genome.fa.s2437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2437
Parameters: 2 7 7 80 10 50 1000
Length:  35725

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151--192	20	2.1	20	86	8	59	54	2	0	42	1.13
260--316	21	2.7	23	78	10	68	42	0	0	57	0.98
1251--1284	15	2.3	15	89	0	50	23	26	0	50	1.50
1959--2028	20	3.5	19	82	7	86	30	15	12	41	1.85
4317--4496	51	3.5	51	78	3	177	30	23	10	35	1.89
4485--4556	28	2.6	27	86	8	101	23	30	18	27	1.97
4590--4665	28	2.7	29	88	6	104	23	31	19	25	1.98
4648--4764	51	2.3	50	91	4	189	31	29	11	27	1.92
4698--4918	79	2.8	79	77	9	227	28	24	13	33	1.93
7816--7863	13	3.7	13	75	8	53	27	6	6	60	1.45
7814--7857	14	3.2	14	77	6	54	29	4	6	59	1.44
7814--7870	27	2.1	27	87	9	82	28	7	5	59	1.45
7816--7876	26	2.3	26	81	13	72	24	8	6	60	1.49
11294--11349	19	2.9	19	91	2	85	35	17	16	30	1.92
11334--11360	13	2.1	13	100	0	54	40	14	14	29	1.86
11315--11379	32	2.0	32	90	3	103	40	16	16	26	1.90
15961--15986	13	2.0	13	100	0	52	38	15	15	30	1.88
18197--18241	21	2.1	21	84	8	56	53	4	20	22	1.63
22155--22193	13	3.0	13	96	0	69	33	15	12	38	1.85
22314--22359	21	2.2	20	81	11	58	32	19	4	43	1.71
23963--23987	12	2.1	12	100	0	50	56	0	20	24	1.43
24749--24774	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27915--27967	20	2.7	20	93	0	97	41	15	9	33	1.79
28005--28053	13	4.2	13	73	24	54	36	16	12	34	1.86
30462--30602	31	4.5	31	79	6	144	13	16	38	31	1.87
30462--30626	32	5.2	31	79	8	163	15	16	38	30	1.89
30462--30646	32	5.9	32	75	13	122	15	16	37	30	1.90
30462--30602	63	2.2	65	90	7	236	13	16	38	31	1.87
30556--30914	28	12.4	30	76	10	91	23	16	29	30	1.96
30593--32949	54	43.3	56	79	8	651	29	15	30	24	1.96
30593--30914	28	11.3	28	77	9	251	24	15	29	30	1.96
30594--30910	116	2.8	113	79	9	308	25	15	29	29	1.96
30593--32928	27	85.9	27	77	8	221	29	15	30	24	1.96
30921--32941	27	74.8	27	82	5	2084	30	15	30	23	1.95
30921--32919	80	24.7	81	81	5	2110	30	15	30	23	1.95
34245--34309	20	3.3	19	81	10	67	9	9	6	75	1.19

Tables:   1

The End!