTT
65 AGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTTACCTTAAGTC
* * * * * * * * *
178555 TGCTTGTCGACTTTGACCCTAAAAACTT-TTTACTTTTAGTCTGCCTATCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * *
178619 GACTTCCTTACCTTTAGTATGCCTGTC-GACTTTAACCTTGGAAACTT-CTTCATCCTT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTT-A-CCTTAAGTC
* * * * * * * *
178680 TACCTATCGACTTTGACCCTAGAGACTTCTTCACCATTACTCTGCCTGTCGACTTTGACCATGAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * *
178745 GACTTCCCCATCTTTAGTTTGCTTGTCAGCTTTAACTCTAGAGACTTCCTTACCTCATGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * **
178806 TGCCTTTCGGCTTTGACCCTAAAGACTTTCCTAACTTTCTTAGTCTACTTGTCGGCTTCGAGTTT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCAC-CT-TTAGTCTGCCTGTCGGCTTTGACCTT
* * * * * ** * * * *
178871 GTACA-TTTCTTAACTTTTAGTCTGCCTATTGGCTTTGACGCTTGAGGA-GTCCTTACCTTTAGT
63 GGAGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGA-GACTTCCTTACCTTAAGT
178934 C
125 C
* * * * * * ** *
178935 TGCCTATCGGTTTTGACCCTAGAGACTTTCTGACTTTTAGTCTACTTGTTAGCTTTG-CCTTTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACC-TTGG
* * * * * * * * * *
178999 AGACTTCTTTACCATTAGTTTGCCTATCGGCTTTAACCTTGGAGATTTCCTCATCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * * *
179061 TACCTGTCGGCTTTGACCTTGGAGACTTCCTCACCTTTAGTCTACTTGTCAGCTTT-AACTCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* ** * * * * * * *
179125 AGACTTTCTTACCTCAAGTCTGCTTATC-GACATTGACCTTGGAGACTTCCTTACCTCAAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTTAACC-TAGAGACTTCCTTACCTTAAGTC
** * * * * ** * * ** * **
179187 TGTTTATCGACTTTGACCCTAGAGACTTTCTTACATGAAGTCTACTTGTTAGCTTTAACCTCAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * *** *
179252 GACTTCCTTACGCTCAAGTCTGCCTGTCGGCTTTGACCCTAAAGACTTTCGCCCCATT-AGTT
66 GACTTCCTTAC-CTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACC-TTAAGTC
* ** * ** * * * * * * **
179314 TGCCTGTTAGCTTTGACCCTGGAGACTTTTTTACCTTTAGTATGGCTGTCCGTTTTGACCCTAAA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * * *
179379 GACTTCCTTACCTCAAGTTTGCTTGTCAGCTTTGAACTTGGAGACTTTCTTACCCTCAAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * * * *
179441 TGCCTATCGGCTTTGATCTTGGAGACTTCCTAACCTTTATTGTACTTGTCGACTTTGACCTTGGT
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** *
179506 GACATCTTTACCTTTAGTCTGCTTGTTGGCTTTGACCTTAGA-A-------A-C---A-TC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
** * * * * * * * *
179554 TATCTATCGGCTTTGACGCT-GTAGAGTTTCCTTACCTTCTTAGTTTGCTTGTCGACTTTAACCC
1 TGCCTATCGGCTTTGACCCTAG-AGA-CTTCCTCACC-T-TTAGTCTGCCTGTCGGCTTTGACCT
* * ** ** * * * * * * * * *
179618 TAGATACTTTTTTACCCTCAAGTTTGCTTATCAACTTTGACCCTGGAAACTTGCTTTACCTTCAG
62 TGGAGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTT-CCTTACCTTAAG
*
179683 TT
124 TC
** * * * * * * ** **
179685 TGCCCGTCGGCTTTAACCTTAGAGACTTCATGACCTTTA-ACTTGCCTATCTACTTTGACCTTCA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTC-TGCCTGTCGGCTTTGACCTTGG
* * * *** * **
179749 AGACTTCCTTACCTTTAGTTTGCCTATTAGCTTTGATGATGGAGACTTACCTTACCTTTTTTGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTT-CCTTACC--TTAAGTC
* * * * ** * * * **
179814 TGCTTGTTGGCTTTGACCCT-GAAGACTAT-CTTACCCTCAATTTTGGCTGTCGATTTTGACCTT
1 TGCCTATCGGCTTTGACCCTAG-AGACT-TCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTT
* * ** * * * * * *
179877 GGAGACTTGCTTACGTCAAGTCTGTCTGTCGGCTTTGACCATGGAGACTT-TTCTACCTTTAGTC
63 GGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCT-TACCTTAAGTC
* * * ** * * * * * * ** * *
179941 CGTCTACCAACTTTGACCCTGGAGTCTTCTTTAACCTCTAGTATGTTTGTCGGCTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTC-CTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * *
180006 AGACTTTC-TACTTTTAGTCTGCTTGTCGGCTTTGACCTTCGAGACTTTCTTACCTTGAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * * *
180067 TACTTGTCGGCTTTAACCTTGGAGACTTCCTCATCC-TTAGTCTACCTATCGCCTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * ** * *
180131 AGACTTCCTCATCATTAGTCAGCCTATC-GACTTTGATCGT-GAAGACTTCCCCACCTTTAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAG-AGACTTCCTTACCTTAAGTC
* * * * * * ** * * * **
180193 TGCTTGTCAGCTTTAACTCTAGAGACTTCCTTACCTCAAGTCTACTTATCGATTTTGACTCTT-G
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGAC-CTTGG
* ** * * *
180257 AGACTTTCTTACCCTCAAGTCTACCTGTC-GACTTTGACCCTAGAGACTTTCTTTACCTTTAA-T
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGAC-TTCCTTACC-TTAAGT
*
180320 T
125 C
** * * * * *** * *
180321 TGCCCGTCGACTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTATATACTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * *
180386 GACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTAACCTTGGAGATTTCCTTACCCTCAAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* * * * * * * *
180448 TGCC-ATTTGGCTTTGACCTTAGAGACTTCCTCA-CTTTCAGTCTACCTATCGACTTTAACCCTA
1 TGCCTA-TCGGCTTTGACCCTAGAGACTTCCTCACCTTT-AGTCTGCCTGTCGGCTTTGACCTTG
* ** * * * * * *
180511 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTTCTAACTTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * *
180574 TGCCTATTGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCAT-GA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * ** * * *
180638 GGCTT-TTTACTTTTAGGCTGCTTGTTGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * * * *
180698 TGCTTGTCGGCTTTAACCTTAGAGACTTCCTCATCC-TTAGTCTACTTATCGCCTTTGACATTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * ** * *
180762 AGACTTCCTCACCATTAGTTTGCCTGTCAACTTTGACCGT-GAAGACTTCCCCACTTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAG-AGACTTCCTTACCTTAAGTC
* * *** * * * * ** * * * * *
180824 TGCTTGTTATCTTTAACTCTGGAGACTTCCTTACCTCAAGTATGCCTATCAGCTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* ** * * * * * * *
180889 GACTTTCTTACCCTCAAGTCTACCTGTCAGCTTTGACCTTGAAAACTTGCTTTACCTTTAGTT
66 GACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTT-CCTTACCTTAAGTC
* * * * * * * * *
180952 TGCCAATCGGATTTGTCCCTAGAGACTTCCTAACCTTTAGTCTACCTATCTGCTTTGACCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
** * * * * * * * *
181017 GACTTCCTTACCTTTTTTCTTCTTGTCGGCTTTAACCTTGGGGATTTTTCTAATCTTCTTAA-TC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGA-CTTCCTTA-C--CTTAAGTC
* * * * * * * ** * * * *
181081 TGCTTATTGGCTTTAACCTTAGAAACTTTCTTACCATGAAGTCTACCTATCAGCTTTGACCCTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACC-TTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * ** * * * *
181146 ACACTTGCTTA-CTTAAGTCTATCTGTC-GACTTTGACCCTAGAGATTTCTTTACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * * ** * * *
181207 TGCCTGTGGGCTTTGACCCT-GAAGACTTCTTTACCCTCT-G-GAGACT-TC-G--TT-ACATTT
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * * * * * * * * * *
181264 AAGTCTGCATGTCAACTTT-GAC--CCTG-GAGAATCCTTACCCTCA-AGTCTGCTTGTCGACTT
64 GAGACTTCCT-T-ACCTTTAGTCTGCCTGTCAG---CTTTAACCT-AGAGACTTCCT-T--ACCT
181324 TAA---
120 TAAGTC
* * ** * * * * **
181327 --CCT-TGGAGATTT----CT--TTAC--CCTCA-----AGTCTACCTTTTGGCTTTGACCCTAA
1 TGCCTATCG-GCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * * * ** * * *
181376 AGACTTTCTTACCATCAATTTGCCTATCGGCTTTGTCCTTAGAGCCTTCCTCACCTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * ** * * * * *
181438 TGCCTATCGACTTTGACCTTTGAGAATTTTTGACTTTTAGTTTGCCTG-CTGACTTTGACCTTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTC-GGCTTTGACCTTGG
* * * ** * * * * * *
181502 AGACTTTCTCAGCTTTAGTCTGTTTATCGGCTTTGACTCTAGAGACTTTC-TACTTTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * ** * * * * *
181563 TGCTTGTTGACTTTTACGTTGGAGACTTCCTTACTTTTAGTTTGCCTGTCGGCTTTAACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * ** *
181628 GACTTCCTCA-TTCTTAGTCTACTTATTGGCTTTCACCCTAGAGACTT-CTTCACCATT-AGTC
66 GACTTCCTTACCT-TTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT-ACC-TTAAGTC
* * * ** * * * * * * *
181689 TACCTGTCAGCTTTGACTGTGGAGACTTCC-CTACCATTAGTCTACTTGTCAGC-TTCAACTTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTC-ACCTTTAGTCTGCCTGTCGGCTTTGACCTT-G
* * * * * *
181752 GAGACTTTCTTACC-TCACGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCCTAACCTTCTTAG
64 GAGACTTCCTTACCTTTA-GTCTGCCTGTCAGCTTT-AACCTAGAGAC-TTCCTTACC-T-TAAG
181816 TC
124 TC
* * * * * * ** *
181818 TACTTGTCGCCTTTGACCCTATAGATTTCCT-AAATATTAGTCTACCTGTCGGCTTTGACCCTT-
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCT-TTAGTCTGCCTGTCGGCTTTGA-CCTTG
* * * * * *
181881 GAAAATTCCTTACCTTTAGTCTGCCTATCTA-CTTTGACTCTGGAGACTTCCTTACCTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCCTGTC-AGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * * * * ** * *
181944 T-TCTATCAGCTTTGACCTTGGAGACTTTCATTACCTTTTTAGTCTACTTGTTAGCTTTAACCCT
1 TGCCTATCGGCTTTGACCCTAGAGAC-TTCCTCACC--TTTAGTCTGCCTGTCGGCTTTGACCTT
* * * * * * * * *
182008 AGAGACTTTCTTACCCTTAAGTCTGCTTGTC-GATTTTGACCCTAGAGACTTGCTTACGTCAAGT
63 GGAGACTTCCTTA-CCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTTAAGT
182072 C
125 C
** * * * * * * *
182073 TGTTTGTCGGCTTTGA-CCTCGAAGGCTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCCTGG
1 TGCCTATCGGCTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * ** * * *
182137 AGACATT-TTTACCCTCTAGTCTGTTTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTAAAGTT
65 AGAC-TTCCTTA-CCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTTACCTT-AAGTC
* * * * * ** * * * *
182201 TTCCTGTCGGCTTTGACCTTAGACACTTCCTTACCCTCGAGTCTGTCTATCGGCTTTAACCTTCG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * * ** ** * *
182266 AGACTTCTTTACCCTCAAGTCTACCTTTTGGCTTTGCCCTTAGAGACTTCCTCT-CTTTTAGTC
65 AGACTTCCTTA-CCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCT-TACCTTAAGTC
* * * ** * *
182329 TGCCTGTCGACTTTGACCGTAGAGACTTTTTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * ** * * *
182394 GACTTTCTGACTTTTATTCTGCTTGTTGGCTTTAACCTTGGAGACTTCTTTACCTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * ** *
182455 TGCCTGTTGGCTTTGACCCTAGAGACTT-TTTACTTTTAGTCTACTTGTCAACTTTGACCTTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * *
182519 GACTTCCTCACCCTTAGTCTGCCTGTCGGGTTTAACCTTGAAAACTTCCTCATCCTT-AGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAG-AGACTTCCTTA-CCTTAAGTC
* ** * * * * * *
182580 TACCTATCACCTTTGACCCTAGAGACTTCCTTACCATTAGTTTGCCTATCGACTTT-A-TTTGTA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTG--
* * * * * *
182643 AAGACTTTCC--ACCTTTAGTCTGCTTATCAACTTTAACTCTAGAGACTTCCTTACCTCAAGTA
64 GAGAC-TTCCTTACCTTTAGTCTGCCTGTCAGCTTTAAC-CTAGAGACTTCCTTACCTTAAGTC
* * * * * *
182705 TGCCTATCGGCTTTGACCCTA-AGGATTTTCTTACCCTTAAGTTTGCCTGTCAGCTTTGACCTTG
1 TGCCTATCGGCTTTGACCCTAGA-GACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTG
* * * * ** * * *
182769 GAGACTTGCTTTACTTTTAGTTTACCCATC-GACTTTGACCCTAGAGACTTCCTGACCTTTAGTC
64 GAGACTT-CCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * * *
182833 TGCCTATCTGCTTTGACTCTAGAGACTTTCTTACCTCTAGTCTGCCTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** * * * * *
182898 TACTTTCCTTACCTTTTTAGTCTACTTGTTGGCTTTGACCTTTGAAACTTTCTTATCCTCAAGTC
66 GAC-TTCCTTACC--TTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
** * * * * * * ** * * * * *
182963 TAACTGTCGGCTTTGACCTTGGAGACTTGCTTACGTCAAGTCTGTCTGTCGACTTTGGCCCTAGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * ** *
183028 GGCTTCTTTACCTTTAGTCTGCCTGTC-GACTTTGACCCTAGAGACTTTTTTACCCTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTA-CCTTAAGTC
*** * * * * * * *
183090 TATTTGTCGGCTTTGACTCTAGAGACTTCCTTACCTTCAAGTCTACTTGTCGGCTTTGACCTTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGG
* ** * * * *
183155 AGACTTCCTTGTCCTCAAGTCTACCTATCAGCTTTAACCTTAGAGACTTCTTTACCCTCAAGTC
65 AGACTTCCTT-ACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTA-CCTTAAGTC
* ** ** * * * * * * *
183219 TGCCTGTTAGCAATGGCCCAAGAGACTTCCTCACCTTCAGTTTGCTTGTTGGCTTTGA-CTATAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGG
* * * * * * * * *
183283 AGACTTTCTCACC-TTAGTCTTCCTGTTAGCTTTGACCTTAGAGACTT-TTTCACTTTTAGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTT-ACCTTAAGTC
* * * * * *
183344 TGCCTGTCGACTTTGACCGTAGAGACTTCCTTACCTTTAGTCAGCTTGTCGGCTTTGACCTTGGA
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
* * * * * * **
183409 TA-TTTCTTGACCTTTAGTATGCTTGTC-GACTTTGACCCTGGAGACTTTATTACCTT-AGTC
66 GACTTCCTT-ACCTTTAGTCTGCCTGTCAG-CTTT-AACCTAGAGACTTCCTTACCTTAAGTC
* * * ** *
183469 TGCCTATCGGCTTTGACCTTGGAGACTTCCTTA-CTTCTAGTCTGCCTGTTAGCTTTGACATTGG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * *
183533 AGACTTTCTTAGCC-TCAGGTCTGCCTGTCGGCTTTAACCTTAAAGACTTAC-TACCTCAAGTC
65 AGACTTCCTTA-CCTTTA-GTCTGCCTGTCAGCTTTAACC-TAGAGACTTCCTTACCTTAAGTC
* * * * * * * ** * * * * *
183595 TACCTGTCAGCTTTGACCTTGGAAACTTCCTTACCCTCAAGTCTGCTTATTGGCTTTGACCCTAG
1 TGCCTATCGGCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGG
* * * * * ** *
183660 AGACTTCTTTGCCTTTAGTCTGCCTATCAGCTTTGATCTTAGAGACTT--TTCCACCTTTTGTT
65 AGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT-AACCTAGAGACTTCCTT--ACCTTAAGTC
183722 TGCCTATCGGCTTTGAC
1 TGCCTATCGGCTTTGAC
183739 ACAGGAGAAT
Statistics
Matches: 20911, Mismatches: 6274, Indels: 2511
0.70 0.21 0.08
Matches are distributed among these distances:
105 1 0.00
106 2 0.00
107 1 0.00
108 6 0.00
109 3 0.00
110 28 0.00
111 28 0.00
112 45 0.00
113 226 0.01
114 49 0.00
115 15 0.00
116 101 0.00
117 109 0.01
118 16 0.00
119 19 0.00
120 35 0.00
121 58 0.00
122 51 0.00
123 86 0.00
124 550 0.03
125 2981 0.14
126 6396 0.31
127 4198 0.20
128 2147 0.10
129 2648 0.13
130 1024 0.05
131 84 0.00
132 4 0.00
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (125 bp):
TGCCTATCGGCTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA
GACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCTAGAGACTTCCTTACCTTAAGTC
Found at i:162331 original size:170 final size:172
Alignment explanation
Indices: 162023--162333 Score: 387
Period size: 170 Copynumber: 1.8 Consensus size: 172
162013 ATCTGCTTTG
* * * * *
162023 ACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCGTCATTGACCTTGGAGACTTTCCTCACTTT
1 ACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGCCGGCATTGACCCTAGAGACTTTCCTCACATT
* * * ** *
162088 CTAAGTCTGCTTGTTGGCTTTGACCCTAAAGACTTTTTTACCATCAAGTCTACCTATCGACTTTA
66 CTAAGTCTACTTGTCGGCTTTGACCCCAAAGACTTCCTTACCATAAAGTCTACCTATCGACTTTA
162153 ACCCTAGAGACGTGCTTACGTCAAGTATGTCTGTCGAATTTA
131 ACCCTAGAGACGTGCTTACGTCAAGTATGTCTGTCGAATTTA
* * * * *
162195 ACCCTAGAGACTTTTTTACCTTTAGTTTGCCTGCCGGCTTTGACCCTAGAGAC-TTCGTTACCAT
1 ACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGCCGGCATTGACCCTAGAGACTTTCCTCA-CAT
* * * *
162259 T-TAA-TCTATTTGTCGGTTTTGACCCCAAAGACTTCCTTACCTTAAAGTCTGCCTATCGGA-TT
65 TCTAAGTCTACTTGTCGGCTTTGACCCCAAAGACTTCCTTACCATAAAGTCTACCTATC-GACTT
*
162321 TGACCCTAGAGAC
129 TAACCCTAGAGAC
162334 TTCTTTACTC
Statistics
Matches: 116, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 57 0.49
171 10 0.09
172 49 0.42
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (172 bp):
ACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGCCGGCATTGACCCTAGAGACTTTCCTCACATT
CTAAGTCTACTTGTCGGCTTTGACCCCAAAGACTTCCTTACCATAAAGTCTACCTATCGACTTTA
ACCCTAGAGACGTGCTTACGTCAAGTATGTCTGTCGAATTTA
Found at i:163050 original size:170 final size:170
Alignment explanation
Indices: 162696--163136 Score: 414
Period size: 170 Copynumber: 2.6 Consensus size: 170
162686 TACCTATCGC
* * ** * *
162696 CTTTGACGCTAGAGACTTCCTCACCATT-AGTCTGCCTATTGATTTTAACCGT-GAAGACTTCCC
1 CTTTGACACTAGAGACCTCCTCACC-TTCAGTCTGCCTATTGGCTTTAACCCTAG-AGACTTCCT
* * * ** * * ** * * * *
162759 CACCTTTATTCTGCTTATCAACTTT-AACTCTAGAGACTT-CTTTGCCTCAAGTCT-CCCTATCA
64 AACCATTAGTCTGCCAATCGACTTTGACCT-TAGAGACTTCCTTACCCTCAAGTTTGTCC-GTCG
* *
162821 GCTTTGACCATAGAGACTTTCTTACCCTTAAGTCTGCCCGTCGA
127 GCTTTAACCATAGAGACTTTCTTACCCTCAAGTCTGCCCGTCGA
** *
162865 CTTTGACTTTAGAGACCTCCTGACCTGT-AGTCTGCCTATCT-GCTTTAACCCTAGAGACTTCCT
1 CTTTGACACTAGAGACCTCCTCACCT-TCAGTCTGCCTAT-TGGCTTTAACCCTAGAGACTTCCT
* * *
162928 AACCTTTAGTTTGCCAATCGGCTTTGAGCC-TAGAGACTTCCTTACCCTCAAGTTTGTCCGTCGG
64 AACCATTAGTCTGCCAATCGACTTTGA-CCTTAGAGACTTCCTTACCCTCAAGTTTGTCCGTCGG
