genome.fa.s2438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2438
Parameters: 2 7 7 80 10 50 1000
Length:  77653

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3520--3574	13	3.9	14	73	15	51	52	0	0	47	1.00
3500--3552	16	3.4	16	75	17	58	50	1	1	45	1.23
3492--3576	29	2.9	29	85	3	98	49	1	1	48	1.16
4037--4108	22	3.0	22	78	15	63	50	1	1	47	1.18
4240--4307	29	2.3	30	87	2	93	47	1	0	51	1.09
4254--4306	16	3.4	16	77	17	58	47	1	0	50	1.12
4240--4289	13	3.6	14	80	15	59	46	0	0	54	1.00
5126--5160	18	1.9	18	88	0	52	57	2	2	37	1.29
5300--5344	16	2.9	15	80	9	54	40	26	17	15	1.90
5336--5379	16	2.7	15	83	13	52	61	13	4	20	1.50
7203--7259	17	3.4	17	74	13	55	38	1	5	54	1.33
7207--7265	16	3.6	16	73	13	57	38	1	6	52	1.38
7981--8009	15	1.9	15	100	0	58	20	0	10	68	1.18
8853--8901	21	2.5	19	86	6	62	32	4	4	59	1.35
11638--11672	17	2.0	17	88	5	52	31	11	25	31	1.91
16725--16762	3	13.0	3	94	5	69	34	0	0	65	0.93
21480--21505	13	2.0	13	100	0	52	38	15	15	30	1.88
23739--23783	21	2.1	21	84	8	56	53	4	20	22	1.63
25585--25621	15	2.4	16	82	17	51	51	18	16	13	1.76
27623--27702	20	3.8	20	75	15	79	26	15	15	43	1.85
27688--27713	13	2.0	13	100	0	52	30	15	15	38	1.88
30255--30280	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33231--33395	50	3.3	49	88	4	222	46	9	15	29	1.77
34026--34130	44	2.4	44	98	0	201	30	11	29	28	1.92
34026--34149	44	2.8	44	91	2	169	33	10	29	26	1.90
34381--34452	31	2.3	31	83	9	83	23	16	29	30	1.96
34406--34527	31	3.9	33	78	18	145	25	16	29	28	1.97
34428--34659	60	4.0	60	88	2	246	25	16	28	29	1.97
34403--35164	28	26.8	28	75	8	468	23	17	29	29	1.97
34404--35164	56	13.4	56	82	4	545	23	17	29	29	1.97
36383--36440	25	2.3	25	85	5	73	5	0	12	82	0.82
36382--36440	11	5.9	10	72	20	52	5	0	11	83	0.81
36383--36440	12	4.7	12	85	6	71	5	0	12	82	0.82
36383--36437	8	6.9	8	75	8	58	5	0	10	83	0.79
38054--38263	106	2.0	106	96	0	384	29	19	16	34	1.94
42393--42417	13	1.9	13	100	0	50	32	20	16	32	1.94
44332--44362	15	2.1	15	100	0	62	32	0	35	32	1.58
44940--44996	19	2.9	19	86	2	78	31	15	17	35	1.92
45026--45124	20	5.7	20	69	30	100	36	12	18	33	1.88
45046--45159	13	10.2	13	67	28	84	35	12	18	34	1.88
45025--45159	33	4.1	33	98	0	252	35	11	18	34	1.87
47413--47455	15	2.9	15	71	0	50	16	0	41	41	1.48
55414--55451	20	1.9	20	94	0	67	39	13	18	28	1.88
55366--55560	50	3.9	50	83	2	221	44	9	17	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55373--55560	100	1.9	101	84	3	254	45	9	18	27	1.79
59009--59052	23	2.0	23	81	4	54	45	2	9	43	1.48
62045--62126	28	2.9	28	82	7	96	28	17	30	24	1.97
62109--62279	51	3.3	50	75	7	171	33	11	25	29	1.91
62262--62337	27	2.8	28	88	6	102	21	21	34	23	1.97
64806--64831	13	2.0	13	100	0	52	38	15	15	30	1.88
64785--64851	33	2.0	33	88	0	98	43	14	14	26	1.85
64871--64938	19	3.9	18	76	23	83	38	14	11	35	1.83
64893--64917	13	1.9	13	100	0	50	32	16	16	36	1.90
64874--64936	32	2.0	32	96	0	117	36	15	12	34	1.86
64993--65049	21	2.7	21	97	0	105	36	19	10	33	1.86
65053--65101	1	49.0	1	89	0	71	2	4	0	93	0.39
65697--66428	55	13.3	55	88	6	990	20	20	31	28	1.97
66185--66271	29	3.2	26	66	22	70	17	18	35	28	1.93
67393--67471	1	79.0	1	89	0	122	0	3	1	94	0.33

Tables:   1

The End!