** * *
162992 CTTTAACCATAGAGAC-TTCTTTACCCTCAAGTCTGCCTTTTGG
128 CTTTAACCATAGAGACTTTC-TTACCCTCAAGTCTGCCCGTCGA
* ** *
163035 CTTTGACACTAGAGACTTCCTCACCTTCAGTCTGCCTATTGGCTTTGGCCCTAGAGACTTCCTCA
1 CTTTGACACTAGAGACCTCCTCACCTTCAGTCTGCCTATTGGCTTTAACCCTAGAGACTTCCTAA
* *
163100 CCATTAGTCTGCCTATCGATTTTGACCTTAGAGACTT
66 CCATTAGTCTGCCAATCGACTTTGACCTTAGAGACTT
163137 TTTTACTTTT
Statistics
Matches: 221, Mismatches: 40, Indels: 21
0.78 0.14 0.07
Matches are distributed among these distances:
168 1 0.00
169 83 0.38
170 134 0.61
171 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (170 bp):
CTTTGACACTAGAGACCTCCTCACCTTCAGTCTGCCTATTGGCTTTAACCCTAGAGACTTCCTAA
CCATTAGTCTGCCAATCGACTTTGACCTTAGAGACTTCCTTACCCTCAAGTTTGTCCGTCGGCTT
TAACCATAGAGACTTTCTTACCCTCAAGTCTGCCCGTCGA
Found at i:165232 original size:85 final size:84
Alignment explanation
Indices: 165061--165248 Score: 227
Period size: 85 Copynumber: 2.2 Consensus size: 84
165051 TTGGCTTTGG
* * * **
165061 CCTTGGAGATTTCCTTACCTCAGTTCTGCTTGTCAGCTTTGACCCTAAAGACTTCCTTATATCAA
1 CCTTGGAGACTTCTTTACCTCAGTTCTACTTGTCAGCTTTGACCCTAAAGACTTCCGCATATCAA
* * *
165126 GTCTGTTTGTCCACTTTAA
66 GTCTGCTAGTCAACTTTAA
* *
165145 CCTTGGAGACTTCTTTACGCTCAAGTT-TACTTGTCAGCTTTGATCCTAAAGACTTTCGCACTAT
1 CCTTGGAGACTTCTTTAC-CTC-AGTTCTACTTGTCAGCTTTGACCCTAAAGACTTCCGCA-TAT
* *
165209 -TAGTTTGCTAGTCAACTTTAA
63 CAAGTCTGCTAGTCAACTTTAA
165230 CCTTGGAGACTTCTTTACC
1 CCTTGGAGACTTCTTTACC
165249 ATTAGTGTGG
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
84 17 0.19
85 65 0.73
86 7 0.08
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (84 bp):
CCTTGGAGACTTCTTTACCTCAGTTCTACTTGTCAGCTTTGACCCTAAAGACTTCCGCATATCAA
GTCTGCTAGTCAACTTTAA
Found at i:166778 original size:42 final size:45
Alignment explanation
Indices: 166732--166843 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 45
166722 TTACCTATCT
* * *
166732 GCTTTGACCCTGGAGA-TTTCATTTCC-TTTT-GTCTATTTGTCG
1 GCTTTGACCCTGGAGACTTTCATTACCTTTTTGGTCGACTTGTCG
* * * *
166774 GCTTTAACCTTGGAGACTTTCCTTACCTTTTTGGTCGACTTGTTG
1 GCTTTGACCCTGGAGACTTTCATTACCTTTTTGGTCGACTTGTCG
*
166819 GCTTTGGCCCTGGAGACTTTC-TTAC
1 GCTTTGACCCTGGAGACTTTCATTAC
166844 ACCCAAGTCT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 14 0.25
43 8 0.14
44 8 0.14
45 27 0.47
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (45 bp):
GCTTTGACCCTGGAGACTTTCATTACCTTTTTGGTCGACTTGTCG
Found at i:166937 original size:42 final size:43
Alignment explanation
Indices: 166891--167055 Score: 122
Period size: 43 Copynumber: 3.9 Consensus size: 43
166881 GCTTATGTCG
166891 AGTCTGTTTGTCGGCTTTAACCCTAGAGACCTT-TTTA-CCGTT
1 AGTCTGTTTGTCGGCTTTAACCCTAGAGA-CTTCTTTAGCCGTT
*** * * * *
166933 AGTCTACCTATCGGCTTTGACCCTTGAGACTTCTTTAGCCTTT
1 AGTCTGTTTGTCGGCTTTAACCCTAGAGACTTCTTTAGCCGTT
* * * * * *
166976 ACTCTGTTTGTCAGCTTTGACACC-AGAGACTTCCTCA-CCTTT
1 AGTCTGTTTGTCGGCTTTAAC-CCTAGAGACTTCTTTAGCCGTT
* ** *
167018 AAATCTGCCTGTCGGTTTTAACCCTAGAGACTTCTTTA
1 -AGTCTGTTTGTCGGCTTTAACCCTAGAGACTTCTTTA
167056 CCCTCAAGTC
Statistics
Matches: 94, Mismatches: 24, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
41 3 0.03
42 34 0.36
43 55 0.59
44 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (43 bp):
AGTCTGTTTGTCGGCTTTAACCCTAGAGACTTCTTTAGCCGTT
Found at i:168216 original size:85 final size:84
Alignment explanation
Indices: 168073--168288 Score: 263
Period size: 85 Copynumber: 2.6 Consensus size: 84
168063 TTTTTAACTT
* * * * *
168073 TTAGTCTACCTGTTGTCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCTTGTTGGCTTTAAC
1 TTAGTCTACCAGTAGCCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACTTGTTGGCTTGAA-
*
168138 CTTGAAAAACTTCCTCAACC
65 CTTGAAAAACTTCCCCAACC
*
168158 TTAGTCTACCAGTAGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACTTGTTGGCTTGAAC
1 TTAGTCTACCAGTAGCCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACTTGTTGGCTTGAAC
* * * *
168223 TTTAGAGACTTCCCCATCC
66 TTGAAAAACTTCCCCAACC
* * * * *
168242 TTAGTCTACCTA-TCGCCTTTGACCCTAGAGACTTCCTCACCATTAGT
1 TTAGTCTACC-AGTAGCCTTTGACCTTGGAGACTTCCTTACCTTTAGT
168289 TTGCCTATCA
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
84 54 0.47
85 60 0.53
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (84 bp):
TTAGTCTACCAGTAGCCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTACTTGTTGGCTTGAAC
TTGAAAAACTTCCCCAACC
Found at i:168578 original size:129 final size:127
Alignment explanation
Indices: 168354--168584 Score: 277
Period size: 129 Copynumber: 1.8 Consensus size: 127
168344 TTAACATTGG
* *
168354 AGACTTCATTACCTCAAGTCTGCCTATAGGCTTTGCCCTAAAGACTTTTTTACCCTCAAGTCTGC
1 AGACTTCATTACCTCAAATCTGCCTATAGGCTTTGCCCTAAAGACTTCTTTACCCTCAAGTCTGC
* ** * * *
168419 CTATTGATTTTGACCTTGGACACTTCTTTACCCTCAAATCTATTTCTTGACTTTGACCTTGT
66 CTATTCACATTAACCTTGGACACCTATTTACCCTCAAATCTATTTCTTGACTTTGACCTTGT
* * * * * *
168481 AGACTTCCTTACCTTCAAATCTTCTTATTGGCTTTGACCTTAGAGACTTCTTTACCCTCAAGTCT
1 AGACTTCATTACC-TCAAATCTGCCTATAGGCTTTG-CCCTAAAGACTTCTTTACCCTCAAGTCT
*
168546 G-CT-TGTCAGCATTAACCTTGGAGACCTATTTACCCTCAA
64 GCCTAT-TCA-CATTAACCTTGGACACCTATTTACCCTCAA
168585 GTTTGCCTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
127 13 0.15
128 22 0.26
129 50 0.59
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (127 bp):
AGACTTCATTACCTCAAATCTGCCTATAGGCTTTGCCCTAAAGACTTCTTTACCCTCAAGTCTGC
CTATTCACATTAACCTTGGACACCTATTTACCCTCAAATCTATTTCTTGACTTTGACCTTGT
Found at i:170436 original size:83 final size:83
Alignment explanation
Indices: 170231--170437 Score: 220
Period size: 83 Copynumber: 2.5 Consensus size: 83
170221 ACTTTGACCT
* * *
170231 TAGAGACTTCCTTACCTTTAGTCTGCCTATCAACTTTAACTTTGAAGACTTCCTCATCCTTAGTC
1 TAGAGACTTCCTTACC-TTAGTCTGCCTATCAGCTTTGACTGTGAAGACTTCCTCATCCTTAGTC
** *
170296 TACCTATCGGCTTTGACAC
65 TACCTATAAGCTTTAACAC
* * * * * *
170315 TAGAGACTTCCTCACCATTAGTTTGCCTATCGGTTTTGACTGTGGAGACTTCC-CA-CCATTATT
1 TAGAGACTTCCTTACC-TTAGTCTGCCTATCAGCTTTGACTGTGAAGACTTCCTCATCC-TTAGT
* * *
170378 CTGCTTATAAGCTTTAACTC
64 CTACCTATAAGCTTTAACAC
*
170398 TAGAGACTTCCTTACCTTCAGTCTGCTTATCAGCTTTGAC
1 TAGAGACTTCCTTACCTT-AGTCTGCCTATCAGCTTTGAC
170438 CCTAGCAATT
Statistics
Matches: 100, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
82 4 0.04
83 52 0.52
84 44 0.44
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (83 bp):
TAGAGACTTCCTTACCTTAGTCTGCCTATCAGCTTTGACTGTGAAGACTTCCTCATCCTTAGTCT
ACCTATAAGCTTTAACAC
Found at i:173120 original size:619 final size:619
Alignment explanation
Indices: 172368--173585 Score: 1534
Period size: 619 Copynumber: 2.0 Consensus size: 619
172358 CTACCTGTTA
* *
172368 GCTTTGACCTTAGAGACTTTCTTACCTTTAGTCTACCTATCAGCTTTACCCTTGAAGACTTACTC
1 GCTTCGACCTTAGAGACTTTCTTACCTTTAGTCTACCTATCAGCTTTACCCTTAAAGACTTACTC
* * * * * * *
172433 ATCCTTAGTCTACTTGTCGACTTTGACCTTAGAGATTTCCTCACCCTTAGTCTGCTTGTCGACTT
66 AACCTTAGTCTACCTGTAGACTTTGACCTTAGAGACTTCCTCACCATTAGTCTGCCTGTAGACTT
* * *
172498 TGACCGTGGAGAC-TTCTCCACCTTTAGTCTGC-TTGTTAGC-TTCAAATCTGGAGACTTCCTTA
131 TGACCGTAGAGACGTTC-CCACCTTTAGTCTACATT-TTAGCATT-AAATCTAGAGACTTCCTTA
* * * * *
172560 CCTCAAGTCTTCCTATTTG-TTTTGACCTTGGAGACTTCCTTAACTTAGATCTGCTTGTCGGCTT
193 CCTCAAGTCTGCCTA-TCGACTTTGACCTTGGAGACTTCCTTAACTGAGATCTACTTGTCGGCTT
* * * *
172624 TGACCTTGGAGACTTCCTTACATCAAGTCTGCTTGTCAGCGTTGACCTTGGAGACTTCTTTATGC
257 TGACCCTAGAGACTTCCTTACATCAAGTCTGCTTGTCAGCGTTAACCTTGGAGACTTCCTTATGC
** * *
172689 TGAAGTCTTTCTATCGGCTT-TAACCCTAG-AGACTTCCGCACGATTAGTCTGCCTATCGACTTT
322 TGAAGTCTGCCTATCGGCTTCGAA--CTAGAAGACTTCCGCACCATTAGTCTGCCTATCGACTTT
*
172752 GACCCT-AAAGACTTCTTTACCAATATTG-CAG-CTGTCGACTTTGACCTTAGAGACTTCCTTAC
385 GACCCTGAAA-ACTTCTTTACC--TATTGTCAGTCTGTCCACTTTGACCTTAGAGACTTCCTTA-
* * *
172814 CT-CAAGTCTGCCTGCTAG-CTTTGAACTTGAAGGCTTTCTTACCCTCAAATTTCCCTATCGGCT
446 CTACAAGTCTGCCTG-TAGACTTTGAACTTGAAGACTTTCTTACCCTCAAATCTCCCTATCAGCT
* * ** *
172877 TTGATCTTGGAAACTTCCTGACCTTTATTCTACCTGTC-AGCTTTGACCTTCGAGTC-TTCTTTA
510 TTGATCTTGGAAACTTCCTAACCTTTATTCTACCTATCGA-CTTTGACCTTAAAGACTTTC-TTA
*
172940 CCTTTAGTTTGCCTATTGGCTTTGACCCTAGAGATGTCTGCCTATCG
573 CCTTTAGTTTGACTATTGGCTTTGACCCTAGAGATGTCTGCCTATCG
* *
172987 GCTTCGACCTTGGAGAC-TTCTTTACCTTTAGTCTA-CTAATCAGCTTTAACCC-TAAAGACTTC
1 GCTTCGACCTTAGAGACTTTC-TTACCTTTAGTCTACCT-ATCAGCTTT-ACCCTTAAAGACTTA
** * *
173049 CTCAACCTTAGTCTACCTGTAGGGTTTGACCTTGGAGACTTCCTCACTATTAGTCTGCCTGTTAG
63 CTCAACCTTAGTCTACCTGTAGACTTTGACCTTAGAGACTTCCTCACCATTAGTCTGCCTG-TAG
**
173114 -CTTTGACCGTAGAGACGTTCCCACCTTTAGTCTACATTTTAGCATTAGCTCTAGAGACTTCCTT
127 ACTTTGACCGTAGAGACGTTCCCACCTTTAGTCTACATTTTAGCATTAAATCTAGAGACTTCCTT
* * *
173178 ACCTCAAGTCTGCTTATCGACTTTGACCTTGGAGACTTCCTTACCTGAGGTCTACTTGTCGGCTT
192 ACCTCAAGTCTGCCTATCGACTTTGACCTTGGAGACTTCCTTAACTGAGATCTACTTGTCGGCTT
* * *
173243 TGACCCTAGAGACTTCTTTACATTAAGTCTGCTTGTCAGCTTTAACCTTGGAGACTTCCTTATGC
257 TGACCCTAGAGACTTCCTTACATCAAGTCTGCTTGTCAGCGTTAACCTTGGAGACTTCCTTATGC
* * * * *
173308 TTAAGTCTGCCTATCGGCTTCGAACTTGAAGACTTTCGCACCATTAGTCTGCTTGTCGACTTTGA
322 TGAAGTCTGCCTATCGGCTTCGAACTAGAAGACTTCCGCACCATTAGTCTGCCTATCGACTTTGA
* * * ** *
173373 CCTTGGAAACTTCTTTACCTTTTGTGTGTCTGTCCACTTTGACCTTAGAGACTTCCTTACTACAG
387 CCCTGAAAACTTCTTTACCTATTGTCAGTCTGTCCACTTTGACCTTAGAGACTTCCTTACTACAA
* * * * * *
173438 GTCTGCCTGTCGACTTTGAACTTGGATACTTTCTTACCCTCAAGTCTGCCTTTCAGCTTTGATCT
452 GTCTGCCTGTAGACTTTGAACTTGAAGACTTTCTTACCCTCAAATCTCCCTATCAGCTTTGATCT
* * * *
173503 TGGAGACTTCCTAACCTTTATTCTGCTTATCGACTTTGACCTTAAAGACTTTCTTACTTTTAGTT
517 TGGAAACTTCCTAACCTTTATTCTACCTATCGACTTTGACCTTAAAGACTTTCTTACCTTTAGTT
173568 TGACTATTGGCTTTGACC
582 TGACTATTGGCTTTGACC
173586 TTGGAGACCT
Statistics
Matches: 512, Mismatches: 70, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
617 4 0.01
618 15 0.03
619 472 0.92
620 21 0.04
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (619 bp):
GCTTCGACCTTAGAGACTTTCTTACCTTTAGTCTACCTATCAGCTTTACCCTTAAAGACTTACTC
AACCTTAGTCTACCTGTAGACTTTGACCTTAGAGACTTCCTCACCATTAGTCTGCCTGTAGACTT
TGACCGTAGAGACGTTCCCACCTTTAGTCTACATTTTAGCATTAAATCTAGAGACTTCCTTACCT
CAAGTCTGCCTATCGACTTTGACCTTGGAGACTTCCTTAACTGAGATCTACTTGTCGGCTTTGAC
CCTAGAGACTTCCTTACATCAAGTCTGCTTGTCAGCGTTAACCTTGGAGACTTCCTTATGCTGAA
GTCTGCCTATCGGCTTCGAACTAGAAGACTTCCGCACCATTAGTCTGCCTATCGACTTTGACCCT
GAAAACTTCTTTACCTATTGTCAGTCTGTCCACTTTGACCTTAGAGACTTCCTTACTACAAGTCT
GCCTGTAGACTTTGAACTTGAAGACTTTCTTACCCTCAAATCTCCCTATCAGCTTTGATCTTGGA
AACTTCCTAACCTTTATTCTACCTATCGACTTTGACCTTAAAGACTTTCTTACCTTTAGTTTGAC
TATTGGCTTTGACCCTAGAGATGTCTGCCTATCG
Found at i:173415 original size:169 final size:169
Alignment explanation
Indices: 173184--173545 Score: 394
Period size: 169 Copynumber: 2.1 Consensus size: 169
173174 CCTTACCTCA
* **
173184 AGTCTGCTTATCGACTTTGACCTTGGAGACTTCCTTACCTGAGGTCTACTTGTCGGCTTTGACCC
1 AGTCTGCTTATCGACTTTGACCTTGGAAACTTCCTTACCTGAGGTCTACTTGTCCACTTTGACCC
* * ** *
173249 TAGAGACTTCTTTACATTA-A-GTCTGCTTGTC-AGCTTT-AACCTTGGAGACTTCCTTATGCTT
66 TAGAGACTTCCTTAC--TACAGGTCTGCCTGTCGA-CTTTGAA-CTTGGAGACTTCCTTACCCTC
* * *
173310 AAGTCTGCCTATCGGCTTCGAACTTGAAGACTTTCGCACCATT
127 AAGTCTGCCTATCAGCTTCGAACTTGAAGACTTCCGAACCATT
* * ** *
173353 AGTCTGCTTGTCGACTTTGACCTTGGAAACTTCTTTACCTTTTGTGTGT-C-TGTCCACTTTGAC
1 AGTCTGCTTATCGACTTTGACCTTGGAAACTTCCTTACC-TGAG-GTCTACTTGTCCACTTTGAC
* * *
173416 CTTAGAGACTTCCTTACTACAGGTCTGCCTGTCGACTTTGAACTTGGATACTTTCTTACCCTCAA
64 CCTAGAGACTTCCTTACTACAGGTCTGCCTGTCGACTTTGAACTTGGAGACTTCCTTACCCTCAA
* * * * * *
173481 GTCTGCCTTTCAGCTTTGATCTTGGAGACTTCCTAACCTTT
129 GTCTGCCTATCAGCTTCGAACTTGAAGACTTCCGAACCATT
*
173522 ATTCTGCTTATCGACTTTGACCTT
1 AGTCTGCTTATCGACTTTGACCTT
173546 AAAGACTTTC
Statistics
Matches: 160, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
167 2 0.01
168 1 0.01
169 148 0.93
170 6 0.04
171 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (169 bp):
AGTCTGCTTATCGACTTTGACCTTGGAAACTTCCTTACCTGAGGTCTACTTGTCCACTTTGACCC
TAGAGACTTCCTTACTACAGGTCTGCCTGTCGACTTTGAACTTGGAGACTTCCTTACCCTCAAGT
CTGCCTATCAGCTTCGAACTTGAAGACTTCCGAACCATT
Found at i:173484 original size:127 final size:126
Alignment explanation
Indices: 173165--173559 Score: 340
Period size: 127 Copynumber: 3.1 Consensus size: 126
173155 GCATTAGCTC
* * * *
173165 TAGAGACTTCCTTACCT-CAAGTCTGCTTATCGACTTTGACCTTGGAGACTTCCTTA-CCTGAGG
1 TAGAGACTTCCTTACCTAC-AGTCTGCCTATCGACTTTGAACTTGGAGACTTTCTTACCCT-AAG
* * * * * ** *
173228 TCTACTTGTCGGCTTTGACCCTAGAGACTTCTTTACATTAAGTCTGCTTGT-CAGCTTTAACCT
64 TCTGCTTGTCGACTTTGACCTTGGAGACTTCTTTACCTTTTGTCTGCTTGTCCA-CTTTGACCT
* * * * * ** * *
173291 TGGAGACTTCCTTATGCTTA-AGTCTGCCTATCGGCTTCGAACTTGAAGACTTTCGCACCATTAG
1 TAGAGACTTCCTTA--CCTACAGTCTGCCTATCGACTTTGAACTTGGAGACTTTCTTACCCTAAG
* *
173355 TCTGCTTGTCGACTTTGACCTTGGAAACTTCTTTACCTTTTGTGTG-TCTGTCCACTTTGACCT
64 TCTGCTTGTCGACTTTGACCTTGGAGACTTCTTTACCTTTTGTCTGCT-TGTCCACTTTGACCT
* *
173418 TAGAGACTTCCTTA-CTACAGGTCTGCCTGTCGACTTTGAACTTGGATACTTTCTTACCCTCAAG
1 TAGAGACTTCCTTACCTACA-GTCTGCCTATCGACTTTGAACTTGGAGACTTTCTTACCCT-AAG
* * * * *
173482 TCTGCCTT-TC-AGCTTTGATCTTGGAGACTTCCTAACCTTTAT-TCTGCTTATCGACTTTGACC
64 TCTG-CTTGTCGA-CTTTGACCTTGGAGACTTCTTTACCTTT-TGTCTGCTTGTCCACTTTGACC
173544 T
126 T
* *
173545 TAAAGACTTTCTTAC
1 TAGAGACTTCCTTAC
173560 TTTTAGTTTG
Statistics
Matches: 212, Mismatches: 43, Indels: 26
0.75 0.15 0.09
Matches are distributed among these distances:
124 2 0.01
125 1 0.00
126 47 0.22
127 151 0.71
128 11 0.05
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (126 bp):
TAGAGACTTCCTTACCTACAGTCTGCCTATCGACTTTGAACTTGGAGACTTTCTTACCCTAAGTC
TGCTTGTCGACTTTGACCTTGGAGACTTCTTTACCTTTTGTCTGCTTGTCCACTTTGACCT
Found at i:174555 original size:254 final size:255
Alignment explanation
Indices: 174204--174747 Score: 718
Period size: 254 Copynumber: 2.1 Consensus size: 255
174194 AGTCTACCTA
* * * * * * * *
174204 TCGGCTTTGACCCTAGAGACTTCCTCACCATTAGTCTGCCTGTTAGCTTTGACTGTGGAGACTTC
1 TCGGCTTTGACCTTTGAGAATTCCTTACCTTTAGTCTGCCTATGAGCTTTGACTGTGGACACTTC
* * * *
174269 CCCAACTTTAGTCTGCTTGTTAGCTTTAACTCTAAAGACTTCCTTACCTTAAGTTTGCCTATCGA
66 CCCAACCTTAGTCTGCTTGTCAACTTTAACTCTAAAGACTTCCTTACCTTAAGTTCGCCTATCGA
* *
174334 CTTTGACCCTAGAGACTTTCCTAACCTTCTTAGTCTACCTGTCAGCTTTGATCCTACA-ATTTCT
131 CTTTGACCCTAGAGACTTTCCTAACCTTCTTAGTCTACCTATCAGCTTTGACCCTACAGATTTCT
* * * * * * *
174398 TAACTTTTAGTGTGCCTATCGATTTTGACCTTAGAGACTTTTTGACTTTTTGTTTGCCTG
196 TAACATTTAGTGTACCTATCGACTTTGACCTTAGAGACTTTCTAACTTTTAGTTTGCCTC
*
174458 TCGGCTTTGACCTTTGAGAATTCCTTACCTTTAGTTTGCCTATCGA-CTTTGA-TCGTGGACACT
1 TCGGCTTTGACCTTTGAGAATTCCTTACCTTTAGTCTGCCTAT-GAGCTTTGACT-GTGGACACT
* * **
174521 TCCCCACCCTTAGTCTGTTTGTCAACTTTAACTCTCGAGACTTCCTTACCTTAAGTTCGCCTATC
64 TCCCCAACCTTAGTCTGCTTGTCAACTTTAACTCTAAAGACTTCCTTACCTTAAGTTCGCCTATC
* * *
174586 GGCTTTGACCCTAGAGATTTTCCTAACCTTCTTAGTCTACCTATCGGCTTTGACCCTACAGATTT
129 GACTTTGACCCTAGAGACTTTCCTAACCTTCTTAGTCTACCTATCAGCTTTGACCCTACAGATTT
* * * *
174651 CTTAACATTTAGTTTACCTGTCGGCTTTGACCTTGGAGACTTTCTAACTTTTAGTTTGCCTC
194 CTTAACATTTAGTGTACCTATCGACTTTGACCTTAGAGACTTTCTAACTTTTAGTTTGCCTC
* *
174713 TTGGCTTTGA-CTCTTGAGAATTTCTTACCTTTAGT
1 TCGGCTTTGACCT-TTGAGAATTCCTTACCTTTAGT
174748 GTGGCTGTTC
Statistics
Matches: 251, Mismatches: 35, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
253 1 0.00
254 164 0.65
255 86 0.34
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.40
Consensus pattern (255 bp):
TCGGCTTTGACCTTTGAGAATTCCTTACCTTTAGTCTGCCTATGAGCTTTGACTGTGGACACTTC
CCCAACCTTAGTCTGCTTGTCAACTTTAACTCTAAAGACTTCCTTACCTTAAGTTCGCCTATCGA
CTTTGACCCTAGAGACTTTCCTAACCTTCTTAGTCTACCTATCAGCTTTGACCCTACAGATTTCT
TAACATTTAGTGTACCTATCGACTTTGACCTTAGAGACTTTCTAACTTTTAGTTTGCCTC
Found at i:175656 original size:86 final size:86
Alignment explanation
Indices: 175435--175645 Score: 210
Period size: 86 Copynumber: 2.5 Consensus size: 86
175425 AGTTTGTCTG
* * ** * * * * *
175435 TCAACTTTAACCCTAGAGGCTTCTTTA-CCTTTAGTCTACTTGTTAGTTTTGAA-GTTGGAGACT
1 TCAACTTTAACCCTAGAGACTTCGTTACCCTCAAGTCTGCCTGTCAGCTTT-AACCTTGGAGACT
* * *
175498 TCTTTACCCTCTAGTCTGTTTG
65 TCCTTACCCTCAAGTCTGTTTA
** * *
175520 TCGGCTTTGACCCTAGAGACTTCGTTACCTTCAAGTCTGCCTGTCAGCTTTAACCTTGGAGACTT
1 TCAACTTTAACCCTAGAGACTTCGTTACCCTCAAGTCTGCCTGTCAGCTTTAACCTTGGAGACTT
175585 CCTTACCCTCAAGTCTGTTTA
66 CCTTACCCTCAAGTCTGTTTA
* ** * *
175606 TCAACTTTAACCTTAGAGACTTTTTTTCCCTCAATTCTGC
1 TCAACTTTAACCCTAGAGACTTCGTTACCCTCAAGTCTGC
175646 TTTTTGGCTT
Statistics
Matches: 99, Mismatches: 25, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
85 24 0.24
86 75 0.76
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (86 bp):
TCAACTTTAACCCTAGAGACTTCGTTACCCTCAAGTCTGCCTGTCAGCTTTAACCTTGGAGACTT
CCTTACCCTCAAGTCTGTTTA
Found at i:175668 original size:86 final size:86
Alignment explanation
Indices: 175492--175673 Score: 184
Period size: 86 Copynumber: 2.1 Consensus size: 86
175482 TTTGAAGTTG
* * * ** * *
175492 GAGACTTCTTTACCCTCTAGTCTGTTTGTCGGCTTTGACCCTAGAGACTTCGTTACCTTCAAGTC
1 GAGACTTCCTTACCCTCAAGTCTGTTTATCAACTTTAACCCTAGAGACTTCGTTACCCTCAAGTC
* *
175557 TGCCTGTCAGCTTTAACCTTG
66 TGCCTGTCAGCTTTAACCATA
* ** * *
175578 GAGACTTCCTTACCCTCAAGTCTGTTTATCAACTTTAACCTTAGAGACTTTTTTTCCCTCAATTC
1 GAGACTTCCTTACCCTCAAGTCTGTTTATCAACTTTAACCCTAGAGACTTCGTTACCCTCAAGTC
* * ** *
175643 TGCTTTTTGGCTTTGACCATA
66 TGCCTGTCAGCTTTAACCATA
*
175664 GAGACGTCCT
1 GAGACTTCCT
175674 CACCTTTAGT
Statistics
Matches: 76, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
86 76 1.00
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (86 bp):
GAGACTTCCTTACCCTCAAGTCTGTTTATCAACTTTAACCCTAGAGACTTCGTTACCCTCAAGTC
TGCCTGTCAGCTTTAACCATA
Found at i:175781 original size:83 final size:83
Alignment explanation
Indices: 175694--175906 Score: 239
Period size: 83 Copynumber: 2.6 Consensus size: 83
175684 CTACCTATCA
* * * * *
175694 GCTTTGACCTTGGAGACTTCCTCACCTTTAGTCTACCTATCGGCTTT-GTCTTAGAGACTTTCTG
1 GCTTTTACCTTGGAGACTTCCTTACCTTTAGTCTACCTATCGACTTTGGCCCTAGAGACTTT-TG
* *
175758 ATTTTTAGTTTGCCTGTTG
65 ACTTTTAGTCTGCCTGTTG
** * * * * * *
175777 GCTTTTACCTTAAAAACTTCTTTAGCTTTAGTTTGCCTATCGACTTTGGCCCTAGAGACTTTTTA
1 GCTTTTACCTTGGAGACTTCCTTACCTTTAGTCTACCTATCGACTTTGGCCCTAGAGACTTTTGA
*
175842 CTTTTAGTCTGTCTGTTG
66 CTTTTAGTCTGCCTGTTG
* * *
175860 GGTTTTACCTTGGAGACTTCCTTACCTTTTGTCTACCTATCAACTTT
1 GCTTTTACCTTGGAGACTTCCTTACCTTTAGTCTACCTATCGACTTT
175907 AACCATGGAG
Statistics
Matches: 103, Mismatches: 26, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
83 91 0.88
84 12 0.12
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.45
Consensus pattern (83 bp):
GCTTTTACCTTGGAGACTTCCTTACCTTTAGTCTACCTATCGACTTTGGCCCTAGAGACTTTTGA
CTTTTAGTCTGCCTGTTG
Found at i:176580 original size:86 final size:83
Alignment explanation
Indices: 176407--176648 Score: 207
Period size: 86 Copynumber: 2.8 Consensus size: 83
176397 TTTAGCTTGT
* * * * * * * *
176407 CTGTCGGCTTTAACCTTAGAGACTTCTTTACCTTTTAGTCTGTTTGTCGGCTTTGATCTTGGAAA
1 CTGTCGGCTTTAACCTT-GAAACTTCCTTACCCTTTAGTCTGCTTGTCGGCTTT-AACCTAGAGA
* *
176472 CTTCTTTTGCATAAAGTTTGC
64 CTT-TTTTCCATAAAGTATGC
**
176493 CTGTCGGCTTTAACCTTGGAAACTTCCTTACCCTCGAGTCTGCTTGTCGGCTTTAACCTCAGAGA
1 CTGTCGGCTTTAACCTT-GAAACTTCCTTACCCTTTAGTCTGCTTGTCGGCTTTAACCT-AGAGA
* *
176558 CTTTTTTACCCTCAAGTATGC
64 CTTTTTT-CCATAAAGTATGC
* * * * * * * *
176579 CTTTTGGCTTCAACCCTAAAGACTTCCTTA-CCTTTAGTTTGCTTATCGGCTTTGAGCCTAGAGA
1 CTGTCGGCTTTAACCTTGAA-ACTTCCTTACCCTTTAGTCTGCTTGTCGGCTTT-AACCTAGAGA
176643 CTTTTT
64 CTTTTT
176649 CACATTTAGT
Statistics
Matches: 127, Mismatches: 25, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
85 39 0.31
86 88 0.69
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.40
Consensus pattern (83 bp):
CTGTCGGCTTTAACCTTGAAACTTCCTTACCCTTTAGTCTGCTTGTCGGCTTTAACCTAGAGACT
TTTTTCCATAAAGTATGC
Found at i:176633 original size:256 final size:257
Alignment explanation
Indices: 176228--176700 Score: 585
Period size: 256 Copynumber: 1.8 Consensus size: 257
176218 CCTTACCTTT
* ** * * * *
176228 AGTTTGCCTGTCGGCTTTGACCTTGGACATTTTCCTTACCTTCTTAGTTTGCTTGTTGGCTTTAA
1 AGTTTGCCTGTCGGCTTTAACCTTGGACAACTTCCTTACCCTCTGAGTCTGCTTGTCGGCTTTAA
* * * * *
176293 CCCTAAAGACTTTCTTACCCTAAAGTCTACCTATTGGCTTTAACCCTAGAGACTTGCTTACGTCA
66 CCCTAAAGACTTTCTTACCCTAAAGTATACCTATTGGCTTCAACCCTAAAGACTTCCTTACCTCA
* * * * * **
176358 AGTCTGTTTATCAGCTTTGATCTTGGAGACTTCCTCACCTTTAG-CTTGTCTGTCGGCTTTAACC
131 AGTCTGCTTATCAGCTTTGAGCCTAGAGACTTCCTCACATTTAGTC-TACCTGTCGGCTTTAACC
* * *
176422 TTAGAGACTTCTTTACCTTTTAGTCTGTTTGTCGGCTTTGATCTTGGAAACTTCTTTTGCATAA
195 CTAGAGACTT-TCTAACTTTTAGTCTGTTTGTCGGCTTTGATCTTGGAAACTTCTTTTGCATAA
176486 AGTTTGCCTGTCGGCTTTAACCTTGGA-AACTTCCTTACCCTC-GAGTCTGCTTGTCGGCTTTAA
1 AGTTTGCCTGTCGGCTTTAACCTTGGACAACTTCCTTACCCTCTGAGTCTGCTTGTCGGCTTTAA
* * * * * *
176549 -CCTCAGAGACTTTTTTACCCTCAAGTATGCCTTTTGGCTTCAACCCTAAAGACTTCCTTACCTT
66 CCCT-AAAGACTTTCTTACCCTAAAGTATACCTATTGGCTTCAACCCTAAAGACTTCCTTACCTC
* * * ** *
176613 TAGTTTGCTTATCGGCTTTGAGCCTAGAGACTTTTTCACATTTAGTCTACCTGTCGGCTTTGACC
130 AAGTCTGCTTATCAGCTTTGAGCCTAGAGACTTCCTCACATTTAGTCTACCTGTCGGCTTTAACC
176678 CTAGAGACTTTCTAACTTTTAGT
195 CTAGAGACTTTCTAACTTTTAGT
176701 TTGCCTATTA
Statistics
Matches: 179, Mismatches: 34, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
255 14 0.08
256 126 0.70
257 13 0.07
258 26 0.15
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.40
Consensus pattern (257 bp):
AGTTTGCCTGTCGGCTTTAACCTTGGACAACTTCCTTACCCTCTGAGTCTGCTTGTCGGCTTTAA
CCCTAAAGACTTTCTTACCCTAAAGTATACCTATTGGCTTCAACCCTAAAGACTTCCTTACCTCA
AGTCTGCTTATCAGCTTTGAGCCTAGAGACTTCCTCACATTTAGTCTACCTGTCGGCTTTAACCC
TAGAGACTTTCTAACTTTTAGTCTGTTTGTCGGCTTTGATCTTGGAAACTTCTTTTGCATAA
Found at i:178738 original size:209 final size:210
Alignment explanation
Indices: 178355--178833 Score: 484
Period size: 209 Copynumber: 2.3 Consensus size: 210
178345 TGCCTATCTG
* *
178355 CTTTGACCCTAGAAACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTCA
1 CTTTGACCCTAAAAACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCTTAGAGACTTCCTCA
* * * * * *
178420 CCTTTAGTCTACCTATTGGCTTTAACCTTAGAGACTTCCTCACCTTTAGCTTGCCTGTCGACTTT
66 CCTTTAGTATACCTATCGACTTTAACCTTAGAAACTTCCTCACCTTTAGCTTACCTATCGACTTT
* * * * * ** * * * * * ***
178485 GGCTTTGAAGACTTTTTGACTTTTAGTCTACTTGTTGGCTTTGACCTTGAAGACTTCTTTAGCTT
131 GCCCTAGAAGACTTCTTCACCATTACTCTACCTGTCGACTTTGACCATGAAGACTTCCCCAGCTT
178550 TAGTTTGCTTGTCGA
196 TAGTTTGCTTGTCGA
* * * * *
178565 CTTTGACCCTAAAAACTT-TTTACTTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCCTTA
1 CTTTGACCCTAAAAACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCTTAGAGACTTCCTCA
* * * *
178629 CCTTTAGTATGCCTGTCGACTTTAACCTTGGAAACTTCTTCATCC-TTAG-TCTACCTATCGACT
66 CCTTTAGTATACCTATCGACTTTAACCTTAGAAACTTCCTCA-CCTTTAGCT-TACCTATCGACT
* *
178692 TTGACCCTAG-AGACTTCTTCACCATTACTCTGCCTGTCGACTTTGACCATGAAGACTTCCCCAT
129 TTG-CCCTAGAAGACTTCTTCACCATTACTCTACCTGTCGACTTTGACCATGAAGACTTCCCCAG
178756 CTTTAGTTTGCTTGTC-A
193 CTTTAGTTTGCTTGTCGA
* * * * * * * * *
178773 GCTTTAACTCTAGAGACTTCCTTACC-TCATGTCTGCCTTTCGGCTTTGACCCTAAAGACTT
1 -CTTTGACCCTAAAAACTTCCTTACCTTTA-GTCTGCCTATCAGCTTTGACCTTAGAGACTT
178834 TCCTAACTTT
Statistics
Matches: 218, Mismatches: 45, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
208 2 0.01
209 163 0.75
210 53 0.24
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (210 bp):
CTTTGACCCTAAAAACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCTTAGAGACTTCCTCA
CCTTTAGTATACCTATCGACTTTAACCTTAGAAACTTCCTCACCTTTAGCTTACCTATCGACTTT
GCCCTAGAAGACTTCTTCACCATTACTCTACCTGTCGACTTTGACCATGAAGACTTCCCCAGCTT
TAGTTTGCTTGTCGA
Found at i:180363 original size:85 final size:85
Alignment explanation
Indices: 180241--180475 Score: 224
Period size: 85 Copynumber: 2.8 Consensus size: 85
180231 AGTCTACTTA
* * * * * *
180241 TCGATTTTGACTCTTGAGACTTTCTTACCCTCAAGTCTACCTGTCGACTTTGACCCTAGAGACTT
1 TCGACTTTGACCCTAGAGACTTTCTTAACCTCAAGTCTACCTATAGACTTTGACCCTAGAGACTT
180306 TCTTTACCTTTAATTTGCCCG
66 TC-TTACCTTTAATTTGCCCG
** * *
180327 TCGACTTTGACCCTAGAGAC-TTCTTAACCTTTAGTCTGCCTATATACTTTGACCCTAGAGACTT
1 TCGACTTTGACCCTAGAGACTTTCTTAACCTCAAGTCTACCTATAGACTTTGACCCTAGAGACTT
* * *
180391 TCTTACCTTTAGTCTGCCTG
66 TCTTACCTTTAATTTGCCCG
* * * * * * * * *
180411 TCGGCTTTAACCTTGGAGA-TTTCCTTACCCTCAAGTCTGCC-ATTTGGCTTTGACCTTAGAGAC
1 TCGACTTTGACCCTAGAGACTTT-CTTAACCTCAAGTCTACCTA-TAGACTTTGACCCTAGAGAC
180474 TT
64 TT
180476 CCTCACTTTC
Statistics
Matches: 122, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
84 33 0.27
85 72 0.59
86 17 0.14
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.38
Consensus pattern (85 bp):
TCGACTTTGACCCTAGAGACTTTCTTAACCTCAAGTCTACCTATAGACTTTGACCCTAGAGACTT
TCTTACCTTTAATTTGCCCG
Found at i:180560 original size:169 final size:168
Alignment explanation
Indices: 179994--183502 Score: 799
Period size: 170 Copynumber: 20.6 Consensus size: 168
179984 TGTTTGTCGG
* * * *
179994 CTTTGACCCTAGAGACTTTCT-ACTTTTAGTCTGCTTGTCGGCTTTGACCTTCGAGACTTTCTTA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAACC-TAGAGACTTTCTTA
* * * * * * *
180058 CCTTGAGTCTACTTGTCGGCTTTAACCTTGGAGACTTCCTCATCCT-TAGTCTACCTATCGCCTT
65 CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGACTT
* *
180122 TGACCCTAGAGACTTCCTCATCATTAGTC-AGCCTATCGA
130 TGACCCTAGAGACTTCCTCACCTTTAGTCTA-CCTATCGA
* * * * * *
180161 CTTTGATCGT-GAAGACTTCCCCACCTTTAGTTTGCTTGTCAGCTTTAACTCTAGAGACTTCCTT
1 CTTTGACCCTAG-AGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAAC-CTAGAGACTTTCTT
** * ** * * *
180225 ACCTCAAGTCTACTTATCGATTTTGACTCTT-GAGACTTTCTTACCCTCAAGTCTACCTGTCGAC
64 ACCTTTAGTCTACCTATCGGCTTTAAC-CTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGAC
* * * * * **
180289 TTTGACCCTAGAGACTTTCTTTACCTTTAATTTGCCCGTCGA
128 TTTGACCCTAGAGAC-TTCCTCACCTTTAGTCTACCTATCGA
* * * * *** *
180331 CTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTATATACTTTGACCCTAGAGACTTTCTTA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTT-AACCTAGAGACTTTCTTA
* * * * * *
180396 CCTTTAGTCTGCCTGTCGGCTTTAACCTTGGAGATTTCCTTACCCTCAAGTCTGCC-ATTTGGCT
65 CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTA-TCGACT
*
180460 TTGACCTTAGAGACTTCCTCA-CTTTCAGTCTACCTATCGA
129 TTGACCCTAGAGACTTCCTCACCTTT-AGTCTACCTATCGA
* * * *
180500 CTTTAACCCTAGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTTCTAA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAACC-TAGAGACTTTCTTA
* * * * ** * *
180565 CTTTTAGTCTGCCTATTGGCTTTGACCTTGGAGACTTCCTTA-CCTTTAGTCTGCCTGTC-AGCT
65 CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGA-CT
* * * * * * * * * * * *
180628 TTAACCAT-GAGGCTT-TTTACTTTTAGGCTGCTTGTTGG
129 TTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * *
180666 CTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTAACCTTAGAGACTTCCTCA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAACC-TAGAGACTTTCTTA
* * * * * * * * * * * *
180731 TCC-TTAGTCTACTTATCGCCTTTGACATTAGAGACTTCCTCACCAT-TAGTTTGCCTGTCAACT
65 -CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGACT
* * * * * * *
180794 TTGACCGT-GAAGACTTCCCCACTTTTAGTCTGCTTGT-TA
129 TTGACCCTAG-AGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * ** * * * * *
180833 TCTTTAACTCTGGAGACTTCCTTACCTCAAGTATGCCTATCAGCTTTGACCCTAGAGACTTTCTT
1 -CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTT-AACCTAGAGACTTTCTT
** * * * * * * ** * * *
180898 ACCCTCAAGTCTACCTGTCAGCTTTGACCTTGAAAACTTGCTTTA-CCTTTAGTTTGCCAATCGG
64 A-CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTT-CCTTACCCTCAAGTCTACCTATC-G
* *
180962 A-TTTGTCCCTAGAGACTTCCTAACCTTTAGTCTACCTATCTG-
126 ACTTTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATC-GA
* ** * * * * *
181004 CTTTGACCCTAGAGACTTCCTTACCTTTTTTCTTCTTGTCGGCTTTAACCTTGGGGATTTTTCTA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAACC-TAGAGA-CTTTCTT
* * * * * * * * * *
181069 ATCTTCTTAATCTGCTTATTGGCTTTAACCTTAGAAACTTTCTTACCATGAAGTCTACCTATC-A
64 A-CCT-TTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGA
* * * * * * *
181133 GCTTTGACCCTGGACACTTGCTTA-CTTAAGTCTATCTGTCGA
127 -CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * * *
181175 CTTTGACCCTAGAGATTTCTTTACCTTTAGTCTGCCTGTGGGCTTTGACCCT-GAAGAC-TTCTT
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTT-AACCTAG-AGACTTTC-T
* * * * * * * * ** * * *
181238 TACCCTCTGGAGACTTCGT-TAC--ATTTAA-GTCTGCATGTCAACTTTGACCCTGGAGAATCCT
63 TA-CCT-T-TAGTCTACCTAT-CGGCTTTAACCT-TGGA-GACTTCCTT-ACCCT-CA-AGT-C-
* * * * * * * * *
181299 TACC-CTCAAGTCTG---CTTGTCGACTT--TAACCTTGGAGATTTCTTTACCCTCAAGTCTA
117 TACCTATCGACTTTGACCCTAG-AGACTTCCTCACCTT-TAG---TC--TA-CCT--A-TCGA
* * * * * **** * * *** * **
181356 CCTTTTG-GCTTTGA-CCCTAAAGACTTTCTTACCATCAATTTGCCTATCGGCTTTGTCCTTAGA
1 -C-TTTGACCCTAGAGACTTCCTCAC-CT-TTA--GTCTGCTTG--TC--GGCTTTAACC-TAGA
* * * * * * * * * * ** * *
181419 GCCTTCCTCACCTTTAGTCTGCCTATCGACTTTGACCTTTGAGAATT-TTTGA-CTTTTAGTTTG
55 GACTTTCTTACCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTT-ACCCTCAAGTCTA
* * * * *** *
181482 CCT-GCTGACTTTGACCTTAGAGACTTTCTCAGCTTTAGTCTGTTTATCGG
119 CCTATC-GACTTTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * * * * * *
181532 CTTTGACTCTAGAGACTTTCT-ACTTTTAGTCTGCTTGTTGACTTTTACGTTGGAGACTTCCTTA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAAC-CTAGAGACTTTCTTA
* * * * * ** * * * *
181596 CTTTTAGTTTGCCTGTCGGCTTTAACCTTGGAGACTTCCTCATTCT-TAGTCTACTTATTGGCTT
65 CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGACTT
* * * *
181660 TCACCCTAGAGACTTCTTCACCATTAGTCTACCTGTC-A
130 TGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
** * * * * * *
181698 GCTTTGACTGTGGAGACTTCC-CTACCATTAGTCTACTTGTCAGCTTCAACTTAGGAGACTTTCT
1 -CTTTGACCCTAGAGACTTCCTC-ACCTTTAGTCTGCTTGTCGGCTTTAACCTA-GAGACTTTCT
* * * * * * * * * * *
181762 TACC-TCACGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCCTAACCTTCTTAGTCTACTTGTC
63 TACCTTTA-GTCTACCTATCGGCTTTAACCTTGGAGAC-TTCCTTACCCTC-AAGTCTACCTATC
* * * ** * *
181826 GCCTTTGACCCTATAGATTTCCT-AAATATTAGTCTACCTGTCGG
125 GACTTTGACCCTAGAGACTTCCTCACCT-TTAGTCTACCTATCGA
* * * * * * ** * * *
181870 CTTTGACCCTTGAAAATTCCTTACCTTTAGTCTGCCTATCTACTTTGACTCTGGAGACTTCCTTA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAAC-CTAGAGACTTTCTTA
* * * * * ** * * *
181935 CCTTTAGTCT-TCTATCAGCTTTGACCTTGGAGACTTTCATTACCTTTTTAGTCTACTTGT-TAG
65 CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGAC-TTCCTTACC-CTCAAGTCTACCTATCGA-
* * * * * * *
181998 CTTTAACCCTAGAGACTTTCTTACCCTTAAGTCTGCTTGTCGA
127 CTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTACCTATCGA
* * * * ** * * * *
182041 TTTTGACCCTAGAGACTTGCTTACGTCAAGTCTGTTTGTCGGCTTTGACCTCGAAGGC-TTCTTT
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAACCTAG-AGACTTTC-TT
* * * * * * * *** * *
182105 ACCTTTAGTCTGCCTGTCAGCTTTGACCCTGGAGACATT-TTTACCCTCTAGTCTGTTTGTCGGC
64 ACCTTTAGTCTACCTATCGGCTTTAACCTTGGAGAC-TTCCTTACCCTCAAGTCTACCTATCGAC
* * * * * *
182169 TTTGACCCTAGAGACTTCCTTACCTTAAAGTTTTCCTGTCGG
128 TTTGACCCTAGAGACTTCCTCACCTT-TAGTCTACCTATCGA
* * * ** * *
182211 CTTTGACCTTAGACACTTCCTTACCCTCGAGTCTG-TCTATCGGCTTTAACCTTCGAGAC-TTCT
1 CTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCT-TGTCGGCTTTAACC-TAGAGACTTTC-
** * * ** * * ** * *
182274 TTACCCTCAAGTCTACCTTTTGGCTTTGCCCTTAGAGACTTCC-T-CTCTTTTAGTCTGCCTGTC
62 TTA-CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTAC-CCTCAAGTCTACCTATC
* ** * * * * *
182337 GACTTTGACCGTAGAGACTTTTTTACCTTTAGTCTGCTTGTCGG
125 GACTTTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * * * * *
182381 CTTTGACCTTGGAGACTTTCTGACTTTTATTCTGCTTGTTGGCTTTAACCTTGGAGAC-TTCTTT
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAACC-TAGAGACTTTC-TT
* * * * * * * * ** * * *
182445 ACCTTTAGTCTGCCTGTTGGCTTTGACCCTAGAGACTT-TTTA-CTTTTAGTCTACTTGTCAACT
64 ACCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGACT
* * * * *
182508 TTGACCTTAGAGACTTCCTCACCCTTAGTCTGCCTGTCGG
129 TTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * * * * ** * *
182548 GTTT-AACCTTGAAAACTTCCTCATCC-TTAGTCTACCTATCACCTTTGACCCTAGAGACTTCCT
1 CTTTGACCCTAG-AGACTTCCTCA-CCTTTAGTCTGCTTGTCGGCTTT-AACCTAGAGACTTTCT
* * * * * * ** * *
182611 TACCATTAGTTTGCCTATCGACTTT-A-TTTGTAAAGACTTTCC--A-CCTTTAGTCTGCTTATC
63 TACCTTTAGTCTACCTATCGGCTTTAACCTTG--GAGAC-TTCCTTACCCTCAAGTCTACCTATC
* * * * ** * * *
182671 AACTTTAACTCTAGAGACTTCCTTACCTCAAGTATGCCTATCGG
125 GACTTTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * * * * * * *
182715 CTTTGACCCTA-AGGATTTTCTTACCCTTAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTGCT
1 CTTTGACCCTAGA-GACTTCCTCA-CCTTTAGTCTGCTTGTCGGCTTTAACC-TAGAGACTTTC-
* * * * * * * * ** *
182779 TTACTTTTAGTTTACCCATCGACTTTGACCCTAGAGACTTCCTGA-CCTTTAGTCTGCCTATCTG
62 TTACCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATC-G
* * * * * * *
182843 -CTTTGACTCTAGAGACTTTCTTACCTCTAGTCTGCCTGTCGG
126 ACTTTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
* * * * * * * * *
182885 CTTTGACCTTGGATACTTTCCTTACCTTTTTAGTCTACTTGTTGGCTTTGACCTTTGAAACTTTC
1 CTTTGACCCTAGAGAC-TTCCTCACC--TTTAGTCTGCTTGTCGGCTTTAACC-TAGAGACTTTC
** * * * * * ** *
182950 TTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAGACTTGCTTA-CGTCAAGTCTGTCTGTCG
62 TTA-CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCG
* * * * * *
183014 ACTTTGGCCCTAGAGGCTTCTTTACCTTTAGTCTGCCTGTCGA
126 ACTTTGACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
** * ** * *
183057 CTTTGACCCTAGAGACTTTTTTACCCTTTAGTCTATTTGTCGGCTTTGACTCTAGAGACTTCCTT
1 CTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGCTTGTCGGCTTTAAC-CTAGAGACTTTCTT
* * * * * **
183122 ACCTTCAAGTCTACTTGTCGGCTTTGACCTTAGAGACTTCCTTGTCCTCAAGTCTACCTATC-AG
64 ACCTT-TAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGA-
* * * * ** * * *
183186 CTTTAACCTTAGAGACTTCTTTACCCTCAAGTCTGCCTGT-TA
127 CTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTACCTATCGA
** * * * * * * * *
183228 GCAATGGCCCAAGAGACTTCCTCACCTTCAGTTTGCTTGTTGGCTTTGACTATAGAGACTTTCTC
1 -CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAAC-CTAGAGACTTTCTT
* * ** * * * * ** * * *
183293 ACC-TTAGTCTTCCTGTTAGCTTTGACCTTAGAGACTT--TTTCACTTTTAGTTTGCCTGTCGAC
64 ACCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTAC-CCTCAAGTCTACCTATCGAC
* * * * *
183355 TTTGACCGTAGAGACTTCCTTACCTTTAGTC-AGCTTGTCGG
128 TTTGACCCTAGAGACTTCCTCACCTTTAGTCTA-CCTATCGA
* * * * * * * * * * *
183396 CTTTGACCTTGGATATTTCTTGACCTTTAGTATGCTTGTCGACTTTGACCCTGGAGACTTTATTA
1 CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTT-AACCTAGAGACTTTCTTA
* *
183461 CC-TTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCCTTAC
65 CCTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTAC
183503 TTCTAGTCTG
Statistics
Matches: 2459, Mismatches: 722, Indels: 320
0.70 0.21 0.09
Matches are distributed among these distances:
165 1 0.00
166 126 0.05
167 397 0.16
168 323 0.13
169 283 0.12
170 510 0.21
171 416 0.17
172 268 0.11
173 5 0.00
174 12 0.00
175 13 0.01
176 4 0.00
177 3 0.00
178 2 0.00
179 1 0.00
180 1 0.00
181 10 0.00
182 12 0.00
183 9 0.00
184 5 0.00
185 10 0.00
186 17 0.01
187 4 0.00
188 11 0.00
189 13 0.01
190 3 0.00
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.39
Consensus pattern (168 bp):
CTTTGACCCTAGAGACTTCCTCACCTTTAGTCTGCTTGTCGGCTTTAACCTAGAGACTTTCTTAC
CTTTAGTCTACCTATCGGCTTTAACCTTGGAGACTTCCTTACCCTCAAGTCTACCTATCGACTTT
GACCCTAGAGACTTCCTCACCTTTAGTCTACCTATCGA
Found at i:180740 original size:166 final size:168
Alignment explanation
Indices: 180500--180859 Score: 413
Period size: 166 Copynumber: 2.2 Consensus size: 168
180490 TACCTATCGA
* * * * *
180500 CTTTAACCCTAGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTTCTAA
1 CTTTAACTCTGGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTAACCATAAAGACTTCCTAA
* * * * * * * * *
180565 CTTTTAGTCTGCCTATTGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTT
66 CTCTTAGTCTACCTATCGCCTTTGACATTAGAGACTTCCTCACCATTAGTCTGCCTGTCAACTTT
* *** *
180630 AACCATG-AGGCTT-TTTACTTTTAGGCTGCTTGTTGG
131 AACCATGAAGACTTCCCCACTTTTAGGCTGCTTGTTAG
* * * *
180666 CTTTGAC-CTTGGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTAACCTTAGAGACTTCCTC
1 CTTTAACTC-TGGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTAACCATAAAGACTTCCTA
* *
180730 A-TCCTTAGTCTACTTATCGCCTTTGACATTAGAGACTTCCTCACCATTAGTTTGCCTGTCAACT
65 ACT-CTTAGTCTACCTATCGCCTTTGACATTAGAGACTTCCTCACCATTAGTCTGCCTGTCAACT
* * * *
180794 TTGACCGTGAAGACTTCCCCACTTTTAGTCTGCTTGTTAT
129 TTAACCATGAAGACTTCCCCACTTTTAGGCTGCTTGTTAG
180834 CTTTAACTCTGGAGACTTCCTTACCT
1 CTTTAACTCTGGAGACTTCCTTACCT
180860 CAAGTATGCC
Statistics
Matches: 160, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
165 2 0.01
166 112 0.70
167 5 0.03
168 40 0.25
169 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.39
Consensus pattern (168 bp):
CTTTAACTCTGGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTAACCATAAAGACTTCCTAA
CTCTTAGTCTACCTATCGCCTTTGACATTAGAGACTTCCTCACCATTAGTCTGCCTGTCAACTTT
AACCATGAAGACTTCCCCACTTTTAGGCTGCTTGTTAG
Found at i:180742 original size:250 final size:249
Alignment explanation
Indices: 175641--183738 Score: 1470
Period size: 251 Copynumber: 31.9 Consensus size: 249
175631 TTCCCTCAAT
* * * * *
175641 TCTGCTTTTTGGCTTTGACCATAGAGACGTCCTCACCTTTAGTCTACCTATCAGCTTTGACCTTG
1 TCTGC-TTTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTCTACCTATC-GCTTTGACCCTA
*** * ** * * * ** * *
175706 GAGACTTCCTCACCTTTAGTCTACCTATCGGCTTT-GTCTTAGAGACTTTCTGATTTTTAGTTTG
63 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCTG
* * * ** * * * * *
175770 CCTGTTGGCTTTTACCTTAAAAACTTCTTTAGCTTTAGTTTGCCTATC-GACTTTGGCCCTAGAG
128 CCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAG-CTTTGACCCTAGAG
* * * * * *
175834 ACTTT-TTACTTTTAGTCTGTCTGTTGGGTTTTACCTTGGAGACTTCCTTACCTTTTG
192 ACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * ** * * * * * * *
175891 TCTACCTATCAACTTTAACCATGGAGTCTTCCTCATCTTTAGTCTACTTATCGACTTTGACCTTA
1 TCT-GCTTTCGGCTTTGACCTTAGAGACTTCCTCA-CCTTAGTCTACCTATCG-CTTTGACCCTA
* * * ** * * *** * *
175956 GAAACTTCTTCACCATTAGTCTGCCTATCGGCTTTGACCATAAAGACTTCTTTACCTTTAGTTTG
63 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCTG
* * * * * * * * * * * *
176021 CTTGTCAACTTTAACTTTGGAGGCTTCTTTACC-TCATGTCTGCCTTTCAGCTTTAACCCTAAAG
128 CCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTA-GTCTGCCTATCAGCTTTGACCCTAGAG
* * *** * * ** * * * *
176085 ACATTCCTAACCTTCTTAGTCTATTTGTCTGCTTTGACCCTACAGATTTCCTAACTTTTTG
192 AC-TTTCTTACC-T-TTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * * **
176146 T-TAGCATGTCGGTTTTAACCCTTA-AGAATTCCTTACCTTTAGTCTGCCTATCTATTTTGACCC
1 TCT-GC-TTTCGGCTTTGA-CCTTAGAGACTTCCTCACC-TTAGTCTACCTATC-GCTTTGACCC
* * ** * * ** * * * *
176209 TAGAGACTTCCTTACCTTTAGTTTGCCTGTCGGCTTTGACCTTGGACATTTTCCTTACCTTCTTA
61 TAGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGA-CTTCC-CAACTT-TTA
* * * * * * ** * ** * ** *
176274 GTTTGCTTGTTGGCTTTAACCCTAAAGACTTTCTTACCCTAAAGTCTACCTATTGGCTTTAACCC
123 GTCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTA-CCTTTAGTCTGCCTATCAGCTTTGACCC
* * ** ** * * * *
176339 TAGAGACTTGCTTACGTCAAGTCTGTTTATCAGCTTTGATCTTGGAGACTTCCTCACCTTTAG
187 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * *** * * *
176402 -CTTGTCTGTCGGCTTTAACCTTAGAGACTTCTTTACCTTTTAGTCTGTTTGTCGGCTTTGATCT
1 TC-TG-CTTTCGGCTTTGACCTTAGAGACTTCCTCACC--TTAGTCTACCTATC-GCTTTGACCC
* * * ** * ** * ** * * * * * **
176466 TGGAAACTTCTTTTGCATAAAGTTTGCCTGTCGGCTTTAACCTTGGAA-ACTTCCTTACCCTCGA
61 TAGAGACTTC-CTCACCTTTAGTCTGTTTGTCGGCTTTAACCAT-AAAGACTTCC-CAACTTTTA
* * ** * ** ** ** * * ** **
176530 GTCTGCTTGTCGGCTTTAACCTCAGAGACTTTTTTACCCTCAAGTATGCCTTTTGGCTTCAACCC
123 GTCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTA-CCTTTAGTCTGCCTATCAGCTTTGACCC
* * * * * * * *
176595 TAAAGACTTCCTTACCTTTAGTTTGCTTATCGGCTTTGAGCC-TAGAGACTT-TTTCACATTTAG
187 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCCTT-ACCTTTAG
* * * * * * * * * * *
176658 TCTACCTGTCGGCTTTGACCCTAGAGACTTTCTAACTTTTAGTTTGCCTATTAGCTTTGACCTTG
1 TCT-GCTTTCGGCTTTGACCTTAGAGACTTCCTCAC-CTTAGTCTACCTA-TCGCTTTGACCCTA
* * * * * * *
176723 GAGACTTCCTTACCTTTAGTTTGCTTATCGGCTTTGAACC-TAGAGACTT-TCTACTTTTAGTCT
63 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTT-AACCATAAAGACTTCCCAACTTTTAGTCT
* * * * * * *
176786 G-CT-TGTCGACTTTGACCTTGGAGACTTCCTCACCTTTTA-TCTGCCTATCGGCATTAACCTTG
127 GCCTAT-TAG-CTTTGACCTTGGAGACTTCCTTACC-TTTAGTCTGCCTATCAGCTTTGACCCTA
* * * * * * * ** * * *
176848 GAGCCGTCCTCATCC-TTAGTCTACTTATCACCTTTGACCTTAGAGACTTCCTCACCATTAG
189 GAGACTTTCTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * *** * *
176909 TCTGCCTATCGGCTTTGACCAT-GAAGACTTCCCCATCGTTAGTCTGGTTGTCGACTTTGACCTT
1 TCTG-CTTTCGGCTTTGACCTTAG-AGACTTCCTCA-CCTTAGTCTACCTATCG-CTTTGACCCT
* * * * * * * ** *** *
176973 GGAAACTTTCTAACTTTTAGTCTGCTTGTTC-GCTTTGACTTTAGAA-ACTTTTTTAGC-TTTAG
62 AGAGACTTCCTCACCTTTAGTCTGTTTG-TCGGCTTTAACCATA-AAGAC-TTCCCAACTTTTAG
* * * * * ** * *
177035 TCTG-CT-TGTCGTCTTTG-CCCTAGAGACTTTC-TACTTTTAGTCTGCCTATTGGGTTTGACCT
124 TCTGCCTAT-TAG-CTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCC
* * * * * * * * * * *
177096 TGGAGACTTCCTTACCTTTTGTCTACCTATCGGATTTAACCTTGGAGTCTTTCTCATCTTTAG
187 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * * * *
177159 TCTACCTATCGACTTTGACCTTCGAGACTTCTTCACCTTAGTCTGCCTATCGACTTTGACCATGG
1 TCT-GCTTTCGGCTTTGACCTTAGAGACTTCCTCACCTTAGTCTACCTATCG-CTTTGACCCTAG
* * ** ** * *** * *
177224 AGACTT-CTGCACCTTTAGTCTGCTTGTCAGCTTTAACTTTGGAGGCTTCTTTAC-CTCATGTCT
64 AGACTTCCT-CACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTA-GTCT
** * * * * * * *
177287 GCCTATCGGCTTTGACCCTCGAGACGTTCCTAACCTTCTTAGCCTACTTGTCAGCTTTGACCCTA
127 GCCTATTAGCTTTGACCTTGGAGAC-TTCCTTACC-T-TTAGTCTGCCTATCAGCTTTGACCCTA
* * * * * * * * * *
177352 CAGA-TTTCCTAACTTTTTGT-TAGCCTATC-GATTTCAACCCTT-AAGAATTCCTTACCTTTAA
189 GAGACTTT-CTTACCTTTAGTCT-GCCTGTCGGCTTT-GA-CCTTGGAGACTTCCTTACCTTTAG
* * * * * * * * * *
177413 TCTGCCTATCAGCTTTGACCCTAGAGACTTCCTTACCTTTAGTTTGCTTGTCGGCTTTGACCTTG
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTCTACCTATC-GCTTTGACCCTA
* * * * ** * * ** * * **
177478 GACATTTTCCTCACCTTCTTAGTTTGCTTGTTTGCTTTGACCCTAGAA-ACTTTCTTACCCTGAA
63 GAGA-CTTCCTCACC-T-TTAGTCTGTTTGTCGGCTTTAACCATA-AAGAC-TTCCCAACTTTTA
* * * * * ** ** * * * * *
177542 GTCTGCCTATTGGCTTTAACCCTAGAGACTTGCTTATGTCAAGTTTGTCTATCGGCTTTGATCTT
123 GTCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCT
* * * *
177607 AGAGAC-TTCTTTACCTTTAGTATGTCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTTAG
188 AGAGACTTTC-TTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACC-TTTAG
** * *
177670 TCTATTTGTCGGCTTTGACC-TAGGAGACTTCCTTACCATAAAGTCTACCTATCGGCTTTGACCC
1 TCTGCTT-TCGGCTTTGACCTTA-GAGACTTCCTCACC-T-TAGTCTACCTATC-GCTTTGACCC
* * ** * * * ** ** * * **
177734 TGGAGACTTCCTTACCCTCAAGTTTGCTTGTCGGCTTTAACCTTGGAGACTTCTTTACCCTCAAG
61 TAGAGACTTCCTCA-CCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTC-CCAACTTTTAG
* * * * * ** * * *
177799 TCTACCTTTTGGCTTTAACCCTAAAGACTTCCTCACCTTTAGTCTGCTTATC-GACTTTGAGCCT
124 TCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAG-CTTTGACCCT
** * * ** * * *
177863 AGAGACTTT-TTCATATTTAGTCTGCTTGTCGGCTTTGACCCTAAAGACTTTCTGACTTTTAG
188 AGAGACTTTCTT-ACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * *
177925 TCTGCCTGTT-GGCTTTGACCTTGGAGACTTCCTTACCTTTAGTTTGCCTGTTGGCTTTGACCCT
1 TCTG-CT-TTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTCTACCT-ATCGCTTTGACCCT
* * * * * * ** * *
177989 AGAGACTT-TTTACTTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTTA-TC
62 AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCC-CAACTTTTAGTC
* ** * * * * * * * *
178052 TGCCTGTCGGCATTAACCTTGGAGCCTTCCTCATCCTTT-GTCTACTTATCACCTATGACCC-AG
126 TGCCTATTAGCTTTGACCTTGGAGACTTCCTTA-CCTTTAGTCTGCCTATCAGCTTTGACCCTAG
* * * * * * *
178115 AGACTTCCTTACCATTAGTCTGCCTGTCAGCTTTGACCGTGAAG-CTTCC-CATCTTTAG
190 AGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * ** * * *
178173 TCTGCTTGTTGGCTTT-AACTCTAGAGACTTTCTTTCCTCAAGTCTGCCTATCGGCTTTGATCCT
1 TCTGCTT-TCGGCTTTGACCT-TAGAGACTTCCTCACCT-TAGTCTACCTATC-GCTTTGACCCT
* * ** * * * ** *** *
178237 AGAGACTTTCTTACCCTCAAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTGCTTTACCTTTAGT
62 AGAGACTTCCTCA-CCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTT-CCCAACTTTTAGT
* * * * * * * * *
178302 TTGCCCATTGGCTTTGACCTTAGAGACCTCGTGACCTGTAGTCTGCCTATCTGCTTTGACCCTAG
125 CTGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTAG
* * * * *
178367 AAACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTCCTCACCTTTAG
190 AGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * *
178427 TCTACCTATT-GGCTTTAACCTTAGAGACTTCCTCACCTTTAG-CTTGCCTGTCGACTTTG-GCT
1 TCT-GCT-TTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTC-TACCTATCG-CTTTGACCC
* ** * * ** * * * * ** *
178489 TTGAAGACTTTTTGACTTTTAGTCTACTTGTTGGCTTTGACCTTGAAGACTTCTTTAGC-TTTAG
61 TAG-AGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTC-CCAACTTTTAG
* * * ** * * * * *
178553 TTTG-CT-TGTCGACTTTGACCCTAAAAACTT-TTTACTTTTAGTCTGCCTATCGGCTTTGACCT
124 TCTGCCTAT-TAG-CTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCC
* * * * * *
178615 TGGAGACTTCCTTACCTTTAGTATGCCTGTCGACTTTAACCTTGGAAACTT-CTTCATCC-TTAG
187 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTT-A-CCTTTAG
* * * * * * * * *
178678 TCTACCTATCGACTTTGACCCTAGAGACTTCTTCACCATTACTCTGCCTGTCGACTTTGACCAT-
1 TCT-GCTTTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTCTACCTATCG-CTTTGACCCTA
* * * * * * ** * *
178742 GAAGACTTCCCCATCTTTAGTTTGCTTGTCAGCTTTAACTC-TAGAGACTTCCTTAC-CTCATGT
63 G-AGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAAC-CATAAAGACTTCCCAACTTTTA-GT
* * ** * * * * * * * *
178805 CTGCCT-TTCGGCTTTGACCCTAAAGACTTTCCTAACTTTCTTAGTCTACTTGTCGGCTTCGA-G
125 CTGCCTATT-AGCTTTGACCTTGGAGAC-TTCCTTAC-CT-TTAGTCTGCCTATCAGCTTTGACC
* * * * * * *
178868 TTTG-TACATTTCTTAACTTTTAGTCTGCCTATTGGCTTTGACGCTT-GAGGA-GTCCTTACCTT
186 CTAGAGAC-TTTCTT-ACCTTTAGTCTGCCTGTCGGCTTTGAC-CTTGGA-GACTTCCTTACCTT
178930 TAG
247 TAG
* * * * * * * * * *
178933 TCTGCCTATCGGTTTTGACCCTAGAGACTTTCTGACTTTTAGTCTACTTGTTAGCTTTG-CCTTT
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTCCTCAC-CTTAGTCTACCT-ATCGCTTTGACC-CT
* * * * ** * * ** * *
178997 AGAGACTTCTTTACCATTAGTTTGCCTATCGGCTTTAACCTTGGAGATTTCCTCATC-TTTAGTC
62 AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCC-CAACTTTTAGTC
* * ** * * * * * *
179061 TACCTGTCGGCTTTGACCTTGGAGACTTCCTCACCTTTAGTCTACTTGTCAGCTTTAACTCTAGA
126 TGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTAGA
** * * * * **
179126 GACTTTCTTACCTCAAGTCTGCTTATCGACATTGACCTTGGAGACTTCCTTACCTCAAG
191 GACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * * * * * * * *
179185 TTTGTTTATCGACTTTGACCCTAGAGACTTTCTTACATGAAGTCTACTTGTTAGCTTT-AACCTC
1 TCTGCTT-TCGGCTTTGACCTTAGAGACTTCCTCACCT-TAGTCTACCT-ATCGCTTTGACCCT-
* ** ** * * **
179249 AGAGACTTCCTTACGCTCAAGTCTGCCTGTCGGCTTTGACCCTAAAGACTTTCGCC--CCATTAG
62 AGAGACTTCCTCAC-CTTTAGTCTGTTTGTCGGCTTTAACCATAAAGAC-TTC-CCAACTTTTAG
* * * ** * * * * *
179312 TTTGCCTGTTAGCTTTGACCCTGGAGACTTTTTTACCTTTAGTATGGCTGTCCGTTTTGACCCTA
124 TCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTA
* * ** * * * * * **
179377 AAGACTTCCTTACCTCAAGTTTGCTTGTCAGCTTTGAACTTGGAGACTTTCTTACCCTCAAG
189 GAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTA-CCTTTAG
* * * * * * * * * *
179439 TCTGCCTATCGGCTTTGATCTTGGAGACTTCCTAACCTTTATTGTACTTGTCGACTTTGACCTTG
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTCTACCTATCG-CTTTGACCCTA
* * * * * * * * *
179504 GTGACATCTTTACCTTTAGTCTGCTTGTTGGCTTTGACC-T-TAGA------AAC----A-TCTA
63 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCTG
* ** * * * * * *
179556 TCTATCGGCTTTGACGC-TGTAGAGTTTCCTTACCTTCTTAGTTTGCTTGTC-GACTTTAACCCT
128 CCTATTAGCTTTGAC-CTTGGAGA-CTTCCTTACC-T-TTAGTCTGCCTATCAG-CTTTGACCCT
* * ** * * * ** * * * *
179619 AGATACTTTTTTACCCTCAAGTTTGCTTATCAACTTTGACCCTGGAAACTTGCTTTACCTTCAG
188 AGAGACTTTCTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CCTTACCTTTAG
* ** * * * * * * *
179683 TTTGCCCGTCGGCTTTAACCTTAGAGACTTCATGACCTTTA-ACTTGCCTATCTACTTTGACCTT
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTC-TACCTATC-GCTTTGACCCT
* * ** * ** * ** ** * * *
179747 CA-AGACTTCCTTACCTTTAGTTTGCCTATTAGCTTTGATGATGGAGACTTACCTTACCTTTTTT
62 -AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTT-CC-CAAC-TTTTA
* * * * * ** * * * * *
179811 GTCTGCTTGTTGGCTTTGACCCTGAAGACTAT-CTTACCCTCAATTTTGGCTGTC-GATTTTGAC
123 GTCTGCCTATTAGCTTTGACCTTGGAGACT-TCCTTA-CCTTTAGTCTGCCTATCAG-CTTTGAC
* * * * ** * * *
179874 CTTGGAGACTTGCTTACGTCAAGTCTGTCTGTCGGCTTTGACCATGGAGACTT-TTCTACCTTTA
185 CCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCT-TACCTTTA
179938 G
249 G
* ** ** * * * * * * *** *
179939 TCCGTCTACCAACTTTGACCCTGGAGTCTTCTTTAACCTCTAGTATGTTTGTCGGCTTTGACCCT
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTC-CTCACCT-TAGTCTACCTATC-GCTTTGACCCT
* * * * * ** * ** * *
180004 AGAGACTTTCT-ACTTTTAGTCTGCTTGTCGGCTTTGACCTTCGAGACTTTCTTACCTTGAGTCT
62 AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCT
* * * ** * * *
180068 ACTTGTCGGCTTTAACCTTGGAGACTTCCTCATCC-TTAGTCTACCTATC-GCCTTTGACCCTAG
127 GCCTATTAGCTTTGACCTTGGAGACTTCCTTA-CCTTTAGTCTGCCTATCAG-CTTTGACCCTAG
* * * * * * * * * * **
180131 AGACTTCCTCATCATTAGTCAGCCTATCGACTTTGATCGTGAAGACTTCCCCACCTTTAG
190 AGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * * * *
180191 TTTGCTTGTCAGCTTT-AACTCTAGAGACTTCCTTACCTCAAGTCTACTTATCGATTTTGACTCT
1 TCTGCTT-TCGGCTTTGACCT-TAGAGACTTCCTCACCT-TAGTCTACCTATCG-CTTTGACCCT
* * * ** *** * * * * *** * *
180255 TGAGACTTTCTTACCCTCAAGTCTACCTGTCGACTTTGACCCTAGAGACTTTCTTTACCTTTAAT
62 AGAGACTTCCTCA-CCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGAC-TTCCCAACTTTTAGT
* ** * * * *
180320 TTGCC-CGTCGACTTTGACCCTAGAGACTT-CTTAACCTTTAGTCTGCCTAT-ATACTTTGACCC
125 CTGCCTATTAG-CTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCTATCA-GCTTTGACCC
* * **
180382 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTAACCTTGGAGATTTCCTTACCCTCAAG
187 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTA-CCTTTAG
* *
180446 TCTGCCATTT-GGCTTTGACCTTAGAGACTTCCTCACTTTCAGTCTACCTATCGACTTTAACCCT
1 TCTG-C-TTTCGGCTTTGACCTTAGAGACTTCCTCACCTT-AGTCTACCTATCG-CTTTGACCCT
* *
180510 AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTTCTAACTTTTAGTCT
62 AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCT
* * * *
180575 GCCTATTGGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTGTCAGCTTTAACCAT-GAG
127 GCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTAGAG
* * * * *
180639 GCTTT-TTACTTTTAGGCTGCTTGTTGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
192 ACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * **
180696 TCTGCTTGTCGGCTTTAACCTTAGAGACTTCCTCATCCTTAGTCTACTTATCGCCTTTGACATTA
1 TCTGCTT-TCGGCTTTGACCTTAGAGACTTCCTCA-CCTTAGTCTACCTATCG-CTTTGACCCTA
* * ** ** * * * *
180761 GAGACTTCCTCACCATTAGTTTGCCTGTCAACTTTGACCGTGAAGACTTCCCCACTTTTAGTCTG
63 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCTG
* * * * ** *
180826 CTTGTTATCTTT-AACTCTGGAGACTTCCTTACCTCAAGTATGCCTATCAGCTTTGACCCTAGAG
128 CCTATTAGCTTTGACCT-TGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTAGAG
** * * * * *
180890 ACTTTCTTACCCTCAAGTCTACCTGTCAGCTTTGACCTTGAAAACTTGCTTTACCTTTAG
192 ACTTTCTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CCTTACCTTTAG
* ** * * * *
180950 TTTGCCAATCGGATTTGTCCCTAGAGACTTCCTAACCTTTAGTCTACCTATCTGCTTTGACCCTA
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTCTACCTATC-GCTTTGACCCTA
* ** * *** * * * *
181015 GAGACTTCCTTACCTTTTTTCT-TCTTGTCGGCTTTAACCTTGGGGATTTTTCTAATCTTCTTAA
63 GAGACTTCCTCACCTTTAGTCTGT-TTGTCGGCTTTAACCATAAAGA-CTTCCCAA-CTT-TTAG
* * * * * * ** *
181079 TCTGCTTATTGGCTTTAACCTTAGAAACTTTCTTACCATGAAGTCTACCTATCAGCTTTGACCCT
124 TCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTACC-TTTAGTCTGCCTATCAGCTTTGACCCT
* * * * ** * * * * *
181144 GGACACTTGCTTA-CTTAAGTCTATCTGTCGACTTTGACCCTAGAGATTTCTTTACCTTTAG
188 AGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * *
181205 TCTGCCTGTGGGCTTTGACCCT-GAAGACTTCTTTACCCTCTGGAGACTTCGTTACATTTAAGTC
1 TCTG-CTTTCGGCTTTGACCTTAG-AGACTTCCTCA-CCT-T--AG---TC--TAC--------C
* * * * ** * * * **
181269 TGCATGTCAACTTTGACCCTGGAGA-ATCCTTACCCTCAAGTCTGCTTGTCGACTTTAACCTTGG
47 T--A--TC-GCTTTGACCCTAGAGACTTCCTCA-CCTTTAGTCTGTTTGTCGGCTTTAACCATAA
* ** * * ** * * * * ** * * * * *
181333 AGATTTCTTTACCCTCAAGTCTACCTTTTGGCTTTGACCCTAAAGACTTTCTTACCATCAATTTG
106 AGACTTC-CCAACTTTTAGTCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTG
* * * * * * * * *
181398 CCTATCGGCTTTGTCCTTAGAGCCTTCCTCACCTTTAGTCTGCCTATCGACTTTGACCTTTGAGA
170 CCTATCAGCTTTGACCCTAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGA
* * *
181463 ATT-TTTGACTTTTAG
235 CTTCCTT-ACCTTTAG
* * * * * * *** *
181478 TTTGCCTGCTGACTTTGACCTTAGAGACTTTCTCAGCTTTAGTCTGTTTATCGGCTTTGACTCTA
1 TCTGCTTTC-GGCTTTGACCTTAGAGACTTCCTCA-CCTTAGTCTACCTATC-GCTTTGACCCTA
* * * * * * ** ** ** *
181543 GAGACTTTCT-ACTTTTAGTCTGCTTGTTGACTTTTACGTTGGAGACTTCCTTACTTTTAGTTTG
63 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCTG
* ** * * * * * ** *
181607 CCTGTCGGCTTTAACCTTGGAGACTTCCTCA-TTCTTAGTCTACTTATTGGCTTTCACCCTAGAG
128 CCTATTAGCTTTGACCTTGGAGACTTCCTTACCT-TTAGTCTGCCTATCAGCTTTGACCCTAGAG
* * * * *
181671 AC-TTCTTCACCATTAGTCTACCTGTCAGCTTTGA-CTGTGGAGACTTCCCTACCATTAG
192 ACTTTCTT-ACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGGAGACTTCCTTACCTTTAG
* * * * * * * *
181729 TCTACTTGTCAGC-TTCAACTTAGGAGACTTTCTTACCTCACGTCTGCCTATCAGCTTTGACCCT
1 TCTGCTT-TCGGCTTTGACCTTA-GAGACTTCCTCACCTTA-GTCTACCTATC-GCTTTGACCCT
* ** * * * * * * * *
181793 AGAGACTTTCCTAACCTTCTTAGTCTACTTGTCGCCTTTGACCCTATAGATTTCCTAAATATTAG
62 AGAGAC-TTCCTCACC-T-TTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAG
* * ** * * *
181858 TCTACCTGTCGGCTTTGACCCTT-GAAAATTCCTTACCTTTAGTCTGCCTATCTA-CTTTGACTC
124 TCTGCCTATTAGCTTTGA-CCTTGGAGACTTCCTTACCTTTAGTCTGCCTATC-AGCTTTGACCC
* * * * * *
181921 TGGAGACTTCCTTACCTTTAGTCT-TCTATCAGCTTTGACCTTGGAGACTTTCATTACCTTTTTA
187 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGAC-TTCCTTACC--TTTA
181985 G
249 G
* ** * * * * * * * *
181986 TCTACTTGTTAGCTTTAACCCTAGAGACTTTCTTACCCTTAAGTCTGCTTGTCGATTTTGACCCT
1 TCTGCTT-TCGGCTTTGACCTTAGAGACTTCCTCA-CCTT-AGTCTACCTATCG-CTTTGACCCT
* * * ** * * * *** *
182051 AGAGACTTGCTTACGTCAAGTCTGTTTGTCGGCTTTGACC-TCGAAGGCTTCTTTACCTTTAGTC
62 AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCAT-AAAGACTTCCCAACTTTTAGTC
* * * * * ** * *
182115 TGCCTGTCAGCTTTGACCCTGGAGACATT-TTTACCCTCTAGTCTGTTTGTCGGCTTTGACCCTA
126 TGCCTATTAGCTTTGACCTTGGAGAC-TTCCTTA-CCTTTAGTCTGCCTATCAGCTTTGACCCTA
* * * * * * **
182179 GAGACTTCCTTACCTTAAAGTTTTCCTGTCGGCTTTGACCTTAGACACTTCCTTACCCTCGAG
189 GAGACTTTCTTACCTT-TAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTA-CCTTTAG
* * * * * * * *
182242 TCTGTCTATCGGCTTTAACCTTCGAGACTTCTTTACCCTCAAGTCTACCTTTTGGCTTTG-CCCT
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTCCTCA-CCT-TAGTCTACC-TATCGCTTTGACCC-
* * ** * * * * **** *
182306 TAGAGACTTCCTCTCTTTTAGTCTGCCTGTCGACTTTGACCGTAGAGACTTTTTTACCTTTAGTC
61 TAGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTC
* * ** * * * * * * ** * * *
182371 TGCTTGTCGGCTTTGACCTTGGAGACTTTCTGACTTTTATTCTGCTTGTTGGCTTTAACCTTGGA
126 TGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTAGA
* * * * *
182436 GAC-TTCTTTACCTTTAGTCTGCCTGTTGGCTTTGACCCTAGAGACTT-TTTACTTTTAG
191 GACTTTC-TTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* ** * * * * *
182494 TCTACTTGTCAACTTTGACCTTAGAGACTTCCTCACCCTTAGTCTGCCTGTCGGGTTT-AACCTT
1 TCTGCTT-TCGGCTTTGACCTTAGAGACTTCCTCA-CCTTAGTCTACCTATC-GCTTTGACCCTA
* *** * ** * * * ** ** *
182558 GAAAACTTCCTCATCC-TTAGTCTACCTATCACCTTTGACCCTAGAGACTTCCTTACCATTAGTT
63 G-AGACTTCCTCA-CCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTC
* * * * * * *
182622 TGCCTA-TCGACTTT-A-TTTGTAAAGACTTTCC--ACCTTTAGTCTGCTTATCAACTTTAACTC
126 TGCCTATTAG-CTTTGACCTTG--GAGAC-TTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCC
* ** * * * * * * *
182682 TAGAGACTTCCTTACCTCAAGTATGCCTATCGGCTTTGACCCT-AAGGATTTTCTTACCCTTAAG
187 TAGAGACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGA-GACTTCCTTA-CCTTTAG
* * * * * * * * *
182746 TTTGCCTGTCAGCTTTGACCTTGGAGACTTGCTTTACTTTTAGTTTACCCATCGACTTTGACCCT
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTT-CCTCAC-CTTAGTCTACCTATCG-CTTTGACCCT
* ** * * * * * ** * *
182811 AGAGACTTCCTGACCTTTAGTCTGCCTATCTGCTTTGACTC-TAGAGACTTTCTTACCTCTAGTC
62 AGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAAC-CATAAAGACTTCCCAACTTTTAGTC
* ** * * * * ** *
182875 TGCCTGTCGGCTTTGACCTTGGATACTTTCCTTACCTTTTTAGTCTACTTGTTGGCTTTGACCTT
126 TGCCTATTAGCTTTGACCTTGGAGAC-TTCCTTACC--TTTAGTCTGCCTATCAGCTTTGACCCT
* * ** ** * * **
182940 TGAAACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAGACTTGCTTACGTCAAG
188 AGAGACTTTCTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * * * * *
183003 TCTGTCTGTCGACTTTGGCCCTAGAGGCTTCTTTACCTTTAGTCTGCCTGTCGACTTTGACCCTA
1 TCTG-CTTTCGGCTTTGACCTTAGAGACTTCCTCACC-TTAGTCTACCTATCG-CTTTGACCCTA
** * * * * * * **
183068 GAGACTTTTTTACCCTTTAGTCTATTTGTCGGCTTTGACTC-TAGAGACTTCCTTACCTTCAAGT
63 GAGACTTCCTCA-CCTTTAGTCTGTTTGTCGGCTTTAAC-CATAAAGACTTCC-CAACTTTTAGT
* * * ** * * ** * * *
183132 CTACTTGTCGGCTTTGACCTTAGAGACTTCCTTGTCCTCAAGTCTACCTATCAGCTTTAACCTTA
125 CTGCCTATTAGCTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCTATCAGCTTTGACCCTA
** ** ** * *** * *
183197 GAGAC-TTCTTTACCCTCAAGTCTGCCTGTTAGCAATGGCCCAAGAGACTTCCTCACCTTCAG
189 GAGACTTTC-TTA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
* * * * * * *
183259 TTTGCTTGTTGGCTTTGA-CTATAGAGACTTTCTCACCTTAGTCTTCCTGTTAGCTTTGACCTTA
1 TCTGCTT-TCGGCTTTGACCT-TAGAGACTTCCTCACCTTAGTCTACCT-ATCGCTTTGACCCTA
** * * ** * * * * ** * *
183323 GAGACTTTTTCACTTTTAGTTTGCCTGTCGACTTTGACCGTAGAGACTTCCTTACCTTTAGTCAG
63 GAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCTG
* * ** * * * * * *
183388 CTTGTCGGCTTTGACCTTGGATA-TTTCTTGACCTTTAGTATGCTTGTC-GACTTTGACCCTGGA
128 CCTATTAGCTTTGACCTTGGAGACTTCCTT-ACCTTTAGTCTGCCTATCAG-CTTTGACCCTAGA
* *
183451 GACTTTATTACC-TTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCCTTA-CTTCTAG
191 GACTTTCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTT-TAG
* * * * * * * * * *
183509 TCTGCCTGTT-AGCTTTGACATTGGAGACTTTCTTAGCCTCAGGTCTGCCTGTCGGCTTTAACCT
1 TCTG-CT-TTCGGCTTTGACCTTAGAGACTTCCTCA-CCTTA-GTCTACCTATC-GCTTTGACCC
* * ** *** * * * * * * * **
183573 TAAAGACTTACT-ACCTCAAGTCTACCTGTCAGCTTTGACCTTGGAA-ACTTCCTTACCCTCAAG
61 TAGAGACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCAT-AAAGACTTCC-CAACTTTTAG
* * * * * * * *
183636 TCTGCTTATTGGCTTTGACCCTAGAGACTTCTTTGCCTTTAGTCTGCCTATCAGCTTTGATCTTA
124 TCTGCCTATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTA
* * * *
183701 GAGACTTT-TCCACCTTTTGTTTGCCTATCGGCTTTGAC
189 GAGACTTTCT-TACCTTTAGTCTGCCTGTCGGCTTTGAC
183739 ACAGGAGAAT
Statistics
Matches: 5865, Mismatches: 1620, Indels: 723
0.71 0.20 0.09
Matches are distributed among these distances:
240 18 0.00
241 9 0.00
242 2 0.00
243 28 0.00
244 114 0.02
245 5 0.00
246 4 0.00
247 8 0.00
248 69 0.01
249 92 0.02
250 561 0.10
251 831 0.14
252 608 0.10
253 530 0.09
254 583 0.10
255 722 0.12
256 769 0.13
257 330 0.06
258 298 0.05
259 70 0.01
260 24 0.00
261 2 0.00
263 3 0.00
265 1 0.00
267 2 0.00
270 2 0.00
271 2 0.00
272 31 0.01
273 91 0.02
274 12 0.00
275 44 0.01
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.39
Consensus pattern (249 bp):
TCTGCTTTCGGCTTTGACCTTAGAGACTTCCTCACCTTAGTCTACCTATCGCTTTGACCCTAGAG
ACTTCCTCACCTTTAGTCTGTTTGTCGGCTTTAACCATAAAGACTTCCCAACTTTTAGTCTGCCT
ATTAGCTTTGACCTTGGAGACTTCCTTACCTTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTT
TCTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCCTTACCTTTAG
Found at i:181860 original size:171 final size:170
Alignment explanation
Indices: 181682--181994 Score: 380
Period size: 171 Copynumber: 1.8 Consensus size: 170
181672 CTTCTTCACC
** * * * *
181682 ATTAGTCTACCTGTCAGCTTTGACTGTGGAGACTTCCCTACCATTAGTCTACTTGTC-AGCTTCA
1 ATTAGTCTACCTGTCAGCTTTGACCCTGGAAAATTCCCTACCATTAGTCTACCTATCTA-CTTCA
* *
181746 ACT-TAGGAGACTTTCTTACC-TCACGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCCTAACC
65 ACTCT-GGAGACTTCCTTACCTTCA-GTCT-CCTATCAGCTTTGACCCTAGAGACTTTCATAACC
181809 TTCTTAGTCTACTTGTCGCCTTTGACCCTATAGATTTCCTAAAT
127 TTCTTAGTCTACTTGTCGCCTTTGACCCTATAGATTTCCTAAAT
* * * * * **
181853 ATTAGTCTACCTGTCGGCTTTGACCCTTGAAAATTCCTTACCTTTAGTCTGCCTATCTACTTTGA
1 ATTAGTCTACCTGTCAGCTTTGACCCTGGAAAATTCCCTACCATTAGTCTACCTATCTACTTCAA
* * * * * *
181918 CTCTGGAGACTTCCTTACCTTTAGTCTTCTATCAGCTTTGACCTTGGAGACTTTCATTACCTTTT
66 CTCTGGAGACTTCCTTACCTTCAGTCTCCTATCAGCTTTGACCCTAGAGACTTTCATAACCTTCT
181983 TAGTCTACTTGT
131 TAGTCTACTTGT
181995 TAGCTTTAAC
Statistics
Matches: 118, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
170 44 0.37
171 70 0.59
172 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.39
Consensus pattern (170 bp):
ATTAGTCTACCTGTCAGCTTTGACCCTGGAAAATTCCCTACCATTAGTCTACCTATCTACTTCAA
CTCTGGAGACTTCCTTACCTTCAGTCTCCTATCAGCTTTGACCCTAGAGACTTTCATAACCTTCT
TAGTCTACTTGTCGCCTTTGACCCTATAGATTTCCTAAAT
Found at i:182287 original size:129 final size:125
Alignment explanation
Indices: 181996--182317 Score: 305
Period size: 129 Copynumber: 2.5 Consensus size: 125
181986 TCTACTTGTT
* * ** *
181996 AGCTTTAACCCTAGAGACTTTCTTACCCTTAAGTCTGCTTGTCGATTTTGACCCTAGAGACTTGC
1 AGCTTTAACCCTAGAGACTTT-TTACCCTCAAGTCTGTTTGTCGGCTTTGACCCTAGAGACTTCC
* * * ** *
182061 TTACGTCAAGTCTGTTTGTCGGCTTTGACCTCGAAGGCTTCTTTACCTTTAGTCTGCCTGTC
65 TTACGTAAAGTCTGTTTGTCGGCTTTGACCTAGAA-GCTTCCTTACCTCGAGTCTGCCTATC
* * *
182123 AGCTTTGACCCTGGAGACATTTTTACCCTCTAGTCTGTTTGTCGGCTTTGACCCTAGAGACTTCC
1 AGCTTTAACCCTAGAGAC-TTTTTACCCTCAAGTCTGTTTGTCGGCTTTGACCCTAGAGACTTCC
* *
182188 TTACCTTAAAGT-T-TTCCTGTCGGCTTTGACCTTAGACA-CTTCCTTACCCTCGAGTCTGTCTA
65 TTA-CGTAAAGTCTGTT--TGTCGGCTTTGACC-TAGA-AGCTTCCTTA-CCTCGAGTCTGCCTA
182250 TC
124 TC
* * * *
182252 GGCTTTAACCTTCGAGACTTCTTTACCCTCAAGTCTACCTTT-T-GGCTTTG-CCCTTAGAGACT
1 AGCTTTAACCCTAGAGACTT-TTTACCCTCAAGTCT--GTTTGTCGGCTTTGACCC-TAGAGACT
182314 TCCT
62 TCCT
182318 CTCTTTTAGT
Statistics
Matches: 162, Mismatches: 22, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
126 2 0.01
127 57 0.35
128 35 0.22
129 63 0.39
130 2 0.01
131 3 0.02
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.38
Consensus pattern (125 bp):
AGCTTTAACCCTAGAGACTTTTTACCCTCAAGTCTGTTTGTCGGCTTTGACCCTAGAGACTTCCT
TACGTAAAGTCTGTTTGTCGGCTTTGACCTAGAAGCTTCCTTACCTCGAGTCTGCCTATC
Found at i:182502 original size:125 final size:126
Alignment explanation
Indices: 181396--183738 Score: 1157
Period size: 125 Copynumber: 18.5 Consensus size: 126
181386 ACCATCAATT
* * * * * * * * *
181396 TGCCTATCGGCTTTGTCCTTAGAGCCTTCCTCACCTTTAGTCTGCCTATCGACTTTGACCTTTGA
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGA
* * * * * * * *
181461 GAATT-TTTGACTTTTAGTTTGCCTG-CTGACTTTGACCTTAGAGACTTTCTCAGCTTTAGTC
66 GACTTCCTT-ACCTTTAGTCTGCTTGTC-GGCTTTGACCTTGGAGACTTTCTCACCTTTAGTC
** * * * * * * * ** *
181522 TGTTTATCGGCTTTGA-CTCTAGAGACTT-TCTACTTTTAGTCTGCTTGTTGACTTTTACGTTGG
1 TGCCTGTCGGCTTTGACCT-TAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* * * * * *
181585 AGACTTCCTTACTTTTAGTTTGCCTGTCGGCTTTAACCTTGGAGACTTCCTCA-TTCTTAGTC
65 AGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTCACCT-TTAGTC
* * * * * * * * * * ** *
181647 TACTTATTGGCTTTCACCCTAGAGACTTCTTCACCATTAGTCTACCTGTCAGCTTTGACTGTGGA
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGA
* * * * * * * *
181712 GACTTCCCTACCATTAGTCTACTTGTCAGC-TTCAACTTAGGAGACTTTCTTACC-TCACGTC
66 GACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTT-GGAGACTTTCTCACCTTTA-GTC
* * * * * * * *
181773 TGCCTATCAGCTTTGACCCTAGAGACTTTCCTAACCTTCTTAGTCTACTTGTCGCCTTTGACCCT
1 TGCCTGTCGGCTTTGACCTTAGAGAC-TTCTTTACC-T-TTAGTCTGCCTGTCGGCTTTGACCCT
* * ** * * * * * *
181838 ATAGATTTCC-TAAATATTAGTCTACCTGTCGGCTTTGACCCTT-GAAAATTCCTTACCTTTAGT
63 AGAGACTTCCTTACCT-TTAGTCTGCTTGTCGGCTTTGA-CCTTGGAGACTTTCTCACCTTTAGT
181901 C
126 C
* ** * * * * * * *
181902 TGCCTATCTACTTTGA-CTCTGGAGACTTCCTTACCTTTAGTCT-TCTATCAGCTTTGACCTTGG
1 TGCCTGTCGGCTTTGACCT-TAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* * ** * * * * *
181965 AGACTTTCATTACCTTTTTAGTCTACTTGTTAGCTTTAACCCTAGAGACTTTCTTACCCTTAAGT
65 AGAC-TTCCTTACC--TTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTCA-CCTTTAGT
182030 C
126 C
* ** * * ** ** *
182031 TGCTTGTCGATTTTGACCCTAGAGACTTGC-TTACGTCAAGTCTGTTTGTCGGCTTTGA-CCTCG
1 TGCCTGTCGGCTTTGACCTTAGAGACTT-CTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* * * * * * *
182094 AAGGCTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCCTGGAGACATTT-TTACCCTCTAGTC
65 -AGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGAC-TTTCTCA-CCTTTAGTC
** * * * * * *
182158 TGTTTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTAAAGTTTTCCTGTCGGCTTTGACCTTAG
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTT-TAGTCTGCCTGTCGGCTTTGACCCTAG
* ** * * * * **
182223 ACACTTCCTTACCCTCGAGTCTG-TCTATCGGCTTTAACCTTCGAGAC-TTCTTTACCCTCAAGT
65 AGACTTCCTTA-CCTTTAGTCTGCT-TGTCGGCTTTGACCTTGGAGACTTTC-TCA-CCTTTAGT
182286 C
126 C
* * * * * * * *
182287 TACCTTTTGGCTTTGCCCTTAGAGACTTCCTCT-CTTTTAGTCTGCCTGTCGACTTTGACCGTAG
1 TGCCTGTCGGCTTTGACCTTAGAGACTT-CTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
** * * *
182351 AGACTTTTTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTGACTTTTATTC
65 AGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTCACCTTTAGTC
* * * * *
182413 TGCTTGTTGGCTTTAACCTTGGAGACTTCTTTACCTTTAGTCTGCCTGTTGGCTTTGACCCTAGA
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGA
* * * ** * * *
182478 GACTT-TTTACTTTTAGTCTACTTGTCAACTTTGACCTTAGAGACTTCCTCACCCTTAGTC
66 GACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTCACCTTTAGTC
* * * * * * * **
182538 TGCCTGTCGGGTTTAACCTT-GAAAACTTCCTCATCC-TTAGTCTACCTATCACCTTTGACCCTA
1 TGCCTGTCGGCTTTGACCTTAG-AGACTTCTTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * * *
182601 GAGACTTCCTTACCATTAGTTTGCCTATCGACTTT-A-TTTGTAAAGACTTTC-CACCTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTG--GAGACTTTCTCACCTTTAGTC
* * ** * * ** * *
182663 TGCTTATCAACTTT-AACTCTAGAGACTTCCTTACCTCAAGTATGCCTATCGGCTTTGACCCTA-
1 TGCCTGTCGGCTTTGACCT-TAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* * * * * * * * * *
182726 AGGATTTTCTTACCCTTAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTGCTTTACTTTTAGTT
65 A-GACTTCCTTA-CCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTC-TCACCTTTAGTC
* ** * * * * * * *
182791 TACCCATCGACTTTGACCCTAGAGACTTCCTGACCTTTAGTCTGCCTATCTGCTTTGACTCTAGA
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGA
* * * * *
182856 GACTTTCTTACCTCTAGTCTGCCTGTCGGCTTTGACCTTGGATACTTTCCTTACCTTTTTAGTC
66 GACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTT-CTCACC--TTTAGTC
* * * * * ** ** * *
182920 TACTTGTTGGCTTTGACCTTTGAAACTT-TCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTG
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCT-TTA-CCTTTAGTCTGCCTGTCGGCTTTGACCCTA
* * ** * * * * * *
182984 GAGACTTGCTTACGTCAAGTCTG-TCTGTCGACTTTGGCCCTAGAGGC-TTCTTTACCTTTAGTC
64 GAGACTTCCTTACCTTTAGTCTGCT-TGTCGGCTTTGACCTTGGAGACTTTC-TCACCTTTAGTC
* * * *** *
183047 TGCCTGTCGACTTTGACCCTAGAGACTTTTTTACCCTTTAGTCTATTTGTCGGCTTTGACTCTAG
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* * * * ** **
183112 AGACTTCCTTACCTTCAAGTCTACTTGTCGGCTTTGACCTTAGAGACTTCCTTGTCCTCAAGTC
65 AGACTTCCTTACCTT-TAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTC-TCACCTTTAGTC
* * * * ** ** ** * *
183176 TACCTATCAGCTTTAACCTTAGAGACTTCTTTACCCTCAAGTCTGCCTGTTAGCAATGGCCCAAG
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* * * * *
183241 AGACTTCCTCACCTTCAGTTTGCTTGTTGGCTTTGA-CTATAGAGACTTTCTCACC-TTAGTC
65 AGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCT-TGGAGACTTTCTCACCTTTAGTC
* ** * * * *
183302 TTCCTGTTAGCTTTGACCTTAGAGACTT-TTTCACTTTTAGTTTGCCTGTCGACTTTGACCGTAG
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTTT-ACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* * * *
183366 AGACTTCCTTACCTTTAGTCAGCTTGTCGGCTTTGACCTTGGATA-TTTCTTGACCTTTAGTA
65 AGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTC-TCACCTTTAGTC
* * * * * * *
183428 TGCTTGTCGACTTTGACCCTGGAGACTT-TATTACC-TTAGTCTGCCTATCGGCTTTGACCTTGG
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCT-TTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* ** * * *
183491 AGACTTCCTTA-CTTCTAGTCTGCCTGTTAGCTTTGACATTGGAGACTTTCTTAGCC-TCAGGTC
65 AGACTTCCTTACCTT-TAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTCA-CCTTTA-GTC
* * ** * * * *
183554 TGCCTGTCGGCTTTAACCTTAAAGACTTAC--TACCTCAAGTCTACCTGTCAGCTTTGACCTTGG
1 TGCCTGTCGGCTTTGACCTTAGAGACTT-CTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAG
* ** * * * * **
183617 AAACTTCCTTACCCTCAAGTCTGCTTATTGGCTTTGACCCTAGAGAC-TTCTTTGCCTTTAGTC
65 AGACTTCCTTA-CCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTC-TCACCTTTAGTC
* * * * * * *
183680 TGCCTATCAGCTTTGATCTTAGAGACTT-TTCCACCTTTTGTTTGCCTATCGGCTTTGAC
1 TGCCTGTCGGCTTTGACCTTAGAGACTTCTT-TACCTTTAGTCTGCCTGTCGGCTTTGAC
183739 ACAGGAGAAT
Statistics
Matches: 1692, Mismatches: 439, Indels: 171
0.74 0.19 0.07
Matches are distributed among these distances:
124 17 0.01
125 407 0.24
126 386 0.23
127 273 0.16
128 224 0.13
129 302 0.18
130 80 0.05
131 3 0.00
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (126 bp):
TGCCTGTCGGCTTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCCTAGA
GACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTCACCTTTAGTC
Found at i:182820 original size:128 final size:127
Alignment explanation
Indices: 182672--182902 Score: 313
Period size: 128 Copynumber: 1.8 Consensus size: 127
182662 CTGCTTATCA
* * *
182672 ACTTTAACTCTAGAGACTTCCTTACCTCAAGTATGCCTATCGGCTTTGACCCTA-AGGATTTTCT
1 ACTTTAACCCTAGAGACTTCCTGACCTCAAGTATGCCTATCGGCTTTGACCCTAGA-GACTTTCT
*
182736 TACC-CTTAAGTTTGCCTGTCAGCTTTGACCTTGGAGACTTGCTTTACTTTTAGTTTACCCATCG
65 TACCTC-T-AGTCTGCCTGTCAGCTTTGACCTTGGAGACTTGCTTTACTTTTAGTTTACCCATCG
* ** * * *
182800 ACTTTGACCCTAGAGACTTCCTGACCTTTAGTCTGCCTATCTGCTTTGACTCTAGAGACTTTCTT
1 ACTTTAACCCTAGAGACTTCCTGACCTCAAGTATGCCTATCGGCTTTGACCCTAGAGACTTTCTT
* *
182865 ACCTCTAGTCTGCCTGTCGGCTTTGACCTTGGATACTT
66 ACCTCTAGTCTGCCTGTCAGCTTTGACCTTGGAGACTT
182903 TCCTTACCTT
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
127 29 0.33
128 58 0.65
129 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (127 bp):
ACTTTAACCCTAGAGACTTCCTGACCTCAAGTATGCCTATCGGCTTTGACCCTAGAGACTTTCTT
ACCTCTAGTCTGCCTGTCAGCTTTGACCTTGGAGACTTGCTTTACTTTTAGTTTACCCATCG
Found at i:182934 original size:45 final size:43
Alignment explanation
Indices: 182857--183219 Score: 152
Period size: 43 Copynumber: 8.5 Consensus size: 43
182847 GACTCTAGAG
* ** *
182857 ACTTTCTTA-CCTCTAGTCTGCCTGTCGGCTTTGACCTTGGAT
1 ACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAA
** * *
182899 ACTTTCCTTA-CCTTTTTAGTCT-ACTTGTTGGCTTTGACCTTTGAA
1 ACTTT-CTTATCC--TCAAGTCTAAC-TGTCGGCTTTGACCTTGGAA
*
182944 ACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAG
1 ACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAA
* * ** * * * * *
182987 ACTTGCTTA-CGTCAAGTCTGTCTGTCGACTTTGGCCCTAGAG
1 ACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAA
* ** ** * * * *
183029 GC-TTCTT-TACCTTTAGTCTGCCTGTCGACTTTGACCCTAGAG
1 ACTTTCTTAT-CCTCAAGTCTAACTGTCGGCTTTGACCTTGGAA
* * ** ** * *
183071 ACTTTTTTACCCTTTAGTCTATTTGTCGGCTTTGA-CTCTAGAG
1 ACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCT-TGGAA
* * *
183114 ACTTCCTTA-CCTTCAAGTCT-ACTTGTCGGCTTTGACCTTAGAG
1 ACTTTCTTATCC-TCAAGTCTAAC-TGTCGGCTTTGACCTTGGAA
* * * * * * * *
183157 ACTTCCTTGTCCTCAAGTCTACCTATCAGCTTTAACCTTAGAG
1 ACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAA
*
183200 AC-TTCTTTACCCTCAAGTCT
1 ACTTTC-TTATCCTCAAGTCT
183220 GCCTGTTAGC
Statistics
Matches: 257, Mismatches: 47, Indels: 33
0.76 0.14 0.10
Matches are distributed among these distances:
41 4 0.02
42 66 0.26
43 144 0.56
44 12 0.05
45 31 0.12
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.40
Consensus pattern (43 bp):
ACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAA
Found at i:183286 original size:214 final size:214
Alignment explanation
Indices: 182811--183640 Score: 570
Period size: 214 Copynumber: 3.9 Consensus size: 214
182801 CTTTGACCCT
* *
182811 AGAGACTTCCTGACCTTTAGTCTGCCTATCT-GCTTTGACTCTAGAGACTTTCTTACCTCTAGTC
1 AGAGACTTCCTCACCTTTAGTCTGCCTGT-TGGCTTTGACTCTAGAGACTTTCTTACCTCTAGTC
* * * ** *
182875 TGCCTGTCGGCTTTGACCTTGGATACTTTCCTTACCTTTTTAGTCTACTTGTTGGCTTTGACCTT
65 TACCTGTCGGCTTTGACCTTAGAGACTTTCCTTACCTTTCAAGTCTACTTGTCGGCTTTGACCTT
* * * * * * *
182940 TGAAACTTTCTTATCCTCAAGTCTAACTGTCGGCTTTGACCTTGGAGACTTGCTTACGTCAAGTC
130 AGAAACTTCCTTATCCTCAAGTCTAACTATCAGCTTTAACCTTAGAGACTTGCTTACCTCAAGTC
* * ** *
183005 TGTCTGTCGACTTTGGCCCT
195 TGCCTGTAGACAATGGCCCA
* * * * * * * *
183025 AGAGGCTTCTTTACCTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACTTTTTTACCCTTTAGTC
1 AGAGACTTCCTCACCTTTAGTCTGCCTGTTGGCTTTGACTCTAGAGACTTTCTTA-CCTCTAGTC
**
183090 TATTTGTCGGCTTTGA-CTCTAGAGAC-TTCCTTACC-TTCAAGTCTACTTGTCGGCTTTGACCT
65 TACCTGTCGGCTTTGACCT-TAGAGACTTTCCTTACCTTTCAAGTCTACTTGTCGGCTTTGACCT
* * *
183152 TAGAGACTTCCTTGTCCTCAAGTCTACCTATCAGCTTTAACCTTAGAGACTT-CTTTACCCTCAA
129 TAGAAACTTCCTTATCCTCAAGTCTAACTATCAGCTTTAACCTTAGAGACTTGC-TTA-CCTCAA
183216 GTCTGCCTGTTAG-CAATGGCCCA
192 GTCTGCCTG-TAGACAATGGCCCA
* * * * *
183239 AGAGACTTCCTCACCTTCAGTTTGCTTGTTGGCTTTGACTATAGAGACTTTCTCACCT-TAGTCT
1 AGAGACTTCCTCACCTTTAGTCTGCCTGTTGGCTTTGACTCTAGAGACTTTCTTACCTCTAGTCT
* ** * * * * * *
183303 TCCTGTTAGCTTTGACCTTAGAGACTTT--TT-CACTTT-TAGTTTGCCTGTCGACTTTGACCGT
66 ACCTGTCGGCTTTGACCTTAGAGACTTTCCTTAC-CTTTCAAGTCTACTTGTCGGCTTTGACCTT
* ** * * * * * * * **
183364 AGAGACTTCCTTA-CCTTTAGTC-AGCTTGTCGGCTTTGACCTTGGATA-TTTCTTGACCTTTAG
130 AGAAACTTCCTTATCCTCAAGTCTAAC-TATCAGCTTTAACCTTAGAGACTTGCTT-ACCTCAAG
* * * ** * *
183426 TATGCTTGTCGACTTTGACCCT
193 TCTGCCTGTAGACAATGGCCCA
* ** * * * * * *
183448 GGAGACTTTATTACC-TTAGTCTGCCTATCGGCTTTGAC-CTTGGAGACTTCCTTACTTCTAGTC
1 AGAGACTTCCTCACCTTTAGTCTGCCTGTTGGCTTTGACTC-TAGAGACTTTCTTACCTCTAGTC
* ** * * * * * *
183511 TGCCTGTTAGCTTTGACATTGGAGACTTT-CTTAGCC--TCAGGTCTGCCTGTCGGCTTTAACCT
65 TACCTGTCGGCTTTGACCTTAGAGACTTTCCTTA-CCTTTCAAGTCTACTTGTCGGCTTTGACCT
* * * * * * *
183573 TA-AAGACTTAC-TA-CCTCAAGTCTACCTGTCAGCTTTGACCTTGGAAACTTCCTTACCCTCAA
129 TAGAA-ACTTCCTTATCCTCAAGTCTAACTATCAGCTTTAACCTTAGAGACTTGCTTA-CCTCAA
183635 GTCTGC
192 GTCTGC
183641 TTATTGGCTT
Statistics
Matches: 485, Mismatches: 107, Indels: 52
0.75 0.17 0.08
Matches are distributed among these distances:
208 33 0.07
209 96 0.20
210 69 0.14
211 35 0.07
212 27 0.06
213 77 0.16
214 120 0.25
215 28 0.06
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (214 bp):
AGAGACTTCCTCACCTTTAGTCTGCCTGTTGGCTTTGACTCTAGAGACTTTCTTACCTCTAGTCT
ACCTGTCGGCTTTGACCTTAGAGACTTTCCTTACCTTTCAAGTCTACTTGTCGGCTTTGACCTTA
GAAACTTCCTTATCCTCAAGTCTAACTATCAGCTTTAACCTTAGAGACTTGCTTACCTCAAGTCT
GCCTGTAGACAATGGCCCA
Found at i:183579 original size:932 final size:926
Alignment explanation
Indices: 181295--183707 Score: 2611
Period size: 932 Copynumber: 2.6 Consensus size: 926
181285 CCCTGGAGAA
* * * * *
181295 TCCTTACCCTCAAGTCTGCTTGTC-GACTTTAACCTTGGAGATTTCTTTACCCTCAAGTCTACCT
1 TCCTTACCCTCAAGTCTACCTATCAG-CTTTAACCTTAGAGACTTCTTTACCCTCAAGTCTACCT
* * * * * * * *
181359 TTTGGCTTTGACCCTAA-AGACTTTCTTACCATCAATTTGCCTATCGGCTTTGTCCTTAGAGCCT
65 TTTGGC-TTGGCCCTAAGAGACTTCCTCACCTTCAGTTTGCCTGTCGGCTTTG-ACTTAGAGACT
* * * * *
181423 TCCTCACCTTTAGTCTGCCT-ATCGACTTTGACCTTTGAGAATTTTTGACTTTTAGTTTGCCTG-
128 TTCTCACCTTTAGTCTGCCTGTTAG-CTTTGACCTTAGAGACTTTTTGACTTTTAGTTTGCCTGT
* * * * * * *
181486 CTGACTTTGACCTTAGAGACTTTCTCAGCTTTAGTCTGTTTATCGGCTTTGACTCTAGAGACTTT
192 C-GACTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGAC-CTTG-GAATTT
* * * * *
181551 C-TACTTTTAGTCTGCTTGTTGACTTTTACGTTGGAGACTTCCTTACTTTTAGTTTGCCTGTCGG
254 CTTACTTTTAGTCTGCTTGTCGACTTTGACCTTGGAGACTTCCTTAC-CTTAGTCTGCCTGTCGG
* * *
181615 CTTTAACCTTGGAGACTTCCTCATTCTTAGTCTACTTATTGGCTTTCACCCTAGAGAC-TTCTTC
318 CTTTAACCTTGGAGACTTCCTCATTCTTAGTCTACCTATTAGCTTTGACCCTAGAGACTTTCTT-
* * ** * *
181679 ACCATTAGTCTACCTGTCAGCTTTGACTGTGGAGACTTCCCTACCATTAGTCTACTTGTCAGCTT
382 ACCATTAGTCTGCCTGTCGGCTTT-ACTGTAAAGACTTACC-ACCTTTAGTCTACTTGTCAGCTT
* * * * * *
181744 CAACT-TAGGAGACTTTCTTACCTCACGTCTGCCTATCAGCTTTGACCCTAGAGACTTTCCTAAC
445 TAACTCTA-GAGACTTCCTTACCTCAAGTCTGCCTATCGGCTTTGACCCTAGAGA-TTTTCTTAC
* * * * * ** *
181808 CTTCTTAGTCTACTTGTC-GCCTTTGACCCTATAGA-TTTCCTAAATATTAGTCTACCTGTCGGC
508 C--CTTAGTCTGCCTGTCAG-CTTTGACCTTAGAGACTTGCCTAAATATTAGTCTACCCATCGAC
* * *
181871 TTTGACCCTTGAAAATTCCTTACCTTTAGTCTGCCTATCTACTTTGACTCTGGAGACTTCCTTAC
570 TTTGACCCTAGAAAATTCCTGACCTTTAGTCTGCCTATCTACTTTGACTCTAGAGACTTCCTTAC
* *
181936 CTTTAGTCTTCTATCAGCTTTGACCTTGGAGACTTTCATTACCTTTTTAGTCTACTTGTTAGCTT
635 CTCTAGTCTCCTATCAGCTTTGACCTTGGAGACTTTCATTACCTTTTTAGTCTACTTGTTAGCTT
* * * *
182001 TAACCCTAGAGACTTTCTTACCCTTAAGTCTGCTTGTCGATTTTGACCCTAGAGACTTGCTTACG
700 TAACCCTAGAAACTTTCTTACCCTCAAGTCTACTTGTCGACTTTGACCCTAGAGACTTGCTTACG
* * *
182066 TCAAGTCTGTTTGTCGGCTTTGACCTCGAAGGCTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGA
765 TCAAGTCTGTCTGTCGACTTTGACCTAGAAGGCTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGA
* *
182131 CCCTGGAGACATTTTTACCCTCTAGTCTGTTTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTA
830 CCCTAGAGACATTTTTACCCTCTAGTCTATTTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTA
* *
182196 AAGTTTTCCTGTCGGCTTTGACCTTAGACACT
895 AAGTCTACCTGTCGGCTTTGACCTTAGACACT
* ** * *
182228 TCCTTACCCTCGAGTCTGTCTATCGGCTTTAACCTTCGAGACTTCTTTACCCTCAAGTCTACCTT
1 TCCTTACCCTCAAGTCTACCTATCAGCTTTAACCTTAGAGACTTCTTTACCCTCAAGTCTACCTT
* * * * * * * *
182293 TTGGCTTTGCCCTTAGAGACTTCCTCTCTTTTAGTCTGCCTGTCGACTTTGACCGTAGAGACTTT
66 TTGGCTTGGCCCTAAGAGACTTCCTCACCTTCAGTTTGCCTGTCGGCTTTGA-CTTAGAGACTTT
* * * ** * * * *
182358 TTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCTGACTTTTA-TTCTGCTTGTTG
130 CTCACCTTTAGTCTGCCTGTTAGCTTTGACCTTAGAGACTTTTTGACTTTTAGTT-TGCCTGTCG
* * * * * * * *
182422 GCTTTAACCTTGGAGACTTCTTTACCTTTAGTCTGCCTGTTGGCTTTGACCCTAGAGACTTT-TT
194 ACTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGA-CCTTG-GAATTTCTT
* * * * *
182486 ACTTTTAGTCTACTTGTCAACTTTGACCTTAGAGACTTCCTCACCCTTAGTCTGCCTGTCGGGTT
257 ACTTTTAGTCTGCTTGTCGACTTTGACCTTGGAGACTTCCTTA-CCTTAGTCTGCCTGTCGGCTT
* * * * * *
182551 TAACCTTGAAAACTTCCTCATCCTTAGTCTACCTATCACCTTTGACCCTAGAGACTTCCTTACCA
321 TAACCTTGGAGACTTCCTCATTCTTAGTCTACCTATTAGCTTTGACCCTAGAGACTTTCTTACCA
* * * * * * * *
182616 TTAGTTTGCCTATCGACTTTATTTGTAAAGACTTTCCACCTTTAGTCTGCTTATCAACTTTAACT
386 TTAGTCTGCCTGTCGGCTTTA-CTGTAAAGACTTACCACCTTTAGTCTACTTGTCAGCTTTAACT
*
182681 CTAGAGACTTCCTTACCTCAAGTATGCCTATCGGCTTTGACCCTA-AGGATTTTCTTACCCTTAA
450 CTAGAGACTTCCTTACCTCAAGTCTGCCTATCGGCTTTGACCCTAGA-GATTTTCTTACCCTT-A
* * * * * * *
182745 GTTTGCCTGTCAGCTTTGACCTTGGAGACTTGCTTTACTTTTAGTTTACCCATCGACTTTGACCC
513 GTCTGCCTGTCAGCTTTGACCTTAGAGACTTGCCTAAATATTAGTCTACCCATCGACTTTGACCC
* * * *
182810 TAGAGACTTCCTGACCTTTAGTCTGCCTATCTGCTTTGACTCTAGAGACTTTCTTACCTCTAGTC
578 TAGAAAATTCCTGACCTTTAGTCTGCCTATCTACTTTGACTCTAGAGACTTCCTTACCTCTAGTC
* * * * * * *
182875 TGCCTGTCGGCTTTGACCTTGGATACTTTCCTTACCTTTTTAGTCTACTTGTTGGCTTTGACCTT
643 T-CCTATCAGCTTTGACCTTGGAGACTTTCATTACCTTTTTAGTCTACTTGTTAGCTTTAACCCT
* * * * *
182940 TGAAACTTTCTTATCCTCAAGTCTAAC-TGTCGGCTTTGACCTTGGAGACTTGCTTACGTCAAGT
707 AGAAACTTTCTTACCCTCAAGTCT-ACTTGTCGACTTTGACCCTAGAGACTTGCTTACGTCAAGT
*
183004 CTGTCTGTCGACTTTGGCCCTAG-AGGCTTCTTTACCTTTAGTCTGCCTGTC-GACTTTGACCCT
771 CTGTCTGTCGACTTT-GACCTAGAAGGCTTCTTTACCTTTAGTCTGCCTGTCAG-CTTTGACCCT
* * * *
183067 AGAGACTTTTTTACCCTTTAGTCTATTTGTCGGCTTTGACTCTAGAGACTTCCTTACCTTCAAGT
834 AGAGACATTTTTACCCTCTAGTCTATTTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTAAAGT
* *
183132 CTACTTGTCGGCTTTGACCTTAGAGACT
899 CTACCTGTCGGCTTTGACCTTAGACACT
** * *
183160 TCCTTGTCCTCAAGTCTACCTATCAGCTTTAACCTTAGAGACTTCTTTACCCTCAAGTCTGCCTG
1 TCCTTACCCTCAAGTCTACCTATCAGCTTTAACCTTAGAGACTTCTTTACCCTCAAGTCTACCTT
* * * *
183225 TTAGCAATGGCCC-AAGAGACTTCCTCACCTTCAGTTTGCTTGTTGGCTTTGACTATAGAGACTT
66 TTGGC-TTGGCCCTAAGAGACTTCCTCACCTTCAGTTTGCCTGTCGGCTTTGACT-TAGAGACTT
* *
183289 TCTCACC-TTAGTCTTCCTGTTAGCTTTGACCTTAGAGACTTTTTCACTTTTAGTTTGCCTGTCG
129 TCTCACCTTTAGTCTGCCTGTTAGCTTTGACCTTAGAGACTTTTTGACTTTTAGTTTGCCTGTCG
* *
183353 ACTTTGACCGTAGAGACTTCCTTACCTTTAGTCAGCTTGTCGGCTTTGACCTTGGATATTTCTTG
194 ACTTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGA-ATTTCTT-
* * * ** *
183418 ACCTTTAGTATGCTTGTCGACTTTGACCCTGGAGACTTTATTACCTTAGTCTGCCTATCGGCTTT
257 ACTTTTAGTCTGCTTGTCGACTTTGACCTTGGAGACTTCCTTACCTTAGTCTGCCTGTCGGCTTT
* * * * ** *
183483 GACCTTGGAGACTTCCTTACTTC-TAGTCTGCCTGTTAGCTTTGACATTGGAGACTTTCTTAGCC
322 AACCTTGGAGACTTCCTCA-TTCTTAGTCTACCTATTAGCTTTGACCCTAGAGACTTTCTTA-CC
* * ** * *
183547 -TCAGGTCTGCCTGTCGGCTTTAACCT-TAAAGACTTACTACCTCAAGTCTACCTGTCAGCTTTG
385 ATTA-GTCTGCCTGTCGGCTTT-A-CTGTAAAGACTTACCACCTTTAGTCTACTTGTCAGCTTTA
* * * * * *
183610 AC-CTTGGAAACTTCCTTACCCTCAAGTCTGCTTATTGGCTTTGACCCTAGAGA-CTTCTTTGCC
447 ACTC-TAGAGACTTCCTTA-CCTCAAGTCTGCCTATCGGCTTTGACCCTAGAGATTTTC-TTACC
* * *
183673 TTTAGTCTGCCTATCAGCTTTGATCTTAGAGACTT
509 CTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTT
183708 TTCCACCTTT
Statistics
Matches: 1215, Mismatches: 231, Indels: 69
0.80 0.15 0.05
Matches are distributed among these distances:
929 5 0.00
930 28 0.02
931 253 0.21
932 547 0.45
933 373 0.31
934 9 0.01
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.39
Consensus pattern (926 bp):
TCCTTACCCTCAAGTCTACCTATCAGCTTTAACCTTAGAGACTTCTTTACCCTCAAGTCTACCTT
TTGGCTTGGCCCTAAGAGACTTCCTCACCTTCAGTTTGCCTGTCGGCTTTGACTTAGAGACTTTC
TCACCTTTAGTCTGCCTGTTAGCTTTGACCTTAGAGACTTTTTGACTTTTAGTTTGCCTGTCGAC
TTTGACCTTAGAGACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAATTTCTTACTT
TTAGTCTGCTTGTCGACTTTGACCTTGGAGACTTCCTTACCTTAGTCTGCCTGTCGGCTTTAACC
TTGGAGACTTCCTCATTCTTAGTCTACCTATTAGCTTTGACCCTAGAGACTTTCTTACCATTAGT
CTGCCTGTCGGCTTTACTGTAAAGACTTACCACCTTTAGTCTACTTGTCAGCTTTAACTCTAGAG
ACTTCCTTACCTCAAGTCTGCCTATCGGCTTTGACCCTAGAGATTTTCTTACCCTTAGTCTGCCT
GTCAGCTTTGACCTTAGAGACTTGCCTAAATATTAGTCTACCCATCGACTTTGACCCTAGAAAAT
TCCTGACCTTTAGTCTGCCTATCTACTTTGACTCTAGAGACTTCCTTACCTCTAGTCTCCTATCA
GCTTTGACCTTGGAGACTTTCATTACCTTTTTAGTCTACTTGTTAGCTTTAACCCTAGAAACTTT
CTTACCCTCAAGTCTACTTGTCGACTTTGACCCTAGAGACTTGCTTACGTCAAGTCTGTCTGTCG
ACTTTGACCTAGAAGGCTTCTTTACCTTTAGTCTGCCTGTCAGCTTTGACCCTAGAGACATTTTT
ACCCTCTAGTCTATTTGTCGGCTTTGACCCTAGAGACTTCCTTACCTTAAAGTCTACCTGTCGGC
TTTGACCTTAGACACT
Found at i:184324 original size:15 final size:14
Alignment explanation
Indices: 184278--184323 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 14
184268 ATTTTATATT
*
184278 AATAAAAACTATTAA
1 AATAAAAAATA-TAA
184293 AATAAAATAATATAA
1 AATAAAA-AATATAA
184308 AATAAAAAATATAA
1 AATAAAAAATATAA
184322 AA
1 AA
184324 AATATATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 9 0.31
15 17 0.59
16 3 0.10
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (14 bp):
AATAAAAAATATAA
Found at i:184341 original size:23 final size:24
Alignment explanation
Indices: 184294--184339 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
184284 AACTATTAAA
184294 ATAAAATAATATAAAATAAAAAAT
1 ATAAAATAATATAAAATAAAAAAT
*
184318 ATAAAA-AATATATACATAAAAA
1 ATAAAATAATATA-AAATAAAAA
184340 TAATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (24 bp):
ATAAAATAATATAAAATAAAAAAT
Found at i:185953 original size:30 final size:30
Alignment explanation
Indices: 185919--185975 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
185909 TTTTAAAATT
*
185919 TAAGGACTAAAATGCAAA-TATTGAAAAGCA
1 TAAGGACCAAAATGCAAATTA-TGAAAAGCA
*
185949 TAAGGACCAAATTGCAAATTATGAAAA
1 TAAGGACCAAAATGCAAATTATGAAAA
185976 CTTTTGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (30 bp):
TAAGGACCAAAATGCAAATTATGAAAAGCA
Found at i:188800 original size:19 final size:20
Alignment explanation
Indices: 188767--188804 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
188757 CTAGAACACC
188767 TGAATGTATCAATACATTTG
1 TGAATGTATCAATACATTTG
188787 TGAATGTA-CAATACATTT
1 TGAATGTATCAATACATTT
188805 AGCTATTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (20 bp):
TGAATGTATCAATACATTTG
Found at i:189518 original size:64 final size:64
Alignment explanation
Indices: 189400--189549 Score: 153
Period size: 64 Copynumber: 2.3 Consensus size: 64
189390 GTTTAATCAA
* * * * **
189400 GCTTCACCTACTTCTAGGAAAACAAATTTGACTAAAATGAAAATGGCCTAGAGTTTGATCTTAG
1 GCTTTACCTACTTCTAGGAAAACAAATTTGACTAAAAAGAAAATGACCTAGAGTTCGATCCCAG
* * *
189464 G-TTTAACCTACTTCTAGGAAAACATATTCT-ATTTAAAAAGAAAA-GACCTTGAGTTCGATCCC
1 GCTTT-ACCTACTTCTAGGAAAACAAATT-TGA-CTAAAAAGAAAATGACCTAGAGTTCGATCCC
189526 AG
63 AG
* *
189528 GCTTTACCTGCTTCTAAGAAAA
1 GCTTTACCTACTTCTAGGAAAA
189550 TAGATTTTGT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
63 2 0.03
64 55 0.77
65 14 0.20
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (64 bp):
GCTTTACCTACTTCTAGGAAAACAAATTTGACTAAAAAGAAAATGACCTAGAGTTCGATCCCAG
Found at i:190353 original size:13 final size:13
Alignment explanation
Indices: 190331--190360 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
190321 ACAATTCTTC
*
190331 ATGTATCGATACA
1 ATGTAACGATACA
190344 ATGTAACGATACA
1 ATGTAACGATACA
190357 ATGT
1 ATGT
190361 GAGTTTTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
ATGTAACGATACA
Found at i:197634 original size:20 final size:18
Alignment explanation
Indices: 197609--197650 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
197599 CTATAGACCC
197609 TAATTCATGTCAAACAAGCA
1 TAATTCAT-TCAAACAA-CA
*
197629 TAATTCATTCACACAACA
1 TAATTCATTCAAACAACA
197647 TAAT
1 TAAT
197651 AAACATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 7 0.33
20 8 0.38
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (18 bp):
TAATTCATTCAAACAACA
Found at i:203609 original size:20 final size:20
Alignment explanation
Indices: 203584--203637 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
203574 GTTAGAGGCA
* *
203584 ATGTATCAATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
203604 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
203624 ATGTATCGATACAA
1 ATGTATCGATACAA
203638 ATAATGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:203710 original size:19 final size:18
Alignment explanation
Indices: 203665--203722 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
203655 ACTACCAGTT
203665 TCATGTATCGATACAATTG
1 TCATGTATCGATACAA-TG
*
203684 TGCATGTATCAATACAATG
1 T-CATGTATCGATACAATG
203703 ATCATGTATCGATACAATG
1 -TCATGTATCGATACAATG
203722 T
1 T
203723 ATCGATACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.54
20 15 0.43
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:203724 original size:13 final size:13
Alignment explanation
Indices: 203706--203732 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
203696 TACAATGATC
203706 ATGTATCGATACA
1 ATGTATCGATACA
203719 ATGTATCGATACA
1 ATGTATCGATACA
203732 A
1 A
203733 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:203748 original size:33 final size:32
Alignment explanation
Indices: 203687--203751 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
203677 ACAATTGTGC
* *
203687 ATGTATCAATACAATGATCATGTATCGATACA
1 ATGTATCAATACAAAGATAATGTATCGATACA
*
203719 ATGTATCGATACAAAGCATAATGTATCGATACA
1 ATGTATCAATACAAAG-ATAATGTATCGATACA
203752 TCTAGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (32 bp):
ATGTATCAATACAAAGATAATGTATCGATACA
Found at i:205646 original size:39 final size:34
Alignment explanation
Indices: 205566--205671 Score: 124
Period size: 34 Copynumber: 3.0 Consensus size: 34
205556 TGCTATAACA
* *
205566 AAAAGTGGGAGAAATATTTTGAAAATAAATTTGT
1 AAAAGGGGGAGAGATATTTTGAAAATAAATTTGT
*
205600 AAAAGGGGGAGAGATATTTTGAGAAATAAACTTGTTTT
1 AAAAGGGGGAGAGATATTTTGA-AAATAAA--T-TTGT
*
205638 ATAAAGGGGGAGAGATATTTTG-AAACAAATTTGT
1 A-AAAGGGGGAGAGATATTTTGAAAATAAATTTGT
205672 TTTGGAGATA
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
34 23 0.37
35 8 0.13
37 7 0.11
38 4 0.06
39 20 0.32
ACGTcount: A:0.42, C:0.02, G:0.25, T:0.31
Consensus pattern (34 bp):
AAAAGGGGGAGAGATATTTTGAAAATAAATTTGT
Found at i:208064 original size:87 final size:87
Alignment explanation
Indices: 207784--208174 Score: 391
Period size: 87 Copynumber: 4.5 Consensus size: 87
207774 GTTGCAAATG
* * *
207784 TAAAAGGCAAATGCATATGAGATTATGCAAACACTAATGTCATTTAAAATATAGATGTGTGTGAA
1 TAAATGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAAAATATAGATGTGTGTGAA
* *
207849 ATGATGGTAATGCAAGCATCAA
66 ACGATGCTAATGCAAGCATCAA
* * * ** * * * *
207871 TAAATAGTAAATTCATATGAAATGATGTTAATA-TCGATGTCATTTAAAGTGTAGATGTGTGTGA
1 TAAATGGCAAATGCATATGAAATGATGCAAACACT-AATGTCATTTAAAATATAGATGTGTGTGA
**
207935 AACGATG-TAA-GCATCCAT-AA
65 AACGATGCTAATGCAAGCATCAA
* * * * **
207955 -AGA-GGTAAATGCATATGAAATGATGTAAACCCTAATGTCATTTAAAATACGGATGTGTGTG-A
1 TAAATGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAAAATATAGATGTGTGTGAA
208017 ACGATGCTAATGCAAGCATCAA
66 ACGATGCTAATGCAAGCATCAA
* * * *
208039 TAATATGGCAAATGCATATGAAATGATGCAAACACTAATATCATCTAAAATGTAGATATGTGTGA
1 TAA-ATGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAAAATATAGATGTGTGTGA
* * *
208104 AAAGATACAAATGCAAGCATCAA
65 AACGATGCTAATGCAAGCATCAA
* * * ** *
208127 TAAAATGGCAAATACATATGAAATAATGCCAATGCCAATGTCATTTAA
1 T-AAATGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAA
208175 GGGTGTAAAT
Statistics
Matches: 245, Mismatches: 49, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
81 7 0.03
82 49 0.20
83 9 0.04
84 4 0.02
85 7 0.03
86 5 0.02
87 105 0.43
88 57 0.23
89 2 0.01
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (87 bp):
TAAATGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAAAATATAGATGTGTGTGAA
ACGATGCTAATGCAAGCATCAA
Found at i:208095 original size:169 final size:168
Alignment explanation
Indices: 207784--208105 Score: 423
Period size: 169 Copynumber: 1.9 Consensus size: 168
207774 GTTGCAAATG
* * *
207784 TAAAAGGCAAATGCATATGAGATTATGCAAACACTAATGTCATTTAAAATATAGATGTGTGTGAA
1 TAAAAGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAAAATACAGATGTGTGTGAA
* * * * ** * * *
207849 ATGATGGTAATGCAAGCATCAATAAATAGTAAATTCATATGAAATGATGTTAATATCGATGTCAT
66 ACGATGCTAATGCAAGCATCAATAAATAGCAAATGCATATGAAATGATGCAAACATCAATATCAT
* * *
207914 TTAAAGTGTAGATGTGTGTGAAACGATGTAAGCATCCA
131 CTAAAATGTAGATATGTGTGAAACGATGTAAGCATCCA
* * * *
207952 TAAAGAGGTAAATGCATATGAAATGATGTAAACCCTAATGTCATTTAAAATACGGATGTGTGTG-
1 TAAA-AGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAAAATACAGATGTGTGTGA
*
208016 AACGATGCTAATGCAAGCATCAATAATATGGCAAATGCATATGAAATGATGCAAACA-CTAATAT
65 AACGATGCTAATGCAAGCATCAATAA-ATAGCAAATGCATATGAAATGATGCAAACATC-AATAT
208080 CATCTAAAATGTAGATATGTGTGAAA
128 CATCTAAAATGTAGATATGTGTGAAA
208106 AGATACAAAT
Statistics
Matches: 131, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
168 29 0.22
169 102 0.78
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (168 bp):
TAAAAGGCAAATGCATATGAAATGATGCAAACACTAATGTCATTTAAAATACAGATGTGTGTGAA
ACGATGCTAATGCAAGCATCAATAAATAGCAAATGCATATGAAATGATGCAAACATCAATATCAT
CTAAAATGTAGATATGTGTGAAACGATGTAAGCATCCA
Found at i:208533 original size:14 final size:14
Alignment explanation
Indices: 208514--208555 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
208504 AAAAAATATG
208514 TTTTTATTTTTTTA
1 TTTTTATTTTTTTA
*
208528 TTTTTATTTATTTA
1 TTTTTATTTTTTTA
*
208542 TTTTAAATTTTTTT
1 TTTT-TATTTTTTT
208556 GCAAGCCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTATTTTTTTA
Found at i:209496 original size:6 final size:7
Alignment explanation
Indices: 209460--209496 Score: 53
Period size: 6 Copynumber: 5.7 Consensus size: 7
209450 ATTCTACATT
209460 TTTTTCA
1 TTTTTCA
209467 TTTTTCA
1 TTTTTCA
209474 TTTTTCA
1 TTTTTCA
209481 -TTTTC-
1 TTTTTCA
209486 TTTTT-A
1 TTTTTCA
209492 TTTTT
1 TTTTT
209497 TATCTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 14 0.50
7 14 0.50
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTCA
Found at i:209507 original size:18 final size:17
Alignment explanation
Indices: 209408--209478 Score: 67
Period size: 16 Copynumber: 4.2 Consensus size: 17
209398 ATCTTTTTTC
209408 TTTTTTCATTTTTC-TT
1 TTTTTTCATTTTTCATT
*
209424 TTTTTT-ACTATTTGCACTT
1 TTTTTTCA-T-TTTTCA-TT
* *
209443 TTTTTTCATTCTACA-T
1 TTTTTTCATTTTTCATT
209459 TTTTTTCATTTTTCATT
1 TTTTTTCATTTTTCATT
209476 TTT
1 TTT
209479 CATTTTCTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
15 1 0.02
16 21 0.48
17 8 0.18
18 4 0.09
19 9 0.20
20 1 0.02
ACGTcount: A:0.13, C:0.14, G:0.01, T:0.72
Consensus pattern (17 bp):
TTTTTTCATTTTTCATT
Found at i:213631 original size:20 final size:20
Alignment explanation
Indices: 213587--213641 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
213577 AAAAAGACAG
213587 AATGTATCGATACA-TTCAT
1 AATGTATCGATACATTTCAT
**
213606 ACATGTATCGATACATTTTTT
1 A-ATGTATCGATACATTTCAT
*
213627 AATGTATCAATACAT
1 AATGTATCGATACAT
213642 CTAGGTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.03
20 26 0.84
21 4 0.13
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTTCAT
Found at i:213684 original size:20 final size:19
Alignment explanation
Indices: 213657--213733 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 19
213647 TAAAAAAGAC
*
213657 AAAATGTATCGACACATTGA
1 AAAATGTATCGATACATT-A
*
213677 AGAATGTATCGATACATTCA
1 AAAATGTATCGATACATT-A
* *
213697 TACATGTATCGATACATTAA
1 AAAATGTATCGATACATT-A
*
213717 AAAATGTATCAATACAT
1 AAAATGTATCGATACAT
213734 CTAGGTAAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (19 bp):
AAAATGTATCGATACATTA
Found at i:213693 original size:72 final size:71
Alignment explanation
Indices: 213537--213713 Score: 232
Period size: 72 Copynumber: 2.5 Consensus size: 71
213527 TTTTAACTAG
* * *
213537 ATGTATCGATACATTATTCAATGTATCAATACATCTGGGTAAAAAGACAGAATGTATCGATACAT
1 ATGTATCGATACATTATTCAATGTATCAATACATCTAGGTAAAAAGACAAAATGTATCGACACAT
*
213602 TCATAC
66 TCATAA
* *
213608 ATGTATCGATACATTTTTTAATGTATCAATACATCTAGGTAAAAAAGACAAAATGTATCGACACA
1 ATGTATCGATACATTATTCAATGTATCAATACATCTAGGT-AAAAAGACAAAATGTATCGACACA
*
213673 TTGA-AGA
65 TTCATA-A
* *
213680 ATGTATCGATACATTCATAC-ATGTATCGATACAT
1 ATGTATCGATACATT-ATTCAATGTATCAATACAT
213714 TAAAAAATGT
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
71 38 0.41
72 53 0.58
73 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.32
Consensus pattern (71 bp):
ATGTATCGATACATTATTCAATGTATCAATACATCTAGGTAAAAAGACAAAATGTATCGACACAT
TCATAA
Found at i:214664 original size:32 final size:32
Alignment explanation
Indices: 214578--214686 Score: 92
Period size: 32 Copynumber: 3.2 Consensus size: 32
214568 AAAGTGGTAA
** *
214578 TTTGAAAAGGGTTGCCACTAACTTGCGTGGGC
1 TTTGAAAAAAGTTGCCACTAACTTGTGTGGGC
* *
214610 TTTTTTTAAAAAAAAATGTGCCACTAACTTGTGTGGGC
1 ----TTT-GAAAAAAGT-TGCCACTAACTTGTGTGGGC
** *
214648 TTTGAAAAAAGTTGCCACCGACTTGTGCGGGC
1 TTTGAAAAAAGTTGCCACTAACTTGTGTGGGC
214680 TTTGAAA
1 TTTGAAA
214687 GGGTGCCACC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
32 24 0.39
33 7 0.11
34 3 0.05
36 3 0.05
37 5 0.08
38 19 0.31
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (32 bp):
TTTGAAAAAAGTTGCCACTAACTTGTGTGGGC
Found at i:215167 original size:84 final size:84
Alignment explanation
Indices: 214641--215708 Score: 1293
Period size: 85 Copynumber: 12.5 Consensus size: 84
214631 CACTAACTTG
* * * * *
214641 TGTGGGCTTTGAAAAAAGTTGCCACCGACTTGTGCGGGCTTTGAAAGGGTGCCACCGACTTGTGG
1 TGTGGGCTTTG--AAAGGATGCCACTGACTTGT--GGGCTTTGAAAGGATGCCACTGACTTGTGG
214706 GCTTTGAAAAGGTATGCCACTGACT
62 GCTTTG-AAAGG-ATGCCACTGACT
* * * * * * *
214731 TGTGGGCTTTAAAAGGGTGCCACT-ACTTATGGGCTTTGAAGGGGTACCACTGACTTGTAGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
214795 TGAAAGGGTGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * *
214814 TGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAATG-TGCCACTGATTTGTGTGGG
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGA-CT-TGTGGG
*
214878 CTTTGAAAGGGTATGCCACTTACT
63 CTTTGAAA-GG-ATGCCACTGACT
* * * *
214902 TGTGGGCTTTGAAAGGGTGCCACTGAGTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-T
*
214967 TTG-AAGAGATGCCACTAACT
65 TTGAAAG-GATGCCACTGACT
* *
214987 TATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGGAAAGGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCT
215052 TTGAAAGGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* *
215072 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAAATTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
215137 TGAAAGGGTGCCATTGACT
66 TGAAAGGATGCCACTGACT
* * * *
215156 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGTTTTGAAAGGATGCCACTGACCTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
215221 TGAAAGGGTGCCACTGATTT
66 TGAAAGGATGCCACTGA-CT
*
215241 GTGTGGGCTTTGAAAGGGTATGCCACTAACTTGTGGGCTTTGAAAGGGTATGCCACTGACTTGTG
1 -TGTGGGCTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAA-GG-ATGCCACTGACTTGTG
*
215306 GGCTTTGAAAGGGTGCCACTGACT
61 GGCTTTGAAAGGATGCCACTGACT
* * ** * *
215330 TATGGACTTTGAAAGGATGCTTCTAACTTGTGGACTTTCG-AAGAGATGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAG-GATGCCACTGACTTGTGGGC
*
215394 TTTAAAAGGATGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * *
215415 TGTGGGCTTTGGAAGGGTGCCACTGAATTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGTCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
215480 TTAAAGAGATGCCACTGACT
66 TGAAAG-GATGCCACTGACT
* * * *
215500 TGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTAACTTGCGAGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
215565 TGAAAAGG-TGCCACTAACT
66 TG-AAAGGATGCCACTGACT
* * * * *
215584 TGTGGGCTTTGAAAAGATGCCACTAACTTGCGAGCTTTGAAAAGG-TACCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCT
* *
215648 TTGAAAAGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* *
215668 TGTGGGCTTTGAAAGGATGCCAATGACCTGTGGGCTTTGAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAA
215709 GAGATGAACA
Statistics
Matches: 859, Mismatches: 95, Indels: 55
0.85 0.09 0.05
Matches are distributed among these distances:
83 38 0.04
84 276 0.32
85 285 0.33
86 89 0.10
87 20 0.02
88 102 0.12
89 3 0.00
90 46 0.05
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (84 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
TGAAAGGATGCCACTGACT
Found at i:215714 original size:28 final size:28
Alignment explanation
Indices: 214641--215708 Score: 1293
Period size: 28 Copynumber: 37.5 Consensus size: 28
214631 CACTAACTTG
* * *
214641 TGTGGGCTTTGAAAAAAGTTGCCACCGACT
1 TGTGGGCTTTG--AAAGGATGCCACTGACT
* *
214671 TGTGCGGGCTTTGAAAGGGTGCCACCGACT
1 TGT--GGGCTTTGAAAGGATGCCACTGACT
214701 TGTGGGCTTTGAAAAGGTATGCCACTGACT
1 TGTGGGCTTTG-AAAGG-ATGCCACTGACT
* *
214731 TGTGGGCTTTAAAAGGGTGCCACT-ACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
214758 TATGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
214786 TGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
214814 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
214842 TATGGGCTTTGAAAATG-TGCCACTGATTT
1 TGTGGGCTTTG-AAAGGATGCCACTGA-CT
*
214871 GTGTGGGCTTTGAAAGGGTATGCCACTTACT
1 -TGTGGGCTTTGAAA-GG-ATGCCACTGACT
* *
214902 TGTGGGCTTTGAAAGGGTGCCACTGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
214930 TATGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
214958 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
214987 TATGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
215015 TGTGGGCTTTGGAAAGGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
215044 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
215072 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
215100 TGTGGGCTTTGAAAGGATGCCACTAAAT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
215128 TGTGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
215156 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
215184 TGTGGGTTTTGAAAGGATGCCACTGACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
215212 TATGGGCTTTGAAAGGGTGCCACTGATTT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
*
215241 GTGTGGGCTTTGAAAGGGTATGCCACTAACT
1 -TGTGGGCTTTGAAA-GG-ATGCCACTGACT
215272 TGTGGGCTTTGAAAGGGTATGCCACTGACT
1 TGTGGGCTTTGAAA-GG-ATGCCACTGACT
*
215302 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * ** *
215330 TATGGACTTTGAAAGGATGCTTCTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
215358 TGTGGACTTTCG-AAGAGATGCCACTGACT
1 TGTGGGCTTT-GAAAG-GATGCCACTGACT
*
215387 TGTGGGCTTTAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
215415 TGTGGGCTTTGGAAGGGTGCCACTGAAT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
215443 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
215471 TGTGGTCTTTTAAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
215500 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
215528 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
215556 TGCGAGCTTTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
215584 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
215612 TGCGAGCTTTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
215640 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
215668 TGTGGGCTTTGAAAGGATGCCAATGACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
215696 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
215709 GAGATGAACA
Statistics
Matches: 901, Mismatches: 110, Indels: 56
0.84 0.10 0.05
Matches are distributed among these distances:
27 31 0.03
28 590 0.65
29 130 0.14
30 122 0.14
31 4 0.00
32 24 0.03
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:216099 original size:27 final size:27
Alignment explanation
Indices: 216069--216120 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
216059 CCTTTTTTAT
* *
216069 TCCATTAGGGATTGTAGACTATTCAAC
1 TCCACTAGAGATTGTAGACTATTCAAC
* *
216096 TCCACTAGAGCTTGTAGGCTATTCA
1 TCCACTAGAGATTGTAGACTATTCA
216121 GACTTTTCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
TCCACTAGAGATTGTAGACTATTCAAC
Found at i:216958 original size:17 final size:17
Alignment explanation
Indices: 216938--217030 Score: 62
Period size: 17 Copynumber: 5.1 Consensus size: 17
216928 TCTGGACCCC
216938 TTTTTTGTTTGTTTTTT
1 TTTTTTGTTTGTTTTTT
216955 TTTTTTGCTTTTGGTTTTTT
1 TTTTTTG--TTT-GTTTTTT
* *
216975 CTATTTTTTTCTTTTTTTGTT
1 -T-TTTTTGT-TTGTTTT-TT
* *
216996 TTTTTTCTTGGTTTTTT
1 TTTTTTGTTTGTTTTTT
*
217013 TTGTTTT-TCTGTTTTTT
1 TT-TTTTGTTTGTTTTTT
217030 T
1 T
217031 GGTATGAAGG
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
17 20 0.33
18 9 0.15
19 9 0.15
20 13 0.21
21 5 0.08
22 5 0.08
ACGTcount: A:0.01, C:0.05, G:0.11, T:0.83
Consensus pattern (17 bp):
TTTTTTGTTTGTTTTTT
Found at i:216991 original size:38 final size:35
Alignment explanation
Indices: 216938--217030 Score: 100
Period size: 36 Copynumber: 2.6 Consensus size: 35
216928 TCTGGACCCC
* **
216938 TTTTTTGTTTGT-TTTTTTTTTTTGCTT-TTGGTT
1 TTTTTTGTTTTTCTTTTTTTTTTTTTTTCTTGGTT
*
216971 TTTTCTATTTTTTTCTTTTTTTGTTTTTTTTCTTGGTT
1 TTTT-T-TGTTTTTCTTTTTTT-TTTTTTTTCTTGGTT
*
217009 TTTTTTGTTTTTCTGTTTTTTT
1 TTTTTTGTTTTTCTTTTTTTTT
217031 GGTATGAAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
33 4 0.08
34 1 0.02
35 7 0.14
36 20 0.41
37 7 0.14
38 10 0.20
ACGTcount: A:0.01, C:0.05, G:0.11, T:0.83
Consensus pattern (35 bp):
TTTTTTGTTTTTCTTTTTTTTTTTTTTTCTTGGTT
Found at i:217031 original size:38 final size:39
Alignment explanation
Indices: 216938--217031 Score: 104
Period size: 38 Copynumber: 2.4 Consensus size: 39
216928 TCTGGACCCC
216938 TTTTTTGTTTGTTTT-TTTTTTTTGCTTTTGGTTTTTTCTA
1 TTTTTTGTTT-TTTTGTTTTTTTTGC-TTTGGTTTTTTCTA
* * *
216978 TTTTTTTCTTTTTTTGTTTTTTTT-C-TTGGTTTTTTTTG
1 -TTTTTTGTTTTTTTGTTTTTTTTGCTTTGGTTTTTTCTA
217016 TTTTTCTGTTTTTTTG
1 TTTTT-TGTTTTTTTG
217032 GTATGAAGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
37 5 0.11
38 20 0.43
40 5 0.11
41 17 0.36
ACGTcount: A:0.01, C:0.05, G:0.12, T:0.82
Consensus pattern (39 bp):
TTTTTTGTTTTTTTGTTTTTTTTGCTTTGGTTTTTTCTA
Found at i:230169 original size:33 final size:34
Alignment explanation
Indices: 230130--230194 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
230120 ATTTGCCTGT
*
230130 ATGTATCGATACATTTCA-TAGTGTATCGATATA
1 ATGTATCGATACATTTCAGTAATGTATCGATATA
*
230163 ATGTATCGATACATTTGAGTAATGTATCGATA
1 ATGTATCGATACATTTCAGTAATGTATCGATA
230195 CATTTTCTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 17 0.59
34 12 0.41
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (34 bp):
ATGTATCGATACATTTCAGTAATGTATCGATATA
Found at i:234607 original size:20 final size:20
Alignment explanation
Indices: 234582--234767 Score: 142
Period size: 20 Copynumber: 8.8 Consensus size: 20
234572 AAAAAGACAA
234582 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAG
234602 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAG
*
234622 AATGTATCGATACATTCATA-
1 AATGTATCGATACATTGA-AG
* * *
234642 CATGTATCAATACATTGAAA
1 AATGTATCGATACATTGAAG
* *
234662 AATATATCGATCCACCTGAGTAAAAAGATAG
1 AATGTATCGAT--A-C--A-T----TGA-AG
*
234693 AATGTATCGACACATTGAAG
1 AATGTATCGATACATTGAAG
* *
234713 AATGTACCGATACATTCATA-
1 AATGTATCGATACATTGA-AG
* *
234733 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAG
234753 AATGTATCGATACAT
1 AATGTATCGATACAT
234768 CTGGGTAAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
19 2 0.02
20 106 0.80
21 4 0.03
22 1 0.01
23 1 0.01
25 2 0.02
26 2 0.02
28 1 0.01
29 1 0.01
30 2 0.02
31 10 0.08
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATTGAAG
Found at i:234637 original size:40 final size:40
Alignment explanation
Indices: 234580--234767 Score: 162
Period size: 40 Copynumber: 4.4 Consensus size: 40
234570 GTAAAAAGAC
*
234580 AAAATGTATCGATACATTGA-AGAATGTATCGATACATTGA
1 AAAATGTATCGATACATTCATA-AATGTATCGATACATTGA
* * *
234620 AGAATGTATCGATACATTCATACATGTATCAATACATTGA
1 AAAATGTATCGATACATTCATAAATGTATCGATACATTGA
* ** *
234660 AAAATATATCGATCCACCTGAGTAAAAAGATAGAATGTATCGACACATTGA
1 AAAATGTATCGAT--A-C--A-T----TCATA-AATGTATCGATACATTGA
* * *
234711 AGAATGTACCGATACATTCATACATGTATCGATACATTGA
1 AAAATGTATCGATACATTCATAAATGTATCGATACATTGA
234751 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
234768 CTGGGTAAAA
Statistics
Matches: 116, Mismatches: 20, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
40 76 0.66
41 4 0.03
42 1 0.01
43 1 0.01
45 2 0.02
46 2 0.02
48 1 0.01
49 1 0.01
50 3 0.03
51 25 0.22
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (40 bp):
AAAATGTATCGATACATTCATAAATGTATCGATACATTGA
Found at i:234755 original size:91 final size:91
Alignment explanation
Indices: 234600--234778 Score: 295
Period size: 91 Copynumber: 2.0 Consensus size: 91
234590 GATACATTGA
* *
234600 AGAATGTATCGATACATTGAAGAATGTATCGATACATTCATACATGTATCAATACATTGAAAAAT
1 AGAATGTATCGACACATTGAAGAATGTACCGATACATTCATACATGTATCAATACATTGAAAAAT
*
234665 ATATCGATCCACCTGAGTAAAAAGAT
66 ATATCGATACACCTGAGTAAAAAGAT
*
234691 AGAATGTATCGACACATTGAAGAATGTACCGATACATTCATACATGTATCGATACATTGAAAAAT
1 AGAATGTATCGACACATTGAAGAATGTACCGATACATTCATACATGTATCAATACATTGAAAAAT
* * *
234756 GTATCGATACATCTGGGTAAAAA
66 ATATCGATACACCTGAGTAAAAA
234779 TGTAACTTTT
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.28
Consensus pattern (91 bp):
AGAATGTATCGACACATTGAAGAATGTACCGATACATTCATACATGTATCAATACATTGAAAAAT
ATATCGATACACCTGAGTAAAAAGAT
Found at i:235896 original size:2 final size:2
Alignment explanation
Indices: 235889--235919 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
235879 TGGTACAGTA
235889 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
235920 ATGAAATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:239086 original size:29 final size:29
Alignment explanation
Indices: 239030--239091 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
239020 CTTATACAAC
239030 AAATTTTGTAAAAATTACAAATTAGTCCCT
1 AAATTTTGTAAAAATTACAAA-TAGTCCCT
239060 AAATTTTG-AAAAATTACTAAA-AGGTCCCT
1 AAATTTTGTAAAAATTAC-AAATA-GTCCCT
239089 AAA
1 AAA
239092 ATGTTAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
28 1 0.03
29 18 0.60
30 11 0.37
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (29 bp):
AAATTTTGTAAAAATTACAAATAGTCCCT
Found at i:239100 original size:29 final size:27
Alignment explanation
Indices: 239038--239110 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 27
239028 ACAAATTTTG
*
239038 TAAAAATTAC-AAATTAGTCCCTAAATTT
1 TAAAAATTACTAAA--AGTCCCTAAATGT
239066 TGAAAAATTACTAAAAGGTCCCTAAAATGT
1 T-AAAAATTACTAAAA-GTCCCT-AAATGT
239096 TAAAAATGT-CTAAAA
1 TAAAAAT-TACTAAAA
239111 TATGTTTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
28 2 0.05
29 27 0.69
30 10 0.26
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.30
Consensus pattern (27 bp):
TAAAAATTACTAAAAGTCCCTAAATGT
Found at i:240345 original size:154 final size:154
Alignment explanation
Indices: 240172--240452 Score: 347
Period size: 154 Copynumber: 1.8 Consensus size: 154
240162 AAAAAAATGC
240172 AAAACTCAAAAAATAAATTGAA-TTTTCATAAACTGATTCAATATCAATTTAATA-AAT-ACATT
1 AAAACTCAAAAAATAAATTGAATTTTTCA-AAACTGATTCAATATCAA-TTAA-ACAATAACATT
** * * * *
240234 TGATGAATTTTAAAAATTTTAAACTAAGAAATATCCAA-TCGAAGAAATTTAC-GAAGTAAAAAA
63 TGAAAAATTTTAAAAACTATAAACTAAGAAAAATCCAACT-AAAGAAATTTACAG-AGTAAAAAA
240297 CTCTGTATCTCGATAACAAGAAACATTCT
126 CTCTGTATCTCGATAACAAGAAACATTCT
* * * * * *
240326 AAAACTCATAAAATGAATTGAATTTTTCAAAATTGATTTAATATGAATTAAACAATAATATTTGA
1 AAAACTCAAAAAATAAATTGAATTTTTCAAAACTGATTCAATATCAATTAAACAATAACATTTGA
* * *
240391 AAAATTTTAGAAACTATAAACTTAGAAAAATCCAACTAAAGAAATTTACAGAGTAGAAAACT
66 AAAATTTTAAAAACTATAAACTAAGAAAAATCCAACTAAAGAAATTTACAGAGTAAAAAACT
240453 TCGTATTTTG
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
152 1 0.01
153 7 0.07
154 91 0.85
155 8 0.07
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.31
Consensus pattern (154 bp):
AAAACTCAAAAAATAAATTGAATTTTTCAAAACTGATTCAATATCAATTAAACAATAACATTTGA
AAAATTTTAAAAACTATAAACTAAGAAAAATCCAACTAAAGAAATTTACAGAGTAAAAAACTCTG
TATCTCGATAACAAGAAACATTCT
Found at i:243994 original size:20 final size:20
Alignment explanation
Indices: 243969--244007 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
243959 CGATACAATT
243969 AGTGAATATATCAATACATA
1 AGTGAATATATCAATACATA
* *
243989 AGTGAATGTATCGATACAT
1 AGTGAATATATCAATACAT
244008 GTCTCAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (20 bp):
AGTGAATATATCAATACATA
Found at i:252556 original size:24 final size:24
Alignment explanation
Indices: 252529--252574 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
252519 TAGACATTCT
*
252529 TTTGTTAAGACAAGTTTATCCACA
1 TTTGTTAAGACAAGCTTATCCACA
252553 TTTGTTAAGACAAGCTTATCCA
1 TTTGTTAAGACAAGCTTATCCA
252575 TATTATCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (24 bp):
TTTGTTAAGACAAGCTTATCCACA
Found at i:252642 original size:28 final size:28
Alignment explanation
Indices: 252559--252643 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
252549 CACATTTGTT
* *
252559 AAGACAAGCTTATCCATATTATCTTAAT
1 AAGACAAGCTTATCCATATTGTCTTAAC
* *
252587 AAGACAAACTTATCCATGTTGTCTTAAC
1 AAGACAAGCTTATCCATATTGTCTTAAC
* * *
252615 AAGATAAGTTTATACATATTGTCTTAAC
1 AAGACAAGCTTATCCATATTGTCTTAAC
252643 A
1 A
252644 CCTGTCATCT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.35
Consensus pattern (28 bp):
AAGACAAGCTTATCCATATTGTCTTAAC
Found at i:253849 original size:19 final size:20
Alignment explanation
Indices: 253825--253880 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
253815 TATTTCGATA
*
253825 CATTGTATCGATACATG-TT
1 CATTGTATCGATACATGCAT
*
253844 CATTGTATCAATACATGCAT
1 CATTGTATCGATACATGCAT
*
253864 AATTGTATCGATACATG
1 CATTGTATCGATACATG
253881 AAACTGGTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (20 bp):
CATTGTATCGATACATGCAT
Found at i:253870 original size:20 final size:19
Alignment explanation
Indices: 253821--253881 Score: 77
Period size: 20 Copynumber: 3.1 Consensus size: 19
253811 GCTTTATTTC
253821 GATACATTGTATCGATACAT
1 GATA-ATTGTATCGATACAT
* * *
253841 GTTCATTGTATCAATACAT
1 GATAATTGTATCGATACAT
253860 GCATAATTGTATCGATACAT
1 G-ATAATTGTATCGATACAT
253880 GA
1 GA
253882 AACTGGTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (19 bp):
GATAATTGTATCGATACAT
Found at i:253948 original size:13 final size:13
Alignment explanation
Indices: 253930--253954 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
253920 CATGGCACAT
253930 TGTATCGATACAA
1 TGTATCGATACAA
253943 TGTATCGATACA
1 TGTATCGATACA
253955 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:260877 original size:13 final size:13
Alignment explanation
Indices: 260832--260877 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
260822 GATACATGGC
260832 ACATTGTATCGAT
1 ACATTGTATCGAT
* *
260845 ATAATGTATCGAT
1 ACATTGTATCGAT
260858 ACAATTGTATCGAT
1 AC-ATTGTATCGAT
260872 ACATTG
1 ACATTG
260878 CTTCGAACGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:260883 original size:13 final size:14
Alignment explanation
Indices: 260834--260874 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
260824 TACATGGCAC
*
260834 ATTGTATCGATATA
1 ATTGTATCGATACA
260848 A-TGTATCGATACA
1 ATTGTATCGATACA
260861 ATTGTATCGATACA
1 ATTGTATCGATACA
260875 TTGCTTCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (14 bp):
ATTGTATCGATACA
Done.